Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142280 | Msa0244180 | 0.801286 | 9.670906e-49 | -8.615850e-47 |
| Msa0244130 | Msa0244180 | 0.934794 | 2.322972e-96 | -8.615850e-47 |
| Msa0244140 | Msa0244180 | 0.850481 | 1.651196e-60 | -8.615850e-47 |
| Msa0244180 | Msa0244190 | 0.854612 | 1.096384e-61 | -8.615850e-47 |
| Msa0244180 | Msa0679550 | 0.808718 | 2.698580e-50 | -8.615850e-47 |
| Msa0244180 | Msa0998460 | 0.815379 | 9.528612e-52 | -8.615850e-47 |
| Msa0244180 | Msa1246700 | 0.801986 | 6.949997e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 7 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCTTCTTCTATGAAA+TGG | 0.340832 | 2_2:+22388074 | Msa0244180:CDS |
| GTGTTGATTCTACTATGAAA+TGG | 0.381479 | 2_2:+22390009 | Msa0244180:CDS |
| TTGTCTGATGATGTGTAAAA+AGG | 0.386614 | 2_2:-22389942 | None:intergenic |
| TGTTGATTCTACTATGAAAT+GGG | 0.403303 | 2_2:+22390010 | Msa0244180:CDS |
| TGGACTGTAGCAGAATTTGT+AGG | 0.525330 | 2_2:+22388094 | Msa0244180:CDS |
| TGGGGAGTAACAGAATCTGT+AGG | 0.639252 | 2_2:+22390029 | Msa0244180:CDS |
| GTTGATTCTACTATGAAATG+GGG | 0.643497 | 2_2:+22390011 | Msa0244180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTAAAAATATATTATGTTT+TGG | - | chr2_2:22389226-22389245 | None:intergenic | 10.0% |
| !!! | TTTTAAAGATATTAACTTTT+TGG | - | chr2_2:22389268-22389287 | None:intergenic | 10.0% |
| !!! | ATAAAAGTATAAATATATGA+AGG | + | chr2_2:22389287-22389306 | Msa0244180:intron | 10.0% |
| !!! | AGTAAATTTGTTTTTTTTTT+AGG | + | chr2_2:22389456-22389475 | Msa0244180:intron | 10.0% |
| !! | TATAAAATAATACTGAAAAT+TGG | + | chr2_2:22389523-22389542 | Msa0244180:intron | 10.0% |
| !!! | CTTAAAAATATATTATGTTT+TGG | - | chr2_2:22389226-22389245 | None:intergenic | 10.0% |
| !!! | TTTTAAAGATATTAACTTTT+TGG | - | chr2_2:22389268-22389287 | None:intergenic | 10.0% |
| !!! | ATAAAAGTATAAATATATGA+AGG | + | chr2_2:22389287-22389306 | Msa0244180:intron | 10.0% |
| !!! | AGTAAATTTGTTTTTTTTTT+AGG | + | chr2_2:22389456-22389475 | Msa0244180:intron | 10.0% |
| !! | TATAAAATAATACTGAAAAT+TGG | + | chr2_2:22389523-22389542 | Msa0244180:intron | 10.0% |
| !!! | TTTTTTTTTTTACTAAGTCA+AGG | - | chr2_2:22387795-22387814 | None:intergenic | 15.0% |
| !! | TTTAATATGTAACACATTTA+TGG | + | chr2_2:22387821-22387840 | Msa0244180:intron | 15.0% |
| !! | AAACAATTGATATATTTACA+AGG | - | chr2_2:22388244-22388263 | None:intergenic | 15.0% |
| !!! | ATTTTCTTCAATTAAAGTAA+CGG | + | chr2_2:22388487-22388506 | Msa0244180:intron | 15.0% |
| !! | ATATGAACTTATAAAGTATA+AGG | + | chr2_2:22388648-22388667 | Msa0244180:intron | 15.0% |
| !! | TATGAACTTATAAAGTATAA+GGG | + | chr2_2:22388649-22388668 | Msa0244180:intron | 15.0% |
| !!! | TACCAATTTTTTTTATGATA+TGG | + | chr2_2:22388752-22388771 | Msa0244180:intron | 15.0% |
| !! | TCTTATAGAAATGATATTTA+TGG | - | chr2_2:22388789-22388808 | None:intergenic | 15.0% |
| !!! | TCAGTATTATTTTATATGTA+AGG | - | chr2_2:22389519-22389538 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTACTAAGTCA+AGG | - | chr2_2:22387795-22387814 | None:intergenic | 15.0% |
| !! | TTTAATATGTAACACATTTA+TGG | + | chr2_2:22387821-22387840 | Msa0244180:intron | 15.0% |
| !! | AAACAATTGATATATTTACA+AGG | - | chr2_2:22388244-22388263 | None:intergenic | 15.0% |
| !!! | ATTTTCTTCAATTAAAGTAA+CGG | + | chr2_2:22388487-22388506 | Msa0244180:intron | 15.0% |
| !! | ATATGAACTTATAAAGTATA+AGG | + | chr2_2:22388648-22388667 | Msa0244180:intron | 15.0% |
| !! | TATGAACTTATAAAGTATAA+GGG | + | chr2_2:22388649-22388668 | Msa0244180:intron | 15.0% |
| !!! | TACCAATTTTTTTTATGATA+TGG | + | chr2_2:22388752-22388771 | Msa0244180:intron | 15.0% |
| !! | TCTTATAGAAATGATATTTA+TGG | - | chr2_2:22388789-22388808 | None:intergenic | 15.0% |
| !!! | TCAGTATTATTTTATATGTA+AGG | - | chr2_2:22389519-22389538 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTAAGCTTTGTAA+AGG | - | chr2_2:22387970-22387989 | None:intergenic | 20.0% |
| !!! | AAACATATTTAAAGCTTAGT+AGG | - | chr2_2:22388180-22388199 | None:intergenic | 20.0% |
| !!! | TGTTTATTTTAAGTTCTGTT+TGG | + | chr2_2:22388259-22388278 | Msa0244180:intron | 20.0% |
| !!! | TAGTTGATAAATTAGCTTAT+AGG | + | chr2_2:22388299-22388318 | Msa0244180:intron | 20.0% |
| !!! | ATCATTTTTTCTTCCAATTT+TGG | - | chr2_2:22388515-22388534 | None:intergenic | 20.0% |
| !! | TACACATATTGAAATATAGT+GGG | - | chr2_2:22388828-22388847 | None:intergenic | 20.0% |
| !! | ATACACATATTGAAATATAG+TGG | - | chr2_2:22388829-22388848 | None:intergenic | 20.0% |
| !! | CAAATTTACTCATAAACTAT+CGG | - | chr2_2:22389446-22389465 | None:intergenic | 20.0% |
| !! | TTTAGTATGTATCACATTTA+TGG | + | chr2_2:22389754-22389773 | Msa0244180:intron | 20.0% |
| !! | TTATTAGTCCATAAATTCAA+TGG | - | chr2_2:22389780-22389799 | None:intergenic | 20.0% |
| !!! | TTATGGACTAATAATTTCTT+AGG | + | chr2_2:22389786-22389805 | Msa0244180:intron | 20.0% |
| !!! | TTTTTCTTTAAGCTTTGTAA+AGG | - | chr2_2:22387970-22387989 | None:intergenic | 20.0% |
| !!! | AAACATATTTAAAGCTTAGT+AGG | - | chr2_2:22388180-22388199 | None:intergenic | 20.0% |
| !!! | TGTTTATTTTAAGTTCTGTT+TGG | + | chr2_2:22388259-22388278 | Msa0244180:intron | 20.0% |
| !!! | TAGTTGATAAATTAGCTTAT+AGG | + | chr2_2:22388299-22388318 | Msa0244180:intron | 20.0% |
| !!! | ATCATTTTTTCTTCCAATTT+TGG | - | chr2_2:22388515-22388534 | None:intergenic | 20.0% |
| !! | TACACATATTGAAATATAGT+GGG | - | chr2_2:22388828-22388847 | None:intergenic | 20.0% |
| !! | ATACACATATTGAAATATAG+TGG | - | chr2_2:22388829-22388848 | None:intergenic | 20.0% |
| !! | CAAATTTACTCATAAACTAT+CGG | - | chr2_2:22389446-22389465 | None:intergenic | 20.0% |
| !! | TTTAGTATGTATCACATTTA+TGG | + | chr2_2:22389754-22389773 | Msa0244180:intron | 20.0% |
| !! | TTATTAGTCCATAAATTCAA+TGG | - | chr2_2:22389780-22389799 | None:intergenic | 20.0% |
| !!! | TTATGGACTAATAATTTCTT+AGG | + | chr2_2:22389786-22389805 | Msa0244180:intron | 20.0% |
| ! | TGTTTCATGCTAAAAAGATT+AGG | + | chr2_2:22387648-22387667 | Msa0244180:intron | 25.0% |
| !! | AAAATCCAAATCTTTTCTGA+AGG | - | chr2_2:22387702-22387721 | None:intergenic | 25.0% |
| !! | TTCAGAAAAGATTTGGATTT+TGG | + | chr2_2:22387701-22387720 | Msa0244180:intron | 25.0% |
| ! | TTATTAGTCCATCAATTCAA+TGG | - | chr2_2:22387847-22387866 | None:intergenic | 25.0% |
| !!! | TGATGGACTAATAATTTCTT+TGG | + | chr2_2:22387853-22387872 | Msa0244180:intron | 25.0% |
| ! | TTGATTCTTCTTCTATGAAA+TGG | + | chr2_2:22388074-22388093 | Msa0244180:CDS | 25.0% |
| ! | CCAAGAATATATACATGAAA+AGG | - | chr2_2:22388149-22388168 | None:intergenic | 25.0% |
| !! | CCTTTTCATGTATATATTCT+TGG | + | chr2_2:22388146-22388165 | Msa0244180:intron | 25.0% |
| ! | TTCAAGTAGCTTAAATCTAA+TGG | - | chr2_2:22388541-22388560 | None:intergenic | 25.0% |
| !!! | ATGACTAAAAAGTACTTGTT+TGG | - | chr2_2:22388630-22388649 | None:intergenic | 25.0% |
| ! | GGCCATATCATAAAAAAAAT+TGG | - | chr2_2:22388757-22388776 | None:intergenic | 25.0% |
| ! | AGTAGAAAAAAATAAGATCG+TGG | + | chr2_2:22389061-22389080 | Msa0244180:intron | 25.0% |
| ! | GTTTCATGCTAAAGAAAATT+AGG | + | chr2_2:22389587-22389606 | Msa0244180:intron | 25.0% |
| ! | ATTTATGGCCATTGAATTTA+TGG | + | chr2_2:22389769-22389788 | Msa0244180:intron | 25.0% |
| ! | AGTTTATTATAGTTGGGATT+TGG | - | chr2_2:22389875-22389894 | None:intergenic | 25.0% |
| ! | CTGTAGAGTTTATTATAGTT+GGG | - | chr2_2:22389881-22389900 | None:intergenic | 25.0% |
| !!! | TGTTGATTCTACTATGAAAT+GGG | + | chr2_2:22390010-22390029 | Msa0244180:CDS | 25.0% |
| ! | TGTTTCATGCTAAAAAGATT+AGG | + | chr2_2:22387648-22387667 | Msa0244180:intron | 25.0% |
| !! | AAAATCCAAATCTTTTCTGA+AGG | - | chr2_2:22387702-22387721 | None:intergenic | 25.0% |
| !! | TTCAGAAAAGATTTGGATTT+TGG | + | chr2_2:22387701-22387720 | Msa0244180:intron | 25.0% |
| ! | TTATTAGTCCATCAATTCAA+TGG | - | chr2_2:22387847-22387866 | None:intergenic | 25.0% |
| !!! | TGATGGACTAATAATTTCTT+TGG | + | chr2_2:22387853-22387872 | Msa0244180:intron | 25.0% |
| ! | TTGATTCTTCTTCTATGAAA+TGG | + | chr2_2:22388074-22388093 | Msa0244180:CDS | 25.0% |
| ! | CCAAGAATATATACATGAAA+AGG | - | chr2_2:22388149-22388168 | None:intergenic | 25.0% |
| !! | CCTTTTCATGTATATATTCT+TGG | + | chr2_2:22388146-22388165 | Msa0244180:intron | 25.0% |
| ! | TTCAAGTAGCTTAAATCTAA+TGG | - | chr2_2:22388541-22388560 | None:intergenic | 25.0% |
| !!! | ATGACTAAAAAGTACTTGTT+TGG | - | chr2_2:22388630-22388649 | None:intergenic | 25.0% |
| ! | GGCCATATCATAAAAAAAAT+TGG | - | chr2_2:22388757-22388776 | None:intergenic | 25.0% |
| ! | AGTAGAAAAAAATAAGATCG+TGG | + | chr2_2:22389061-22389080 | Msa0244180:intron | 25.0% |
| ! | GTTTCATGCTAAAGAAAATT+AGG | + | chr2_2:22389587-22389606 | Msa0244180:intron | 25.0% |
| ! | ATTTATGGCCATTGAATTTA+TGG | + | chr2_2:22389769-22389788 | Msa0244180:intron | 25.0% |
| ! | AGTTTATTATAGTTGGGATT+TGG | - | chr2_2:22389875-22389894 | None:intergenic | 25.0% |
| ! | CTGTAGAGTTTATTATAGTT+GGG | - | chr2_2:22389881-22389900 | None:intergenic | 25.0% |
| !!! | TGTTGATTCTACTATGAAAT+GGG | + | chr2_2:22390010-22390029 | Msa0244180:CDS | 25.0% |
| ATTTATGGCCATTGAATTGA+TGG | + | chr2_2:22387836-22387855 | Msa0244180:intron | 30.0% | |
| TAGAGTTTATAGTTGGGATT+AGG | - | chr2_2:22387939-22387958 | None:intergenic | 30.0% | |
| ATTGTCTGATGAAGTGTAAA+AGG | - | chr2_2:22388008-22388027 | None:intergenic | 30.0% | |
| TTGATTGAGTTTGCAGTATT+CGG | + | chr2_2:22388396-22388415 | Msa0244180:intron | 30.0% | |
| TAAAGTAACGGTTCCAAAAT+TGG | + | chr2_2:22388499-22388518 | Msa0244180:intron | 30.0% | |
| AAAATGTGAGAGAAATTCGA+AGG | - | chr2_2:22388728-22388747 | None:intergenic | 30.0% | |
| ! | CATATTGAAATATAGTGGGA+TGG | - | chr2_2:22388824-22388843 | None:intergenic | 30.0% |
| CCTAAAAGAGTTCAACTTTA+CGG | - | chr2_2:22388896-22388915 | None:intergenic | 30.0% | |
| ! | CGTAAAGTTGAACTCTTTTA+GGG | + | chr2_2:22388894-22388913 | Msa0244180:intron | 30.0% |
| ATGAAAGAGAAATAGAGAGA+TGG | + | chr2_2:22389084-22389103 | Msa0244180:intron | 30.0% | |
| CAACAAAGTTAAGATGATGA+AGG | + | chr2_2:22389677-22389696 | Msa0244180:intron | 30.0% | |
| ! | TTTTACTAAGTCAAGGTTCT+AGG | - | chr2_2:22389727-22389746 | None:intergenic | 30.0% |
| GCTGTAGAGTTTATTATAGT+TGG | - | chr2_2:22389882-22389901 | None:intergenic | 30.0% | |
| ! | CTTTAAGCTTTTTACTGGAA+AGG | - | chr2_2:22389904-22389923 | None:intergenic | 30.0% |
| TCCAGTAAAAAGCTTAAAGA+AGG | + | chr2_2:22389905-22389924 | Msa0244180:intron | 30.0% | |
| ! | TCCTTCTTTAAGCTTTTTAC+TGG | - | chr2_2:22389909-22389928 | None:intergenic | 30.0% |
| ! | TTGTCTGATGATGTGTAAAA+AGG | - | chr2_2:22389945-22389964 | None:intergenic | 30.0% |
| !! | ATCAGACAATTTTGATACAC+AGG | + | chr2_2:22388018-22388037 | Msa0244180:intron | 30.0% |
| !! | GTGTTGATTCTACTATGAAA+TGG | + | chr2_2:22390009-22390028 | Msa0244180:CDS | 30.0% |
| ! | GTTGATTCTACTATGAAATG+GGG | + | chr2_2:22390011-22390030 | Msa0244180:CDS | 30.0% |
| ATTTATGGCCATTGAATTGA+TGG | + | chr2_2:22387836-22387855 | Msa0244180:intron | 30.0% | |
| TAGAGTTTATAGTTGGGATT+AGG | - | chr2_2:22387939-22387958 | None:intergenic | 30.0% | |
| ATTGTCTGATGAAGTGTAAA+AGG | - | chr2_2:22388008-22388027 | None:intergenic | 30.0% | |
| TTGATTGAGTTTGCAGTATT+CGG | + | chr2_2:22388396-22388415 | Msa0244180:intron | 30.0% | |
| TAAAGTAACGGTTCCAAAAT+TGG | + | chr2_2:22388499-22388518 | Msa0244180:intron | 30.0% | |
| AAAATGTGAGAGAAATTCGA+AGG | - | chr2_2:22388728-22388747 | None:intergenic | 30.0% | |
| ! | CATATTGAAATATAGTGGGA+TGG | - | chr2_2:22388824-22388843 | None:intergenic | 30.0% |
| CCTAAAAGAGTTCAACTTTA+CGG | - | chr2_2:22388896-22388915 | None:intergenic | 30.0% | |
| ! | CGTAAAGTTGAACTCTTTTA+GGG | + | chr2_2:22388894-22388913 | Msa0244180:intron | 30.0% |
| ATGAAAGAGAAATAGAGAGA+TGG | + | chr2_2:22389084-22389103 | Msa0244180:intron | 30.0% | |
| CAACAAAGTTAAGATGATGA+AGG | + | chr2_2:22389677-22389696 | Msa0244180:intron | 30.0% | |
| ! | TTTTACTAAGTCAAGGTTCT+AGG | - | chr2_2:22389727-22389746 | None:intergenic | 30.0% |
| GCTGTAGAGTTTATTATAGT+TGG | - | chr2_2:22389882-22389901 | None:intergenic | 30.0% | |
| ! | CTTTAAGCTTTTTACTGGAA+AGG | - | chr2_2:22389904-22389923 | None:intergenic | 30.0% |
| TCCAGTAAAAAGCTTAAAGA+AGG | + | chr2_2:22389905-22389924 | Msa0244180:intron | 30.0% | |
| ! | TCCTTCTTTAAGCTTTTTAC+TGG | - | chr2_2:22389909-22389928 | None:intergenic | 30.0% |
| ! | TTGTCTGATGATGTGTAAAA+AGG | - | chr2_2:22389945-22389964 | None:intergenic | 30.0% |
| !! | ATCAGACAATTTTGATACAC+AGG | + | chr2_2:22388018-22388037 | Msa0244180:intron | 30.0% |
| !! | GTGTTGATTCTACTATGAAA+TGG | + | chr2_2:22390009-22390028 | Msa0244180:CDS | 30.0% |
| ! | GTTGATTCTACTATGAAATG+GGG | + | chr2_2:22390011-22390030 | Msa0244180:CDS | 30.0% |
| ACCTTCCTTCAGAAAAGATT+TGG | + | chr2_2:22387694-22387713 | Msa0244180:intron | 35.0% | |
| !! | TCCAAATCTTTTCTGAAGGA+AGG | - | chr2_2:22387698-22387717 | None:intergenic | 35.0% |
| ! | TTTTACTAAGTCAAGGCTCT+GGG | - | chr2_2:22387788-22387807 | None:intergenic | 35.0% |
| ! | TTTTTACTAAGTCAAGGCTC+TGG | - | chr2_2:22387789-22387808 | None:intergenic | 35.0% |
| ATCCCAACTATAAACTCTAC+AGG | + | chr2_2:22387940-22387959 | Msa0244180:intron | 35.0% | |
| AGCCTGTAGAGTTTATAGTT+GGG | - | chr2_2:22387945-22387964 | None:intergenic | 35.0% | |
| AAGCCTGTAGAGTTTATAGT+TGG | - | chr2_2:22387946-22387965 | None:intergenic | 35.0% | |
| ! | AAGCTAGCTTACACTTATAG+CGG | + | chr2_2:22388363-22388382 | Msa0244180:intron | 35.0% |
| !!! | TTTTTTAGACACCAAGAGTC+TGG | - | chr2_2:22388702-22388721 | None:intergenic | 35.0% |
| TGATATTTATGGTCTCATCG+AGG | - | chr2_2:22388778-22388797 | None:intergenic | 35.0% | |
| ! | GTCAATGAAGTTGACTTAGT+TGG | + | chr2_2:22388854-22388873 | Msa0244180:intron | 35.0% |
| ! | CCGTAAAGTTGAACTCTTTT+AGG | + | chr2_2:22388893-22388912 | Msa0244180:intron | 35.0% |
| !! | AAAGTTGAACTCTTTTAGGG+AGG | + | chr2_2:22388897-22388916 | Msa0244180:intron | 35.0% |
| !! | AAGTTGAACTCTTTTAGGGA+GGG | + | chr2_2:22388898-22388917 | Msa0244180:intron | 35.0% |
| GACTATTTAAGCTTGGAACA+AGG | + | chr2_2:22388934-22388953 | Msa0244180:intron | 35.0% | |
| CATCAAAGAGAGATGATTGA+GGG | - | chr2_2:22389036-22389055 | None:intergenic | 35.0% | |
| ! | AACTTGCCTTGTCATTTCAA+TGG | + | chr2_2:22389492-22389511 | Msa0244180:intron | 35.0% |
| TAAGGTCCATTGAAATGACA+AGG | - | chr2_2:22389501-22389520 | None:intergenic | 35.0% | |
| !! | TCCAAATCTTTTCTGAAGGA+AGG | - | chr2_2:22387698-22387717 | None:intergenic | 35.0% |
| !!! | ACGCGTTTTTTACTAAGTCA+AGG | - | chr2_2:22389734-22389753 | None:intergenic | 35.0% |
| ! | CTGATGATGTGTAAAAAGGA+AGG | - | chr2_2:22389941-22389960 | None:intergenic | 35.0% |
| ACCTTCCTTCAGAAAAGATT+TGG | + | chr2_2:22387694-22387713 | Msa0244180:intron | 35.0% | |
| !! | TCCAAATCTTTTCTGAAGGA+AGG | - | chr2_2:22387698-22387717 | None:intergenic | 35.0% |
| ! | TTTTACTAAGTCAAGGCTCT+GGG | - | chr2_2:22387788-22387807 | None:intergenic | 35.0% |
| ! | TTTTTACTAAGTCAAGGCTC+TGG | - | chr2_2:22387789-22387808 | None:intergenic | 35.0% |
| ATCCCAACTATAAACTCTAC+AGG | + | chr2_2:22387940-22387959 | Msa0244180:intron | 35.0% | |
| AGCCTGTAGAGTTTATAGTT+GGG | - | chr2_2:22387945-22387964 | None:intergenic | 35.0% | |
| AAGCCTGTAGAGTTTATAGT+TGG | - | chr2_2:22387946-22387965 | None:intergenic | 35.0% | |
| ! | AAGCTAGCTTACACTTATAG+CGG | + | chr2_2:22388363-22388382 | Msa0244180:intron | 35.0% |
| !!! | TTTTTTAGACACCAAGAGTC+TGG | - | chr2_2:22388702-22388721 | None:intergenic | 35.0% |
| TGATATTTATGGTCTCATCG+AGG | - | chr2_2:22388778-22388797 | None:intergenic | 35.0% | |
| ! | GTCAATGAAGTTGACTTAGT+TGG | + | chr2_2:22388854-22388873 | Msa0244180:intron | 35.0% |
| ! | CCGTAAAGTTGAACTCTTTT+AGG | + | chr2_2:22388893-22388912 | Msa0244180:intron | 35.0% |
| !! | AAAGTTGAACTCTTTTAGGG+AGG | + | chr2_2:22388897-22388916 | Msa0244180:intron | 35.0% |
| !! | AAGTTGAACTCTTTTAGGGA+GGG | + | chr2_2:22388898-22388917 | Msa0244180:intron | 35.0% |
| GACTATTTAAGCTTGGAACA+AGG | + | chr2_2:22388934-22388953 | Msa0244180:intron | 35.0% | |
| CATCAAAGAGAGATGATTGA+GGG | - | chr2_2:22389036-22389055 | None:intergenic | 35.0% | |
| ! | AACTTGCCTTGTCATTTCAA+TGG | + | chr2_2:22389492-22389511 | Msa0244180:intron | 35.0% |
| TAAGGTCCATTGAAATGACA+AGG | - | chr2_2:22389501-22389520 | None:intergenic | 35.0% | |
| !! | TCCAAATCTTTTCTGAAGGA+AGG | - | chr2_2:22387698-22387717 | None:intergenic | 35.0% |
| !!! | ACGCGTTTTTTACTAAGTCA+AGG | - | chr2_2:22389734-22389753 | None:intergenic | 35.0% |
| ! | CTGATGATGTGTAAAAAGGA+AGG | - | chr2_2:22389941-22389960 | None:intergenic | 35.0% |
| CAACGAAGTTGAGATGATGA+AGG | + | chr2_2:22387738-22387757 | Msa0244180:intron | 40.0% | |
| TGGACTGTAGCAGAATTTGT+AGG | + | chr2_2:22388094-22388113 | Msa0244180:CDS | 40.0% | |
| !! | AGTTGAACTCTTTTAGGGAG+GGG | + | chr2_2:22388899-22388918 | Msa0244180:intron | 40.0% |
| !! | GTGCGTTGACTATTTAAGCT+TGG | + | chr2_2:22388927-22388946 | Msa0244180:intron | 40.0% |
| CCATCAAAGAGAGATGATTG+AGG | - | chr2_2:22389037-22389056 | None:intergenic | 40.0% | |
| CCTCAATCATCTCTCTTTGA+TGG | + | chr2_2:22389034-22389053 | Msa0244180:intron | 40.0% | |
| ! | GCATTCTTCTTGTGACTTGT+TGG | + | chr2_2:22389199-22389218 | Msa0244180:intron | 40.0% |
| GCCTTCCTTCAGAAAAGATT+TGG | + | chr2_2:22389640-22389659 | Msa0244180:intron | 40.0% | |
| ! | GCAGTCCAAATCTTTTCTGA+AGG | - | chr2_2:22389648-22389667 | None:intergenic | 40.0% |
| CAACGAAGTTGAGATGATGA+AGG | + | chr2_2:22387738-22387757 | Msa0244180:intron | 40.0% | |
| TGGACTGTAGCAGAATTTGT+AGG | + | chr2_2:22388094-22388113 | Msa0244180:CDS | 40.0% | |
| !! | AGTTGAACTCTTTTAGGGAG+GGG | + | chr2_2:22388899-22388918 | Msa0244180:intron | 40.0% |
| !! | GTGCGTTGACTATTTAAGCT+TGG | + | chr2_2:22388927-22388946 | Msa0244180:intron | 40.0% |
| CCATCAAAGAGAGATGATTG+AGG | - | chr2_2:22389037-22389056 | None:intergenic | 40.0% | |
| CCTCAATCATCTCTCTTTGA+TGG | + | chr2_2:22389034-22389053 | Msa0244180:intron | 40.0% | |
| ! | GCATTCTTCTTGTGACTTGT+TGG | + | chr2_2:22389199-22389218 | Msa0244180:intron | 40.0% |
| GCCTTCCTTCAGAAAAGATT+TGG | + | chr2_2:22389640-22389659 | Msa0244180:intron | 40.0% | |
| ! | GCAGTCCAAATCTTTTCTGA+AGG | - | chr2_2:22389648-22389667 | None:intergenic | 40.0% |
| GCGAATGAGCTTAGAGTGAT+TGG | + | chr2_2:22388335-22388354 | Msa0244180:intron | 45.0% | |
| TGTCTTAGCAACCAGACTCT+TGG | + | chr2_2:22388688-22388707 | Msa0244180:intron | 45.0% | |
| ! | GATTTTGCTCGATCCTTCGT+CGG | + | chr2_2:22388966-22388985 | Msa0244180:intron | 45.0% |
| TGGGGAGTAACAGAATCTGT+AGG | + | chr2_2:22390029-22390048 | Msa0244180:CDS | 45.0% | |
| GCGAATGAGCTTAGAGTGAT+TGG | + | chr2_2:22388335-22388354 | Msa0244180:intron | 45.0% | |
| TGTCTTAGCAACCAGACTCT+TGG | + | chr2_2:22388688-22388707 | Msa0244180:intron | 45.0% | |
| ! | GATTTTGCTCGATCCTTCGT+CGG | + | chr2_2:22388966-22388985 | Msa0244180:intron | 45.0% |
| TGGGGAGTAACAGAATCTGT+AGG | + | chr2_2:22390029-22390048 | Msa0244180:CDS | 45.0% | |
| AACGAGCAAAGCTCCGACGA+AGG | - | chr2_2:22388982-22389001 | None:intergenic | 55.0% | |
| GGAGCTTTGCTCGTTGCTCA+TGG | + | chr2_2:22388987-22389006 | Msa0244180:intron | 55.0% | |
| AACGAGCAAAGCTCCGACGA+AGG | - | chr2_2:22388982-22389001 | None:intergenic | 55.0% | |
| GGAGCTTTGCTCGTTGCTCA+TGG | + | chr2_2:22388987-22389006 | Msa0244180:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 22387618 | 22390064 | 22387618 | ID=Msa0244180;Name=Msa0244180 |
| chr2_2 | mRNA | 22387618 | 22390064 | 22387618 | ID=Msa0244180-mRNA-1;Parent=Msa0244180;Name=Msa0244180-mRNA-1;_AED=0.58;_eAED=0.58;_QI=0|0|0|0.66|1|1|3|0|83 |
| chr2_2 | exon | 22387618 | 22387621 | 22387618 | ID=Msa0244180-mRNA-1:exon:8628;Parent=Msa0244180-mRNA-1 |
| chr2_2 | exon | 22388023 | 22388115 | 22388023 | ID=Msa0244180-mRNA-1:exon:8629;Parent=Msa0244180-mRNA-1 |
| chr2_2 | exon | 22389910 | 22390064 | 22389910 | ID=Msa0244180-mRNA-1:exon:8630;Parent=Msa0244180-mRNA-1 |
| chr2_2 | CDS | 22387618 | 22387621 | 22387618 | ID=Msa0244180-mRNA-1:cds;Parent=Msa0244180-mRNA-1 |
| chr2_2 | CDS | 22388023 | 22388115 | 22388023 | ID=Msa0244180-mRNA-1:cds;Parent=Msa0244180-mRNA-1 |
| chr2_2 | CDS | 22389910 | 22390064 | 22389910 | ID=Msa0244180-mRNA-1:cds;Parent=Msa0244180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
