AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0244950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244950 MtrunA17_Chr2g0298861 87.835 559 36 2 6 533 72 629 0.0 984
Msa0244950 MtrunA17_Chr7g0223721 74.464 560 105 4 6 534 66 618 0.0 827
Msa0244950 MtrunA17_Chr4g0040931 74.725 546 105 3 19 533 74 617 0.0 806
Msa0244950 MtrunA17_Chr2g0298851 71.115 547 125 3 19 534 74 618 0.0 790
Msa0244950 MtrunA17_Chr5g0427901 68.412 554 130 5 19 530 74 624 0.0 753
Msa0244950 MtrunA17_Chr7g0223851 68.877 543 136 2 19 530 83 623 0.0 748
Msa0244950 MtrunA17_Chr2g0293581 66.667 546 150 2 19 533 75 619 0.0 746
Msa0244950 MtrunA17_Chr7g0233311 68.508 543 139 2 19 530 74 615 0.0 745
Msa0244950 MtrunA17_Chr4g0012541 68.352 534 136 2 28 530 74 605 0.0 738
Msa0244950 MtrunA17_Chr7g0225671 68.315 546 139 4 19 533 81 623 0.0 736
Msa0244950 MtrunA17_Chr7g0223801 67.035 543 143 6 19 530 74 611 0.0 722
Msa0244950 MtrunA17_Chr7g0223821 66.910 547 143 5 19 530 74 617 0.0 720
Msa0244950 MtrunA17_Chr7g0223821 54.217 83 36 1 450 530 621 703 1.67e-15 79.7
Msa0244950 MtrunA17_Chr7g0221661 66.544 544 148 4 19 531 74 614 0.0 719
Msa0244950 MtrunA17_Chr2g0287631 66.484 546 151 2 19 533 74 618 0.0 711
Msa0244950 MtrunA17_Chr8g0390821 65.505 545 129 6 28 530 124 651 0.0 689
Msa0244950 MtrunA17_Chr7g0233301 62.590 556 140 3 6 530 66 584 0.0 682
Msa0244950 MtrunA17_Chr7g0223831 63.985 547 136 4 19 534 74 590 0.0 681
Msa0244950 MtrunA17_Chr7g0217971 64.030 531 132 6 19 518 74 576 0.0 665
Msa0244950 MtrunA17_Chr7g0215261 63.570 549 130 7 19 534 74 585 0.0 662
Msa0244950 MtrunA17_Chr2g0296391 72.120 434 120 1 19 452 74 506 0.0 657
Msa0244950 MtrunA17_Chr7g0223711 60.000 540 182 4 19 527 74 610 0.0 652
Msa0244950 MtrunA17_Chr7g0223181 59.926 544 184 4 19 530 72 613 0.0 642
Msa0244950 MtrunA17_Chr7g0228281 61.181 559 132 8 7 533 128 633 0.0 640
Msa0244950 MtrunA17_Chr7g0223541 58.867 547 191 4 15 530 27 570 0.0 639
Msa0244950 MtrunA17_Chr8g0350731 60.668 539 177 5 19 526 102 636 0.0 637
Msa0244950 MtrunA17_Chr7g0223781 60.221 543 180 5 19 530 74 611 0.0 636
Msa0244950 MtrunA17_Chr4g0031301 59.375 544 187 4 19 530 72 613 0.0 635
Msa0244950 MtrunA17_Chr7g0262821 59.007 544 189 4 19 530 72 613 0.0 632
Msa0244950 MtrunA17_Chr4g0031321 59.375 544 187 4 19 530 72 613 0.0 631
Msa0244950 MtrunA17_Chr7g0223291 58.824 544 190 4 19 530 72 613 0.0 631
Msa0244950 MtrunA17_Chr7g0223681 60.338 532 174 6 36 534 2 529 0.0 629
Msa0244950 MtrunA17_Chr7g0223031 59.630 540 183 5 19 527 74 609 0.0 627
Msa0244950 MtrunA17_Chr7g0223731 58.889 540 187 5 19 527 74 609 0.0 626
Msa0244950 MtrunA17_Chr4g0073741 57.904 544 195 4 19 530 71 612 0.0 623
Msa0244950 MtrunA17_Chr7g0223751 58.106 549 193 6 19 534 74 618 0.0 622
Msa0244950 MtrunA17_Chr7g0223741 62.475 509 158 4 19 496 74 580 0.0 619
Msa0244950 MtrunA17_Chr7g0223701 58.318 547 188 6 19 527 74 618 0.0 619
Msa0244950 MtrunA17_Chr7g0248151 57.895 551 194 7 19 534 74 621 0.0 617
Msa0244950 MtrunA17_Chr7g0223621 57.963 540 192 5 19 527 74 609 0.0 612
Msa0244950 MtrunA17_Chr7g0248131 57.790 552 194 8 19 534 75 623 0.0 608
Msa0244950 MtrunA17_Chr7g0223631 58.470 549 177 8 19 534 74 604 0.0 597
Msa0244950 MtrunA17_Chr2g0293601 68.213 431 102 2 19 449 74 469 0.0 588
Msa0244950 MtrunA17_Chr1g0166551 58.891 523 95 6 44 534 69 503 0.0 558
Msa0244950 MtrunA17_Chr2g0331381 59.619 473 118 6 19 482 71 479 0.0 542
Msa0244950 MtrunA17_Chr6g0462611 51.866 509 211 4 19 496 22 527 6.90e-179 517
Msa0244950 MtrunA17_Chr6g0462681 52.446 511 207 5 19 496 72 579 1.02e-178 519
Msa0244950 MtrunA17_Chr2g0293561 77.409 301 68 0 19 319 74 374 6.39e-177 504
Msa0244950 MtrunA17_Chr6g0462601 52.549 510 208 4 19 496 72 579 8.13e-177 512
Msa0244950 MtrunA17_Chr2g0284681 50.091 549 220 7 19 529 71 603 7.33e-173 501
Msa0244950 MtrunA17_Chr6g0462711 51.048 525 218 5 19 506 74 596 6.70e-172 501
Msa0244950 MtrunA17_Chr6g0462641 48.909 550 241 6 19 531 72 618 4.26e-165 484
Msa0244950 MtrunA17_Chr6g0462771 48.364 550 244 6 19 531 72 618 2.57e-163 478
Msa0244950 MtrunA17_Chr8g0388761 47.419 523 236 8 19 507 101 618 1.15e-158 467
Msa0244950 MtrunA17_Chr8g0388671 47.419 523 236 8 19 507 101 618 2.17e-157 464
Msa0244950 MtrunA17_Chr7g0223761 63.158 380 64 5 186 533 3 338 2.24e-148 429
Msa0244950 MtrunA17_Chr2g0299821 63.609 338 118 3 3 338 59 393 7.97e-147 430
Msa0244950 MtrunA17_Chr2g0293271 58.377 382 88 4 19 400 96 406 2.66e-145 424
Msa0244950 MtrunA17_Chr2g0299921 67.802 323 102 1 19 341 1092 1412 1.05e-140 446
Msa0244950 MtrunA17_Chr2g0299921 67.296 318 101 2 19 335 1476 1791 1.04e-129 415
Msa0244950 MtrunA17_Chr2g0299791 67.089 316 102 1 19 334 1105 1418 2.78e-140 439
Msa0244950 MtrunA17_Chr2g0299851 63.664 333 116 2 3 335 1088 1415 6.20e-137 430
Msa0244950 MtrunA17_Chr2g0299881 63.095 336 115 3 3 334 1088 1418 2.72e-133 421
Msa0244950 MtrunA17_Chr2g0299881 58.904 73 28 1 125 195 1403 1475 2.73e-18 89.0
Msa0244950 MtrunA17_Chr6g0462861 42.058 554 268 7 19 531 63 604 1.97e-129 392
Msa0244950 MtrunA17_Chr2g0279901 47.403 462 217 9 3 458 107 548 5.01e-129 391
Msa0244950 MtrunA17_Chr4g0049501 46.469 439 217 6 20 454 118 542 1.06e-123 377
Msa0244950 MtrunA17_Chr1g0151991 74.348 230 54 1 7 236 67 291 2.28e-122 361
Msa0244950 MtrunA17_Chr7g0245531 60.256 312 90 4 250 530 2 310 1.85e-121 359
Msa0244950 MtrunA17_Chr1g0152001 61.765 306 82 5 260 534 1 302 5.53e-118 350
Msa0244950 MtrunA17_Chr2g0277021 44.978 458 228 10 1 452 120 559 1.37e-113 352
Msa0244950 MtrunA17_Chr7g0245521 79.000 200 42 0 19 218 74 273 2.03e-109 327
Msa0244950 MtrunA17_Chr1g0188601 79.058 191 40 0 37 227 1 191 3.03e-107 318
Msa0244950 MtrunA17_Chr7g0223671 73.892 203 47 2 12 210 3 203 5.99e-106 315
Msa0244950 MtrunA17_Chr6g0462631 50.962 312 110 3 45 355 22 291 7.80e-97 295
Msa0244950 MtrunA17_Chr7g0223771 86.928 153 20 0 38 190 1 153 1.68e-94 285
Msa0244950 MtrunA17_Chr6g0462751 47.059 340 120 4 19 355 19 301 2.78e-92 285
Msa0244950 MtrunA17_Chr1g0188611 53.898 295 96 4 267 530 1 286 8.83e-88 272
Msa0244950 MtrunA17_Chr4g0046881 78.723 141 27 1 80 220 14 151 1.21e-74 233
Msa0244950 MtrunA17_Chr7g0223861 82.443 131 23 0 23 153 4 134 5.43e-73 228
Msa0244950 MtrunA17_Chr6g0462791 61.143 175 67 1 54 228 2 175 1.37e-69 221
Msa0244950 MtrunA17_Chr5g0394391 32.102 433 279 8 19 441 94 521 1.47e-67 228
Msa0244950 MtrunA17_Chr4g0004331 32.648 389 244 5 18 390 65 451 2.15e-60 213
Msa0244950 MtrunA17_Chr2g0331901 31.989 372 239 4 18 377 65 434 1.30e-58 209
Msa0244950 MtrunA17_Chr7g0245541 51.232 203 66 3 363 534 1 201 7.11e-57 189
Msa0244950 MtrunA17_Chr3g0098761 31.564 358 240 4 18 374 65 418 1.00e-55 199
Msa0244950 MtrunA17_Chr5g0444001 31.694 366 243 4 18 378 65 428 3.80e-54 191
Msa0244950 MtrunA17_Chr3g0120101 27.851 456 290 10 18 441 92 540 2.01e-53 194
Msa0244950 MtrunA17_Chr6g0462701 53.216 171 56 1 45 215 22 168 2.21e-52 176
Msa0244950 MtrunA17_Chr4g0064621 32.522 452 277 13 19 452 211 652 1.73e-50 184
Msa0244950 MtrunA17_Chr4g0060241 31.148 427 249 13 36 443 106 506 1.47e-49 179
Msa0244950 MtrunA17_Chr4g0046871 73.786 103 26 1 281 383 6 107 4.44e-45 154
Msa0244950 MtrunA17_Chr5g0442171 31.212 330 206 9 115 434 1 319 1.33e-43 157
Msa0244950 MtrunA17_Chr6g0462691 51.748 143 67 2 267 408 1 142 5.92e-40 142
Msa0244950 MtrunA17_Chr5g0394221 39.095 243 127 8 225 453 40 275 5.13e-39 145
Msa0244950 MtrunA17_Chr5g0394231 35.965 228 95 4 18 244 4 181 4.46e-36 132
Msa0244950 MtrunA17_Chr6g0481391 66.327 98 28 1 7 104 39 131 1.17e-34 127
Msa0244950 MtrunA17_Chr6g0481381 72.973 74 20 0 121 194 1 74 6.42e-32 121
Msa0244950 MtrunA17_Chr6g0481381 59.740 77 31 0 450 526 94 170 2.73e-21 91.7
Msa0244950 MtrunA17_Chr7g0223881 57.317 82 34 1 226 307 2 82 4.74e-26 101
Msa0244950 MtrunA17_Chr7g0223661 46.667 120 20 2 260 379 1 76 1.09e-21 89.4
Msa0244950 MtrunA17_Chr7g0221651 48.193 83 43 0 160 242 1 83 4.83e-21 87.8
Msa0244950 MtrunA17_Chr7g0223871 50.000 90 45 0 441 530 41 130 4.75e-20 86.7
Msa0244950 MtrunA17_Chr6g0462801 62.121 66 20 1 267 327 1 66 4.93e-18 78.6
Msa0244950 MtrunA17_Chr7g0223791 63.077 65 22 2 17 81 28 90 9.85e-18 81.3
Msa0244950 MtrunA17_Chr7g0223791 47.826 92 17 1 428 488 89 180 3.25e-17 79.7
Msa0244950 MtrunA17_Chr2g0299891 71.111 45 13 0 260 304 1 45 7.32e-16 72.4
Msa0244950 MtrunA17_Chr2g0284661 51.190 84 39 2 313 395 61 143 1.55e-15 73.9
Msa0244950 MtrunA17_Chr4g0064651 38.710 93 56 1 342 434 29 120 3.25e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244950 AT3G12580.1 59.559 544 186 4 19 530 72 613 0.0 636
Msa0244950 AT5G02500.1 59.191 544 188 4 19 530 72 613 0.0 634
Msa0244950 AT5G02490.1 58.272 544 193 4 19 530 72 613 0.0 623
Msa0244950 AT3G09440.1 57.353 544 198 4 19 530 72 613 0.0 612
Msa0244950 AT3G09440.4 57.353 544 198 4 19 530 72 613 0.0 612
Msa0244950 AT3G09440.2 57.353 544 198 4 19 530 72 613 0.0 612
Msa0244950 AT3G09440.3 57.353 544 198 4 19 530 72 613 0.0 612
Msa0244950 AT1G16030.1 57.169 544 199 4 19 530 71 612 0.0 608
Msa0244950 AT1G56410.1 57.904 544 193 5 19 530 72 611 0.0 605
Msa0244950 AT5G02500.2 74.367 316 81 0 19 334 72 387 1.23e-172 498
Msa0244950 AT5G28540.1 46.886 546 250 8 19 530 100 639 5.34e-161 473
Msa0244950 AT5G42020.1 46.703 546 251 8 19 530 100 639 2.83e-160 472
Msa0244950 AT5G42020.3 46.703 546 251 8 19 530 105 644 7.37e-160 471
Msa0244950 AT1G09080.2 55.245 429 186 4 19 446 105 528 2.09e-159 469
Msa0244950 AT1G09080.1 55.245 429 186 4 19 446 115 538 2.21e-159 469
Msa0244950 AT5G42020.2 47.379 515 238 8 19 530 100 584 8.57e-153 451
Msa0244950 AT5G09590.1 44.351 478 240 8 18 491 122 577 5.80e-121 371
Msa0244950 AT4G37910.1 46.476 454 222 8 3 452 105 541 9.84e-119 365
Msa0244950 AT4G37910.2 46.476 454 222 8 3 452 105 541 9.84e-119 365
Msa0244950 AT4G24280.1 45.197 458 227 10 1 452 129 568 1.30e-114 355
Msa0244950 AT5G49910.1 45.197 458 227 10 1 452 129 568 4.22e-113 352
Msa0244950 AT2G32120.1 33.043 460 279 11 19 466 95 537 8.38e-66 223
Msa0244950 AT2G32120.2 33.043 460 279 11 19 466 95 537 8.38e-66 223
Msa0244950 AT1G79930.2 31.877 389 247 5 18 390 65 451 2.03e-60 213
Msa0244950 AT1G79930.1 31.877 389 247 5 18 390 65 451 5.12e-60 213
Msa0244950 AT1G79920.3 32.134 389 246 5 18 390 65 451 7.43e-60 211
Msa0244950 AT1G79920.2 32.134 389 246 5 18 390 65 451 7.43e-60 211
Msa0244950 AT1G79920.4 32.134 389 246 5 18 390 65 451 7.43e-60 211
Msa0244950 AT1G79920.1 32.134 389 246 5 18 390 65 451 8.22e-60 211
Msa0244950 AT1G11660.2 34.211 342 219 4 18 356 28 366 4.78e-59 208
Msa0244950 AT1G11660.4 34.211 342 219 4 18 356 65 403 8.71e-59 208
Msa0244950 AT1G11660.3 34.211 342 219 4 18 356 65 403 8.71e-59 208
Msa0244950 AT1G11660.1 34.211 342 219 4 18 356 65 403 8.71e-59 208
Msa0244950 AT4G16660.1 27.912 455 290 11 18 441 92 539 4.61e-55 199
Msa0244950 AT4G16660.2 27.912 455 290 11 18 441 116 563 4.82e-55 199

Find 117 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAATAGTTCCTGCACTTT+TGG 0.163788 2_2:+23807794 None:intergenic
GGAGATTGCAGAGGCTTATT+TGG 0.170727 2_2:-23808446 Msa0244950:CDS
ATGGATGCTGGTGCCATTGC+TGG 0.234093 2_2:-23808355 Msa0244950:CDS
TCAGATACTAAGAGGTTAAT+TGG 0.246077 2_2:-23808631 Msa0244950:CDS
GTGTCTCTCCTCACAATTAA+AGG 0.259274 2_2:-23808205 Msa0244950:CDS
CCTGACGAGGCTGTTGCTTA+TGG 0.270322 2_2:-23807731 Msa0244950:CDS
TTTGAAGTTAAAGCCACTTC+TGG 0.288192 2_2:-23808175 Msa0244950:CDS
AAGGACACTCTCTTTCAAAT+TGG 0.288998 2_2:-23808011 Msa0244950:CDS
ACTTTGTGCAAGAATTTAAT+AGG 0.318140 2_2:-23808105 Msa0244950:CDS
GAGGAATGCTCTAAAGAATA+AGG 0.327995 2_2:-23807190 Msa0244950:CDS
TATCTTTAGAAGTAAGATAT+TGG 0.330640 2_2:+23807546 None:intergenic
TCTTCATACACTCATTAAAA+AGG 0.345773 2_2:+23807900 None:intergenic
CCCATTGTCATTTGGTATCT+CGG 0.365151 2_2:-23807636 Msa0244950:CDS
CTGACGAGGCTGTTGCTTAT+GGG 0.367721 2_2:-23807730 Msa0244950:CDS
TGGCCGTTCAAGGTTATTGC+TGG 0.368855 2_2:-23808565 Msa0244950:CDS
CTATTGCGTAATTTCTTCAA+TGG 0.385526 2_2:-23807779 Msa0244950:CDS
CTACAATCAAGGCACTATAT+TGG 0.386508 2_2:+23807522 None:intergenic
CTCAACCTCCTCAAGGCTCT+TGG 0.389032 2_2:+23808055 None:intergenic
ACGTCTCGCAGCACCAAGTT+TGG 0.390269 2_2:+23807662 None:intergenic
GACGTTACCCCATTGTCATT+TGG 0.398190 2_2:-23807644 Msa0244950:CDS
CATTAAGAATGTTCCAAACT+TGG 0.400175 2_2:-23807675 Msa0244950:CDS
CCATAAGCAACAGCCTCGTC+AGG 0.402169 2_2:+23807731 None:intergenic
TGAGATTGATTATTTATATG+AGG 0.407076 2_2:-23807978 Msa0244950:CDS
TCCTCGTCGTGGCCATCCCT+TGG 0.423207 2_2:-23807423 Msa0244950:CDS
TGATTATCTTCACAACGTTA+AGG 0.432196 2_2:+23808332 None:intergenic
GAACACCTTGTAATCAATAC+TGG 0.437159 2_2:-23807024 Msa0244950:CDS
TATACTGTTGTGGCCGTTCA+AGG 0.449502 2_2:-23808575 Msa0244950:CDS
TATTGCGTAATTTCTTCAAT+GGG 0.454198 2_2:-23807778 Msa0244950:CDS
TAAATAATCAATCTCAATAG+TGG 0.454560 2_2:+23807985 None:intergenic
TTGTCTTTGATCTTGGTGGT+GGG 0.456314 2_2:-23808237 Msa0244950:CDS
TTTGTCTTTGATCTTGGTGG+TGG 0.458128 2_2:-23808238 Msa0244950:CDS
GTTGAGAACTTCTTGTGAAA+AGG 0.462126 2_2:-23808038 Msa0244950:CDS
CCGAGATACCAAATGACAAT+GGG 0.462353 2_2:+23807636 None:intergenic
ACTGCTGCAGCTATTGCATA+TGG 0.476452 2_2:-23808301 Msa0244950:CDS
CTTCTGGAAACACTCACCTC+GGG 0.477285 2_2:-23808159 Msa0244950:CDS
TTCTTGAAGATCATCTGAAA+GGG 0.479275 2_2:-23807062 Msa0244950:CDS
AAGAAGATGAGAAATTCTTA+AGG 0.480254 2_2:-23807257 Msa0244950:CDS
TTTAGAAGTAAGATATTGGC+TGG 0.480975 2_2:+23807550 None:intergenic
TTCTTGTCGGTGGCTCGTCT+AGG 0.487944 2_2:-23807820 Msa0244950:CDS
ATCTAATGCATTCATTACCT+TGG 0.490089 2_2:+23807230 None:intergenic
TTATGAGTGTGGTGATTCCT+AGG 0.490594 2_2:-23807598 Msa0244950:CDS
CTTCTTGTGAAAAGGCGAAA+AGG 0.494676 2_2:-23808030 Msa0244950:CDS
GTACATGATATTGTTCTTGT+CGG 0.498157 2_2:-23807833 Msa0244950:CDS
TGAGAATCGTTAAAATAAGC+AGG 0.500441 2_2:+23808391 None:intergenic
ATGACTGCATTTACAAGTTG+AGG 0.500475 2_2:-23807209 Msa0244950:CDS
TAGTGTTAAGTACAAGGGTC+AGG 0.501144 2_2:-23808521 Msa0244950:CDS
CGAAAAGCCACCATGGATGC+TGG 0.502548 2_2:-23808367 Msa0244950:CDS
TATTGGCTGGTCTTCTTGAA+AGG 0.508102 2_2:+23807563 None:intergenic
ACGAGGAACACTTGGAAGAC+CGG 0.511827 2_2:+23807439 None:intergenic
GCCTTGATTGTAGTTTGTGA+GGG 0.515295 2_2:-23807512 Msa0244950:CDS
TGGCCACGACGAGGAACACT+TGG 0.518133 2_2:+23807431 None:intergenic
ATACTAAGAGGTTAATTGGT+AGG 0.520603 2_2:-23808627 Msa0244950:CDS
GTGAGTGACAACAACGTGCT+TGG 0.521927 2_2:-23807476 Msa0244950:CDS
TGCTTTGCTATCGATGAAAA+CGG 0.522627 2_2:-23807395 Msa0244950:CDS
GTCTAGGATTCCAAAAGTGC+AGG 0.532443 2_2:-23807804 Msa0244950:CDS
GAACATCTACTTCATTCCCC+TGG 0.535646 2_2:+23807082 None:intergenic
GAGGTGAGTGTTTCCAGAAG+TGG 0.537456 2_2:+23808162 None:intergenic
AAAGGTACAGAAGTGTTCCT+AGG 0.538214 2_2:+23807581 None:intergenic
GTTCTTGAAGATCATCTGAA+AGG 0.538300 2_2:-23807063 Msa0244950:CDS
ACCCTCACAAACTACAATCA+AGG 0.539796 2_2:+23807511 None:intergenic
ACTAGCCAGTATTGATTACA+AGG 0.539801 2_2:+23807019 None:intergenic
AGCAATGGCACCAGCATCCA+TGG 0.539868 2_2:+23808357 None:intergenic
GCGTAATTTCTTCAATGGGA+AGG 0.541000 2_2:-23807774 Msa0244950:CDS
TGCCTTGATTGTAGTTTGTG+AGG 0.542190 2_2:-23807513 Msa0244950:CDS
AATCTCATTCTTACTTCCAG+TGG 0.544318 2_2:+23807343 None:intergenic
CATCTTAACTGTTTCTGCAA+AGG 0.547614 2_2:-23807372 Msa0244950:CDS
TTGTAGTTTGTGAGGGTGAG+AGG 0.551491 2_2:-23807505 Msa0244950:CDS
TCTGCAAAGGAAAGATCCAC+TGG 0.556269 2_2:-23807359 Msa0244950:CDS
TGACGAGGCTGTTGCTTATG+GGG 0.558551 2_2:-23807729 Msa0244950:CDS
TACGATTAGTGTTAAGTACA+AGG 0.559474 2_2:-23808527 Msa0244950:CDS
GAAAGGGCTTGAGAGTATGT+TGG 0.565506 2_2:-23807046 Msa0244950:CDS
GATTGTTGAAAGTTGTCTTG+TGG 0.568361 2_2:-23807879 Msa0244950:CDS
ATCGTTAAAATAAGCAGGAA+CGG 0.570371 2_2:+23808396 None:intergenic
CAATCTCCTTCATGTTTGTG+AGG 0.570747 2_2:+23808461 None:intergenic
TGTAGTTTGTGAGGGTGAGA+GGG 0.579578 2_2:-23807504 Msa0244950:CDS
ACTTCTGGAAACACTCACCT+CGG 0.583908 2_2:-23808160 Msa0244950:CDS
AGAGGCTTATTTGGAATCGC+CGG 0.587154 2_2:-23808437 Msa0244950:CDS
AGATGAGAAATTCTTAAGGA+AGG 0.587632 2_2:-23807253 Msa0244950:CDS
TTGTACTTAACACTAATCGT+AGG 0.591476 2_2:+23808529 None:intergenic
ATATGCAATAGCTGCAGCAG+TGG 0.594040 2_2:+23808303 None:intergenic
AGAACAAAGTGGATATCACT+AGG 0.600332 2_2:-23808081 Msa0244950:CDS
TATTGTCCTCACAAACATGA+AGG 0.601761 2_2:-23808467 Msa0244950:CDS
TATGCAATAGCTGCAGCAGT+GGG 0.602359 2_2:+23808304 None:intergenic
TTGCTTCATAAGAATAACCA+GGG 0.605023 2_2:-23807099 Msa0244950:CDS
GATAGCAAAGCATACATCCA+AGG 0.607442 2_2:+23807406 None:intergenic
CACAACGTTAAGGCCAGCAA+TGG 0.608818 2_2:+23808342 None:intergenic
CATGATATTGTTCTTGTCGG+TGG 0.608819 2_2:-23807830 Msa0244950:CDS
ATTTAATAGGAAGAACAAAG+TGG 0.609345 2_2:-23808092 Msa0244950:CDS
TTTGCTTCATAAGAATAACC+AGG 0.610100 2_2:-23807100 Msa0244950:CDS
AGACATCACCTTTAATTGTG+AGG 0.611395 2_2:+23808197 None:intergenic
ACACCAGCAATAACCTTGAA+CGG 0.614534 2_2:+23808562 None:intergenic
ATAGCAAAGCATACATCCAA+GGG 0.619096 2_2:+23807407 None:intergenic
TTCTCAGCGAAAAGCCACCA+TGG 0.620029 2_2:-23808374 Msa0244950:CDS
ACCGAGATACCAAATGACAA+TGG 0.622533 2_2:+23807635 None:intergenic
TTCTGGAAACACTCACCTCG+GGG 0.622900 2_2:-23808158 Msa0244950:CDS
CAAGCTGCTGTGTTGAGTGA+AGG 0.627003 2_2:-23807698 Msa0244950:CDS
CAAAGCATACATCCAAGGGA+TGG 0.629656 2_2:+23807411 None:intergenic
CAAGAGCATCAACCCTGACG+AGG 0.630814 2_2:-23807744 Msa0244950:CDS
CAAGTTTGAAGAAATCAACA+TGG 0.636916 2_2:-23807924 Msa0244950:CDS
GGAGAAGCTCCTTTGTGCAG+AGG 0.636950 2_2:-23808500 Msa0244950:CDS
CTTCCAAGTGTTCCTCGTCG+TGG 0.643859 2_2:-23807434 Msa0244950:CDS
ATGAGATTTCCTCTGCACAA+AGG 0.646200 2_2:+23808491 None:intergenic
AGAAGTTCTCAACCTCCTCA+AGG 0.646239 2_2:+23808048 None:intergenic
GACAAAAGAAGTAATTGTGA+TGG 0.650690 2_2:-23808274 Msa0244950:CDS
CATAAGCAACAGCCTCGTCA+GGG 0.652558 2_2:+23807732 None:intergenic
CTAGGAATCCAAGAGCCTTG+AGG 0.655232 2_2:-23808063 Msa0244950:CDS
GAAATTCTTAAGGAAGGCCA+AGG 0.662766 2_2:-23807247 Msa0244950:CDS
GGAATCCAAGAGCCTTGAGG+AGG 0.663076 2_2:-23808060 Msa0244950:CDS
GATCAATCGTGCAATTACTG+TGG 0.674376 2_2:-23807130 Msa0244950:CDS
ACGATTAGTGTTAAGTACAA+GGG 0.676520 2_2:-23808526 Msa0244950:CDS
TAATGATCGTATTATGAGTG+TGG 0.677159 2_2:-23807609 Msa0244950:CDS
TCCAAGGGATGGCCACGACG+AGG 0.686495 2_2:+23807422 None:intergenic
AAACATGAAGGAGATTGCAG+AGG 0.695775 2_2:-23808455 Msa0244950:CDS
TGCTTCATAAGAATAACCAG+GGG 0.713870 2_2:-23807098 Msa0244950:CDS
CGAGATACCAAATGACAATG+GGG 0.715816 2_2:+23807637 None:intergenic
TCTGGAAACACTCACCTCGG+GGG 0.720115 2_2:-23808157 Msa0244950:CDS
AATGGCACCAGCATCCATGG+TGG 0.736459 2_2:+23808360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTGTCTTTGATCT+TGG - chr2_2:23807458-23807477 Msa0244950:CDS 20.0%
!! TAAATAATCAATCTCAATAG+TGG + chr2_2:23807720-23807739 None:intergenic 20.0%
!! TGAGATTGATTATTTATATG+AGG - chr2_2:23807724-23807743 Msa0244950:CDS 20.0%
!!! TATCTTTAGAAGTAAGATAT+TGG + chr2_2:23808159-23808178 None:intergenic 20.0%
!!! AATATTTTTGTCTTTGATCT+TGG - chr2_2:23807458-23807477 Msa0244950:CDS 20.0%
!! TAAATAATCAATCTCAATAG+TGG + chr2_2:23807720-23807739 None:intergenic 20.0%
!! TGAGATTGATTATTTATATG+AGG - chr2_2:23807724-23807743 Msa0244950:CDS 20.0%
!!! TATCTTTAGAAGTAAGATAT+TGG + chr2_2:23808159-23808178 None:intergenic 20.0%
!!! TTTTTTCTTCAGATACTAAG+AGG - chr2_2:23807063-23807082 Msa0244950:CDS 25.0%
! TTCAAAAAGATATACTGTTG+TGG - chr2_2:23807117-23807136 Msa0244950:CDS 25.0%
! ACTTTGTGCAAGAATTTAAT+AGG - chr2_2:23807597-23807616 Msa0244950:CDS 25.0%
! ATTTAATAGGAAGAACAAAG+TGG - chr2_2:23807610-23807629 Msa0244950:CDS 25.0%
! TCTTCATACACTCATTAAAA+AGG + chr2_2:23807805-23807824 None:intergenic 25.0%
! TATTGCGTAATTTCTTCAAT+GGG - chr2_2:23807924-23807943 Msa0244950:CDS 25.0%
! AAGAAGATGAGAAATTCTTA+AGG - chr2_2:23808445-23808464 Msa0244950:CDS 25.0%
!!! TTTTTTCTTCAGATACTAAG+AGG - chr2_2:23807063-23807082 Msa0244950:CDS 25.0%
! TTCAAAAAGATATACTGTTG+TGG - chr2_2:23807117-23807136 Msa0244950:CDS 25.0%
! ACTTTGTGCAAGAATTTAAT+AGG - chr2_2:23807597-23807616 Msa0244950:CDS 25.0%
! ATTTAATAGGAAGAACAAAG+TGG - chr2_2:23807610-23807629 Msa0244950:CDS 25.0%
! TCTTCATACACTCATTAAAA+AGG + chr2_2:23807805-23807824 None:intergenic 25.0%
! TATTGCGTAATTTCTTCAAT+GGG - chr2_2:23807924-23807943 Msa0244950:CDS 25.0%
! AAGAAGATGAGAAATTCTTA+AGG - chr2_2:23808445-23808464 Msa0244950:CDS 25.0%
TCAGATACTAAGAGGTTAAT+TGG - chr2_2:23807071-23807090 Msa0244950:CDS 30.0%
ATACTAAGAGGTTAATTGGT+AGG - chr2_2:23807075-23807094 Msa0244950:CDS 30.0%
TTGTACTTAACACTAATCGT+AGG + chr2_2:23807176-23807195 None:intergenic 30.0%
TACGATTAGTGTTAAGTACA+AGG - chr2_2:23807175-23807194 Msa0244950:CDS 30.0%
ACGATTAGTGTTAAGTACAA+GGG - chr2_2:23807176-23807195 Msa0244950:CDS 30.0%
ATCGTTAAAATAAGCAGGAA+CGG + chr2_2:23807309-23807328 None:intergenic 30.0%
TGAGAATCGTTAAAATAAGC+AGG + chr2_2:23807314-23807333 None:intergenic 30.0%
TGATTATCTTCACAACGTTA+AGG + chr2_2:23807373-23807392 None:intergenic 30.0%
! CACAATTACTTCTTTTGTCA+AGG + chr2_2:23807427-23807446 None:intergenic 30.0%
GACAAAAGAAGTAATTGTGA+TGG - chr2_2:23807428-23807447 Msa0244950:CDS 30.0%
! ATTTTTGTCTTTGATCTTGG+TGG - chr2_2:23807461-23807480 Msa0244950:CDS 30.0%
CAAGTTTGAAGAAATCAACA+TGG - chr2_2:23807778-23807797 Msa0244950:CDS 30.0%
GTACATGATATTGTTCTTGT+CGG - chr2_2:23807869-23807888 Msa0244950:CDS 30.0%
CTATTGCGTAATTTCTTCAA+TGG - chr2_2:23807923-23807942 Msa0244950:CDS 30.0%
CATTAAGAATGTTCCAAACT+TGG - chr2_2:23808027-23808046 Msa0244950:CDS 30.0%
TAATGATCGTATTATGAGTG+TGG - chr2_2:23808093-23808112 Msa0244950:CDS 30.0%
TTTAGAAGTAAGATATTGGC+TGG + chr2_2:23808155-23808174 None:intergenic 30.0%
!! CAATTTTTCAATTTCGACTC+TGG + chr2_2:23808413-23808432 None:intergenic 30.0%
AGATGAGAAATTCTTAAGGA+AGG - chr2_2:23808449-23808468 Msa0244950:CDS 30.0%
ATCTAATGCATTCATTACCT+TGG + chr2_2:23808475-23808494 None:intergenic 30.0%
TTTGCTTCATAAGAATAACC+AGG - chr2_2:23808602-23808621 Msa0244950:CDS 30.0%
TTGCTTCATAAGAATAACCA+GGG - chr2_2:23808603-23808622 Msa0244950:CDS 30.0%
TTCTTGAAGATCATCTGAAA+GGG - chr2_2:23808640-23808659 Msa0244950:CDS 30.0%
TCAGATACTAAGAGGTTAAT+TGG - chr2_2:23807071-23807090 Msa0244950:CDS 30.0%
ATACTAAGAGGTTAATTGGT+AGG - chr2_2:23807075-23807094 Msa0244950:CDS 30.0%
TTGTACTTAACACTAATCGT+AGG + chr2_2:23807176-23807195 None:intergenic 30.0%
TACGATTAGTGTTAAGTACA+AGG - chr2_2:23807175-23807194 Msa0244950:CDS 30.0%
ACGATTAGTGTTAAGTACAA+GGG - chr2_2:23807176-23807195 Msa0244950:CDS 30.0%
ATCGTTAAAATAAGCAGGAA+CGG + chr2_2:23807309-23807328 None:intergenic 30.0%
TGAGAATCGTTAAAATAAGC+AGG + chr2_2:23807314-23807333 None:intergenic 30.0%
TGATTATCTTCACAACGTTA+AGG + chr2_2:23807373-23807392 None:intergenic 30.0%
! CACAATTACTTCTTTTGTCA+AGG + chr2_2:23807427-23807446 None:intergenic 30.0%
GACAAAAGAAGTAATTGTGA+TGG - chr2_2:23807428-23807447 Msa0244950:CDS 30.0%
! ATTTTTGTCTTTGATCTTGG+TGG - chr2_2:23807461-23807480 Msa0244950:CDS 30.0%
CAAGTTTGAAGAAATCAACA+TGG - chr2_2:23807778-23807797 Msa0244950:CDS 30.0%
GTACATGATATTGTTCTTGT+CGG - chr2_2:23807869-23807888 Msa0244950:CDS 30.0%
CTATTGCGTAATTTCTTCAA+TGG - chr2_2:23807923-23807942 Msa0244950:CDS 30.0%
CATTAAGAATGTTCCAAACT+TGG - chr2_2:23808027-23808046 Msa0244950:CDS 30.0%
TAATGATCGTATTATGAGTG+TGG - chr2_2:23808093-23808112 Msa0244950:CDS 30.0%
TTTAGAAGTAAGATATTGGC+TGG + chr2_2:23808155-23808174 None:intergenic 30.0%
!! CAATTTTTCAATTTCGACTC+TGG + chr2_2:23808413-23808432 None:intergenic 30.0%
AGATGAGAAATTCTTAAGGA+AGG - chr2_2:23808449-23808468 Msa0244950:CDS 30.0%
ATCTAATGCATTCATTACCT+TGG + chr2_2:23808475-23808494 None:intergenic 30.0%
TTTGCTTCATAAGAATAACC+AGG - chr2_2:23808602-23808621 Msa0244950:CDS 30.0%
TTGCTTCATAAGAATAACCA+GGG - chr2_2:23808603-23808622 Msa0244950:CDS 30.0%
TTCTTGAAGATCATCTGAAA+GGG - chr2_2:23808640-23808659 Msa0244950:CDS 30.0%
TATTGTCCTCACAAACATGA+AGG - chr2_2:23807235-23807254 Msa0244950:CDS 35.0%
! GTGACAACTGCATTTTTAAC+CGG + chr2_2:23807287-23807306 None:intergenic 35.0%
AGACATCACCTTTAATTGTG+AGG + chr2_2:23807508-23807527 None:intergenic 35.0%
! TTTGAAGTTAAAGCCACTTC+TGG - chr2_2:23807527-23807546 Msa0244950:CDS 35.0%
AGAACAAAGTGGATATCACT+AGG - chr2_2:23807621-23807640 Msa0244950:CDS 35.0%
GTTGAGAACTTCTTGTGAAA+AGG - chr2_2:23807664-23807683 Msa0244950:CDS 35.0%
AAGGACACTCTCTTTCAAAT+TGG - chr2_2:23807691-23807710 Msa0244950:CDS 35.0%
GATTGTTGAAAGTTGTCTTG+TGG - chr2_2:23807823-23807842 Msa0244950:CDS 35.0%
! CTACAATCAAGGCACTATAT+TGG + chr2_2:23808183-23808202 None:intergenic 35.0%
!!! CTTGGTTTTTTCAGTCTTTC+CGG - chr2_2:23808244-23808263 Msa0244950:CDS 35.0%
ATAGCAAAGCATACATCCAA+GGG + chr2_2:23808298-23808317 None:intergenic 35.0%
! TGCTTTGCTATCGATGAAAA+CGG - chr2_2:23808307-23808326 Msa0244950:CDS 35.0%
!! CATCTTAACTGTTTCTGCAA+AGG - chr2_2:23808330-23808349 Msa0244950:CDS 35.0%
AATCTCATTCTTACTTCCAG+TGG + chr2_2:23808362-23808381 None:intergenic 35.0%
CGATAACCAATGACAAAGAA+AGG - chr2_2:23808383-23808402 Msa0244950:CDS 35.0%
GGATAACCTTTCTTTGTCAT+TGG + chr2_2:23808392-23808411 None:intergenic 35.0%
ATGACTGCATTTACAAGTTG+AGG - chr2_2:23808493-23808512 Msa0244950:CDS 35.0%
!! GAGGAATGCTCTAAAGAATA+AGG - chr2_2:23808512-23808531 Msa0244950:CDS 35.0%
TGCTTCATAAGAATAACCAG+GGG - chr2_2:23808604-23808623 Msa0244950:CDS 35.0%
GTTCTTGAAGATCATCTGAA+AGG - chr2_2:23808639-23808658 Msa0244950:CDS 35.0%
GAACACCTTGTAATCAATAC+TGG - chr2_2:23808678-23808697 Msa0244950:CDS 35.0%
TATTGTCCTCACAAACATGA+AGG - chr2_2:23807235-23807254 Msa0244950:CDS 35.0%
! GTGACAACTGCATTTTTAAC+CGG + chr2_2:23807287-23807306 None:intergenic 35.0%
AGACATCACCTTTAATTGTG+AGG + chr2_2:23807508-23807527 None:intergenic 35.0%
! TTTGAAGTTAAAGCCACTTC+TGG - chr2_2:23807527-23807546 Msa0244950:CDS 35.0%
AGAACAAAGTGGATATCACT+AGG - chr2_2:23807621-23807640 Msa0244950:CDS 35.0%
GTTGAGAACTTCTTGTGAAA+AGG - chr2_2:23807664-23807683 Msa0244950:CDS 35.0%
AAGGACACTCTCTTTCAAAT+TGG - chr2_2:23807691-23807710 Msa0244950:CDS 35.0%
GATTGTTGAAAGTTGTCTTG+TGG - chr2_2:23807823-23807842 Msa0244950:CDS 35.0%
! CTACAATCAAGGCACTATAT+TGG + chr2_2:23808183-23808202 None:intergenic 35.0%
!!! CTTGGTTTTTTCAGTCTTTC+CGG - chr2_2:23808244-23808263 Msa0244950:CDS 35.0%
ATAGCAAAGCATACATCCAA+GGG + chr2_2:23808298-23808317 None:intergenic 35.0%
! TGCTTTGCTATCGATGAAAA+CGG - chr2_2:23808307-23808326 Msa0244950:CDS 35.0%
!! CATCTTAACTGTTTCTGCAA+AGG - chr2_2:23808330-23808349 Msa0244950:CDS 35.0%
AATCTCATTCTTACTTCCAG+TGG + chr2_2:23808362-23808381 None:intergenic 35.0%
CGATAACCAATGACAAAGAA+AGG - chr2_2:23808383-23808402 Msa0244950:CDS 35.0%
GGATAACCTTTCTTTGTCAT+TGG + chr2_2:23808392-23808411 None:intergenic 35.0%
ATGACTGCATTTACAAGTTG+AGG - chr2_2:23808493-23808512 Msa0244950:CDS 35.0%
!! GAGGAATGCTCTAAAGAATA+AGG - chr2_2:23808512-23808531 Msa0244950:CDS 35.0%
TGCTTCATAAGAATAACCAG+GGG - chr2_2:23808604-23808623 Msa0244950:CDS 35.0%
GTTCTTGAAGATCATCTGAA+AGG - chr2_2:23808639-23808658 Msa0244950:CDS 35.0%
GAACACCTTGTAATCAATAC+TGG - chr2_2:23808678-23808697 Msa0244950:CDS 35.0%
ACACCAGCAATAACCTTGAA+CGG + chr2_2:23807143-23807162 None:intergenic 40.0%
TAGTGTTAAGTACAAGGGTC+AGG - chr2_2:23807181-23807200 Msa0244950:CDS 40.0%
ATGAGATTTCCTCTGCACAA+AGG + chr2_2:23807214-23807233 None:intergenic 40.0%
CAATCTCCTTCATGTTTGTG+AGG + chr2_2:23807244-23807263 None:intergenic 40.0%
AAACATGAAGGAGATTGCAG+AGG - chr2_2:23807247-23807266 Msa0244950:CDS 40.0%
TTTGTCTTTGATCTTGGTGG+TGG - chr2_2:23807464-23807483 Msa0244950:CDS 40.0%
! TTGTCTTTGATCTTGGTGGT+GGG - chr2_2:23807465-23807484 Msa0244950:CDS 40.0%
GTGTCTCTCCTCACAATTAA+AGG - chr2_2:23807497-23807516 Msa0244950:CDS 40.0%
CTTCTTGTGAAAAGGCGAAA+AGG - chr2_2:23807672-23807691 Msa0244950:CDS 40.0%
CATGATATTGTTCTTGTCGG+TGG - chr2_2:23807872-23807891 Msa0244950:CDS 40.0%
GCGTAATTTCTTCAATGGGA+AGG - chr2_2:23807928-23807947 Msa0244950:CDS 40.0%
CGAGATACCAAATGACAATG+GGG + chr2_2:23808068-23808087 None:intergenic 40.0%
CCGAGATACCAAATGACAAT+GGG + chr2_2:23808069-23808088 None:intergenic 40.0%
! CCCATTGTCATTTGGTATCT+CGG - chr2_2:23808066-23808085 Msa0244950:CDS 40.0%
ACCGAGATACCAAATGACAA+TGG + chr2_2:23808070-23808089 None:intergenic 40.0%
TTATGAGTGTGGTGATTCCT+AGG - chr2_2:23808104-23808123 Msa0244950:CDS 40.0%
!! AAAGGTACAGAAGTGTTCCT+AGG + chr2_2:23808124-23808143 None:intergenic 40.0%
!! TATTGGCTGGTCTTCTTGAA+AGG + chr2_2:23808142-23808161 None:intergenic 40.0%
! TGCCTTGATTGTAGTTTGTG+AGG - chr2_2:23808189-23808208 Msa0244950:CDS 40.0%
! GCCTTGATTGTAGTTTGTGA+GGG - chr2_2:23808190-23808209 Msa0244950:CDS 40.0%
ACCCTCACAAACTACAATCA+AGG + chr2_2:23808194-23808213 None:intergenic 40.0%
GATAGCAAAGCATACATCCA+AGG + chr2_2:23808299-23808318 None:intergenic 40.0%
GAAATTCTTAAGGAAGGCCA+AGG - chr2_2:23808455-23808474 Msa0244950:CDS 40.0%
GATCAATCGTGCAATTACTG+TGG - chr2_2:23808572-23808591 Msa0244950:CDS 40.0%
ACACCAGCAATAACCTTGAA+CGG + chr2_2:23807143-23807162 None:intergenic 40.0%
TAGTGTTAAGTACAAGGGTC+AGG - chr2_2:23807181-23807200 Msa0244950:CDS 40.0%
ATGAGATTTCCTCTGCACAA+AGG + chr2_2:23807214-23807233 None:intergenic 40.0%
CAATCTCCTTCATGTTTGTG+AGG + chr2_2:23807244-23807263 None:intergenic 40.0%
AAACATGAAGGAGATTGCAG+AGG - chr2_2:23807247-23807266 Msa0244950:CDS 40.0%
TTTGTCTTTGATCTTGGTGG+TGG - chr2_2:23807464-23807483 Msa0244950:CDS 40.0%
! TTGTCTTTGATCTTGGTGGT+GGG - chr2_2:23807465-23807484 Msa0244950:CDS 40.0%
GTGTCTCTCCTCACAATTAA+AGG - chr2_2:23807497-23807516 Msa0244950:CDS 40.0%
CTTCTTGTGAAAAGGCGAAA+AGG - chr2_2:23807672-23807691 Msa0244950:CDS 40.0%
CATGATATTGTTCTTGTCGG+TGG - chr2_2:23807872-23807891 Msa0244950:CDS 40.0%
GCGTAATTTCTTCAATGGGA+AGG - chr2_2:23807928-23807947 Msa0244950:CDS 40.0%
CGAGATACCAAATGACAATG+GGG + chr2_2:23808068-23808087 None:intergenic 40.0%
CCGAGATACCAAATGACAAT+GGG + chr2_2:23808069-23808088 None:intergenic 40.0%
! CCCATTGTCATTTGGTATCT+CGG - chr2_2:23808066-23808085 Msa0244950:CDS 40.0%
ACCGAGATACCAAATGACAA+TGG + chr2_2:23808070-23808089 None:intergenic 40.0%
TTATGAGTGTGGTGATTCCT+AGG - chr2_2:23808104-23808123 Msa0244950:CDS 40.0%
!! AAAGGTACAGAAGTGTTCCT+AGG + chr2_2:23808124-23808143 None:intergenic 40.0%
!! TATTGGCTGGTCTTCTTGAA+AGG + chr2_2:23808142-23808161 None:intergenic 40.0%
! TGCCTTGATTGTAGTTTGTG+AGG - chr2_2:23808189-23808208 Msa0244950:CDS 40.0%
! GCCTTGATTGTAGTTTGTGA+GGG - chr2_2:23808190-23808209 Msa0244950:CDS 40.0%
ACCCTCACAAACTACAATCA+AGG + chr2_2:23808194-23808213 None:intergenic 40.0%
GATAGCAAAGCATACATCCA+AGG + chr2_2:23808299-23808318 None:intergenic 40.0%
GAAATTCTTAAGGAAGGCCA+AGG - chr2_2:23808455-23808474 Msa0244950:CDS 40.0%
GATCAATCGTGCAATTACTG+TGG - chr2_2:23808572-23808591 Msa0244950:CDS 40.0%
TATACTGTTGTGGCCGTTCA+AGG - chr2_2:23807127-23807146 Msa0244950:CDS 45.0%
GGAGATTGCAGAGGCTTATT+TGG - chr2_2:23807256-23807275 Msa0244950:CDS 45.0%
! AGAGGCTTATTTGGAATCGC+CGG - chr2_2:23807265-23807284 Msa0244950:intron 45.0%
TATGCAATAGCTGCAGCAGT+GGG + chr2_2:23807401-23807420 None:intergenic 45.0%
ATATGCAATAGCTGCAGCAG+TGG + chr2_2:23807402-23807421 None:intergenic 45.0%
ACTGCTGCAGCTATTGCATA+TGG - chr2_2:23807401-23807420 Msa0244950:CDS 45.0%
! ACTTCTGGAAACACTCACCT+CGG - chr2_2:23807542-23807561 Msa0244950:CDS 45.0%
AGAAGTTCTCAACCTCCTCA+AGG + chr2_2:23807657-23807676 None:intergenic 45.0%
! GTCTAGGATTCCAAAAGTGC+AGG - chr2_2:23807898-23807917 Msa0244950:CDS 45.0%
! CGCAATAGTTCCTGCACTTT+TGG + chr2_2:23807911-23807930 None:intergenic 45.0%
GACGTTACCCCATTGTCATT+TGG - chr2_2:23808058-23808077 Msa0244950:CDS 45.0%
! TTGTAGTTTGTGAGGGTGAG+AGG - chr2_2:23808197-23808216 Msa0244950:CDS 45.0%
! TGTAGTTTGTGAGGGTGAGA+GGG - chr2_2:23808198-23808217 Msa0244950:CDS 45.0%
CAAAGCATACATCCAAGGGA+TGG + chr2_2:23808294-23808313 None:intergenic 45.0%
TCTGCAAAGGAAAGATCCAC+TGG - chr2_2:23808343-23808362 Msa0244950:CDS 45.0%
GAACATCTACTTCATTCCCC+TGG + chr2_2:23808623-23808642 None:intergenic 45.0%
! GAAAGGGCTTGAGAGTATGT+TGG - chr2_2:23808656-23808675 Msa0244950:CDS 45.0%
TATACTGTTGTGGCCGTTCA+AGG - chr2_2:23807127-23807146 Msa0244950:CDS 45.0%
GGAGATTGCAGAGGCTTATT+TGG - chr2_2:23807256-23807275 Msa0244950:CDS 45.0%
! AGAGGCTTATTTGGAATCGC+CGG - chr2_2:23807265-23807284 Msa0244950:intron 45.0%
TATGCAATAGCTGCAGCAGT+GGG + chr2_2:23807401-23807420 None:intergenic 45.0%
ATATGCAATAGCTGCAGCAG+TGG + chr2_2:23807402-23807421 None:intergenic 45.0%
ACTGCTGCAGCTATTGCATA+TGG - chr2_2:23807401-23807420 Msa0244950:CDS 45.0%
! ACTTCTGGAAACACTCACCT+CGG - chr2_2:23807542-23807561 Msa0244950:CDS 45.0%
AGAAGTTCTCAACCTCCTCA+AGG + chr2_2:23807657-23807676 None:intergenic 45.0%
! GTCTAGGATTCCAAAAGTGC+AGG - chr2_2:23807898-23807917 Msa0244950:CDS 45.0%
! CGCAATAGTTCCTGCACTTT+TGG + chr2_2:23807911-23807930 None:intergenic 45.0%
GACGTTACCCCATTGTCATT+TGG - chr2_2:23808058-23808077 Msa0244950:CDS 45.0%
! TTGTAGTTTGTGAGGGTGAG+AGG - chr2_2:23808197-23808216 Msa0244950:CDS 45.0%
! TGTAGTTTGTGAGGGTGAGA+GGG - chr2_2:23808198-23808217 Msa0244950:CDS 45.0%
CAAAGCATACATCCAAGGGA+TGG + chr2_2:23808294-23808313 None:intergenic 45.0%
TCTGCAAAGGAAAGATCCAC+TGG - chr2_2:23808343-23808362 Msa0244950:CDS 45.0%
GAACATCTACTTCATTCCCC+TGG + chr2_2:23808623-23808642 None:intergenic 45.0%
! GAAAGGGCTTGAGAGTATGT+TGG - chr2_2:23808656-23808675 Msa0244950:CDS 45.0%
TGGCCGTTCAAGGTTATTGC+TGG - chr2_2:23807137-23807156 Msa0244950:CDS 50.0%
TTCTCAGCGAAAAGCCACCA+TGG - chr2_2:23807328-23807347 Msa0244950:intron 50.0%
CACAACGTTAAGGCCAGCAA+TGG + chr2_2:23807363-23807382 None:intergenic 50.0%
GAGGTGAGTGTTTCCAGAAG+TGG + chr2_2:23807543-23807562 None:intergenic 50.0%
! CTTCTGGAAACACTCACCTC+GGG - chr2_2:23807543-23807562 Msa0244950:CDS 50.0%
! TTCTGGAAACACTCACCTCG+GGG - chr2_2:23807544-23807563 Msa0244950:CDS 50.0%
CTAGGAATCCAAGAGCCTTG+AGG - chr2_2:23807639-23807658 Msa0244950:CDS 50.0%
CATAAGCAACAGCCTCGTCA+GGG + chr2_2:23807973-23807992 None:intergenic 50.0%
! CTGACGAGGCTGTTGCTTAT+GGG - chr2_2:23807972-23807991 Msa0244950:CDS 50.0%
! TGACGAGGCTGTTGCTTATG+GGG - chr2_2:23807973-23807992 Msa0244950:CDS 50.0%
CAAGCTGCTGTGTTGAGTGA+AGG - chr2_2:23808004-23808023 Msa0244950:CDS 50.0%
GTGAGTGACAACAACGTGCT+TGG - chr2_2:23808226-23808245 Msa0244950:CDS 50.0%
ACGAGGAACACTTGGAAGAC+CGG + chr2_2:23808266-23808285 None:intergenic 50.0%
TGGCCGTTCAAGGTTATTGC+TGG - chr2_2:23807137-23807156 Msa0244950:CDS 50.0%
TTCTCAGCGAAAAGCCACCA+TGG - chr2_2:23807328-23807347 Msa0244950:intron 50.0%
CACAACGTTAAGGCCAGCAA+TGG + chr2_2:23807363-23807382 None:intergenic 50.0%
GAGGTGAGTGTTTCCAGAAG+TGG + chr2_2:23807543-23807562 None:intergenic 50.0%
! CTTCTGGAAACACTCACCTC+GGG - chr2_2:23807543-23807562 Msa0244950:CDS 50.0%
! TTCTGGAAACACTCACCTCG+GGG - chr2_2:23807544-23807563 Msa0244950:CDS 50.0%
CTAGGAATCCAAGAGCCTTG+AGG - chr2_2:23807639-23807658 Msa0244950:CDS 50.0%
CATAAGCAACAGCCTCGTCA+GGG + chr2_2:23807973-23807992 None:intergenic 50.0%
! CTGACGAGGCTGTTGCTTAT+GGG - chr2_2:23807972-23807991 Msa0244950:CDS 50.0%
! TGACGAGGCTGTTGCTTATG+GGG - chr2_2:23807973-23807992 Msa0244950:CDS 50.0%
CAAGCTGCTGTGTTGAGTGA+AGG - chr2_2:23808004-23808023 Msa0244950:CDS 50.0%
GTGAGTGACAACAACGTGCT+TGG - chr2_2:23808226-23808245 Msa0244950:CDS 50.0%
ACGAGGAACACTTGGAAGAC+CGG + chr2_2:23808266-23808285 None:intergenic 50.0%
GGAGAAGCTCCTTTGTGCAG+AGG - chr2_2:23807202-23807221 Msa0244950:CDS 55.0%
CGAAAAGCCACCATGGATGC+TGG - chr2_2:23807335-23807354 Msa0244950:intron 55.0%
AATGGCACCAGCATCCATGG+TGG + chr2_2:23807345-23807364 None:intergenic 55.0%
AGCAATGGCACCAGCATCCA+TGG + chr2_2:23807348-23807367 None:intergenic 55.0%
!! ATGGATGCTGGTGCCATTGC+TGG - chr2_2:23807347-23807366 Msa0244950:intron 55.0%
TCTGGAAACACTCACCTCGG+GGG - chr2_2:23807545-23807564 Msa0244950:CDS 55.0%
TATCAAAGTCCTCTCCCCCG+AGG + chr2_2:23807562-23807581 None:intergenic 55.0%
GGAATCCAAGAGCCTTGAGG+AGG - chr2_2:23807642-23807661 Msa0244950:CDS 55.0%
CTCAACCTCCTCAAGGCTCT+TGG + chr2_2:23807650-23807669 None:intergenic 55.0%
TTCTTGTCGGTGGCTCGTCT+AGG - chr2_2:23807882-23807901 Msa0244950:CDS 55.0%
!! CAAGAGCATCAACCCTGACG+AGG - chr2_2:23807958-23807977 Msa0244950:CDS 55.0%
CCATAAGCAACAGCCTCGTC+AGG + chr2_2:23807974-23807993 None:intergenic 55.0%
! CCTGACGAGGCTGTTGCTTA+TGG - chr2_2:23807971-23807990 Msa0244950:CDS 55.0%
ACGTCTCGCAGCACCAAGTT+TGG + chr2_2:23808043-23808062 None:intergenic 55.0%
CTTCCAAGTGTTCCTCGTCG+TGG - chr2_2:23808268-23808287 Msa0244950:CDS 55.0%
GGAGAAGCTCCTTTGTGCAG+AGG - chr2_2:23807202-23807221 Msa0244950:CDS 55.0%
CGAAAAGCCACCATGGATGC+TGG - chr2_2:23807335-23807354 Msa0244950:intron 55.0%
AATGGCACCAGCATCCATGG+TGG + chr2_2:23807345-23807364 None:intergenic 55.0%
AGCAATGGCACCAGCATCCA+TGG + chr2_2:23807348-23807367 None:intergenic 55.0%
!! ATGGATGCTGGTGCCATTGC+TGG - chr2_2:23807347-23807366 Msa0244950:intron 55.0%
TCTGGAAACACTCACCTCGG+GGG - chr2_2:23807545-23807564 Msa0244950:CDS 55.0%
TATCAAAGTCCTCTCCCCCG+AGG + chr2_2:23807562-23807581 None:intergenic 55.0%
GGAATCCAAGAGCCTTGAGG+AGG - chr2_2:23807642-23807661 Msa0244950:CDS 55.0%
CTCAACCTCCTCAAGGCTCT+TGG + chr2_2:23807650-23807669 None:intergenic 55.0%
TTCTTGTCGGTGGCTCGTCT+AGG - chr2_2:23807882-23807901 Msa0244950:CDS 55.0%
!! CAAGAGCATCAACCCTGACG+AGG - chr2_2:23807958-23807977 Msa0244950:CDS 55.0%
CCATAAGCAACAGCCTCGTC+AGG + chr2_2:23807974-23807993 None:intergenic 55.0%
! CCTGACGAGGCTGTTGCTTA+TGG - chr2_2:23807971-23807990 Msa0244950:CDS 55.0%
ACGTCTCGCAGCACCAAGTT+TGG + chr2_2:23808043-23808062 None:intergenic 55.0%
CTTCCAAGTGTTCCTCGTCG+TGG - chr2_2:23808268-23808287 Msa0244950:CDS 55.0%
AAACACTCACCTCGGGGGAG+AGG - chr2_2:23807550-23807569 Msa0244950:CDS 60.0%
TGGCCACGACGAGGAACACT+TGG + chr2_2:23808274-23808293 None:intergenic 60.0%
AAACACTCACCTCGGGGGAG+AGG - chr2_2:23807550-23807569 Msa0244950:CDS 60.0%
TGGCCACGACGAGGAACACT+TGG + chr2_2:23808274-23808293 None:intergenic 60.0%
TCCTCGTCGTGGCCATCCCT+TGG - chr2_2:23808279-23808298 Msa0244950:CDS 65.0%
TCCAAGGGATGGCCACGACG+AGG + chr2_2:23808283-23808302 None:intergenic 65.0%
TCCTCGTCGTGGCCATCCCT+TGG - chr2_2:23808279-23808298 Msa0244950:CDS 65.0%
TCCAAGGGATGGCCACGACG+AGG + chr2_2:23808283-23808302 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 23807020 23808704 23807020 ID=Msa0244950;Name=Msa0244950
chr2_2 mRNA 23807020 23808704 23807020 ID=Msa0244950-mRNA-1;Parent=Msa0244950;Name=Msa0244950-mRNA-1;_AED=0.40;_eAED=0.45;_QI=0|0|0|1|1|1|2|0|534
chr2_2 exon 23807357 23808704 23807357 ID=Msa0244950-mRNA-1:exon:9211;Parent=Msa0244950-mRNA-1
chr2_2 exon 23807020 23807276 23807020 ID=Msa0244950-mRNA-1:exon:9210;Parent=Msa0244950-mRNA-1
chr2_2 CDS 23807357 23808704 23807357 ID=Msa0244950-mRNA-1:cds;Parent=Msa0244950-mRNA-1
chr2_2 CDS 23807020 23807276 23807020 ID=Msa0244950-mRNA-1:cds;Parent=Msa0244950-mRNA-1
Gene Sequence

>Msa0244950

ATGTTAAAAAGACAGGTGAATGATGAGAATTTATTATTAATATTTTTTTCTTCAGATACTAAGAGGTTAATTGGTAGGAAATTTAGTGATTACGTTGTTCAAAAAGATATACTGTTGTGGCCGTTCAAGGTTATTGCTGGTGTTAATGACAAACCTACGATTAGTGTTAAGTACAAGGGTCAGGAGAAGCTCCTTTGTGCAGAGGAAATCTCATCTATTGTCCTCACAAACATGAAGGAGATTGCAGAGGCTTATTTGGAATCGCCGGTTAAAAATGCAGTTGTCACCGTTCCTGCTTATTTTAACGATTCTCAGCGAAAAGCCACCATGGATGCTGGTGCCATTGCTGGCCTTAACGTTGTGAAGATAATCAATGAACCCACTGCTGCAGCTATTGCATATGGCCTTGACAAAAGAAGTAATTGTGATGGTGAAAGAAATATTTTTGTCTTTGATCTTGGTGGTGGGACTTTTGATGTGTCTCTCCTCACAATTAAAGGTGATGTCTTTGAAGTTAAAGCCACTTCTGGAAACACTCACCTCGGGGGAGAGGACTTTGATAACAGAATGCTGAACTACTTTGTGCAAGAATTTAATAGGAAGAACAAAGTGGATATCACTAGGAATCCAAGAGCCTTGAGGAGGTTGAGAACTTCTTGTGAAAAGGCGAAAAGGACACTCTCTTTCAAATTGGTCACCACTATTGAGATTGATTATTTATATGAGGACATTGACTTCTCTACATCAATCACTCGTGTCAAGTTTGAAGAAATCAACATGGACCTTTTTAATGAGTGTATGAAGATTGTTGAAAGTTGTCTTGTGGATTCAAAGATCGACAAGAGCAGTGTACATGATATTGTTCTTGTCGGTGGCTCGTCTAGGATTCCAAAAGTGCAGGAACTATTGCGTAATTTCTTCAATGGGAAGGAGTTGTGCAAGAGCATCAACCCTGACGAGGCTGTTGCTTATGGGGCAGCTGTGCAAGCTGCTGTGTTGAGTGAAGGCATTAAGAATGTTCCAAACTTGGTGCTGCGAGACGTTACCCCATTGTCATTTGGTATCTCGGTACATAATGATCGTATTATGAGTGTGGTGATTCCTAGGAACACTTCTGTACCTTTCAAGAAGACCAGCCAATATCTTACTTCTAAAGATAACCAATATAGTGCCTTGATTGTAGTTTGTGAGGGTGAGAGGGCAAGAGTGAGTGACAACAACGTGCTTGGTTTTTTCAGTCTTTCCGGTCTTCCAAGTGTTCCTCGTCGTGGCCATCCCTTGGATGTATGCTTTGCTATCGATGAAAACGGCATCTTAACTGTTTCTGCAAAGGAAAGATCCACTGGAAAAGATGAGAAATTCTTAAGGAAGGCCAAGGTAATGAATGCATTAGATGACTGCATTTACAAGTTGAGGAATGCTCTAAAGAATAAGGATGTCAAATTAAAGCTTTCTTCTCAAAAGAATAAAAAGATCAATCGTGCAATTACTGTGGCTAAAGATTTGCTTCATAAGAATAACCAGGGGAATGAAGTAGATGTTCTTGAAGATCATCTGAAAGGGCTTGAGAGTATGTTGGAACACCTTGTAATCAATACTGGCTAG
Protein sequence

>Msa0244950

MLKRQVNDENLLLIFFSSDTKRLIGRKFSDYVVQKDILLWPFKVIAGVNDKPTISVKYKGQEKLLCAEEISSIVLTNMKEIAEAYLESPVKNAVVTVPAYFNDSQRKATMDAGAIAGLNVVKIINEPTAAAIAYGLDKRSNCDGERNIFVFDLGGGTFDVSLLTIKGDVFEVKATSGNTHLGGEDFDNRMLNYFVQEFNRKNKVDITRNPRALRRLRTSCEKAKRTLSFKLVTTIEIDYLYEDIDFSTSITRVKFEEINMDLFNECMKIVESCLVDSKIDKSSVHDIVLVGGSSRIPKVQELLRNFFNGKELCKSINPDEAVAYGAAVQAAVLSEGIKNVPNLVLRDVTPLSFGISVHNDRIMSVVIPRNTSVPFKKTSQYLTSKDNQYSALIVVCEGERARVSDNNVLGFFSLSGLPSVPRRGHPLDVCFAIDENGILTVSAKERSTGKDEKFLRKAKVMNALDDCIYKLRNALKNKDVKLKLSSQKNKKINRAITVAKDLLHKNNQGNEVDVLEDHLKGLESMLEHLVINTG*