Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245950 | XP_013463493.1 | 99.605 | 253 | 1 | 0 | 1 | 253 | 1 | 253 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245950 | sp|Q5XEM9|ALFL5_ARATH | 68.702 | 262 | 69 | 3 | 3 | 253 | 1 | 260 | 5.25e-118 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245950 | A0A072V846 | 99.605 | 253 | 1 | 0 | 1 | 253 | 1 | 253 | 0.0 | 521 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0245950 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0245950 | Msa0284530 | 0.884119 | 2.517850e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245950 | MtrunA17_Chr2g0300241 | 99.605 | 253 | 1 | 0 | 1 | 253 | 1 | 253 | 0.0 | 521 |
| Msa0245950 | MtrunA17_Chr8g0343441 | 74.016 | 254 | 56 | 5 | 8 | 253 | 5 | 256 | 5.83e-117 | 335 |
| Msa0245950 | MtrunA17_Chr1g0150821 | 73.282 | 262 | 52 | 3 | 7 | 253 | 5 | 263 | 3.79e-114 | 328 |
| Msa0245950 | MtrunA17_Chr2g0329821 | 72.177 | 248 | 58 | 5 | 13 | 252 | 6 | 250 | 1.09e-106 | 308 |
| Msa0245950 | MtrunA17_Chr4g0076771 | 68.548 | 248 | 68 | 6 | 12 | 252 | 10 | 254 | 1.55e-105 | 306 |
| Msa0245950 | MtrunA17_Chr4g0006381 | 59.231 | 260 | 81 | 6 | 1 | 253 | 1 | 242 | 2.35e-89 | 264 |
| Msa0245950 | MtrunA17_Chr7g0242511 | 57.647 | 255 | 93 | 6 | 1 | 253 | 1 | 242 | 2.54e-84 | 251 |
| Msa0245950 | MtrunA17_Chr8g0366371 | 90.000 | 80 | 8 | 0 | 133 | 212 | 2 | 81 | 1.30e-24 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245950 | AT5G20510.1 | 68.702 | 262 | 69 | 3 | 3 | 253 | 1 | 260 | 5.33e-119 | 340 |
| Msa0245950 | AT3G42790.1 | 68.775 | 253 | 72 | 4 | 3 | 252 | 1 | 249 | 2.97e-110 | 318 |
| Msa0245950 | AT2G02470.1 | 69.444 | 252 | 63 | 6 | 12 | 253 | 9 | 256 | 5.37e-107 | 310 |
| Msa0245950 | AT2G02470.2 | 69.758 | 248 | 60 | 6 | 12 | 253 | 9 | 247 | 6.11e-105 | 304 |
| Msa0245950 | AT1G14510.1 | 70.082 | 244 | 64 | 5 | 12 | 250 | 9 | 248 | 1.31e-101 | 296 |
| Msa0245950 | AT5G26210.1 | 71.542 | 253 | 63 | 2 | 7 | 252 | 4 | 254 | 3.23e-100 | 293 |
| Msa0245950 | AT5G20510.2 | 67.890 | 218 | 57 | 3 | 47 | 253 | 4 | 219 | 5.65e-92 | 270 |
| Msa0245950 | AT5G05610.2 | 62.140 | 243 | 82 | 6 | 11 | 252 | 7 | 240 | 2.34e-88 | 262 |
| Msa0245950 | AT5G05610.1 | 62.140 | 243 | 82 | 6 | 11 | 252 | 7 | 240 | 2.34e-88 | 262 |
| Msa0245950 | AT3G11200.1 | 61.508 | 252 | 88 | 5 | 3 | 252 | 1 | 245 | 4.41e-86 | 256 |
| Msa0245950 | AT5G20510.3 | 75.758 | 165 | 40 | 0 | 3 | 167 | 1 | 165 | 5.76e-84 | 249 |
| Msa0245950 | AT3G11200.2 | 61.111 | 216 | 75 | 5 | 39 | 252 | 24 | 232 | 6.79e-71 | 217 |
| Msa0245950 | AT2G02470.3 | 75.796 | 157 | 36 | 2 | 12 | 168 | 9 | 163 | 1.38e-69 | 215 |
Find 83 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGATATCCCGGTGAATTA+TGG | 0.229806 | 2_2:-26038494 | Msa0245950:CDS |
| CCGGACTCTCTTATTGTTGC+AGG | 0.298666 | 2_2:+26036676 | None:intergenic |
| TTCTACTTCGGCGCAAGATT+TGG | 0.307978 | 2_2:-26038327 | Msa0245950:CDS |
| AGGACTGAAACGCACGAAAA+TGG | 0.319601 | 2_2:+26036557 | None:intergenic |
| TTGATGCCCAATGCAGGTTC+TGG | 0.338942 | 2_2:+26038432 | None:intergenic |
| GTTTATGATCTGCCACATAT+TGG | 0.362483 | 2_2:-26036333 | Msa0245950:three_prime_UTR |
| TATCTGCATCAGATGAGTTC+TGG | 0.365648 | 2_2:-26036793 | Msa0245950:CDS |
| ATATAAATATCCCAATATAC+AGG | 0.402259 | 2_2:+26036459 | None:intergenic |
| TGGATATCCCGGTGAATTAT+GGG | 0.422923 | 2_2:-26038493 | Msa0245950:CDS |
| AAGGAGAATCTTTCTCTGTA+TGG | 0.424220 | 2_2:-26038513 | Msa0245950:CDS |
| GACTTCAAGGGCCGTAGAGC+TGG | 0.434123 | 2_2:-26040090 | Msa0245950:CDS |
| AGCTGTCTTCCGTGACTTCA+AGG | 0.434860 | 2_2:-26040103 | Msa0245950:CDS |
| TGATCTGCCAACAATATTTG+AGG | 0.435492 | 2_2:-26037271 | Msa0245950:CDS |
| CTCTCTGTGGCTTTCTACTT+CGG | 0.439785 | 2_2:-26038339 | Msa0245950:CDS |
| AAAAGGGTCATGGAACTTGC+TGG | 0.449501 | 2_2:-26040159 | Msa0245950:exon |
| CATGCAGCGTGGATCTGAAC+TGG | 0.451670 | 2_2:-26036912 | Msa0245950:intron |
| TCACTTCCCTATGGTATTCA+AGG | 0.455959 | 2_2:+26036653 | None:intergenic |
| AATGCAGGTTCTGGAAGTTC+AGG | 0.475540 | 2_2:+26038441 | None:intergenic |
| TTGATTAAAGCTCTCACCAC+TGG | 0.479655 | 2_2:-26040066 | Msa0245950:intron |
| CTGTTGTGACTTGAGACAGA+TGG | 0.481520 | 2_2:+26037210 | None:intergenic |
| TTGATGTGCTCAGCCCGGGC+AGG | 0.484353 | 2_2:+26036716 | None:intergenic |
| TGAACTTCCAGAACCTGCAT+TGG | 0.488308 | 2_2:-26038439 | Msa0245950:CDS |
| CTGCTTGATGTGCTCAGCCC+GGG | 0.490873 | 2_2:+26036712 | None:intergenic |
| ACAATATTTGAGGTTGTGAC+CGG | 0.491460 | 2_2:-26037261 | Msa0245950:CDS |
| TTGCTGTTCACAGTGATACA+TGG | 0.492333 | 2_2:-26038365 | Msa0245950:CDS |
| ACTGCTTGATGTGCTCAGCC+CGG | 0.493704 | 2_2:+26036711 | None:intergenic |
| TTAAATATTTGAGAGTTGAC+TGG | 0.495534 | 2_2:-26036507 | Msa0245950:three_prime_UTR |
| GAACTTCCAGAACCTGCATT+GGG | 0.499838 | 2_2:-26038438 | Msa0245950:CDS |
| TCAGGAGGAACTTCTTCAGC+AGG | 0.502111 | 2_2:+26038459 | None:intergenic |
| ATTTATATGTTCTTAGTACC+TGG | 0.504330 | 2_2:-26036444 | Msa0245950:three_prime_UTR |
| TGTTCGCAAGCATGCTGCAT+TGG | 0.504506 | 2_2:-26036365 | Msa0245950:three_prime_UTR |
| TATCCCAATATACAGGGAAA+AGG | 0.507518 | 2_2:+26036466 | None:intergenic |
| GTGTGAAGATCACTCCTGCC+CGG | 0.508233 | 2_2:-26036730 | Msa0245950:CDS |
| ATCTGCTAAGAAGCAGACTA+AGG | 0.509595 | 2_2:-26037238 | Msa0245950:CDS |
| AGTCTGCTTCTTAGCAGATC+CGG | 0.514682 | 2_2:+26037242 | None:intergenic |
| TTCCCTATGGTATTCAAGGC+CGG | 0.515731 | 2_2:+26036657 | None:intergenic |
| TATCCACAAAATAAGTTGAC+AGG | 0.515883 | 2_2:+26036537 | None:intergenic |
| AACAGCAACAAGTCAAAGTC+AGG | 0.516207 | 2_2:-26037192 | Msa0245950:CDS |
| GCAAAATTGATGCCCAATGC+AGG | 0.517201 | 2_2:+26038426 | None:intergenic |
| ATATGCGAGAAGTGGTATCA+TGG | 0.517493 | 2_2:-26036758 | Msa0245950:CDS |
| CTTTCTCTGTATGGATATCC+CGG | 0.520026 | 2_2:-26038504 | Msa0245950:CDS |
| CCTAACCAGGGTCACACTGC+TGG | 0.524327 | 2_2:+26039921 | None:intergenic |
| GACGACGAAGAGGAGGATCA+AGG | 0.529279 | 2_2:-26036845 | Msa0245950:CDS |
| CTCTACGGCCCTTGAAGTCA+CGG | 0.531441 | 2_2:+26040094 | None:intergenic |
| ATGGGATGCAAGAAAAGGAT+TGG | 0.537031 | 2_2:-26038398 | Msa0245950:CDS |
| GTCATGGAACTTGCTGGTGA+TGG | 0.537299 | 2_2:-26040153 | Msa0245950:CDS |
| GATCATTAATCAGAGTGAAA+AGG | 0.538004 | 2_2:+26037289 | None:intergenic |
| GTCACAACCTCAAATATTGT+TGG | 0.541746 | 2_2:+26037264 | None:intergenic |
| TATGATCTGCCACATATTGG+CGG | 0.542260 | 2_2:-26036330 | Msa0245950:three_prime_UTR |
| ACGACGAAGAGGAGGATCAA+GGG | 0.543159 | 2_2:-26036844 | Msa0245950:CDS |
| TCAACAGTACGAGGGTCAAA+CGG | 0.546490 | 2_2:+26040126 | None:intergenic |
| AGAAGTAACTCACTTCCCTA+TGG | 0.554443 | 2_2:+26036644 | None:intergenic |
| AAAAGAAGATGACGAGGGAG+TGG | 0.555346 | 2_2:-26036867 | Msa0245950:CDS |
| TAGGGATGGGATGCAAGAAA+AGG | 0.555698 | 2_2:-26038403 | Msa0245950:CDS |
| AGTGACTTCCCATAATTCAC+CGG | 0.557164 | 2_2:+26038485 | None:intergenic |
| TGTGAAGATCACTCCTGCCC+GGG | 0.562262 | 2_2:-26036729 | Msa0245950:CDS |
| GCTCTGATTCCGCCAATATG+TGG | 0.562551 | 2_2:+26036321 | None:intergenic |
| CCTGCAACAATAAGAGAGTC+CGG | 0.564359 | 2_2:-26036676 | Msa0245950:CDS |
| TCACTGCTGTAACTCCATGC+TGG | 0.568381 | 2_2:-26036619 | Msa0245950:three_prime_UTR |
| AGATGAAGATGAAAATGAGA+GGG | 0.569001 | 2_2:+26040302 | None:intergenic |
| GCTGTCTTCCGTGACTTCAA+GGG | 0.569487 | 2_2:-26040102 | Msa0245950:CDS |
| ACTCTCTTATTGTTGCAGGC+AGG | 0.572502 | 2_2:+26036680 | None:intergenic |
| AAGATGAAGATGAAAATGAG+AGG | 0.575792 | 2_2:+26040301 | None:intergenic |
| CTTTAATCAAGCCAGCTCTA+CGG | 0.578337 | 2_2:+26040079 | None:intergenic |
| TTGGCTTTGATAAAGCCGAC+AGG | 0.579784 | 2_2:-26038308 | Msa0245950:intron |
| AGTCCGGCCTTGAATACCAT+AGG | 0.585372 | 2_2:-26036660 | Msa0245950:exon |
| CCAATATACAGGGAAAAGGT+AGG | 0.585786 | 2_2:+26036470 | None:intergenic |
| GCCAGCAAAAGAAGATGACG+AGG | 0.593624 | 2_2:-26036873 | Msa0245950:CDS |
| CAAGGGGAATGCGCTGCATG+CGG | 0.601102 | 2_2:-26036827 | Msa0245950:CDS |
| AACTAGTTAGCTGTCCAGCA+TGG | 0.601903 | 2_2:+26036605 | None:intergenic |
| TGATACATGGCTTCTCTCTG+TGG | 0.605581 | 2_2:-26038352 | Msa0245950:CDS |
| CGACGAAGAGGAGGATCAAG+GGG | 0.610579 | 2_2:-26036843 | Msa0245950:CDS |
| GCAGGTTCTGGAAGTTCAGG+AGG | 0.623597 | 2_2:+26038444 | None:intergenic |
| CGAGGGAGTGGACGACGAAG+AGG | 0.626370 | 2_2:-26036855 | Msa0245950:CDS |
| GTCCGGCCTTGAATACCATA+GGG | 0.629003 | 2_2:-26036659 | Msa0245950:exon |
| GGGAGTGGACGACGAAGAGG+AGG | 0.630295 | 2_2:-26036852 | Msa0245950:CDS |
| TATAAATATCCCAATATACA+GGG | 0.636714 | 2_2:+26036460 | None:intergenic |
| GTGACTTCCCATAATTCACC+GGG | 0.639519 | 2_2:+26038486 | None:intergenic |
| GTCAAAGTCAGGCTCAAAAG+CGG | 0.660535 | 2_2:-26037181 | Msa0245950:intron |
| AAGACAGCTTCAACAGTACG+AGG | 0.662619 | 2_2:+26040117 | None:intergenic |
| GCTGTGACATATGCGAGAAG+TGG | 0.668882 | 2_2:-26036766 | Msa0245950:CDS |
| AGACAGCTTCAACAGTACGA+GGG | 0.736429 | 2_2:+26040118 | None:intergenic |
| CCAGCAAAAGAAGATGACGA+GGG | 0.742179 | 2_2:-26036872 | Msa0245950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTAAAAAATGAAC+TGG | - | chr2_2:26037164-26037183 | Msa0245950:intron | 10.0% |
| !! | AATAAAAATGAAAATATACA+AGG | + | chr2_2:26039509-26039528 | None:intergenic | 10.0% |
| !!! | ATTGTATATGTTTTCAAAAA+TGG | - | chr2_2:26037537-26037556 | Msa0245950:intron | 15.0% |
| !!! | TTTATGAAATAATAGGATTT+TGG | + | chr2_2:26037592-26037611 | None:intergenic | 15.0% |
| !!! | GTTAATTCAATTTTTTTTTC+TGG | + | chr2_2:26037895-26037914 | None:intergenic | 15.0% |
| !!! | ATTTTAAAAAATGAACTGGT+TGG | - | chr2_2:26037168-26037187 | Msa0245950:intron | 20.0% |
| !! | TAGAATATAGCAAAAATTGT+AGG | + | chr2_2:26037357-26037376 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTTTCTGGATT+CGG | + | chr2_2:26037889-26037908 | None:intergenic | 20.0% |
| !! | AACATTCCATAACATAATAA+AGG | + | chr2_2:26038379-26038398 | None:intergenic | 20.0% |
| !! | TTATTATGTTATGGAATGTT+TGG | - | chr2_2:26038379-26038398 | Msa0245950:CDS | 20.0% |
| !! | ACAAGAAATATAACGATTAA+CGG | + | chr2_2:26038415-26038434 | None:intergenic | 20.0% |
| !! | AGTATATGTTTGTATATATG+TGG | + | chr2_2:26038519-26038538 | None:intergenic | 20.0% |
| !! | TATAAATATCCCAATATACA+GGG | + | chr2_2:26040181-26040200 | None:intergenic | 20.0% |
| !! | ATATAAATATCCCAATATAC+AGG | + | chr2_2:26040182-26040201 | None:intergenic | 20.0% |
| ! | TTTCTCTCTCTTCAAAAAAT+GGG | + | chr2_2:26036461-26036480 | None:intergenic | 25.0% |
| !! | TTTTCTCTCTCTTCAAAAAA+TGG | + | chr2_2:26036462-26036481 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAGAGAGAGAAAA+AGG | - | chr2_2:26036462-26036481 | Msa0245950:three_prime_UTR | 25.0% |
| !!! | TTTTTGAAGAGAGAGAAAAA+GGG | - | chr2_2:26036463-26036482 | Msa0245950:three_prime_UTR | 25.0% |
| !!! | TAAGATTGTTTTGTGTTTGT+CGG | - | chr2_2:26036756-26036775 | Msa0245950:CDS | 25.0% |
| ! | CTTATATACTGTATTGTTTG+TGG | - | chr2_2:26036832-26036851 | Msa0245950:CDS | 25.0% |
| !!! | AGTCATGTAATTTTTAACTG+TGG | + | chr2_2:26037128-26037147 | None:intergenic | 25.0% |
| ! | CATAGGGTTTATGAAATAAT+AGG | + | chr2_2:26037599-26037618 | None:intergenic | 25.0% |
| ! | TCCAAAATCAAATACACATA+GGG | + | chr2_2:26037615-26037634 | None:intergenic | 25.0% |
| ! | ATCCAAAATCAAATACACAT+AGG | + | chr2_2:26037616-26037635 | None:intergenic | 25.0% |
| ! | TGGATTGACATTGTTTAAAA+AGG | - | chr2_2:26037631-26037650 | Msa0245950:intron | 25.0% |
| ! | TCATAGAATCATACATATCA+TGG | + | chr2_2:26037694-26037713 | None:intergenic | 25.0% |
| !! | TGGATATTTCTACTAGATTT+GGG | + | chr2_2:26037795-26037814 | None:intergenic | 25.0% |
| !! | ATGGATATTTCTACTAGATT+TGG | + | chr2_2:26037796-26037815 | None:intergenic | 25.0% |
| !!! | AATTTTTTTTTCTGGATTCG+GGG | + | chr2_2:26037887-26037906 | None:intergenic | 25.0% |
| !!! | CAATTTTTTTTTCTGGATTC+GGG | + | chr2_2:26037888-26037907 | None:intergenic | 25.0% |
| ! | AAAAGAATTATCATACCTGT+CGG | + | chr2_2:26038348-26038367 | None:intergenic | 25.0% |
| ! | ATAACATAATAAAGGATTGG+AGG | + | chr2_2:26038371-26038390 | None:intergenic | 25.0% |
| ! | TCCAATCCTTTATTATGTTA+TGG | - | chr2_2:26038370-26038389 | Msa0245950:CDS | 25.0% |
| ! | TCCATAACATAATAAAGGAT+TGG | + | chr2_2:26038374-26038393 | None:intergenic | 25.0% |
| !! | TTCTTTTGACAATTTAAGCA+AGG | + | chr2_2:26038697-26038716 | None:intergenic | 25.0% |
| ! | AATTGTCAAAAGAAATAGTG+TGG | - | chr2_2:26038703-26038722 | Msa0245950:intron | 25.0% |
| ! | CAAAACTAAATGCAAACTAT+AGG | + | chr2_2:26038859-26038878 | None:intergenic | 25.0% |
| ! | TGTGTTATGCAATATCAAAA+TGG | - | chr2_2:26038877-26038896 | Msa0245950:intron | 25.0% |
| ! | TTTCTCTCTTTATGCAAAAT+AGG | - | chr2_2:26039039-26039058 | Msa0245950:intron | 25.0% |
| ! | TACATTGTAATTCTTCATGT+AGG | - | chr2_2:26039321-26039340 | Msa0245950:intron | 25.0% |
| !! | TATTTTGCTTGAATAGATGT+AGG | - | chr2_2:26039625-26039644 | Msa0245950:intron | 25.0% |
| ! | TGTCTTATAATAATGCTGAA+TGG | - | chr2_2:26039651-26039670 | Msa0245950:intron | 25.0% |
| ! | TTAAATATTTGAGAGTTGAC+TGG | - | chr2_2:26040131-26040150 | Msa0245950:CDS | 25.0% |
| ! | ATTTATATGTTCTTAGTACC+TGG | - | chr2_2:26040194-26040213 | Msa0245950:five_prime_UTR | 25.0% |
| AGATGAAGATGAAAATGAGA+GGG | + | chr2_2:26036339-26036358 | None:intergenic | 30.0% | |
| AAGATGAAGATGAAAATGAG+AGG | + | chr2_2:26036340-26036359 | None:intergenic | 30.0% | |
| AGAACGAAGTGAAAGAAAAA+TGG | + | chr2_2:26036430-26036449 | None:intergenic | 30.0% | |
| TACTGTATTGTTTGTGGATT+TGG | - | chr2_2:26036838-26036857 | Msa0245950:CDS | 30.0% | |
| ACTGTATTGTTTGTGGATTT+GGG | - | chr2_2:26036839-26036858 | Msa0245950:CDS | 30.0% | |
| ATGAACGTTGTGATTTGAAT+TGG | - | chr2_2:26036991-26037010 | Msa0245950:intron | 30.0% | |
| TGAACGTTGTGATTTGAATT+GGG | - | chr2_2:26036992-26037011 | Msa0245950:intron | 30.0% | |
| !! | GTTTTGACAATGTTGTCATT+TGG | - | chr2_2:26037230-26037249 | Msa0245950:CDS | 30.0% |
| ACTTATATAGATCAACAACG+AGG | + | chr2_2:26037270-26037289 | None:intergenic | 30.0% | |
| ATTGTTCTGATGAACTTATC+TGG | - | chr2_2:26037394-26037413 | Msa0245950:intron | 30.0% | |
| TTGTTCTGATGAACTTATCT+GGG | - | chr2_2:26037395-26037414 | Msa0245950:intron | 30.0% | |
| !! | ACCCTATGTGTATTTGATTT+TGG | - | chr2_2:26037611-26037630 | Msa0245950:intron | 30.0% |
| AATATCCATGTAGATTTCGT+AGG | - | chr2_2:26037807-26037826 | Msa0245950:intron | 30.0% | |
| ! | AAACTAGAAAACCTTTTACC+TGG | - | chr2_2:26037945-26037964 | Msa0245950:intron | 30.0% |
| TTGATATAACACCAGGTAAA+AGG | + | chr2_2:26037959-26037978 | None:intergenic | 30.0% | |
| CATATGTTTGATATAACACC+AGG | + | chr2_2:26037966-26037985 | None:intergenic | 30.0% | |
| AACATGTTCTACATCAGAAA+AGG | - | chr2_2:26038106-26038125 | Msa0245950:intron | 30.0% | |
| ! | AAACACGGCAAAAATGTTTT+GGG | + | chr2_2:26038440-26038459 | None:intergenic | 30.0% |
| ! | AAAACACGGCAAAAATGTTT+TGG | + | chr2_2:26038441-26038460 | None:intergenic | 30.0% |
| CTGAACTTATGTTTCTTATG+CGG | - | chr2_2:26038615-26038634 | Msa0245950:intron | 30.0% | |
| ! | TTCTCCTTATTTATGATGCA+TGG | - | chr2_2:26038780-26038799 | Msa0245950:intron | 30.0% |
| ! | TCTCCTTATTTATGATGCAT+GGG | - | chr2_2:26038781-26038800 | Msa0245950:intron | 30.0% |
| ATTACAATGTATCACAGATC+AGG | + | chr2_2:26039312-26039331 | None:intergenic | 30.0% | |
| GATCATTAATCAGAGTGAAA+AGG | + | chr2_2:26039352-26039371 | None:intergenic | 30.0% | |
| AAATATACAAGGAAGAGAGA+AGG | + | chr2_2:26039498-26039517 | None:intergenic | 30.0% | |
| ! | TATCCACAAAATAAGTTGAC+AGG | + | chr2_2:26040104-26040123 | None:intergenic | 30.0% |
| !! | GCACAAACAATTATTTTACC+AGG | + | chr2_2:26040215-26040234 | None:intergenic | 30.0% |
| AAGAGTAAAAACCCTAACCA+GGG | + | chr2_2:26036732-26036751 | None:intergenic | 35.0% | |
| TCATTACACACACAGCAAAA+GGG | + | chr2_2:26037041-26037060 | None:intergenic | 35.0% | |
| ATCATTACACACACAGCAAA+AGG | + | chr2_2:26037042-26037061 | None:intergenic | 35.0% | |
| ATAGAACCAGTGAGTTCAAT+CGG | - | chr2_2:26037097-26037116 | Msa0245950:intron | 35.0% | |
| AGGGTTTCACAATTCACATA+GGG | + | chr2_2:26037504-26037523 | None:intergenic | 35.0% | |
| TAGGGTTTCACAATTCACAT+AGG | + | chr2_2:26037505-26037524 | None:intergenic | 35.0% | |
| ACAATCCTACGAAATCTACA+TGG | + | chr2_2:26037815-26037834 | None:intergenic | 35.0% | |
| !! | TGTTACTGGATTTGGTGTAT+CGG | + | chr2_2:26037858-26037877 | None:intergenic | 35.0% |
| AGCACTTGAGAATAGATGAA+GGG | + | chr2_2:26037917-26037936 | None:intergenic | 35.0% | |
| TAGCACTTGAGAATAGATGA+AGG | + | chr2_2:26037918-26037937 | None:intergenic | 35.0% | |
| AAGGAGAATCTTTCTCTGTA+TGG | - | chr2_2:26038125-26038144 | Msa0245950:intron | 35.0% | |
| ! | ATTGGGCATCAATTTTGCTA+GGG | - | chr2_2:26038217-26038236 | Msa0245950:intron | 35.0% |
| TGTAGCTTCAGGAAAAAACA+CGG | + | chr2_2:26038455-26038474 | None:intergenic | 35.0% | |
| !! | TAAGTGCTGAACACATGTTT+AGG | + | chr2_2:26038492-26038511 | None:intergenic | 35.0% |
| GTTCTGATTGAGATCATATG+TGG | - | chr2_2:26038569-26038588 | Msa0245950:intron | 35.0% | |
| ! | CTTATGCGGCAATATTGATT+TGG | - | chr2_2:26038629-26038648 | Msa0245950:intron | 35.0% |
| TGACAATTTAAGCAAGGAAG+TGG | + | chr2_2:26038691-26038710 | None:intergenic | 35.0% | |
| TCAAAAGAAATAGTGTGGAG+AGG | - | chr2_2:26038708-26038727 | Msa0245950:intron | 35.0% | |
| CTTCCCATGCATCATAAATA+AGG | + | chr2_2:26038787-26038806 | None:intergenic | 35.0% | |
| ! | ATGATGCATGGGAAGATTTT+CGG | - | chr2_2:26038792-26038811 | Msa0245950:intron | 35.0% |
| ! | GACACTTAGCATTGTTTTCA+TGG | - | chr2_2:26039068-26039087 | Msa0245950:intron | 35.0% |
| ATGCTTAGCATTGTTTGCAT+GGG | - | chr2_2:26039144-26039163 | Msa0245950:intron | 35.0% | |
| TGATCTGCCAACAATATTTG+AGG | - | chr2_2:26039367-26039386 | Msa0245950:intron | 35.0% | |
| GTCACAACCTCAAATATTGT+TGG | + | chr2_2:26039377-26039396 | None:intergenic | 35.0% | |
| ! | ACAATATTTGAGGTTGTGAC+CGG | - | chr2_2:26039377-26039396 | Msa0245950:intron | 35.0% |
| GTGAGCAACACATATTTGTA+AGG | + | chr2_2:26039695-26039714 | None:intergenic | 35.0% | |
| !!! | AGTCCTGTCAACTTATTTTG+TGG | - | chr2_2:26040098-26040117 | Msa0245950:CDS | 35.0% |
| ! | CTACCTTTTCCCTGTATATT+GGG | - | chr2_2:26040169-26040188 | Msa0245950:exon | 35.0% |
| TATCCCAATATACAGGGAAA+AGG | + | chr2_2:26040175-26040194 | None:intergenic | 35.0% | |
| GTTTATGATCTGCCACATAT+TGG | - | chr2_2:26040305-26040324 | Msa0245950:five_prime_UTR | 35.0% | |
| AAGAGAGAGAAAAAGGGTCA+TGG | - | chr2_2:26036469-26036488 | Msa0245950:three_prime_UTR | 40.0% | |
| CTTTAATCAAGCCAGCTCTA+CGG | + | chr2_2:26036562-26036581 | None:intergenic | 40.0% | |
| TTGATTAAAGCTCTCACCAC+TGG | - | chr2_2:26036572-26036591 | Msa0245950:three_prime_UTR | 40.0% | |
| CAAGAGTAAAAACCCTAACC+AGG | + | chr2_2:26036733-26036752 | None:intergenic | 40.0% | |
| CAATGTTGTTAGATCCAGAC+CGG | - | chr2_2:26037072-26037091 | Msa0245950:intron | 40.0% | |
| GTTAAACCGATTGAACTCAC+TGG | + | chr2_2:26037106-26037125 | None:intergenic | 40.0% | |
| !! | ATGAACTGGTTGGTTTGATC+TGG | - | chr2_2:26037178-26037197 | Msa0245950:intron | 40.0% |
| TTGTCAAAACCAGATCGAAC+TGG | + | chr2_2:26037220-26037239 | None:intergenic | 40.0% | |
| ! | TGCTGCATATGTGTCTGTTT+TGG | - | chr2_2:26037435-26037454 | Msa0245950:intron | 40.0% |
| ! | GCTGCATATGTGTCTGTTTT+GGG | - | chr2_2:26037436-26037455 | Msa0245950:intron | 40.0% |
| TACAATCCGAGCTGTTCTTA+GGG | + | chr2_2:26037523-26037542 | None:intergenic | 40.0% | |
| ATACAATCCGAGCTGTTCTT+AGG | + | chr2_2:26037524-26037543 | None:intergenic | 40.0% | |
| ! | TAGATTTGGGATCATTGCAG+TGG | + | chr2_2:26037782-26037801 | None:intergenic | 40.0% |
| !!! | TTTTTTCTGGATTCGGGGTT+GGG | + | chr2_2:26037882-26037901 | None:intergenic | 40.0% |
| !!! | TTTTTTTCTGGATTCGGGGT+TGG | + | chr2_2:26037883-26037902 | None:intergenic | 40.0% |
| CTTTCTCTGTATGGATATCC+CGG | - | chr2_2:26038134-26038153 | Msa0245950:intron | 40.0% | |
| ATGGATATCCCGGTGAATTA+TGG | - | chr2_2:26038144-26038163 | Msa0245950:intron | 40.0% | |
| TGGATATCCCGGTGAATTAT+GGG | - | chr2_2:26038145-26038164 | Msa0245950:intron | 40.0% | |
| AGTGACTTCCCATAATTCAC+CGG | + | chr2_2:26038156-26038175 | None:intergenic | 40.0% | |
| ! | CATTGGGCATCAATTTTGCT+AGG | - | chr2_2:26038216-26038235 | Msa0245950:intron | 40.0% |
| ! | GCATCAATTTTGCTAGGGAT+GGG | - | chr2_2:26038222-26038241 | Msa0245950:intron | 40.0% |
| ATGGGATGCAAGAAAAGGAT+TGG | - | chr2_2:26038240-26038259 | Msa0245950:intron | 40.0% | |
| ! | TTGCTGTTCACAGTGATACA+TGG | - | chr2_2:26038273-26038292 | Msa0245950:intron | 40.0% |
| TATAACGATTAACGGAGACG+CGG | + | chr2_2:26038407-26038426 | None:intergenic | 40.0% | |
| ATGCTACAACTTGTAGCTTC+AGG | + | chr2_2:26038466-26038485 | None:intergenic | 40.0% | |
| TGCAAACTATAGGCAGTAGA+TGG | + | chr2_2:26038849-26038868 | None:intergenic | 40.0% | |
| ATCAAACATAGAGATGCGCA+TGG | + | chr2_2:26039126-26039145 | None:intergenic | 40.0% | |
| GATGCTTAGCATTGTTTGCA+TGG | - | chr2_2:26039143-26039162 | Msa0245950:intron | 40.0% | |
| ATTTGTGTGTGCAAGTGCAT+TGG | - | chr2_2:26039194-26039213 | Msa0245950:intron | 40.0% | |
| ATCTGCTAAGAAGCAGACTA+AGG | - | chr2_2:26039400-26039419 | Msa0245950:intron | 40.0% | |
| AACAGCAACAAGTCAAAGTC+AGG | - | chr2_2:26039446-26039465 | Msa0245950:intron | 40.0% | |
| ATAATGCTGAATGGAGTCGT+CGG | - | chr2_2:26039660-26039679 | Msa0245950:intron | 40.0% | |
| TATCTGCATCAGATGAGTTC+TGG | - | chr2_2:26039845-26039864 | Msa0245950:intron | 40.0% | |
| ATATGCGAGAAGTGGTATCA+TGG | - | chr2_2:26039880-26039899 | Msa0245950:intron | 40.0% | |
| TCACTTCCCTATGGTATTCA+AGG | + | chr2_2:26039988-26040007 | None:intergenic | 40.0% | |
| AGAAGTAACTCACTTCCCTA+TGG | + | chr2_2:26039997-26040016 | None:intergenic | 40.0% | |
| CCAATATACAGGGAAAAGGT+AGG | + | chr2_2:26040171-26040190 | None:intergenic | 40.0% | |
| ! | CCTACCTTTTCCCTGTATAT+TGG | - | chr2_2:26040168-26040187 | Msa0245950:exon | 40.0% |
| ! | CATGCTGCATTGGATTTTTC+AGG | - | chr2_2:26040283-26040302 | Msa0245950:five_prime_UTR | 40.0% |
| TATGATCTGCCACATATTGG+CGG | - | chr2_2:26040308-26040327 | Msa0245950:five_prime_UTR | 40.0% | |
| GAGAGAGAGAGAGAGAGATT+TGG | + | chr2_2:26036398-26036417 | None:intergenic | 45.0% | |
| AAAAGGGTCATGGAACTTGC+TGG | - | chr2_2:26036479-26036498 | Msa0245950:three_prime_UTR | 45.0% | |
| TCAACAGTACGAGGGTCAAA+CGG | + | chr2_2:26036515-26036534 | None:intergenic | 45.0% | |
| AGACAGCTTCAACAGTACGA+GGG | + | chr2_2:26036523-26036542 | None:intergenic | 45.0% | |
| AAGACAGCTTCAACAGTACG+AGG | + | chr2_2:26036524-26036543 | None:intergenic | 45.0% | |
| !! | GAACTCACTGGTTCTATCTC+CGG | + | chr2_2:26037094-26037113 | None:intergenic | 45.0% |
| GTGAAACCCTAAGAACAGCT+CGG | - | chr2_2:26037514-26037533 | Msa0245950:intron | 45.0% | |
| ! | GGTTGGGTTGTTACTGGATT+TGG | + | chr2_2:26037866-26037885 | None:intergenic | 45.0% |
| GTGACTTCCCATAATTCACC+GGG | + | chr2_2:26038155-26038174 | None:intergenic | 45.0% | |
| !! | AATGCAGGTTCTGGAAGTTC+AGG | + | chr2_2:26038200-26038219 | None:intergenic | 45.0% |
| TGAACTTCCAGAACCTGCAT+TGG | - | chr2_2:26038199-26038218 | Msa0245950:intron | 45.0% | |
| GAACTTCCAGAACCTGCATT+GGG | - | chr2_2:26038200-26038219 | Msa0245950:intron | 45.0% | |
| GCAAAATTGATGCCCAATGC+AGG | + | chr2_2:26038215-26038234 | None:intergenic | 45.0% | |
| ! | GGCATCAATTTTGCTAGGGA+TGG | - | chr2_2:26038221-26038240 | Msa0245950:intron | 45.0% |
| TAGGGATGGGATGCAAGAAA+AGG | - | chr2_2:26038235-26038254 | Msa0245950:intron | 45.0% | |
| TGATACATGGCTTCTCTCTG+TGG | - | chr2_2:26038286-26038305 | Msa0245950:intron | 45.0% | |
| CTCTCTGTGGCTTTCTACTT+CGG | - | chr2_2:26038299-26038318 | Msa0245950:intron | 45.0% | |
| TTCTACTTCGGCGCAAGATT+TGG | - | chr2_2:26038311-26038330 | Msa0245950:CDS | 45.0% | |
| !! | TTGGCTTTGATAAAGCCGAC+AGG | - | chr2_2:26038330-26038349 | Msa0245950:CDS | 45.0% |
| TCACATCACTCATGCTCATC+AGG | - | chr2_2:26038971-26038990 | Msa0245950:intron | 45.0% | |
| CACATCACTCATGCTCATCA+GGG | - | chr2_2:26038972-26038991 | Msa0245950:intron | 45.0% | |
| AGTCTGCTTCTTAGCAGATC+CGG | + | chr2_2:26039399-26039418 | None:intergenic | 45.0% | |
| CTGTTGTGACTTGAGACAGA+TGG | + | chr2_2:26039431-26039450 | None:intergenic | 45.0% | |
| GTCAAAGTCAGGCTCAAAAG+CGG | - | chr2_2:26039457-26039476 | Msa0245950:intron | 45.0% | |
| ! | TCGTCATCTTCTTTTGCTGG+CGG | + | chr2_2:26039766-26039785 | None:intergenic | 45.0% |
| CCAGCAAAAGAAGATGACGA+GGG | - | chr2_2:26039766-26039785 | Msa0245950:intron | 45.0% | |
| AAAAGAAGATGACGAGGGAG+TGG | - | chr2_2:26039771-26039790 | Msa0245950:intron | 45.0% | |
| ACTCTCTTATTGTTGCAGGC+AGG | + | chr2_2:26039961-26039980 | None:intergenic | 45.0% | |
| CCTGCAACAATAAGAGAGTC+CGG | - | chr2_2:26039962-26039981 | Msa0245950:intron | 45.0% | |
| TTCCCTATGGTATTCAAGGC+CGG | + | chr2_2:26039984-26040003 | None:intergenic | 45.0% | |
| AACTAGTTAGCTGTCCAGCA+TGG | + | chr2_2:26040036-26040055 | None:intergenic | 45.0% | |
| AGGACTGAAACGCACGAAAA+TGG | + | chr2_2:26040084-26040103 | None:intergenic | 45.0% | |
| !! | GTCATGGAACTTGCTGGTGA+TGG | - | chr2_2:26036485-26036504 | Msa0245950:three_prime_UTR | 50.0% |
| AGCTGTCTTCCGTGACTTCA+AGG | - | chr2_2:26036535-26036554 | Msa0245950:three_prime_UTR | 50.0% | |
| GCTGTCTTCCGTGACTTCAA+GGG | - | chr2_2:26036536-26036555 | Msa0245950:three_prime_UTR | 50.0% | |
| GAGAGAGAGAGAGAAACCAG+TGG | + | chr2_2:26036591-26036610 | None:intergenic | 50.0% | |
| ! | TTTTACCAGCAGTGTGACCC+TGG | - | chr2_2:26036712-26036731 | Msa0245950:CDS | 50.0% |
| TTGAACCAGCCAGTTCGATC+TGG | - | chr2_2:26037208-26037227 | Msa0245950:CDS | 50.0% | |
| CAAAACCAGATCGAACTGGC+TGG | + | chr2_2:26037216-26037235 | None:intergenic | 50.0% | |
| ! | ATTCGGGGTTGGGTTGTTAC+TGG | + | chr2_2:26037872-26037891 | None:intergenic | 50.0% |
| TCAGGAGGAACTTCTTCAGC+AGG | + | chr2_2:26038182-26038201 | None:intergenic | 50.0% | |
| TTGATGCCCAATGCAGGTTC+TGG | + | chr2_2:26038209-26038228 | None:intergenic | 50.0% | |
| ATCACTCATGCTCATCAGGG+AGG | - | chr2_2:26038975-26038994 | Msa0245950:intron | 50.0% | |
| GATTGTTTCCTCATGCAGCG+TGG | - | chr2_2:26039715-26039734 | Msa0245950:intron | 50.0% | |
| GCCAGCAAAAGAAGATGACG+AGG | - | chr2_2:26039765-26039784 | Msa0245950:intron | 50.0% | |
| ! | CCCTCGTCATCTTCTTTTGC+TGG | + | chr2_2:26039769-26039788 | None:intergenic | 50.0% |
| ACGACGAAGAGGAGGATCAA+GGG | - | chr2_2:26039794-26039813 | Msa0245950:intron | 50.0% | |
| GCTGTGACATATGCGAGAAG+TGG | - | chr2_2:26039872-26039891 | Msa0245950:intron | 50.0% | |
| CCGGACTCTCTTATTGTTGC+AGG | + | chr2_2:26039965-26039984 | None:intergenic | 50.0% | |
| AGTCCGGCCTTGAATACCAT+AGG | - | chr2_2:26039978-26039997 | Msa0245950:intron | 50.0% | |
| GTCCGGCCTTGAATACCATA+GGG | - | chr2_2:26039979-26039998 | Msa0245950:intron | 50.0% | |
| TCACTGCTGTAACTCCATGC+TGG | - | chr2_2:26040019-26040038 | Msa0245950:intron | 50.0% | |
| TGTTCGCAAGCATGCTGCAT+TGG | - | chr2_2:26040273-26040292 | Msa0245950:five_prime_UTR | 50.0% | |
| GCTCTGATTCCGCCAATATG+TGG | + | chr2_2:26040320-26040339 | None:intergenic | 50.0% | |
| CTCTACGGCCCTTGAAGTCA+CGG | + | chr2_2:26036547-26036566 | None:intergenic | 55.0% | |
| CAGCAGTGTGACCCTGGTTA+GGG | - | chr2_2:26036718-26036737 | Msa0245950:CDS | 55.0% | |
| !! | CACTGGTTCTATCTCCGGTC+TGG | + | chr2_2:26037089-26037108 | None:intergenic | 55.0% |
| !! | GCAGGTTCTGGAAGTTCAGG+AGG | + | chr2_2:26038197-26038216 | None:intergenic | 55.0% |
| GTTCAGATCCACGCTGCATG+AGG | + | chr2_2:26039726-26039745 | None:intergenic | 55.0% | |
| CATGCAGCGTGGATCTGAAC+TGG | - | chr2_2:26039726-26039745 | Msa0245950:intron | 55.0% | |
| GACGACGAAGAGGAGGATCA+AGG | - | chr2_2:26039793-26039812 | Msa0245950:intron | 55.0% | |
| CGACGAAGAGGAGGATCAAG+GGG | - | chr2_2:26039795-26039814 | Msa0245950:intron | 55.0% | |
| GTGTGAAGATCACTCCTGCC+CGG | - | chr2_2:26039908-26039927 | Msa0245950:intron | 55.0% | |
| TGTGAAGATCACTCCTGCCC+GGG | - | chr2_2:26039909-26039928 | Msa0245950:intron | 55.0% | |
| ACTGCTTGATGTGCTCAGCC+CGG | + | chr2_2:26039930-26039949 | None:intergenic | 55.0% | |
| GACTTCAAGGGCCGTAGAGC+TGG | - | chr2_2:26036548-26036567 | Msa0245950:three_prime_UTR | 60.0% | |
| CCTAACCAGGGTCACACTGC+TGG | + | chr2_2:26036720-26036739 | None:intergenic | 60.0% | |
| CCAGCAGTGTGACCCTGGTT+AGG | - | chr2_2:26036717-26036736 | Msa0245950:CDS | 60.0% | |
| CAAGGGGAATGCGCTGCATG+CGG | - | chr2_2:26039811-26039830 | Msa0245950:intron | 60.0% | |
| CTGCTTGATGTGCTCAGCCC+GGG | + | chr2_2:26039929-26039948 | None:intergenic | 60.0% | |
| CGAGGGAGTGGACGACGAAG+AGG | - | chr2_2:26039783-26039802 | Msa0245950:intron | 65.0% | |
| GGGAGTGGACGACGAAGAGG+AGG | - | chr2_2:26039786-26039805 | Msa0245950:intron | 65.0% | |
| TTGATGTGCTCAGCCCGGGC+AGG | + | chr2_2:26039925-26039944 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 26036312 | 26040348 | 26036312 | ID=Msa0245950;Name=Msa0245950 |
| chr2_2 | mRNA | 26036312 | 26040348 | 26036312 | ID=Msa0245950-mRNA-1;Parent=Msa0245950;Name=Msa0245950-mRNA-1;_AED=0.09;_eAED=0.09;_QI=176|1|1|1|1|1|5|358|253 |
| chr2_2 | exon | 26036312 | 26036927 | 26036312 | ID=Msa0245950-mRNA-1:exon:9738;Parent=Msa0245950-mRNA-1 |
| chr2_2 | exon | 26037182 | 26037317 | 26037182 | ID=Msa0245950-mRNA-1:exon:9737;Parent=Msa0245950-mRNA-1 |
| chr2_2 | exon | 26038309 | 26038537 | 26038309 | ID=Msa0245950-mRNA-1:exon:9736;Parent=Msa0245950-mRNA-1 |
| chr2_2 | exon | 26039927 | 26039959 | 26039927 | ID=Msa0245950-mRNA-1:exon:9735;Parent=Msa0245950-mRNA-1 |
| chr2_2 | exon | 26040067 | 26040348 | 26040067 | ID=Msa0245950-mRNA-1:exon:9734;Parent=Msa0245950-mRNA-1 |
| chr2_2 | five_prime_UTR | 26040173 | 26040348 | 26040173 | ID=Msa0245950-mRNA-1:five_prime_utr;Parent=Msa0245950-mRNA-1 |
| chr2_2 | CDS | 26040067 | 26040172 | 26040067 | ID=Msa0245950-mRNA-1:cds;Parent=Msa0245950-mRNA-1 |
| chr2_2 | CDS | 26039927 | 26039959 | 26039927 | ID=Msa0245950-mRNA-1:cds;Parent=Msa0245950-mRNA-1 |
| chr2_2 | CDS | 26038309 | 26038537 | 26038309 | ID=Msa0245950-mRNA-1:cds;Parent=Msa0245950-mRNA-1 |
| chr2_2 | CDS | 26037182 | 26037317 | 26037182 | ID=Msa0245950-mRNA-1:cds;Parent=Msa0245950-mRNA-1 |
| chr2_2 | CDS | 26036670 | 26036927 | 26036670 | ID=Msa0245950-mRNA-1:cds;Parent=Msa0245950-mRNA-1 |
| chr2_2 | three_prime_UTR | 26036312 | 26036669 | 26036312 | ID=Msa0245950-mRNA-1:three_prime_utr;Parent=Msa0245950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
