Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284530 | XP_013463493.1 | 99.605 | 253 | 1 | 0 | 1 | 253 | 1 | 253 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284530 | sp|Q5XEM9|ALFL5_ARATH | 68.702 | 262 | 69 | 3 | 3 | 253 | 1 | 260 | 5.25e-118 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284530 | A0A072V846 | 99.605 | 253 | 1 | 0 | 1 | 253 | 1 | 253 | 0.0 | 521 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0284530 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0245950 | Msa0284530 | 0.884119 | 2.517850e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284530 | MtrunA17_Chr2g0300241 | 99.605 | 253 | 1 | 0 | 1 | 253 | 1 | 253 | 0.0 | 521 |
| Msa0284530 | MtrunA17_Chr8g0343441 | 74.016 | 254 | 56 | 5 | 8 | 253 | 5 | 256 | 5.83e-117 | 335 |
| Msa0284530 | MtrunA17_Chr1g0150821 | 73.282 | 262 | 52 | 3 | 7 | 253 | 5 | 263 | 3.79e-114 | 328 |
| Msa0284530 | MtrunA17_Chr2g0329821 | 72.177 | 248 | 58 | 5 | 13 | 252 | 6 | 250 | 1.09e-106 | 308 |
| Msa0284530 | MtrunA17_Chr4g0076771 | 68.548 | 248 | 68 | 6 | 12 | 252 | 10 | 254 | 1.55e-105 | 306 |
| Msa0284530 | MtrunA17_Chr4g0006381 | 59.231 | 260 | 81 | 6 | 1 | 253 | 1 | 242 | 2.35e-89 | 264 |
| Msa0284530 | MtrunA17_Chr7g0242511 | 57.647 | 255 | 93 | 6 | 1 | 253 | 1 | 242 | 2.54e-84 | 251 |
| Msa0284530 | MtrunA17_Chr8g0366371 | 90.000 | 80 | 8 | 0 | 133 | 212 | 2 | 81 | 1.30e-24 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284530 | AT5G20510.1 | 68.702 | 262 | 69 | 3 | 3 | 253 | 1 | 260 | 5.33e-119 | 340 |
| Msa0284530 | AT3G42790.1 | 68.775 | 253 | 72 | 4 | 3 | 252 | 1 | 249 | 2.97e-110 | 318 |
| Msa0284530 | AT2G02470.1 | 69.444 | 252 | 63 | 6 | 12 | 253 | 9 | 256 | 5.37e-107 | 310 |
| Msa0284530 | AT2G02470.2 | 69.758 | 248 | 60 | 6 | 12 | 253 | 9 | 247 | 6.11e-105 | 304 |
| Msa0284530 | AT1G14510.1 | 70.082 | 244 | 64 | 5 | 12 | 250 | 9 | 248 | 1.31e-101 | 296 |
| Msa0284530 | AT5G26210.1 | 71.542 | 253 | 63 | 2 | 7 | 252 | 4 | 254 | 3.23e-100 | 293 |
| Msa0284530 | AT5G20510.2 | 67.890 | 218 | 57 | 3 | 47 | 253 | 4 | 219 | 5.65e-92 | 270 |
| Msa0284530 | AT5G05610.2 | 62.140 | 243 | 82 | 6 | 11 | 252 | 7 | 240 | 2.34e-88 | 262 |
| Msa0284530 | AT5G05610.1 | 62.140 | 243 | 82 | 6 | 11 | 252 | 7 | 240 | 2.34e-88 | 262 |
| Msa0284530 | AT3G11200.1 | 61.508 | 252 | 88 | 5 | 3 | 252 | 1 | 245 | 4.41e-86 | 256 |
| Msa0284530 | AT5G20510.3 | 75.758 | 165 | 40 | 0 | 3 | 167 | 1 | 165 | 5.76e-84 | 249 |
| Msa0284530 | AT3G11200.2 | 61.111 | 216 | 75 | 5 | 39 | 252 | 24 | 232 | 6.79e-71 | 217 |
| Msa0284530 | AT2G02470.3 | 75.796 | 157 | 36 | 2 | 12 | 168 | 9 | 163 | 1.38e-69 | 215 |
Find 84 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGATATCCCGGTGAATTA+TGG | 0.229806 | 2_3:-22614249 | Msa0284530:CDS |
| CCGGACTCTCTTATTGTTGC+AGG | 0.298666 | 2_3:+22612428 | None:intergenic |
| TTCTACTTCGGCGCAAGATT+TGG | 0.307978 | 2_3:-22614082 | Msa0284530:CDS |
| AGGACTGAAACGCACGAAAA+TGG | 0.319601 | 2_3:+22612309 | None:intergenic |
| TTGATGCCCAATGCAGGTTC+TGG | 0.338942 | 2_3:+22614187 | None:intergenic |
| GTTTATGATCTGCCACATAT+TGG | 0.362483 | 2_3:-22612085 | Msa0284530:three_prime_UTR |
| TATCTGCATCAGATGAGTTC+TGG | 0.365648 | 2_3:-22612545 | Msa0284530:CDS |
| ATATAAATATCCCAATATAC+AGG | 0.402259 | 2_3:+22612211 | None:intergenic |
| TGGATATCCCGGTGAATTAT+GGG | 0.422923 | 2_3:-22614248 | Msa0284530:CDS |
| AAGGAGAATCTTTCTCTGTA+TGG | 0.424220 | 2_3:-22614268 | Msa0284530:CDS |
| GACTTCAAGGGCCGTAGAGC+TGG | 0.434123 | 2_3:-22615860 | Msa0284530:CDS |
| AGCTGTCTTCCGTGACTTCA+AGG | 0.434860 | 2_3:-22615873 | Msa0284530:CDS |
| TGATCTGCCAACAATATTTG+AGG | 0.435492 | 2_3:-22613023 | Msa0284530:CDS |
| CTCTCTGTGGCTTTCTACTT+CGG | 0.439785 | 2_3:-22614094 | Msa0284530:CDS |
| AAAAGGGTCATGGAACTTGC+TGG | 0.449501 | 2_3:-22615929 | Msa0284530:exon |
| CATGCAGCGTGGATCTGAAC+TGG | 0.451670 | 2_3:-22612664 | Msa0284530:intron |
| AGTCCTGTCAACTTATTATG+TGG | 0.452454 | 2_3:-22612292 | Msa0284530:three_prime_UTR |
| TCACTTCCCTATGGTATTCA+AGG | 0.455959 | 2_3:+22612405 | None:intergenic |
| AATGCAGGTTCTGGAAGTTC+AGG | 0.475540 | 2_3:+22614196 | None:intergenic |
| TTGATTAAAGCTCTCACCAC+TGG | 0.479655 | 2_3:-22615836 | Msa0284530:intron |
| CTGTTGTGACTTGAGACAGA+TGG | 0.481520 | 2_3:+22612962 | None:intergenic |
| TTGATGTGCTCAGCCCGGGC+AGG | 0.484353 | 2_3:+22612468 | None:intergenic |
| TGAACTTCCAGAACCTGCAT+TGG | 0.488308 | 2_3:-22614194 | Msa0284530:CDS |
| CTGCTTGATGTGCTCAGCCC+GGG | 0.490873 | 2_3:+22612464 | None:intergenic |
| ACAATATTTGAGGTTGTGAC+CGG | 0.491460 | 2_3:-22613013 | Msa0284530:CDS |
| TTGCTGTTCACAGTGATACA+TGG | 0.492333 | 2_3:-22614120 | Msa0284530:CDS |
| ACTGCTTGATGTGCTCAGCC+CGG | 0.493704 | 2_3:+22612463 | None:intergenic |
| TTAAATATTTGAGAGTTGAC+TGG | 0.495534 | 2_3:-22612259 | Msa0284530:three_prime_UTR |
| GAACTTCCAGAACCTGCATT+GGG | 0.499838 | 2_3:-22614193 | Msa0284530:CDS |
| TCAGGAGGAACTTCTTCAGC+AGG | 0.502111 | 2_3:+22614214 | None:intergenic |
| ATTTATATGTTCTTAGTACC+TGG | 0.504330 | 2_3:-22612196 | Msa0284530:three_prime_UTR |
| TGTTCGCAAGCATGCTGCAT+TGG | 0.504506 | 2_3:-22612117 | Msa0284530:three_prime_UTR |
| TATCCCAATATACAGGGAAA+AGG | 0.507518 | 2_3:+22612218 | None:intergenic |
| GTGTGAAGATCACTCCTGCC+CGG | 0.508233 | 2_3:-22612482 | Msa0284530:CDS |
| ATCTGCTAAGAAGCAGACTA+AGG | 0.509595 | 2_3:-22612990 | Msa0284530:CDS |
| AGTCTGCTTCTTAGCAGATC+CGG | 0.514682 | 2_3:+22612994 | None:intergenic |
| TTCCCTATGGTATTCAAGGC+CGG | 0.515731 | 2_3:+22612409 | None:intergenic |
| AACAGCAACAAGTCAAAGTC+AGG | 0.516207 | 2_3:-22612944 | Msa0284530:CDS |
| GCAAAATTGATGCCCAATGC+AGG | 0.517201 | 2_3:+22614181 | None:intergenic |
| ATATGCGAGAAGTGGTATCA+TGG | 0.517493 | 2_3:-22612510 | Msa0284530:CDS |
| CTTTCTCTGTATGGATATCC+CGG | 0.520026 | 2_3:-22614259 | Msa0284530:CDS |
| TATCCACATAATAAGTTGAC+AGG | 0.522272 | 2_3:+22612289 | None:intergenic |
| GACGACGAAGAGGAGGATCA+AGG | 0.529279 | 2_3:-22612597 | Msa0284530:CDS |
| CTCTACGGCCCTTGAAGTCA+CGG | 0.531441 | 2_3:+22615864 | None:intergenic |
| ATGGGATGCAAGAAAAGGAT+TGG | 0.537031 | 2_3:-22614153 | Msa0284530:CDS |
| GTCATGGAACTTGCTGGTGA+TGG | 0.537299 | 2_3:-22615923 | Msa0284530:CDS |
| GATCATTAATCAGAGTGAAA+AGG | 0.538004 | 2_3:+22613041 | None:intergenic |
| GTCACAACCTCAAATATTGT+TGG | 0.541746 | 2_3:+22613016 | None:intergenic |
| TATGATCTGCCACATATTGG+CGG | 0.542260 | 2_3:-22612082 | Msa0284530:three_prime_UTR |
| ACGACGAAGAGGAGGATCAA+GGG | 0.543159 | 2_3:-22612596 | Msa0284530:CDS |
| TCAACAGTACGAGGGTCAAA+CGG | 0.546490 | 2_3:+22615896 | None:intergenic |
| AGAAGTAACTCACTTCCCTA+TGG | 0.554443 | 2_3:+22612396 | None:intergenic |
| AAAAGAAGATGACGAGGGAG+TGG | 0.555346 | 2_3:-22612619 | Msa0284530:CDS |
| TAGGGATGGGATGCAAGAAA+AGG | 0.555698 | 2_3:-22614158 | Msa0284530:CDS |
| AGTGACTTCCCATAATTCAC+CGG | 0.557164 | 2_3:+22614240 | None:intergenic |
| TGTGAAGATCACTCCTGCCC+GGG | 0.562262 | 2_3:-22612481 | Msa0284530:CDS |
| GCTCTGATTCCGCCAATATG+TGG | 0.562551 | 2_3:+22612073 | None:intergenic |
| CCTGCAACAATAAGAGAGTC+CGG | 0.564359 | 2_3:-22612428 | Msa0284530:CDS |
| TCACTGCTGTAACTCCATGC+TGG | 0.568381 | 2_3:-22612371 | Msa0284530:three_prime_UTR |
| AGATGAAGATGAAAATGAGA+GGG | 0.569001 | 2_3:+22616057 | None:intergenic |
| GCTGTCTTCCGTGACTTCAA+GGG | 0.569487 | 2_3:-22615872 | Msa0284530:CDS |
| ACTCTCTTATTGTTGCAGGC+AGG | 0.572502 | 2_3:+22612432 | None:intergenic |
| AAGATGAAGATGAAAATGAG+AGG | 0.575792 | 2_3:+22616056 | None:intergenic |
| CTTTAATCAAGCCAGCTCTA+CGG | 0.578337 | 2_3:+22615849 | None:intergenic |
| TTGGCTTTGATAAAGCCGAC+AGG | 0.579784 | 2_3:-22614063 | Msa0284530:intron |
| AGTCCGGCCTTGAATACCAT+AGG | 0.585372 | 2_3:-22612412 | Msa0284530:exon |
| CCAATATACAGGGAAAAGGT+AGG | 0.585786 | 2_3:+22612222 | None:intergenic |
| GCCAGCAAAAGAAGATGACG+AGG | 0.593624 | 2_3:-22612625 | Msa0284530:CDS |
| CAAGGGGAATGCGCTGCATG+CGG | 0.601102 | 2_3:-22612579 | Msa0284530:CDS |
| AACTAGTTAGCTGTCCAGCA+TGG | 0.601903 | 2_3:+22612357 | None:intergenic |
| TGATACATGGCTTCTCTCTG+TGG | 0.605581 | 2_3:-22614107 | Msa0284530:CDS |
| CGACGAAGAGGAGGATCAAG+GGG | 0.610579 | 2_3:-22612595 | Msa0284530:CDS |
| CCTAACCAGGGTCACACTGT+TGG | 0.616688 | 2_3:+22615680 | None:intergenic |
| GCAGGTTCTGGAAGTTCAGG+AGG | 0.623597 | 2_3:+22614199 | None:intergenic |
| CGAGGGAGTGGACGACGAAG+AGG | 0.626370 | 2_3:-22612607 | Msa0284530:CDS |
| GTCCGGCCTTGAATACCATA+GGG | 0.629003 | 2_3:-22612411 | Msa0284530:exon |
| GGGAGTGGACGACGAAGAGG+AGG | 0.630295 | 2_3:-22612604 | Msa0284530:CDS |
| TATAAATATCCCAATATACA+GGG | 0.636714 | 2_3:+22612212 | None:intergenic |
| GTGACTTCCCATAATTCACC+GGG | 0.639519 | 2_3:+22614241 | None:intergenic |
| GTCAAAGTCAGGCTCAAAAG+CGG | 0.660535 | 2_3:-22612933 | Msa0284530:intron |
| AAGACAGCTTCAACAGTACG+AGG | 0.662619 | 2_3:+22615887 | None:intergenic |
| GCTGTGACATATGCGAGAAG+TGG | 0.668882 | 2_3:-22612518 | Msa0284530:CDS |
| AGACAGCTTCAACAGTACGA+GGG | 0.736429 | 2_3:+22615888 | None:intergenic |
| CCAGCAAAAGAAGATGACGA+GGG | 0.742179 | 2_3:-22612624 | Msa0284530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTAAAAAATGAAC+TGG | - | chr2_3:22612916-22612935 | Msa0284530:intron | 10.0% |
| !! | AATAAAAATGAAAATATACA+AGG | + | chr2_3:22615264-22615283 | None:intergenic | 10.0% |
| !!! | ATTGTATATGTTTTCAAAAA+TGG | - | chr2_3:22613289-22613308 | Msa0284530:intron | 15.0% |
| !!! | TTTATGAAATAATAGGATTT+TGG | + | chr2_3:22613344-22613363 | None:intergenic | 15.0% |
| !!! | GTTAATTCAATTTTTTTTTC+TGG | + | chr2_3:22613647-22613666 | None:intergenic | 15.0% |
| !! | ATATGTTTGTATATATAATG+TGG | + | chr2_3:22614271-22614290 | None:intergenic | 15.0% |
| !!! | ATTTTAAAAAATGAACTGGT+TGG | - | chr2_3:22612920-22612939 | Msa0284530:intron | 20.0% |
| !! | TAGAATATAGCAAAAATTGT+AGG | + | chr2_3:22613109-22613128 | None:intergenic | 20.0% |
| !!! | TGGATATTTCTATTAGATTT+GGG | + | chr2_3:22613547-22613566 | None:intergenic | 20.0% |
| !!! | ATGGATATTTCTATTAGATT+TGG | + | chr2_3:22613548-22613567 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTTTCTGGATT+CGG | + | chr2_3:22613641-22613660 | None:intergenic | 20.0% |
| !! | AACATTCCATAACATAATAA+AGG | + | chr2_3:22614131-22614150 | None:intergenic | 20.0% |
| !! | TTATTATGTTATGGAATGTT+TGG | - | chr2_3:22614131-22614150 | Msa0284530:CDS | 20.0% |
| !! | ACAAGAAATATAACGATTAA+CGG | + | chr2_3:22614167-22614186 | None:intergenic | 20.0% |
| !! | TATAAATATCCCAATATACA+GGG | + | chr2_3:22615936-22615955 | None:intergenic | 20.0% |
| !! | ATATAAATATCCCAATATAC+AGG | + | chr2_3:22615937-22615956 | None:intergenic | 20.0% |
| ! | TTTCTCTCTCTTCAAAAAAT+GGG | + | chr2_3:22612198-22612217 | None:intergenic | 25.0% |
| !! | TTTTCTCTCTCTTCAAAAAA+TGG | + | chr2_3:22612199-22612218 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAGAGAGAGAAAA+AGG | - | chr2_3:22612199-22612218 | Msa0284530:three_prime_UTR | 25.0% |
| !!! | TTTTTGAAGAGAGAGAAAAA+GGG | - | chr2_3:22612200-22612219 | Msa0284530:three_prime_UTR | 25.0% |
| !!! | TAAGATTGTTTTGTGTTTGT+CGG | - | chr2_3:22612504-22612523 | Msa0284530:CDS | 25.0% |
| ! | CTTATATACTGTATTGTTTG+TGG | - | chr2_3:22612580-22612599 | Msa0284530:CDS | 25.0% |
| !!! | AGTCATGTAATTTTTAACTG+TGG | + | chr2_3:22612880-22612899 | None:intergenic | 25.0% |
| ! | CATAGGGTTTATGAAATAAT+AGG | + | chr2_3:22613351-22613370 | None:intergenic | 25.0% |
| ! | TCCAAAATCAAATACACATA+GGG | + | chr2_3:22613367-22613386 | None:intergenic | 25.0% |
| ! | ATCCAAAATCAAATACACAT+AGG | + | chr2_3:22613368-22613387 | None:intergenic | 25.0% |
| ! | TGGATTGACATTGTTTAAAA+AGG | - | chr2_3:22613383-22613402 | Msa0284530:intron | 25.0% |
| ! | TCATAGAATCATACATATCA+TGG | + | chr2_3:22613446-22613465 | None:intergenic | 25.0% |
| !!! | AATTTTTTTTTCTGGATTCG+GGG | + | chr2_3:22613639-22613658 | None:intergenic | 25.0% |
| !!! | CAATTTTTTTTTCTGGATTC+GGG | + | chr2_3:22613640-22613659 | None:intergenic | 25.0% |
| ! | AAAAGAATTATCATACCTGT+CGG | + | chr2_3:22614100-22614119 | None:intergenic | 25.0% |
| ! | ATAACATAATAAAGGATTGG+AGG | + | chr2_3:22614123-22614142 | None:intergenic | 25.0% |
| ! | TCCAATCCTTTATTATGTTA+TGG | - | chr2_3:22614122-22614141 | Msa0284530:CDS | 25.0% |
| ! | TCCATAACATAATAAAGGAT+TGG | + | chr2_3:22614126-22614145 | None:intergenic | 25.0% |
| !! | TTCTTTTGACAATTTAAGCA+AGG | + | chr2_3:22614452-22614471 | None:intergenic | 25.0% |
| ! | AATTGTCAAAAGAAATAGTG+TGG | - | chr2_3:22614458-22614477 | Msa0284530:intron | 25.0% |
| ! | CAAAACTAAATGCAAACTAT+AGG | + | chr2_3:22614614-22614633 | None:intergenic | 25.0% |
| ! | TGTGTTATGCAATATCAAAA+TGG | - | chr2_3:22614632-22614651 | Msa0284530:intron | 25.0% |
| ! | TTTCTCTCTTTATGCAAAAT+AGG | - | chr2_3:22614794-22614813 | Msa0284530:intron | 25.0% |
| ! | TACATTGTAATTCTTCATGT+AGG | - | chr2_3:22615076-22615095 | Msa0284530:intron | 25.0% |
| !! | TATTTTGCTTGAATAGATGT+AGG | - | chr2_3:22615380-22615399 | Msa0284530:intron | 25.0% |
| ! | TGTCTTATAATAATGCTGAA+TGG | - | chr2_3:22615406-22615425 | Msa0284530:intron | 25.0% |
| ! | TTAAATATTTGAGAGTTGAC+TGG | - | chr2_3:22615886-22615905 | Msa0284530:CDS | 25.0% |
| ! | ATTTATATGTTCTTAGTACC+TGG | - | chr2_3:22615949-22615968 | Msa0284530:five_prime_UTR | 25.0% |
| AGATGAAGATGAAAATGAGA+GGG | + | chr2_3:22612091-22612110 | None:intergenic | 30.0% | |
| AAGATGAAGATGAAAATGAG+AGG | + | chr2_3:22612092-22612111 | None:intergenic | 30.0% | |
| AGAACGAAGTGAAAGAAAAA+TGG | + | chr2_3:22612167-22612186 | None:intergenic | 30.0% | |
| TACTGTATTGTTTGTGGATT+TGG | - | chr2_3:22612586-22612605 | Msa0284530:CDS | 30.0% | |
| ACTGTATTGTTTGTGGATTT+GGG | - | chr2_3:22612587-22612606 | Msa0284530:CDS | 30.0% | |
| ATGAACGTTGTGATTTGAAT+TGG | - | chr2_3:22612743-22612762 | Msa0284530:intron | 30.0% | |
| TGAACGTTGTGATTTGAATT+GGG | - | chr2_3:22612744-22612763 | Msa0284530:intron | 30.0% | |
| !! | GTTTTGACAATGTTGTCATT+TGG | - | chr2_3:22612982-22613001 | Msa0284530:CDS | 30.0% |
| ATTGTTCTGATGAACTTATC+TGG | - | chr2_3:22613146-22613165 | Msa0284530:intron | 30.0% | |
| TTGTTCTGATGAACTTATCT+GGG | - | chr2_3:22613147-22613166 | Msa0284530:intron | 30.0% | |
| !! | ACCCTATGTGTATTTGATTT+TGG | - | chr2_3:22613363-22613382 | Msa0284530:intron | 30.0% |
| AATATCCATGTAGATTTCGT+AGG | - | chr2_3:22613559-22613578 | Msa0284530:intron | 30.0% | |
| ! | AAACTAGAAAACCTTTTACC+TGG | - | chr2_3:22613697-22613716 | Msa0284530:intron | 30.0% |
| TTGATATAACACCAGGTAAA+AGG | + | chr2_3:22613711-22613730 | None:intergenic | 30.0% | |
| CATATGTTTGATATAACACC+AGG | + | chr2_3:22613718-22613737 | None:intergenic | 30.0% | |
| AACATGTTCTACATCAGAAA+AGG | - | chr2_3:22613858-22613877 | Msa0284530:intron | 30.0% | |
| ! | AAACACGGCAAAAATGTTTT+GGG | + | chr2_3:22614192-22614211 | None:intergenic | 30.0% |
| ! | AAAACACGGCAAAAATGTTT+TGG | + | chr2_3:22614193-22614212 | None:intergenic | 30.0% |
| CTGAACTTATGTTTCTTATG+CGG | - | chr2_3:22614370-22614389 | Msa0284530:intron | 30.0% | |
| ! | TTCTCCTTATTTATGATGCA+TGG | - | chr2_3:22614535-22614554 | Msa0284530:intron | 30.0% |
| ! | TCTCCTTATTTATGATGCAT+GGG | - | chr2_3:22614536-22614555 | Msa0284530:intron | 30.0% |
| ATTACAATGTATCACAGATC+AGG | + | chr2_3:22615067-22615086 | None:intergenic | 30.0% | |
| GATCATTAATCAGAGTGAAA+AGG | + | chr2_3:22615107-22615126 | None:intergenic | 30.0% | |
| AAATATACAAGGAAGAGAGA+AGG | + | chr2_3:22615253-22615272 | None:intergenic | 30.0% | |
| ! | TATCCACATAATAAGTTGAC+AGG | + | chr2_3:22615859-22615878 | None:intergenic | 30.0% |
| !! | GCACAAACAATTATTTTACC+AGG | + | chr2_3:22615970-22615989 | None:intergenic | 30.0% |
| AAGAGTAAAAACCCTAACCA+GGG | + | chr2_3:22612480-22612499 | None:intergenic | 35.0% | |
| TCATTACACACACAGCAAAA+GGG | + | chr2_3:22612793-22612812 | None:intergenic | 35.0% | |
| ATCATTACACACACAGCAAA+AGG | + | chr2_3:22612794-22612813 | None:intergenic | 35.0% | |
| ATAGAACCAGTGAGTTCAAT+CGG | - | chr2_3:22612849-22612868 | Msa0284530:intron | 35.0% | |
| ACTTACATAGATCAACAACG+AGG | + | chr2_3:22613022-22613041 | None:intergenic | 35.0% | |
| AGGGTTTCACAATTCACATA+GGG | + | chr2_3:22613256-22613275 | None:intergenic | 35.0% | |
| TAGGGTTTCACAATTCACAT+AGG | + | chr2_3:22613257-22613276 | None:intergenic | 35.0% | |
| ACAATCCTACGAAATCTACA+TGG | + | chr2_3:22613567-22613586 | None:intergenic | 35.0% | |
| !! | TGTTACTGGATTTGGTGTAT+CGG | + | chr2_3:22613610-22613629 | None:intergenic | 35.0% |
| AGCACTTGAGAATAGATGAA+GGG | + | chr2_3:22613669-22613688 | None:intergenic | 35.0% | |
| TAGCACTTGAGAATAGATGA+AGG | + | chr2_3:22613670-22613689 | None:intergenic | 35.0% | |
| AAGGAGAATCTTTCTCTGTA+TGG | - | chr2_3:22613877-22613896 | Msa0284530:intron | 35.0% | |
| ! | ATTGGGCATCAATTTTGCTA+GGG | - | chr2_3:22613969-22613988 | Msa0284530:intron | 35.0% |
| TGTAGCTTCAGGAAAAAACA+CGG | + | chr2_3:22614207-22614226 | None:intergenic | 35.0% | |
| !! | TAAGTGCTGAACACATGTTT+AGG | + | chr2_3:22614244-22614263 | None:intergenic | 35.0% |
| GTTCTGATTGAGATCATATG+TGG | - | chr2_3:22614324-22614343 | Msa0284530:intron | 35.0% | |
| ! | CTTATGCGGCAATATTGATT+TGG | - | chr2_3:22614384-22614403 | Msa0284530:intron | 35.0% |
| TGACAATTTAAGCAAGGAAG+TGG | + | chr2_3:22614446-22614465 | None:intergenic | 35.0% | |
| TCAAAAGAAATAGTGTGGAG+AGG | - | chr2_3:22614463-22614482 | Msa0284530:intron | 35.0% | |
| CTTCCCATGCATCATAAATA+AGG | + | chr2_3:22614542-22614561 | None:intergenic | 35.0% | |
| ! | ATGATGCATGGGAAGATTTT+CGG | - | chr2_3:22614547-22614566 | Msa0284530:intron | 35.0% |
| ! | GACACTTAGCATTGTTTTCA+TGG | - | chr2_3:22614823-22614842 | Msa0284530:intron | 35.0% |
| ATGCTTAGCATTGTTTGCAT+GGG | - | chr2_3:22614899-22614918 | Msa0284530:intron | 35.0% | |
| TGATCTGCCAACAATATTTG+AGG | - | chr2_3:22615122-22615141 | Msa0284530:intron | 35.0% | |
| GTCACAACCTCAAATATTGT+TGG | + | chr2_3:22615132-22615151 | None:intergenic | 35.0% | |
| ! | ACAATATTTGAGGTTGTGAC+CGG | - | chr2_3:22615132-22615151 | Msa0284530:intron | 35.0% |
| GTGAGCAACACATATTTGTA+AGG | + | chr2_3:22615450-22615469 | None:intergenic | 35.0% | |
| AGTCCTGTCAACTTATTATG+TGG | - | chr2_3:22615853-22615872 | Msa0284530:CDS | 35.0% | |
| ! | CTACCTTTTCCCTGTATATT+GGG | - | chr2_3:22615924-22615943 | Msa0284530:exon | 35.0% |
| TATCCCAATATACAGGGAAA+AGG | + | chr2_3:22615930-22615949 | None:intergenic | 35.0% | |
| GTTTATGATCTGCCACATAT+TGG | - | chr2_3:22616060-22616079 | Msa0284530:five_prime_UTR | 35.0% | |
| AAGAGAGAGAAAAAGGGTCA+TGG | - | chr2_3:22612206-22612225 | Msa0284530:three_prime_UTR | 40.0% | |
| CTTTAATCAAGCCAGCTCTA+CGG | + | chr2_3:22612299-22612318 | None:intergenic | 40.0% | |
| TTGATTAAAGCTCTCACCAC+TGG | - | chr2_3:22612309-22612328 | Msa0284530:three_prime_UTR | 40.0% | |
| CAAGAGTAAAAACCCTAACC+AGG | + | chr2_3:22612481-22612500 | None:intergenic | 40.0% | |
| CAATGTTGTTAGATCCAGAC+CGG | - | chr2_3:22612824-22612843 | Msa0284530:intron | 40.0% | |
| GTTAAACCGATTGAACTCAC+TGG | + | chr2_3:22612858-22612877 | None:intergenic | 40.0% | |
| !! | ATGAACTGGTTGGTTTGATC+TGG | - | chr2_3:22612930-22612949 | Msa0284530:intron | 40.0% |
| TTGTCAAAACCAGATCGAAC+TGG | + | chr2_3:22612972-22612991 | None:intergenic | 40.0% | |
| ! | TGCTGCATATGTGTCTGTTT+TGG | - | chr2_3:22613187-22613206 | Msa0284530:intron | 40.0% |
| ! | GCTGCATATGTGTCTGTTTT+GGG | - | chr2_3:22613188-22613207 | Msa0284530:intron | 40.0% |
| TACAATCCGAGCTGTTCTTA+GGG | + | chr2_3:22613275-22613294 | None:intergenic | 40.0% | |
| ATACAATCCGAGCTGTTCTT+AGG | + | chr2_3:22613276-22613295 | None:intergenic | 40.0% | |
| ! | TAGATTTGGGATCATTGCAG+TGG | + | chr2_3:22613534-22613553 | None:intergenic | 40.0% |
| !!! | TTTTTTCTGGATTCGGGGTT+GGG | + | chr2_3:22613634-22613653 | None:intergenic | 40.0% |
| !!! | TTTTTTTCTGGATTCGGGGT+TGG | + | chr2_3:22613635-22613654 | None:intergenic | 40.0% |
| CTTTCTCTGTATGGATATCC+CGG | - | chr2_3:22613886-22613905 | Msa0284530:intron | 40.0% | |
| ATGGATATCCCGGTGAATTA+TGG | - | chr2_3:22613896-22613915 | Msa0284530:intron | 40.0% | |
| TGGATATCCCGGTGAATTAT+GGG | - | chr2_3:22613897-22613916 | Msa0284530:intron | 40.0% | |
| AGTGACTTCCCATAATTCAC+CGG | + | chr2_3:22613908-22613927 | None:intergenic | 40.0% | |
| ! | CATTGGGCATCAATTTTGCT+AGG | - | chr2_3:22613968-22613987 | Msa0284530:intron | 40.0% |
| ! | GCATCAATTTTGCTAGGGAT+GGG | - | chr2_3:22613974-22613993 | Msa0284530:intron | 40.0% |
| ATGGGATGCAAGAAAAGGAT+TGG | - | chr2_3:22613992-22614011 | Msa0284530:intron | 40.0% | |
| ! | TTGCTGTTCACAGTGATACA+TGG | - | chr2_3:22614025-22614044 | Msa0284530:intron | 40.0% |
| TATAACGATTAACGGAGACG+CGG | + | chr2_3:22614159-22614178 | None:intergenic | 40.0% | |
| ATGCTACAACTTGTAGCTTC+AGG | + | chr2_3:22614218-22614237 | None:intergenic | 40.0% | |
| TGCAAACTATAGGCAGTAGA+TGG | + | chr2_3:22614604-22614623 | None:intergenic | 40.0% | |
| ATCAAACATAGAGATGCGCA+TGG | + | chr2_3:22614881-22614900 | None:intergenic | 40.0% | |
| GATGCTTAGCATTGTTTGCA+TGG | - | chr2_3:22614898-22614917 | Msa0284530:intron | 40.0% | |
| ATTTGTGTGTGCAAGTGCAT+TGG | - | chr2_3:22614949-22614968 | Msa0284530:intron | 40.0% | |
| ATCTGCTAAGAAGCAGACTA+AGG | - | chr2_3:22615155-22615174 | Msa0284530:intron | 40.0% | |
| AACAGCAACAAGTCAAAGTC+AGG | - | chr2_3:22615201-22615220 | Msa0284530:intron | 40.0% | |
| !! | ACTAGCTCTGTCACTATTGT+AGG | - | chr2_3:22615351-22615370 | Msa0284530:intron | 40.0% |
| ATAATGCTGAATGGAGTCGT+CGG | - | chr2_3:22615415-22615434 | Msa0284530:intron | 40.0% | |
| TATCTGCATCAGATGAGTTC+TGG | - | chr2_3:22615600-22615619 | Msa0284530:intron | 40.0% | |
| ATATGCGAGAAGTGGTATCA+TGG | - | chr2_3:22615635-22615654 | Msa0284530:intron | 40.0% | |
| TCACTTCCCTATGGTATTCA+AGG | + | chr2_3:22615743-22615762 | None:intergenic | 40.0% | |
| AGAAGTAACTCACTTCCCTA+TGG | + | chr2_3:22615752-22615771 | None:intergenic | 40.0% | |
| CCAATATACAGGGAAAAGGT+AGG | + | chr2_3:22615926-22615945 | None:intergenic | 40.0% | |
| ! | CCTACCTTTTCCCTGTATAT+TGG | - | chr2_3:22615923-22615942 | Msa0284530:CDS | 40.0% |
| ! | CATGCTGCATTGGATTTTTC+AGG | - | chr2_3:22616038-22616057 | Msa0284530:five_prime_UTR | 40.0% |
| TATGATCTGCCACATATTGG+CGG | - | chr2_3:22616063-22616082 | Msa0284530:five_prime_UTR | 40.0% | |
| AAAAGGGTCATGGAACTTGC+TGG | - | chr2_3:22612216-22612235 | Msa0284530:three_prime_UTR | 45.0% | |
| TCAACAGTACGAGGGTCAAA+CGG | + | chr2_3:22612252-22612271 | None:intergenic | 45.0% | |
| AGACAGCTTCAACAGTACGA+GGG | + | chr2_3:22612260-22612279 | None:intergenic | 45.0% | |
| AAGACAGCTTCAACAGTACG+AGG | + | chr2_3:22612261-22612280 | None:intergenic | 45.0% | |
| ! | TTTTACCAACAGTGTGACCC+TGG | - | chr2_3:22612460-22612479 | Msa0284530:CDS | 45.0% |
| !! | GAACTCACTGGTTCTATCTC+CGG | + | chr2_3:22612846-22612865 | None:intergenic | 45.0% |
| GTGAAACCCTAAGAACAGCT+CGG | - | chr2_3:22613266-22613285 | Msa0284530:intron | 45.0% | |
| ! | GGTTGGGTTGTTACTGGATT+TGG | + | chr2_3:22613618-22613637 | None:intergenic | 45.0% |
| GTGACTTCCCATAATTCACC+GGG | + | chr2_3:22613907-22613926 | None:intergenic | 45.0% | |
| !! | AATGCAGGTTCTGGAAGTTC+AGG | + | chr2_3:22613952-22613971 | None:intergenic | 45.0% |
| TGAACTTCCAGAACCTGCAT+TGG | - | chr2_3:22613951-22613970 | Msa0284530:intron | 45.0% | |
| GAACTTCCAGAACCTGCATT+GGG | - | chr2_3:22613952-22613971 | Msa0284530:intron | 45.0% | |
| GCAAAATTGATGCCCAATGC+AGG | + | chr2_3:22613967-22613986 | None:intergenic | 45.0% | |
| ! | GGCATCAATTTTGCTAGGGA+TGG | - | chr2_3:22613973-22613992 | Msa0284530:intron | 45.0% |
| TAGGGATGGGATGCAAGAAA+AGG | - | chr2_3:22613987-22614006 | Msa0284530:intron | 45.0% | |
| TGATACATGGCTTCTCTCTG+TGG | - | chr2_3:22614038-22614057 | Msa0284530:intron | 45.0% | |
| CTCTCTGTGGCTTTCTACTT+CGG | - | chr2_3:22614051-22614070 | Msa0284530:intron | 45.0% | |
| TTCTACTTCGGCGCAAGATT+TGG | - | chr2_3:22614063-22614082 | Msa0284530:intron | 45.0% | |
| !! | TTGGCTTTGATAAAGCCGAC+AGG | - | chr2_3:22614082-22614101 | Msa0284530:CDS | 45.0% |
| TCACATCACTCATGCTCATC+AGG | - | chr2_3:22614726-22614745 | Msa0284530:intron | 45.0% | |
| CACATCACTCATGCTCATCA+GGG | - | chr2_3:22614727-22614746 | Msa0284530:intron | 45.0% | |
| AGTCTGCTTCTTAGCAGATC+CGG | + | chr2_3:22615154-22615173 | None:intergenic | 45.0% | |
| CTGTTGTGACTTGAGACAGA+TGG | + | chr2_3:22615186-22615205 | None:intergenic | 45.0% | |
| GTCAAAGTCAGGCTCAAAAG+CGG | - | chr2_3:22615212-22615231 | Msa0284530:intron | 45.0% | |
| ! | TCGTCATCTTCTTTTGCTGG+CGG | + | chr2_3:22615521-22615540 | None:intergenic | 45.0% |
| CCAGCAAAAGAAGATGACGA+GGG | - | chr2_3:22615521-22615540 | Msa0284530:intron | 45.0% | |
| AAAAGAAGATGACGAGGGAG+TGG | - | chr2_3:22615526-22615545 | Msa0284530:intron | 45.0% | |
| ACTCTCTTATTGTTGCAGGC+AGG | + | chr2_3:22615716-22615735 | None:intergenic | 45.0% | |
| CCTGCAACAATAAGAGAGTC+CGG | - | chr2_3:22615717-22615736 | Msa0284530:intron | 45.0% | |
| TTCCCTATGGTATTCAAGGC+CGG | + | chr2_3:22615739-22615758 | None:intergenic | 45.0% | |
| AACTAGTTAGCTGTCCAGCA+TGG | + | chr2_3:22615791-22615810 | None:intergenic | 45.0% | |
| AGGACTGAAACGCACGAAAA+TGG | + | chr2_3:22615839-22615858 | None:intergenic | 45.0% | |
| GCGAGAGAGAGAGAGAGATT+TGG | + | chr2_3:22612141-22612160 | None:intergenic | 50.0% | |
| !! | GTCATGGAACTTGCTGGTGA+TGG | - | chr2_3:22612222-22612241 | Msa0284530:three_prime_UTR | 50.0% |
| AGCTGTCTTCCGTGACTTCA+AGG | - | chr2_3:22612272-22612291 | Msa0284530:three_prime_UTR | 50.0% | |
| GCTGTCTTCCGTGACTTCAA+GGG | - | chr2_3:22612273-22612292 | Msa0284530:three_prime_UTR | 50.0% | |
| GAGAGAGAGAGAGAAACCAG+TGG | + | chr2_3:22612328-22612347 | None:intergenic | 50.0% | |
| CAACAGTGTGACCCTGGTTA+GGG | - | chr2_3:22612466-22612485 | Msa0284530:CDS | 50.0% | |
| TTGAACCAGCCAGTTCGATC+TGG | - | chr2_3:22612960-22612979 | Msa0284530:CDS | 50.0% | |
| CAAAACCAGATCGAACTGGC+TGG | + | chr2_3:22612968-22612987 | None:intergenic | 50.0% | |
| ! | ATTCGGGGTTGGGTTGTTAC+TGG | + | chr2_3:22613624-22613643 | None:intergenic | 50.0% |
| TCAGGAGGAACTTCTTCAGC+AGG | + | chr2_3:22613934-22613953 | None:intergenic | 50.0% | |
| TTGATGCCCAATGCAGGTTC+TGG | + | chr2_3:22613961-22613980 | None:intergenic | 50.0% | |
| ATCACTCATGCTCATCAGGG+AGG | - | chr2_3:22614730-22614749 | Msa0284530:intron | 50.0% | |
| GATTGTTTCCTCATGCAGCG+TGG | - | chr2_3:22615470-22615489 | Msa0284530:intron | 50.0% | |
| GCCAGCAAAAGAAGATGACG+AGG | - | chr2_3:22615520-22615539 | Msa0284530:intron | 50.0% | |
| ! | CCCTCGTCATCTTCTTTTGC+TGG | + | chr2_3:22615524-22615543 | None:intergenic | 50.0% |
| ACGACGAAGAGGAGGATCAA+GGG | - | chr2_3:22615549-22615568 | Msa0284530:intron | 50.0% | |
| GCTGTGACATATGCGAGAAG+TGG | - | chr2_3:22615627-22615646 | Msa0284530:intron | 50.0% | |
| CCGGACTCTCTTATTGTTGC+AGG | + | chr2_3:22615720-22615739 | None:intergenic | 50.0% | |
| AGTCCGGCCTTGAATACCAT+AGG | - | chr2_3:22615733-22615752 | Msa0284530:intron | 50.0% | |
| GTCCGGCCTTGAATACCATA+GGG | - | chr2_3:22615734-22615753 | Msa0284530:intron | 50.0% | |
| TCACTGCTGTAACTCCATGC+TGG | - | chr2_3:22615774-22615793 | Msa0284530:intron | 50.0% | |
| TGTTCGCAAGCATGCTGCAT+TGG | - | chr2_3:22616028-22616047 | Msa0284530:five_prime_UTR | 50.0% | |
| GCTCTGATTCCGCCAATATG+TGG | + | chr2_3:22616075-22616094 | None:intergenic | 50.0% | |
| CTCTACGGCCCTTGAAGTCA+CGG | + | chr2_3:22612284-22612303 | None:intergenic | 55.0% | |
| CCTAACCAGGGTCACACTGT+TGG | + | chr2_3:22612468-22612487 | None:intergenic | 55.0% | |
| CCAACAGTGTGACCCTGGTT+AGG | - | chr2_3:22612465-22612484 | Msa0284530:CDS | 55.0% | |
| !! | CACTGGTTCTATCTCCGGTC+TGG | + | chr2_3:22612841-22612860 | None:intergenic | 55.0% |
| !! | GCAGGTTCTGGAAGTTCAGG+AGG | + | chr2_3:22613949-22613968 | None:intergenic | 55.0% |
| GTTCAGATCCACGCTGCATG+AGG | + | chr2_3:22615481-22615500 | None:intergenic | 55.0% | |
| CATGCAGCGTGGATCTGAAC+TGG | - | chr2_3:22615481-22615500 | Msa0284530:intron | 55.0% | |
| GACGACGAAGAGGAGGATCA+AGG | - | chr2_3:22615548-22615567 | Msa0284530:intron | 55.0% | |
| CGACGAAGAGGAGGATCAAG+GGG | - | chr2_3:22615550-22615569 | Msa0284530:intron | 55.0% | |
| GTGTGAAGATCACTCCTGCC+CGG | - | chr2_3:22615663-22615682 | Msa0284530:intron | 55.0% | |
| TGTGAAGATCACTCCTGCCC+GGG | - | chr2_3:22615664-22615683 | Msa0284530:intron | 55.0% | |
| ACTGCTTGATGTGCTCAGCC+CGG | + | chr2_3:22615685-22615704 | None:intergenic | 55.0% | |
| GACTTCAAGGGCCGTAGAGC+TGG | - | chr2_3:22612285-22612304 | Msa0284530:three_prime_UTR | 60.0% | |
| CAAGGGGAATGCGCTGCATG+CGG | - | chr2_3:22615566-22615585 | Msa0284530:intron | 60.0% | |
| CTGCTTGATGTGCTCAGCCC+GGG | + | chr2_3:22615684-22615703 | None:intergenic | 60.0% | |
| CGAGGGAGTGGACGACGAAG+AGG | - | chr2_3:22615538-22615557 | Msa0284530:intron | 65.0% | |
| GGGAGTGGACGACGAAGAGG+AGG | - | chr2_3:22615541-22615560 | Msa0284530:intron | 65.0% | |
| TTGATGTGCTCAGCCCGGGC+AGG | + | chr2_3:22615680-22615699 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 22612064 | 22616103 | 22612064 | ID=Msa0284530;Name=Msa0284530 |
| chr2_3 | mRNA | 22612064 | 22616103 | 22612064 | ID=Msa0284530-mRNA-1;Parent=Msa0284530;Name=Msa0284530-mRNA-1;_AED=0.08;_eAED=0.08;_QI=161|1|1|1|1|1|5|358|253 |
| chr2_3 | exon | 22612064 | 22612679 | 22612064 | ID=Msa0284530-mRNA-1:exon:8807;Parent=Msa0284530-mRNA-1 |
| chr2_3 | exon | 22612934 | 22613069 | 22612934 | ID=Msa0284530-mRNA-1:exon:8806;Parent=Msa0284530-mRNA-1 |
| chr2_3 | exon | 22614064 | 22614292 | 22614064 | ID=Msa0284530-mRNA-1:exon:8805;Parent=Msa0284530-mRNA-1 |
| chr2_3 | exon | 22615686 | 22615718 | 22615686 | ID=Msa0284530-mRNA-1:exon:8804;Parent=Msa0284530-mRNA-1 |
| chr2_3 | exon | 22615837 | 22616103 | 22615837 | ID=Msa0284530-mRNA-1:exon:8803;Parent=Msa0284530-mRNA-1 |
| chr2_3 | five_prime_UTR | 22615943 | 22616103 | 22615943 | ID=Msa0284530-mRNA-1:five_prime_utr;Parent=Msa0284530-mRNA-1 |
| chr2_3 | CDS | 22615837 | 22615942 | 22615837 | ID=Msa0284530-mRNA-1:cds;Parent=Msa0284530-mRNA-1 |
| chr2_3 | CDS | 22615686 | 22615718 | 22615686 | ID=Msa0284530-mRNA-1:cds;Parent=Msa0284530-mRNA-1 |
| chr2_3 | CDS | 22614064 | 22614292 | 22614064 | ID=Msa0284530-mRNA-1:cds;Parent=Msa0284530-mRNA-1 |
| chr2_3 | CDS | 22612934 | 22613069 | 22612934 | ID=Msa0284530-mRNA-1:cds;Parent=Msa0284530-mRNA-1 |
| chr2_3 | CDS | 22612422 | 22612679 | 22612422 | ID=Msa0284530-mRNA-1:cds;Parent=Msa0284530-mRNA-1 |
| chr2_3 | three_prime_UTR | 22612064 | 22612421 | 22612064 | ID=Msa0284530-mRNA-1:three_prime_utr;Parent=Msa0284530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
