Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246900 | AES88900.2 | 76.207 | 290 | 14 | 3 | 1 | 248 | 1 | 277 | 6.78e-142 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246900 | sp|Q9M2S6|SDIR1_ARATH | 47.917 | 288 | 95 | 5 | 1 | 248 | 1 | 273 | 2.49e-76 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246900 | G7JUX0 | 76.207 | 290 | 14 | 3 | 1 | 248 | 1 | 277 | 3.24e-142 | 409 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0246900 | Msa0548600 | 0.821622 | 3.660453e-53 | -8.615850e-47 |
| Msa0246900 | Msa1466540 | 0.802679 | 5.003659e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246900 | MtrunA17_Chr4g0031911 | 79.225 | 284 | 10 | 2 | 1 | 248 | 1 | 271 | 4.17e-144 | 404 |
| Msa0246900 | MtrunA17_Chr4g0031921 | 78.873 | 284 | 11 | 2 | 1 | 248 | 1 | 271 | 1.54e-140 | 395 |
| Msa0246900 | MtrunA17_Chr3g0112041 | 46.875 | 288 | 98 | 4 | 1 | 248 | 1 | 273 | 7.71e-79 | 238 |
| Msa0246900 | MtrunA17_Chr1g0169651 | 56.000 | 50 | 20 | 1 | 180 | 227 | 675 | 724 | 4.88e-14 | 71.2 |
| Msa0246900 | MtrunA17_Chr6g0461611 | 40.625 | 64 | 36 | 1 | 167 | 230 | 219 | 280 | 6.02e-13 | 67.4 |
| Msa0246900 | MtrunA17_Chr5g0409211 | 32.432 | 111 | 69 | 3 | 128 | 237 | 41 | 146 | 9.03e-13 | 64.7 |
| Msa0246900 | MtrunA17_Chr5g0409201 | 44.828 | 58 | 31 | 1 | 171 | 227 | 78 | 135 | 1.39e-12 | 63.9 |
| Msa0246900 | MtrunA17_Chr2g0317671 | 58.140 | 43 | 17 | 1 | 186 | 227 | 159 | 201 | 2.92e-12 | 63.9 |
| Msa0246900 | MtrunA17_Chr8g0345381 | 36.842 | 76 | 45 | 2 | 159 | 231 | 24 | 99 | 3.14e-12 | 62.8 |
| Msa0246900 | MtrunA17_Chr7g0276591 | 50.000 | 58 | 26 | 2 | 178 | 232 | 91 | 148 | 4.55e-12 | 64.7 |
| Msa0246900 | MtrunA17_Chr3g0133001 | 43.860 | 57 | 31 | 1 | 175 | 230 | 145 | 201 | 5.15e-12 | 65.1 |
| Msa0246900 | MtrunA17_Chr5g0417501 | 44.898 | 49 | 27 | 0 | 182 | 230 | 111 | 159 | 6.66e-12 | 63.2 |
| Msa0246900 | MtrunA17_Chr2g0325141 | 44.262 | 61 | 33 | 1 | 171 | 230 | 76 | 136 | 8.81e-12 | 61.2 |
| Msa0246900 | MtrunA17_Chr1g0200721 | 61.364 | 44 | 16 | 1 | 185 | 227 | 234 | 277 | 1.22e-11 | 63.9 |
| Msa0246900 | MtrunA17_Chr6g0451051 | 39.759 | 83 | 40 | 3 | 169 | 245 | 53 | 131 | 1.50e-11 | 60.8 |
| Msa0246900 | MtrunA17_Chr8g0388201 | 49.123 | 57 | 27 | 2 | 172 | 227 | 334 | 389 | 2.14e-11 | 63.2 |
| Msa0246900 | MtrunA17_Chr8g0388231 | 44.928 | 69 | 30 | 3 | 163 | 227 | 315 | 379 | 2.29e-11 | 63.2 |
| Msa0246900 | MtrunA17_Chr4g0041541 | 44.262 | 61 | 34 | 0 | 173 | 233 | 172 | 232 | 3.09e-11 | 62.0 |
| Msa0246900 | MtrunA17_Chr8g0369691 | 53.061 | 49 | 22 | 1 | 180 | 227 | 439 | 487 | 3.58e-11 | 62.8 |
| Msa0246900 | MtrunA17_Chr8g0345361 | 49.153 | 59 | 24 | 2 | 170 | 227 | 106 | 159 | 3.82e-11 | 61.6 |
| Msa0246900 | MtrunA17_Chr7g0274741 | 49.057 | 53 | 26 | 1 | 176 | 227 | 89 | 141 | 4.03e-11 | 60.5 |
| Msa0246900 | MtrunA17_Chr5g0406031 | 53.333 | 45 | 20 | 1 | 184 | 227 | 187 | 231 | 5.22e-11 | 60.8 |
| Msa0246900 | MtrunA17_Chr8g0350741 | 45.614 | 57 | 24 | 2 | 186 | 241 | 89 | 139 | 5.98e-11 | 59.7 |
| Msa0246900 | MtrunA17_Chr8g0345401 | 34.177 | 79 | 49 | 2 | 163 | 238 | 24 | 102 | 6.05e-11 | 58.9 |
| Msa0246900 | MtrunA17_Chr4g0030831 | 38.983 | 59 | 35 | 1 | 170 | 227 | 96 | 154 | 6.41e-11 | 59.7 |
| Msa0246900 | MtrunA17_Chr5g0427431 | 40.351 | 57 | 33 | 1 | 175 | 230 | 149 | 205 | 9.37e-11 | 61.2 |
| Msa0246900 | MtrunA17_Chr5g0405931 | 43.750 | 48 | 26 | 1 | 186 | 232 | 57 | 104 | 9.67e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246900 | AT3G55530.1 | 47.917 | 288 | 95 | 5 | 1 | 248 | 1 | 273 | 2.53e-77 | 235 |
| Msa0246900 | AT1G14200.1 | 47.917 | 48 | 25 | 0 | 183 | 230 | 106 | 153 | 5.20e-14 | 68.6 |
| Msa0246900 | AT1G35625.1 | 55.357 | 56 | 19 | 2 | 173 | 227 | 225 | 275 | 2.65e-13 | 68.6 |
| Msa0246900 | AT1G04790.1 | 58.140 | 43 | 18 | 0 | 185 | 227 | 588 | 630 | 3.51e-13 | 69.3 |
| Msa0246900 | AT5G08139.1 | 45.283 | 53 | 29 | 0 | 178 | 230 | 301 | 353 | 1.31e-12 | 67.0 |
| Msa0246900 | AT1G80400.1 | 34.746 | 118 | 57 | 3 | 114 | 231 | 303 | 400 | 1.69e-12 | 66.6 |
| Msa0246900 | AT4G32600.1 | 31.624 | 117 | 63 | 2 | 115 | 231 | 309 | 408 | 1.72e-12 | 67.0 |
| Msa0246900 | AT4G32600.2 | 31.624 | 117 | 63 | 2 | 115 | 231 | 309 | 408 | 1.72e-12 | 67.0 |
| Msa0246900 | AT1G71980.1 | 54.000 | 50 | 22 | 1 | 179 | 227 | 225 | 274 | 2.50e-12 | 66.2 |
| Msa0246900 | AT5G66070.5 | 55.556 | 45 | 19 | 1 | 184 | 227 | 174 | 218 | 3.16e-12 | 64.3 |
| Msa0246900 | AT5G66070.1 | 55.556 | 45 | 19 | 1 | 184 | 227 | 174 | 218 | 3.16e-12 | 64.3 |
| Msa0246900 | AT5G66070.2 | 55.556 | 45 | 19 | 1 | 184 | 227 | 198 | 242 | 4.86e-12 | 64.3 |
| Msa0246900 | AT1G53820.1 | 39.506 | 81 | 33 | 3 | 153 | 232 | 102 | 167 | 8.09e-12 | 64.3 |
| Msa0246900 | AT1G35630.1 | 51.852 | 54 | 25 | 1 | 175 | 227 | 222 | 275 | 9.40e-12 | 64.3 |
| Msa0246900 | AT1G22670.1 | 52.000 | 50 | 23 | 1 | 179 | 227 | 225 | 274 | 1.83e-11 | 63.9 |
| Msa0246900 | AT5G66160.1 | 57.143 | 49 | 20 | 1 | 180 | 227 | 226 | 274 | 3.08e-11 | 62.8 |
| Msa0246900 | AT5G66160.2 | 57.143 | 49 | 20 | 1 | 180 | 227 | 226 | 274 | 3.09e-11 | 62.4 |
| Msa0246900 | AT4G35840.2 | 31.333 | 150 | 78 | 8 | 85 | 227 | 134 | 265 | 4.95e-11 | 61.6 |
| Msa0246900 | AT1G21960.1 | 42.857 | 49 | 28 | 0 | 182 | 230 | 154 | 202 | 5.43e-11 | 60.8 |
| Msa0246900 | AT3G58720.4 | 35.366 | 82 | 48 | 1 | 172 | 248 | 145 | 226 | 6.13e-11 | 61.2 |
| Msa0246900 | AT4G40070.1 | 50.000 | 62 | 28 | 2 | 184 | 244 | 122 | 181 | 6.68e-11 | 61.6 |
| Msa0246900 | AT3G58720.1 | 35.366 | 82 | 48 | 1 | 172 | 248 | 125 | 206 | 6.76e-11 | 60.8 |
| Msa0246900 | AT5G56340.1 | 32.308 | 65 | 44 | 0 | 184 | 248 | 257 | 321 | 7.43e-11 | 62.0 |
| Msa0246900 | AT1G26800.1 | 46.667 | 45 | 24 | 0 | 186 | 230 | 113 | 157 | 8.46e-11 | 60.1 |
| Msa0246900 | AT2G17730.1 | 47.170 | 53 | 27 | 1 | 176 | 227 | 186 | 238 | 8.47e-11 | 60.8 |
| Msa0246900 | AT2G35420.1 | 41.176 | 68 | 39 | 1 | 176 | 242 | 93 | 160 | 8.71e-11 | 60.8 |
| Msa0246900 | AT5G05810.1 | 42.105 | 57 | 32 | 1 | 175 | 230 | 135 | 191 | 8.72e-11 | 61.6 |
| Msa0246900 | AT1G72310.1 | 50.000 | 48 | 23 | 1 | 181 | 227 | 122 | 169 | 8.83e-11 | 61.6 |
| Msa0246900 | AT5G24870.3 | 44.898 | 49 | 27 | 0 | 179 | 227 | 461 | 509 | 8.83e-11 | 62.0 |
| Msa0246900 | AT5G24870.1 | 44.898 | 49 | 27 | 0 | 179 | 227 | 461 | 509 | 8.83e-11 | 62.0 |
| Msa0246900 | AT5G24870.2 | 44.898 | 49 | 27 | 0 | 179 | 227 | 461 | 509 | 8.83e-11 | 62.0 |
Find 72 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCATGCTGCAGCAGCCTC+TGG | 0.223994 | 2_2:+28692631 | Msa0246900:CDS |
| ACTTTGAGGGTTCTTGCTTT+TGG | 0.278588 | 2_2:+28692914 | Msa0246900:CDS |
| ACTATCACAACTTACTCTAT+TGG | 0.301919 | 2_2:-28693001 | None:intergenic |
| GTAACTTTATGTTTGTGAAT+AGG | 0.332856 | 2_2:-28692974 | None:intergenic |
| GGCTGCTGCAGCATGAGCCC+TGG | 0.341598 | 2_2:-28692626 | None:intergenic |
| GCAGCAGCCTCTGGGTTACT+TGG | 0.350465 | 2_2:+28692640 | Msa0246900:CDS |
| ATTCACAAACATAAAGTTAC+TGG | 0.368379 | 2_2:+28692977 | Msa0246900:CDS |
| CAACCCATCTTCTTGATCAT+TGG | 0.369702 | 2_2:-28693481 | None:intergenic |
| CTATCACAACTTACTCTATT+GGG | 0.378302 | 2_2:-28693000 | None:intergenic |
| TAGCTTGCCATGCTTGCATC+AGG | 0.383595 | 2_2:+28693551 | Msa0246900:CDS |
| CTCATGCTGCAGCAGCCTCT+GGG | 0.394979 | 2_2:+28692632 | Msa0246900:CDS |
| TACATTTATTTATATAACTA+AGG | 0.397977 | 2_2:-28694201 | None:intergenic |
| TCTATTTATTAAAGTAATGA+AGG | 0.426412 | 2_2:+28694282 | Msa0246900:three_prime_UTR |
| TGCAACAGGAGGAAGATTGC+AGG | 0.437968 | 2_2:+28692705 | Msa0246900:CDS |
| TGTGTAGTATTATTCTGATA+TGG | 0.439827 | 2_2:+28694160 | Msa0246900:exon |
| TACATCTTCAAGCACAGGCC+AGG | 0.441686 | 2_2:+28692608 | Msa0246900:CDS |
| GTTTAATCTGATTCAAACAT+TGG | 0.442066 | 2_2:-28693431 | None:intergenic |
| TCCTGTATGCAAATTTAAGA+TGG | 0.442649 | 2_2:+28694088 | Msa0246900:CDS |
| TACCTATCTCATTAAAATCT+CGG | 0.454083 | 2_2:-28692756 | None:intergenic |
| TGGCAGATTATGACACTTTG+AGG | 0.456834 | 2_2:+28692900 | Msa0246900:intron |
| CCCATCTTAAATTTGCATAC+AGG | 0.461298 | 2_2:-28694089 | None:intergenic |
| GAATGGAGTGTAGCTGAGAA+TGG | 0.485471 | 2_2:-28689504 | None:intergenic |
| CCATCTATAGCATTTGCAAC+AGG | 0.487522 | 2_2:+28692691 | Msa0246900:CDS |
| AATATTCATATGCCAAGCTA+AGG | 0.496594 | 2_2:-28694248 | None:intergenic |
| ATGCCAACTGCATCGATCAA+TGG | 0.497934 | 2_2:+28694045 | Msa0246900:CDS |
| CTCGGTCAAGAAGTGCAAGC+TGG | 0.503206 | 2_2:-28692738 | None:intergenic |
| CATACCATTGAGGTTCTCTC+AGG | 0.503983 | 2_2:-28691798 | None:intergenic |
| CAAGATTTCAAAGGAGAAGA+GGG | 0.508441 | 2_2:+28693453 | Msa0246900:CDS |
| AGTGCCAATGATCAAGAAGA+TGG | 0.508510 | 2_2:+28693477 | Msa0246900:CDS |
| CCTGTATGCAAATTTAAGAT+GGG | 0.513063 | 2_2:+28694089 | Msa0246900:CDS |
| GGCAGATTATGACACTTTGA+GGG | 0.514065 | 2_2:+28692901 | Msa0246900:intron |
| CTCAGCTGCCTCTGAAGAAG+AGG | 0.514485 | 2_2:-28693210 | None:intergenic |
| AGTAGGGGAGATATTGAAAA+CGG | 0.519600 | 2_2:+28691759 | Msa0246900:CDS |
| CCTGTTGCAAATGCTATAGA+TGG | 0.525295 | 2_2:-28692691 | None:intergenic |
| TGAAGAAGAGGATGTCGAAC+CGG | 0.525338 | 2_2:-28693198 | None:intergenic |
| TTTATGTTTGTGAATAGGCA+AGG | 0.528785 | 2_2:-28692969 | None:intergenic |
| TTATCTACATCTTCAAGCAC+AGG | 0.535533 | 2_2:+28692603 | Msa0246900:CDS |
| GTTGACATGCGCTATATGCT+TGG | 0.536298 | 2_2:+28693500 | Msa0246900:CDS |
| TGGTACTCGTTCAATGTCTG+AGG | 0.538572 | 2_2:+28692934 | Msa0246900:CDS |
| TACTTACACGAAAATAAGAA+TGG | 0.539458 | 2_2:-28689521 | None:intergenic |
| ATTGGACCGTACCCTTAGCT+TGG | 0.544129 | 2_2:+28694236 | Msa0246900:three_prime_UTR |
| CTCTTCTTCAGAGGCAGCTG+AGG | 0.544800 | 2_2:+28693211 | Msa0246900:CDS |
| ATTAACAGAGATGGCTCCAC+CGG | 0.546192 | 2_2:+28693179 | Msa0246900:intron |
| ACTGCATCGATCAATGGCTC+CGG | 0.547991 | 2_2:+28694051 | Msa0246900:CDS |
| CGTTAAACCTGATGCAAGCA+TGG | 0.548116 | 2_2:-28693558 | None:intergenic |
| CAGATTAAACAAGATTTCAA+AGG | 0.550749 | 2_2:+28693444 | Msa0246900:CDS |
| AATACTGTCGGTCTTTGTGA+TGG | 0.555712 | 2_2:+28692555 | Msa0246900:CDS |
| TTCGACATCCTCTTCTTCAG+AGG | 0.558298 | 2_2:+28693202 | Msa0246900:CDS |
| ACAAGATTTCAAAGGAGAAG+AGG | 0.559280 | 2_2:+28693452 | Msa0246900:CDS |
| ATGCTTGGACGAAGTTCAGA+GGG | 0.571136 | 2_2:+28693515 | Msa0246900:CDS |
| TGTTCCTGAGAGAACCTCAA+TGG | 0.572879 | 2_2:+28691794 | Msa0246900:CDS |
| ACATCTTCAAGCACAGGCCA+GGG | 0.583038 | 2_2:+28692609 | Msa0246900:CDS |
| CTATTTATTAAAGTAATGAA+GGG | 0.584172 | 2_2:+28694283 | Msa0246900:three_prime_UTR |
| TCAGCGCTGGATAATACTGT+CGG | 0.585921 | 2_2:+28692543 | Msa0246900:intron |
| CTGTATGCAAATTTAAGATG+GGG | 0.599965 | 2_2:+28694090 | Msa0246900:CDS |
| AATAAGTAATCATACCATTG+AGG | 0.600078 | 2_2:-28691808 | None:intergenic |
| GTGCCAATGATCAAGAAGAT+GGG | 0.602726 | 2_2:+28693478 | Msa0246900:CDS |
| TATGCTTGGACGAAGTTCAG+AGG | 0.611074 | 2_2:+28693514 | Msa0246900:CDS |
| GAGCCATTGATCGATGCAGT+TGG | 0.622535 | 2_2:-28694048 | None:intergenic |
| ATATTCATATGCCAAGCTAA+GGG | 0.631176 | 2_2:-28694247 | None:intergenic |
| TACTCGTTCAATGTCTGAGG+AGG | 0.637939 | 2_2:+28692937 | Msa0246900:CDS |
| CATATGCCAAGCTAAGGGTA+CGG | 0.637950 | 2_2:-28694242 | None:intergenic |
| AAGTAACAATGCATGCGAGT+CGG | 0.639134 | 2_2:+28694124 | Msa0246900:CDS |
| AGAAGAGGATGTCGAACCGG+TGG | 0.644248 | 2_2:-28693195 | None:intergenic |
| TCTATAGCATTTGCAACAGG+AGG | 0.645431 | 2_2:+28692694 | Msa0246900:CDS |
| GCTTGGACGAAGTTCAGAGG+GGG | 0.665381 | 2_2:+28693517 | Msa0246900:CDS |
| TGTATGCAAATTTAAGATGG+GGG | 0.673083 | 2_2:+28694091 | Msa0246900:CDS |
| CGTGAACTCGTAATTCAGCA+TGG | 0.674647 | 2_2:-28692663 | None:intergenic |
| TGCTTGGACGAAGTTCAGAG+GGG | 0.707377 | 2_2:+28693516 | Msa0246900:CDS |
| CTTGGACGAAGTTCAGAGGG+GGG | 0.711037 | 2_2:+28693518 | Msa0246900:CDS |
| AGCATGGCCAAGTAACCCAG+AGG | 0.745020 | 2_2:-28692647 | None:intergenic |
| ATTATTCTGATATGGCTGTG+AGG | 0.757301 | 2_2:+28694168 | Msa0246900:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAATCAATTTC+AGG | - | chr2_2:28689884-28689903 | None:intergenic | 10.0% |
| !!! | CAAATTTTATAAATTAATCA+AGG | - | chr2_2:28693841-28693860 | None:intergenic | 10.0% |
| !! | TACATTTATTTATATAACTA+AGG | - | chr2_2:28694204-28694223 | None:intergenic | 10.0% |
| !!! | ATTTTCTTCAAAAATGAAAA+TGG | + | chr2_2:28691413-28691432 | Msa0246900:intron | 15.0% |
| !! | AAAAATAATATATCATCTGA+GGG | - | chr2_2:28692450-28692469 | None:intergenic | 15.0% |
| !! | AAAAAATAATATATCATCTG+AGG | - | chr2_2:28692451-28692470 | None:intergenic | 15.0% |
| !!! | TCAGATGATATATTATTTTT+TGG | + | chr2_2:28692450-28692469 | Msa0246900:intron | 15.0% |
| !! | AAATGTATATATGAACAAAA+AGG | - | chr2_2:28692856-28692875 | None:intergenic | 15.0% |
| !!! | AATGTATATATTTTTGGAAT+TGG | + | chr2_2:28694218-28694237 | Msa0246900:three_prime_UTR | 15.0% |
| !! | TCTATTTATTAAAGTAATGA+AGG | + | chr2_2:28694282-28694301 | Msa0246900:three_prime_UTR | 15.0% |
| !! | CTATTTATTAAAGTAATGAA+GGG | + | chr2_2:28694283-28694302 | Msa0246900:three_prime_UTR | 15.0% |
| !!! | TTATTTTTCTCCCTTAATAT+TGG | + | chr2_2:28689780-28689799 | Msa0246900:intron | 20.0% |
| !! | ATATAATCTTCAAAGATAGA+CGG | + | chr2_2:28689954-28689973 | Msa0246900:intron | 20.0% |
| !! | ATATCATTTCTCTAGATATA+CGG | - | chr2_2:28690505-28690524 | None:intergenic | 20.0% |
| !!! | CTTTTCTATAAATAGACAAT+TGG | - | chr2_2:28690995-28691014 | None:intergenic | 20.0% |
| !!! | CTTTTCTATAAATAGACAAT+TGG | - | chr2_2:28690995-28691014 | None:intergenic | 20.0% |
| !! | TATAATCAGTTCAATAACTT+TGG | + | chr2_2:28691606-28691625 | Msa0246900:intron | 20.0% |
| !!! | TACGCTTATCAAAATAATTT+TGG | - | chr2_2:28691651-28691670 | None:intergenic | 20.0% |
| !! | ATCCTTGTGTAATAAATTAA+AGG | + | chr2_2:28691670-28691689 | Msa0246900:intron | 20.0% |
| !! | AAAATAATATATCATCTGAG+GGG | - | chr2_2:28692449-28692468 | None:intergenic | 20.0% |
| !! | TTATGTTAACTTATTTACCA+TGG | - | chr2_2:28693150-28693169 | None:intergenic | 20.0% |
| !! | AAAGAATTATTTAGCACTAA+TGG | + | chr2_2:28693619-28693638 | Msa0246900:intron | 20.0% |
| ! | TACTTACACGAAAATAAGAA+TGG | - | chr2_2:28689524-28689543 | None:intergenic | 25.0% |
| ! | AAGCTAATTTAACTACTCTT+TGG | - | chr2_2:28689646-28689665 | None:intergenic | 25.0% |
| ! | CATATATAAATGCACTATCT+TGG | + | chr2_2:28689681-28689700 | Msa0246900:intron | 25.0% |
| !!! | TTATGTTGTGGTTTTGATTT+TGG | + | chr2_2:28689748-28689767 | Msa0246900:intron | 25.0% |
| ! | AACACAATCACCAATATTAA+GGG | - | chr2_2:28689793-28689812 | None:intergenic | 25.0% |
| ! | AAACACAATCACCAATATTA+AGG | - | chr2_2:28689794-28689813 | None:intergenic | 25.0% |
| ! | CCTGAAAAGTAAATAGAAAT+AGG | - | chr2_2:28689819-28689838 | None:intergenic | 25.0% |
| !!! | CCTATTTCTATTTACTTTTC+AGG | + | chr2_2:28689816-28689835 | Msa0246900:intron | 25.0% |
| ! | GTTCAAAAGTTGTCATAAAA+TGG | - | chr2_2:28690536-28690555 | None:intergenic | 25.0% |
| ! | ACAACAATAGAAAGAGAAAA+AGG | - | chr2_2:28690603-28690622 | None:intergenic | 25.0% |
| !! | TCTTTTTCTCTCTTCATATT+GGG | - | chr2_2:28690628-28690647 | None:intergenic | 25.0% |
| !! | ATCTTTTTCTCTCTTCATAT+TGG | - | chr2_2:28690629-28690648 | None:intergenic | 25.0% |
| ! | AATATGAAGAGAGAAAAAGA+TGG | + | chr2_2:28690628-28690647 | Msa0246900:intron | 25.0% |
| ! | AACTACACTTAATAGCTATA+CGG | - | chr2_2:28690852-28690871 | None:intergenic | 25.0% |
| ! | GTTTAAGAAAAGATTCGTTT+AGG | + | chr2_2:28690926-28690945 | Msa0246900:intron | 25.0% |
| ! | TCATTAAGCTATACATACAT+CGG | - | chr2_2:28691067-28691086 | None:intergenic | 25.0% |
| ! | AACTACACTTAATAGCTATA+CGG | - | chr2_2:28690852-28690871 | None:intergenic | 25.0% |
| ! | GTTTAAGAAAAGATTCGTTT+AGG | + | chr2_2:28690926-28690945 | Msa0246900:intron | 25.0% |
| !! | ATGTTAAAGTTTTGCAACTT+CGG | + | chr2_2:28691460-28691479 | Msa0246900:intron | 25.0% |
| ! | GAACTGATTATATCCATTTA+AGG | - | chr2_2:28691598-28691617 | None:intergenic | 25.0% |
| !! | CACCTTTAATTTATTACACA+AGG | - | chr2_2:28691675-28691694 | None:intergenic | 25.0% |
| !!! | GTTGTGTTGTTATCAATTTT+CGG | + | chr2_2:28691707-28691726 | Msa0246900:five_prime_UTR | 25.0% |
| ! | AATAAGTAATCATACCATTG+AGG | - | chr2_2:28691811-28691830 | None:intergenic | 25.0% |
| !! | TATGAAGCAATAAAGCATTA+GGG | - | chr2_2:28692351-28692370 | None:intergenic | 25.0% |
| !! | ATATGAAGCAATAAAGCATT+AGG | - | chr2_2:28692352-28692371 | None:intergenic | 25.0% |
| ! | TCATATATGTAGAATCTCAA+TGG | + | chr2_2:28692366-28692385 | Msa0246900:intron | 25.0% |
| ! | ATTTAATGTGTATATGCTAC+TGG | + | chr2_2:28692489-28692508 | Msa0246900:intron | 25.0% |
| ! | TACCTATCTCATTAAAATCT+CGG | - | chr2_2:28692759-28692778 | None:intergenic | 25.0% |
| !!! | AACAAAAAGGCATTTTCTTT+TGG | - | chr2_2:28692843-28692862 | None:intergenic | 25.0% |
| ! | GTAACTTTATGTTTGTGAAT+AGG | - | chr2_2:28692977-28692996 | None:intergenic | 25.0% |
| ! | ATTCACAAACATAAAGTTAC+TGG | + | chr2_2:28692977-28692996 | Msa0246900:CDS | 25.0% |
| ! | AATGAATCATAAGTTGTGAT+AGG | + | chr2_2:28693045-28693064 | Msa0246900:intron | 25.0% |
| ! | TTTGTCTATATTAACAGAGA+TGG | + | chr2_2:28693170-28693189 | Msa0246900:intron | 25.0% |
| ! | GTTTAATCTGATTCAAACAT+TGG | - | chr2_2:28693434-28693453 | None:intergenic | 25.0% |
| ! | CAGATTAAACAAGATTTCAA+AGG | + | chr2_2:28693444-28693463 | Msa0246900:CDS | 25.0% |
| ! | AAATGATGAATGCAAAAGAT+AGG | - | chr2_2:28693587-28693606 | None:intergenic | 25.0% |
| !! | TATTCCAATTTTCAACAAAC+CGG | - | chr2_2:28693729-28693748 | None:intergenic | 25.0% |
| ! | ACATTTGACATAAAAAATGG+TGG | - | chr2_2:28693803-28693822 | None:intergenic | 25.0% |
| ! | CTGACATTTGACATAAAAAA+TGG | - | chr2_2:28693806-28693825 | None:intergenic | 25.0% |
| ! | ATGTTATATTGCTAAAGTTG+AGG | - | chr2_2:28693923-28693942 | None:intergenic | 25.0% |
| ! | TGTGTAGTATTATTCTGATA+TGG | + | chr2_2:28694160-28694179 | Msa0246900:exon | 25.0% |
| TACGAAAACAGTGACAATTA+AGG | - | chr2_2:28689569-28689588 | None:intergenic | 30.0% | |
| ! | TTTACAAGAACCGTTTTGTA+AGG | + | chr2_2:28690039-28690058 | Msa0246900:intron | 30.0% |
| ! | TTACAAGAACCGTTTTGTAA+GGG | + | chr2_2:28690040-28690059 | Msa0246900:intron | 30.0% |
| TTAACTCTACCCTTACAAAA+CGG | - | chr2_2:28690052-28690071 | None:intergenic | 30.0% | |
| GAAGCCAATTAACTATTTGT+AGG | + | chr2_2:28690277-28690296 | Msa0246900:intron | 30.0% | |
| AACTACACTTCATAGCTATA+CGG | - | chr2_2:28690323-28690342 | None:intergenic | 30.0% | |
| GAAGCCAATTATCTATTTGT+AGG | + | chr2_2:28690459-28690478 | Msa0246900:intron | 30.0% | |
| GAAGCCAATTATCTATTTGT+AGG | + | chr2_2:28690459-28690478 | Msa0246900:intron | 30.0% | |
| CCAATTATCTATTTGTAGGT+CGG | + | chr2_2:28690810-28690829 | Msa0246900:intron | 30.0% | |
| GAAGCCAATTATCTATTTGT+AGG | + | chr2_2:28690459-28690478 | Msa0246900:intron | 30.0% | |
| CCAATTATCTATTTGTAGGT+CGG | + | chr2_2:28690810-28690829 | Msa0246900:intron | 30.0% | |
| !! | TGCTTTGTTTGTTCCTTAAA+TGG | + | chr2_2:28691582-28691601 | Msa0246900:intron | 30.0% |
| ! | ATTAAAGGTGTAATACTTGC+AGG | + | chr2_2:28691685-28691704 | Msa0246900:intron | 30.0% |
| ATAAGTTCTCCAAAACAGTT+TGG | - | chr2_2:28692078-28692097 | None:intergenic | 30.0% | |
| !!! | AAACTGTTTTGGAGAACTTA+TGG | + | chr2_2:28692077-28692096 | Msa0246900:intron | 30.0% |
| TTTGTTTCCATAAACTTTCC+AGG | + | chr2_2:28692135-28692154 | Msa0246900:intron | 30.0% | |
| AAGTTATCCTGGAAAGTTTA+TGG | - | chr2_2:28692145-28692164 | None:intergenic | 30.0% | |
| ACCCTTTGCATCTAATAAAA+GGG | + | chr2_2:28692259-28692278 | Msa0246900:intron | 30.0% | |
| ! | ACCCTTTTATTAGATGCAAA+GGG | - | chr2_2:28692263-28692282 | None:intergenic | 30.0% |
| !! | ATAAAAGGGTGCTTAGATAT+AGG | + | chr2_2:28692273-28692292 | Msa0246900:intron | 30.0% |
| !! | TAAAAGGGTGCTTAGATATA+GGG | + | chr2_2:28692274-28692293 | Msa0246900:intron | 30.0% |
| TGAAAAGGATAAAAGGTCAA+TGG | - | chr2_2:28692526-28692545 | None:intergenic | 30.0% | |
| ATAGGTATTATGCTTCTGAA+TGG | + | chr2_2:28692772-28692791 | Msa0246900:intron | 30.0% | |
| !!! | TTGCTTTTTGCTTCATTTTG+TGG | + | chr2_2:28692880-28692899 | Msa0246900:intron | 30.0% |
| TTTATGTTTGTGAATAGGCA+AGG | - | chr2_2:28692972-28692991 | None:intergenic | 30.0% | |
| CTATCACAACTTACTCTATT+GGG | - | chr2_2:28693003-28693022 | None:intergenic | 30.0% | |
| ACTATCACAACTTACTCTAT+TGG | - | chr2_2:28693004-28693023 | None:intergenic | 30.0% | |
| GTTATCTAAACCTTTGCTTA+TGG | + | chr2_2:28693245-28693264 | Msa0246900:intron | 30.0% | |
| ACCTTTGCTTATGGTTTATT+TGG | + | chr2_2:28693254-28693273 | Msa0246900:intron | 30.0% | |
| ACCAAATAAACCATAAGCAA+AGG | - | chr2_2:28693258-28693277 | None:intergenic | 30.0% | |
| !!! | GCATCTATTGTTTTTTGCTT+CGG | + | chr2_2:28693331-28693350 | Msa0246900:intron | 30.0% |
| !!! | CTTTTTTATTTCCCTGGAAT+AGG | + | chr2_2:28693386-28693405 | Msa0246900:intron | 30.0% |
| TAAAATCTCTTCCTATTCCA+GGG | - | chr2_2:28693400-28693419 | None:intergenic | 30.0% | |
| TCCTGTATGCAAATTTAAGA+TGG | + | chr2_2:28694088-28694107 | Msa0246900:CDS | 30.0% | |
| ! | CCTGTATGCAAATTTAAGAT+GGG | + | chr2_2:28694089-28694108 | Msa0246900:CDS | 30.0% |
| ! | CTGTATGCAAATTTAAGATG+GGG | + | chr2_2:28694090-28694109 | Msa0246900:CDS | 30.0% |
| ! | TGTATGCAAATTTAAGATGG+GGG | + | chr2_2:28694091-28694110 | Msa0246900:CDS | 30.0% |
| ATATTCATATGCCAAGCTAA+GGG | - | chr2_2:28694250-28694269 | None:intergenic | 30.0% | |
| AATATTCATATGCCAAGCTA+AGG | - | chr2_2:28694251-28694270 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCGTAACTGTACA+AGG | + | chr2_2:28689577-28689596 | Msa0246900:intron | 35.0% |
| TCACATGAAGAGTTATGTTG+TGG | + | chr2_2:28689736-28689755 | Msa0246900:intron | 35.0% | |
| !!! | TGTTGTGGTTTTGATTTTGG+TGG | + | chr2_2:28689751-28689770 | Msa0246900:intron | 35.0% |
| ! | TCCAGGCTTTTCATCTAATA+CGG | - | chr2_2:28689988-28690007 | None:intergenic | 35.0% |
| CCAATTGTAAACACAATTCC+AGG | - | chr2_2:28690005-28690024 | None:intergenic | 35.0% | |
| CCTGGAATTGTGTTTACAAT+TGG | + | chr2_2:28690002-28690021 | Msa0246900:intron | 35.0% | |
| GGAATTGTGTTTACAATTGG+TGG | + | chr2_2:28690005-28690024 | Msa0246900:intron | 35.0% | |
| CTGATGTCGTCTTAGAATTT+GGG | - | chr2_2:28690081-28690100 | None:intergenic | 35.0% | |
| TCTGATGTCGTCTTAGAATT+TGG | - | chr2_2:28690082-28690101 | None:intergenic | 35.0% | |
| TTAGTCATCACCTTATAAGC+CGG | + | chr2_2:28690190-28690209 | Msa0246900:intron | 35.0% | |
| CGAATCTATTCTTACAACAC+CGG | - | chr2_2:28690212-28690231 | None:intergenic | 35.0% | |
| CCAATTAACTATTTGTAGGC+CGG | + | chr2_2:28690281-28690300 | Msa0246900:intron | 35.0% | |
| CGGATCTATTCTTACAAAAC+CGG | - | chr2_2:28690303-28690322 | None:intergenic | 35.0% | |
| CGAATCTATTCTTACAACAC+CGG | - | chr2_2:28690212-28690231 | None:intergenic | 35.0% | |
| CCAATTATCTATTTGTAGGC+CGG | + | chr2_2:28690463-28690482 | Msa0246900:intron | 35.0% | |
| TCACAAGAGTTGTCACAAAA+TGG | + | chr2_2:28690654-28690673 | Msa0246900:intron | 35.0% | |
| CCAATTACCCATTTGTAAGA+CGG | + | chr2_2:28690719-28690738 | Msa0246900:intron | 35.0% | |
| TACAACACCGTCTTACAAAT+GGG | - | chr2_2:28690729-28690748 | None:intergenic | 35.0% | |
| TTACAACACCGTCTTACAAA+TGG | - | chr2_2:28690730-28690749 | None:intergenic | 35.0% | |
| CCGACCTACAAATAGATAAT+TGG | - | chr2_2:28690813-28690832 | None:intergenic | 35.0% | |
| CCAATTATCCATTTGTAAGC+CGG | + | chr2_2:28690901-28690920 | Msa0246900:intron | 35.0% | |
| ! | CGAATCTTTTCTTAAACCAC+CGG | - | chr2_2:28690923-28690942 | None:intergenic | 35.0% |
| CCAATTACCCATTTGTAAGA+CGG | + | chr2_2:28690719-28690738 | Msa0246900:intron | 35.0% | |
| TACAACACCGTCTTACAAAT+GGG | - | chr2_2:28690729-28690748 | None:intergenic | 35.0% | |
| TTACAACACCGTCTTACAAA+TGG | - | chr2_2:28690730-28690749 | None:intergenic | 35.0% | |
| CCGACCTACAAATAGATAAT+TGG | - | chr2_2:28690813-28690832 | None:intergenic | 35.0% | |
| CCAATTATCCATTTGTAAGC+CGG | + | chr2_2:28690901-28690920 | Msa0246900:intron | 35.0% | |
| ! | CGAATCTTTTCTTAAACCAC+CGG | - | chr2_2:28690923-28690942 | None:intergenic | 35.0% |
| !! | TCATGAGTTTTGCTTTTCGA+GGG | + | chr2_2:28691736-28691755 | Msa0246900:exon | 35.0% |
| AGTAGGGGAGATATTGAAAA+CGG | + | chr2_2:28691759-28691778 | Msa0246900:CDS | 35.0% | |
| GAAAAACCAGACAATTGCTA+TGG | - | chr2_2:28691988-28692007 | None:intergenic | 35.0% | |
| !!! | TGTCTGGTTTTTCTTTTTGC+CGG | + | chr2_2:28691995-28692014 | Msa0246900:intron | 35.0% |
| TTGGCAAGTGTTTATGTTAG+TGG | - | chr2_2:28692059-28692078 | None:intergenic | 35.0% | |
| ! | AAACACTTGCCAAACTGTTT+TGG | + | chr2_2:28692066-28692085 | Msa0246900:intron | 35.0% |
| ! | ACTGTTTTCACAAGTTATCC+TGG | - | chr2_2:28692156-28692175 | None:intergenic | 35.0% |
| CACCCTTTGCATCTAATAAA+AGG | + | chr2_2:28692258-28692277 | Msa0246900:intron | 35.0% | |
| ! | CACCCTTTTATTAGATGCAA+AGG | - | chr2_2:28692264-28692283 | None:intergenic | 35.0% |
| TTATCTACATCTTCAAGCAC+AGG | + | chr2_2:28692603-28692622 | Msa0246900:CDS | 35.0% | |
| !! | GACCGAGATTTTAATGAGAT+AGG | + | chr2_2:28692754-28692773 | Msa0246900:CDS | 35.0% |
| TTGTGATAGGTTCTTGTAGA+AGG | + | chr2_2:28693058-28693077 | Msa0246900:intron | 35.0% | |
| TAGAAGGTAAAGTGGTTAAC+AGG | + | chr2_2:28693074-28693093 | Msa0246900:intron | 35.0% | |
| ! | TTTAATGAAGTGCTAAGCCA+TGG | + | chr2_2:28693130-28693149 | Msa0246900:intron | 35.0% |
| CGTAACTCAAACAACTTAGT+GGG | - | chr2_2:28693281-28693300 | None:intergenic | 35.0% | |
| TCGTAACTCAAACAACTTAG+TGG | - | chr2_2:28693282-28693301 | None:intergenic | 35.0% | |
| ! | CTAAGTTGTTTGAGTTACGA+AGG | + | chr2_2:28693282-28693301 | Msa0246900:intron | 35.0% |
| CCAGGGAAATAAAAAAGTTG+TGG | - | chr2_2:28693383-28693402 | None:intergenic | 35.0% | |
| !!! | CCACAACTTTTTTATTTCCC+TGG | + | chr2_2:28693380-28693399 | Msa0246900:intron | 35.0% |
| CTAAAATCTCTTCCTATTCC+AGG | - | chr2_2:28693401-28693420 | None:intergenic | 35.0% | |
| ACAAGATTTCAAAGGAGAAG+AGG | + | chr2_2:28693452-28693471 | Msa0246900:CDS | 35.0% | |
| CAAGATTTCAAAGGAGAAGA+GGG | + | chr2_2:28693453-28693472 | Msa0246900:CDS | 35.0% | |
| ! | GCTCTCAGATATTTTTCCAA+CGG | - | chr2_2:28693680-28693699 | None:intergenic | 35.0% |
| TTGAGTTCGTATTCTGAATC+CGG | + | chr2_2:28693707-28693726 | Msa0246900:intron | 35.0% | |
| !! | GAATCCGGTTTGTTGAAAAT+TGG | + | chr2_2:28693722-28693741 | Msa0246900:intron | 35.0% |
| ACATTACTCAAAGCTACAAG+TGG | + | chr2_2:28693939-28693958 | Msa0246900:intron | 35.0% | |
| CCCATCTTAAATTTGCATAC+AGG | - | chr2_2:28694092-28694111 | None:intergenic | 35.0% | |
| ATTATTCTGATATGGCTGTG+AGG | + | chr2_2:28694168-28694187 | Msa0246900:three_prime_UTR | 35.0% | |
| ! | CCAGGCTTTTCATCTAATAC+GGG | - | chr2_2:28689987-28690006 | None:intergenic | 40.0% |
| !! | TGGCATAATGGACCATTGAT+AGG | - | chr2_2:28690106-28690125 | None:intergenic | 40.0% |
| !! | TCTTACAACACCGGCTTATA+AGG | - | chr2_2:28690203-28690222 | None:intergenic | 40.0% |
| CCGGCCTACAAATAGTTAAT+TGG | - | chr2_2:28690284-28690303 | None:intergenic | 40.0% | |
| CCAATTATCCATTTGTTCGC+CGG | + | chr2_2:28690372-28690391 | Msa0246900:intron | 40.0% | |
| CCGGCCTACAAATAGATAAT+TGG | - | chr2_2:28690466-28690485 | None:intergenic | 40.0% | |
| CGGATCTATTCTTGCAAAAC+CGG | - | chr2_2:28690485-28690504 | None:intergenic | 40.0% | |
| CCGTCTTACAAATGGGTAAT+TGG | - | chr2_2:28690722-28690741 | None:intergenic | 40.0% | |
| CCGGCTTACAAATGGATAAT+TGG | - | chr2_2:28690904-28690923 | None:intergenic | 40.0% | |
| ATTATCCATTTGTAAGCCGG+TGG | + | chr2_2:28690904-28690923 | Msa0246900:intron | 40.0% | |
| !! | TTAAACCACCGGCTTACAAA+TGG | - | chr2_2:28690912-28690931 | None:intergenic | 40.0% |
| TAGTCAAGACCATGTGCTAA+AGG | + | chr2_2:28691016-28691035 | Msa0246900:intron | 40.0% | |
| AAAATCCGACCTTTAGCACA+TGG | - | chr2_2:28691028-28691047 | None:intergenic | 40.0% | |
| CCGTCTTACAAATGGGTAAT+TGG | - | chr2_2:28690722-28690741 | None:intergenic | 40.0% | |
| CCGGCTTACAAATGGATAAT+TGG | - | chr2_2:28690904-28690923 | None:intergenic | 40.0% | |
| ATTATCCATTTGTAAGCCGG+TGG | + | chr2_2:28690904-28690923 | Msa0246900:intron | 40.0% | |
| !! | TTAAACCACCGGCTTACAAA+TGG | - | chr2_2:28690912-28690931 | None:intergenic | 40.0% |
| TAGTCAAGACCATGTGCTAA+AGG | + | chr2_2:28691016-28691035 | Msa0246900:intron | 40.0% | |
| AAAATCCGACCTTTAGCACA+TGG | - | chr2_2:28691028-28691047 | None:intergenic | 40.0% | |
| TTGCGTGTCTGAAAATCTGT+AGG | + | chr2_2:28691509-28691528 | Msa0246900:intron | 40.0% | |
| TGCGTGTCTGAAAATCTGTA+GGG | + | chr2_2:28691510-28691529 | Msa0246900:intron | 40.0% | |
| !! | GTCATGAGTTTTGCTTTTCG+AGG | + | chr2_2:28691735-28691754 | Msa0246900:exon | 40.0% |
| !! | TTTTGCTTTTCGAGGGAGTA+GGG | + | chr2_2:28691743-28691762 | Msa0246900:CDS | 40.0% |
| ! | AGTATTATCCAGCGCTGAAA+AGG | - | chr2_2:28692541-28692560 | None:intergenic | 40.0% |
| AATACTGTCGGTCTTTGTGA+TGG | + | chr2_2:28692555-28692574 | Msa0246900:CDS | 40.0% | |
| CCTGTTGCAAATGCTATAGA+TGG | - | chr2_2:28692694-28692713 | None:intergenic | 40.0% | |
| CCATCTATAGCATTTGCAAC+AGG | + | chr2_2:28692691-28692710 | Msa0246900:CDS | 40.0% | |
| TCTATAGCATTTGCAACAGG+AGG | + | chr2_2:28692694-28692713 | Msa0246900:CDS | 40.0% | |
| ! | ATGCTTCTGAATGGCACTTT+TGG | + | chr2_2:28692781-28692800 | Msa0246900:intron | 40.0% |
| TGGCAGATTATGACACTTTG+AGG | + | chr2_2:28692900-28692919 | Msa0246900:intron | 40.0% | |
| GGCAGATTATGACACTTTGA+GGG | + | chr2_2:28692901-28692920 | Msa0246900:intron | 40.0% | |
| !! | ACTTTGAGGGTTCTTGCTTT+TGG | + | chr2_2:28692914-28692933 | Msa0246900:CDS | 40.0% |
| GGTTCTTGTAGAAGGTAAAG+TGG | + | chr2_2:28693066-28693085 | Msa0246900:intron | 40.0% | |
| AAAAACGCAGACACGCAAAA+TGG | - | chr2_2:28693111-28693130 | None:intergenic | 40.0% | |
| AGTGCCAATGATCAAGAAGA+TGG | + | chr2_2:28693477-28693496 | Msa0246900:CDS | 40.0% | |
| GTGCCAATGATCAAGAAGAT+GGG | + | chr2_2:28693478-28693497 | Msa0246900:CDS | 40.0% | |
| CAACCCATCTTCTTGATCAT+TGG | - | chr2_2:28693484-28693503 | None:intergenic | 40.0% | |
| GGAGATTAGTGCAGTTAATG+CGG | + | chr2_2:28693640-28693659 | Msa0246900:intron | 40.0% | |
| TACTCAAAGCTACAAGTGGT+TGG | + | chr2_2:28693943-28693962 | Msa0246900:intron | 40.0% | |
| ! | ATGCAAATTTAAGATGGGGG+CGG | + | chr2_2:28694094-28694113 | Msa0246900:CDS | 40.0% |
| AAGTAACAATGCATGCGAGT+CGG | + | chr2_2:28694124-28694143 | Msa0246900:CDS | 40.0% | |
| GAATGGAGTGTAGCTGAGAA+TGG | - | chr2_2:28689507-28689526 | None:intergenic | 45.0% | |
| CCCGTATTAGATGAAAAGCC+TGG | + | chr2_2:28689984-28690003 | Msa0246900:intron | 45.0% | |
| ACGACATCAGAGCCTATCAA+TGG | + | chr2_2:28690091-28690110 | Msa0246900:intron | 45.0% | |
| ATGTCTGATCCTATGCGTGA+AGG | + | chr2_2:28690164-28690183 | Msa0246900:intron | 45.0% | |
| TGTCTGATCCTATGCGTGAA+GGG | + | chr2_2:28690165-28690184 | Msa0246900:intron | 45.0% | |
| CCGGCGAACAAATGGATAAT+TGG | - | chr2_2:28690375-28690394 | None:intergenic | 45.0% | |
| TTACAACACCGGCGAACAAA+TGG | - | chr2_2:28690383-28690402 | None:intergenic | 45.0% | |
| CAAGACCATGTGCTAAAGGT+CGG | + | chr2_2:28691020-28691039 | Msa0246900:intron | 45.0% | |
| CAAGACCATGTGCTAAAGGT+CGG | + | chr2_2:28691020-28691039 | Msa0246900:intron | 45.0% | |
| !! | GTTTTGCTTTTCGAGGGAGT+AGG | + | chr2_2:28691742-28691761 | Msa0246900:CDS | 45.0% |
| !! | TTTGCTTTTCGAGGGAGTAG+GGG | + | chr2_2:28691744-28691763 | Msa0246900:CDS | 45.0% |
| TGTTCCTGAGAGAACCTCAA+TGG | + | chr2_2:28691794-28691813 | Msa0246900:CDS | 45.0% | |
| CATACCATTGAGGTTCTCTC+AGG | - | chr2_2:28691801-28691820 | None:intergenic | 45.0% | |
| !!! | GCTGCTCTTTTTTACCTCAG+CGG | + | chr2_2:28691942-28691961 | Msa0246900:intron | 45.0% |
| !!! | CTGCTCTTTTTTACCTCAGC+GGG | + | chr2_2:28691943-28691962 | Msa0246900:intron | 45.0% |
| ACCAGACAATTGCTATGGAC+TGG | - | chr2_2:28691983-28692002 | None:intergenic | 45.0% | |
| ! | TTTTCTTTTTGCCGGTGAGC+AGG | + | chr2_2:28692003-28692022 | Msa0246900:intron | 45.0% |
| ! | TTTCTTTTTGCCGGTGAGCA+GGG | + | chr2_2:28692004-28692023 | Msa0246900:intron | 45.0% |
| ! | AGGGTGCTTAGATATAGGGA+CGG | + | chr2_2:28692278-28692297 | Msa0246900:intron | 45.0% |
| TGCTTAGATATAGGGACGGA+GGG | + | chr2_2:28692282-28692301 | Msa0246900:intron | 45.0% | |
| ! | CCAGCGCTGAAAAGGATAAA+AGG | - | chr2_2:28692533-28692552 | None:intergenic | 45.0% |
| ! | CCTTTTATCCTTTTCAGCGC+TGG | + | chr2_2:28692530-28692549 | Msa0246900:intron | 45.0% |
| ! | TCAGCGCTGGATAATACTGT+CGG | + | chr2_2:28692543-28692562 | Msa0246900:intron | 45.0% |
| CGTGAACTCGTAATTCAGCA+TGG | - | chr2_2:28692666-28692685 | None:intergenic | 45.0% | |
| TGGTACTCGTTCAATGTCTG+AGG | + | chr2_2:28692934-28692953 | Msa0246900:CDS | 45.0% | |
| TACTCGTTCAATGTCTGAGG+AGG | + | chr2_2:28692937-28692956 | Msa0246900:CDS | 45.0% | |
| ATTAACAGAGATGGCTCCAC+CGG | + | chr2_2:28693179-28693198 | Msa0246900:intron | 45.0% | |
| TGAAGAAGAGGATGTCGAAC+CGG | - | chr2_2:28693201-28693220 | None:intergenic | 45.0% | |
| TTCGACATCCTCTTCTTCAG+AGG | + | chr2_2:28693202-28693221 | Msa0246900:CDS | 45.0% | |
| GTTGACATGCGCTATATGCT+TGG | + | chr2_2:28693500-28693519 | Msa0246900:CDS | 45.0% | |
| TATGCTTGGACGAAGTTCAG+AGG | + | chr2_2:28693514-28693533 | Msa0246900:CDS | 45.0% | |
| ATGCTTGGACGAAGTTCAGA+GGG | + | chr2_2:28693515-28693534 | Msa0246900:CDS | 45.0% | |
| CGTTAAACCTGATGCAAGCA+TGG | - | chr2_2:28693561-28693580 | None:intergenic | 45.0% | |
| CACTCAGTGAATGAAGTCGT+TGG | - | chr2_2:28693772-28693791 | None:intergenic | 45.0% | |
| ! | ATGCCAACTGCATCGATCAA+TGG | + | chr2_2:28694045-28694064 | Msa0246900:CDS | 45.0% |
| ! | TGCAAATTTAAGATGGGGGC+GGG | + | chr2_2:28694095-28694114 | Msa0246900:CDS | 45.0% |
| CATATGCCAAGCTAAGGGTA+CGG | - | chr2_2:28694245-28694264 | None:intergenic | 45.0% | |
| !! | ATTTATATATGAATATTTAA+TGG | - | chr2_2:28689672-28689691 | None:intergenic | 5.0% |
| !!! | TAAATAAATGTATATATTTT+TGG | + | chr2_2:28694212-28694231 | Msa0246900:three_prime_UTR | 5.0% |
| !! | GGCAAGTGGCATTGGCATAA+TGG | - | chr2_2:28690118-28690137 | None:intergenic | 50.0% |
| ! | CATCTAGAGCATGATCCGAG+TGG | - | chr2_2:28690147-28690166 | None:intergenic | 50.0% |
| GTCTGATCCTATGCGTGAAG+GGG | + | chr2_2:28690166-28690185 | Msa0246900:intron | 50.0% | |
| TCTGATCCTATGCGTGAAGG+GGG | + | chr2_2:28690167-28690186 | Msa0246900:intron | 50.0% | |
| GCCAGTCCATAGCAATTGTC+TGG | + | chr2_2:28691979-28691998 | Msa0246900:intron | 50.0% | |
| TCAATGTAGACCCTGCTCAC+CGG | - | chr2_2:28692017-28692036 | None:intergenic | 50.0% | |
| !! | GCAAAGGGTGCTTGCATACA+GGG | - | chr2_2:28692248-28692267 | None:intergenic | 50.0% |
| !! | TGCAAAGGGTGCTTGCATAC+AGG | - | chr2_2:28692249-28692268 | None:intergenic | 50.0% |
| GTGCTTAGATATAGGGACGG+AGG | + | chr2_2:28692281-28692300 | Msa0246900:intron | 50.0% | |
| TACATCTTCAAGCACAGGCC+AGG | + | chr2_2:28692608-28692627 | Msa0246900:CDS | 50.0% | |
| ACATCTTCAAGCACAGGCCA+GGG | + | chr2_2:28692609-28692628 | Msa0246900:CDS | 50.0% | |
| TGCAACAGGAGGAAGATTGC+AGG | + | chr2_2:28692705-28692724 | Msa0246900:CDS | 50.0% | |
| TGCTTGGACGAAGTTCAGAG+GGG | + | chr2_2:28693516-28693535 | Msa0246900:CDS | 50.0% | |
| ! | TAGCTTGCCATGCTTGCATC+AGG | + | chr2_2:28693551-28693570 | Msa0246900:CDS | 50.0% |
| GGTCAGCAAATTAGAGCCGT+TGG | + | chr2_2:28693661-28693680 | Msa0246900:intron | 50.0% | |
| CGATGCAGTTGGCATGAAAC+TGG | - | chr2_2:28694040-28694059 | None:intergenic | 50.0% | |
| GAGCCATTGATCGATGCAGT+TGG | - | chr2_2:28694051-28694070 | None:intergenic | 50.0% | |
| ! | ACTGCATCGATCAATGGCTC+CGG | + | chr2_2:28694051-28694070 | Msa0246900:CDS | 50.0% |
| ! | CAGGACATGTTCGTTTTCGC+CGG | - | chr2_2:28694073-28694092 | None:intergenic | 50.0% |
| ! | AATTTAAGATGGGGGCGGGA+TGG | + | chr2_2:28694099-28694118 | Msa0246900:CDS | 50.0% |
| ATTGGACCGTACCCTTAGCT+TGG | + | chr2_2:28694236-28694255 | Msa0246900:three_prime_UTR | 50.0% | |
| ! | TGCCAATGCCACTTGCCATG+AGG | + | chr2_2:28690121-28690140 | Msa0246900:intron | 55.0% |
| GACTAACCCCCTTCACGCAT+AGG | - | chr2_2:28690176-28690195 | None:intergenic | 55.0% | |
| !! | TTGCTATGGACTGGCCGAGA+TGG | - | chr2_2:28691974-28691993 | None:intergenic | 55.0% |
| TGCTTGCATACAGGGACGGA+GGG | - | chr2_2:28692240-28692259 | None:intergenic | 55.0% | |
| ! | AGGGTGCTTGCATACAGGGA+CGG | - | chr2_2:28692244-28692263 | None:intergenic | 55.0% |
| AGCATGGCCAAGTAACCCAG+AGG | - | chr2_2:28692650-28692669 | None:intergenic | 55.0% | |
| ! | CTCGGTCAAGAAGTGCAAGC+TGG | - | chr2_2:28692741-28692760 | None:intergenic | 55.0% |
| AGAAGAGGATGTCGAACCGG+TGG | - | chr2_2:28693198-28693217 | None:intergenic | 55.0% | |
| ! | CTCAGCTGCCTCTGAAGAAG+AGG | - | chr2_2:28693213-28693232 | None:intergenic | 55.0% |
| CTCTTCTTCAGAGGCAGCTG+AGG | + | chr2_2:28693211-28693230 | Msa0246900:CDS | 55.0% | |
| GCTTGGACGAAGTTCAGAGG+GGG | + | chr2_2:28693517-28693536 | Msa0246900:CDS | 55.0% | |
| CTTGGACGAAGTTCAGAGGG+GGG | + | chr2_2:28693518-28693537 | Msa0246900:CDS | 55.0% | |
| GGCCTCATGGCAAGTGGCAT+TGG | - | chr2_2:28690126-28690145 | None:intergenic | 60.0% | |
| CCACTTGCCATGAGGCCACT+CGG | + | chr2_2:28690129-28690148 | Msa0246900:intron | 60.0% | |
| GCATGATCCGAGTGGCCTCA+TGG | - | chr2_2:28690139-28690158 | None:intergenic | 60.0% | |
| ! | CTCAGCGGGTTCGTCCATCT+CGG | + | chr2_2:28691957-28691976 | Msa0246900:intron | 60.0% |
| GTGCTTGCATACAGGGACGG+AGG | - | chr2_2:28692241-28692260 | None:intergenic | 60.0% | |
| CTCATGCTGCAGCAGCCTCT+GGG | + | chr2_2:28692632-28692651 | Msa0246900:CDS | 60.0% | |
| GCAGCAGCCTCTGGGTTACT+TGG | + | chr2_2:28692640-28692659 | Msa0246900:CDS | 60.0% | |
| CCGAGTGGCCTCATGGCAAG+TGG | - | chr2_2:28690132-28690151 | None:intergenic | 65.0% | |
| CGAGATGGACGAACCCGCTG+AGG | - | chr2_2:28691959-28691978 | None:intergenic | 65.0% | |
| GCTCATGCTGCAGCAGCCTC+TGG | + | chr2_2:28692631-28692650 | Msa0246900:CDS | 65.0% | |
| GGCTGCTGCAGCATGAGCCC+TGG | - | chr2_2:28692629-28692648 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 28689477 | 28694319 | 28689477 | ID=Msa0246900;Name=Msa0246900 |
| chr2_2 | mRNA | 28689477 | 28694319 | 28689477 | ID=Msa0246900-mRNA-1;Parent=Msa0246900;Name=Msa0246900-mRNA-1;_AED=0.28;_eAED=0.28;_QI=91|0.66|0.71|1|0.83|0.71|7|153|248 |
| chr2_2 | exon | 28689477 | 28689536 | 28689477 | ID=Msa0246900-mRNA-1:exon:10274;Parent=Msa0246900-mRNA-1 |
| chr2_2 | exon | 28691707 | 28691815 | 28691707 | ID=Msa0246900-mRNA-1:exon:10275;Parent=Msa0246900-mRNA-1 |
| chr2_2 | exon | 28692547 | 28692775 | 28692547 | ID=Msa0246900-mRNA-1:exon:10276;Parent=Msa0246900-mRNA-1 |
| chr2_2 | exon | 28692906 | 28693008 | 28692906 | ID=Msa0246900-mRNA-1:exon:10277;Parent=Msa0246900-mRNA-1 |
| chr2_2 | exon | 28693187 | 28693232 | 28693187 | ID=Msa0246900-mRNA-1:exon:10278;Parent=Msa0246900-mRNA-1 |
| chr2_2 | exon | 28693408 | 28693572 | 28693408 | ID=Msa0246900-mRNA-1:exon:10279;Parent=Msa0246900-mRNA-1 |
| chr2_2 | exon | 28694041 | 28694319 | 28694041 | ID=Msa0246900-mRNA-1:exon:10280;Parent=Msa0246900-mRNA-1 |
| chr2_2 | five_prime_UTR | 28689477 | 28689536 | 28689477 | ID=Msa0246900-mRNA-1:five_prime_utr;Parent=Msa0246900-mRNA-1 |
| chr2_2 | five_prime_UTR | 28691707 | 28691737 | 28691707 | ID=Msa0246900-mRNA-1:five_prime_utr;Parent=Msa0246900-mRNA-1 |
| chr2_2 | CDS | 28691738 | 28691815 | 28691738 | ID=Msa0246900-mRNA-1:cds;Parent=Msa0246900-mRNA-1 |
| chr2_2 | CDS | 28692547 | 28692775 | 28692547 | ID=Msa0246900-mRNA-1:cds;Parent=Msa0246900-mRNA-1 |
| chr2_2 | CDS | 28692906 | 28693008 | 28692906 | ID=Msa0246900-mRNA-1:cds;Parent=Msa0246900-mRNA-1 |
| chr2_2 | CDS | 28693187 | 28693232 | 28693187 | ID=Msa0246900-mRNA-1:cds;Parent=Msa0246900-mRNA-1 |
| chr2_2 | CDS | 28693408 | 28693572 | 28693408 | ID=Msa0246900-mRNA-1:cds;Parent=Msa0246900-mRNA-1 |
| chr2_2 | CDS | 28694041 | 28694166 | 28694041 | ID=Msa0246900-mRNA-1:cds;Parent=Msa0246900-mRNA-1 |
| chr2_2 | three_prime_UTR | 28694167 | 28694319 | 28694167 | ID=Msa0246900-mRNA-1:three_prime_utr;Parent=Msa0246900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
