Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548600 | AES88900.2 | 76.207 | 290 | 14 | 3 | 1 | 248 | 1 | 277 | 7.57e-142 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548600 | sp|Q9M2S6|SDIR1_ARATH | 48.264 | 288 | 94 | 5 | 1 | 248 | 1 | 273 | 1.01e-76 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548600 | G7JUX0 | 76.207 | 290 | 14 | 3 | 1 | 248 | 1 | 277 | 3.62e-142 | 409 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090570 | Msa0548600 | 0.803021 | 4.251787e-49 | -8.615850e-47 |
| Msa0127800 | Msa0548600 | 0.813289 | 2.760325e-51 | -8.615850e-47 |
| Msa0367870 | Msa0548600 | 0.800605 | 1.332876e-48 | -8.615850e-47 |
| Msa0386090 | Msa0548600 | 0.803910 | 2.781824e-49 | -8.615850e-47 |
| Msa0246900 | Msa0548600 | 0.821622 | 3.660453e-53 | -8.615850e-47 |
| Msa0267370 | Msa0548600 | 0.839759 | 1.307694e-57 | -8.615850e-47 |
| Msa0287740 | Msa0548600 | 0.819567 | 1.085169e-52 | -8.615850e-47 |
| Msa0532990 | Msa0548600 | 0.810341 | 1.209747e-50 | -8.615850e-47 |
| Msa0548600 | Msa0661650 | 0.837469 | 5.104649e-57 | -8.615850e-47 |
| Msa0548600 | Msa0927310 | 0.806596 | 7.619112e-50 | -8.615850e-47 |
| Msa0548600 | Msa0967870 | 0.807527 | 4.839516e-50 | -8.615850e-47 |
| Msa0548600 | Msa0999290 | 0.804133 | 2.500565e-49 | -8.615850e-47 |
| Msa0548600 | Msa1035480 | 0.812363 | 4.402538e-51 | -8.615850e-47 |
| Msa0548600 | Msa1036610 | 0.818067 | 2.378544e-52 | -8.615850e-47 |
| Msa0548600 | Msa1075650 | 0.805527 | 1.278611e-49 | -8.615850e-47 |
| Msa0548600 | Msa1100050 | 0.811521 | 6.716694e-51 | -8.615850e-47 |
| Msa0548600 | Msa1121480 | 0.800133 | 1.662893e-48 | -8.615850e-47 |
| Msa0548600 | Msa1121490 | 0.817980 | 2.488971e-52 | -8.615850e-47 |
| Msa0548600 | Msa1147740 | 0.802221 | 6.218377e-49 | -8.615850e-47 |
| Msa0548600 | Msa1162780 | 0.839444 | 1.578424e-57 | -8.615850e-47 |
| Msa0548600 | Msa1163090 | 0.808896 | 2.471875e-50 | -8.615850e-47 |
| Msa0548600 | Msa1181910 | 0.819522 | 1.111263e-52 | -8.615850e-47 |
| Msa0548600 | Msa1366810 | 0.802678 | 5.006331e-49 | -8.615850e-47 |
| Msa0548600 | Msa1392240 | 0.833463 | 5.256194e-56 | -8.615850e-47 |
| Msa0548600 | Msa1405170 | 0.860144 | 2.533957e-63 | -8.615850e-47 |
| Msa0548600 | Msa1440560 | 0.822705 | 2.053422e-53 | -8.615850e-47 |
| Msa0548600 | Msa1466540 | 0.811678 | 6.207548e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548600 | MtrunA17_Chr4g0031911 | 79.225 | 284 | 10 | 2 | 1 | 248 | 1 | 271 | 4.50e-144 | 404 |
| Msa0548600 | MtrunA17_Chr4g0031921 | 78.873 | 284 | 11 | 2 | 1 | 248 | 1 | 271 | 2.58e-140 | 394 |
| Msa0548600 | MtrunA17_Chr3g0112041 | 47.222 | 288 | 97 | 4 | 1 | 248 | 1 | 273 | 8.36e-80 | 241 |
| Msa0548600 | MtrunA17_Chr1g0169651 | 56.000 | 50 | 20 | 1 | 180 | 227 | 675 | 724 | 8.25e-14 | 70.5 |
| Msa0548600 | MtrunA17_Chr6g0461611 | 40.625 | 64 | 36 | 1 | 167 | 230 | 219 | 280 | 7.36e-13 | 67.0 |
| Msa0548600 | MtrunA17_Chr5g0409211 | 32.432 | 111 | 69 | 3 | 128 | 237 | 41 | 146 | 8.00e-13 | 64.7 |
| Msa0548600 | MtrunA17_Chr5g0409201 | 44.828 | 58 | 31 | 1 | 171 | 227 | 78 | 135 | 1.81e-12 | 63.5 |
| Msa0548600 | MtrunA17_Chr8g0345381 | 36.842 | 76 | 45 | 2 | 159 | 231 | 24 | 99 | 3.88e-12 | 62.4 |
| Msa0548600 | MtrunA17_Chr2g0317671 | 58.140 | 43 | 17 | 1 | 186 | 227 | 159 | 201 | 4.06e-12 | 63.5 |
| Msa0548600 | MtrunA17_Chr7g0276591 | 50.000 | 58 | 26 | 2 | 178 | 232 | 91 | 148 | 5.79e-12 | 64.3 |
| Msa0548600 | MtrunA17_Chr3g0133001 | 43.860 | 57 | 31 | 1 | 175 | 230 | 145 | 201 | 6.89e-12 | 64.7 |
| Msa0548600 | MtrunA17_Chr2g0325141 | 44.262 | 61 | 33 | 1 | 171 | 230 | 76 | 136 | 8.90e-12 | 61.2 |
| Msa0548600 | MtrunA17_Chr5g0417501 | 44.898 | 49 | 27 | 0 | 182 | 230 | 111 | 159 | 9.78e-12 | 62.8 |
| Msa0548600 | MtrunA17_Chr1g0200721 | 61.364 | 44 | 16 | 1 | 185 | 227 | 234 | 277 | 1.86e-11 | 63.5 |
| Msa0548600 | MtrunA17_Chr6g0451051 | 43.077 | 65 | 32 | 2 | 169 | 232 | 53 | 113 | 2.07e-11 | 60.5 |
| Msa0548600 | MtrunA17_Chr8g0388231 | 44.928 | 69 | 30 | 3 | 163 | 227 | 315 | 379 | 2.78e-11 | 62.8 |
| Msa0548600 | MtrunA17_Chr8g0388201 | 49.123 | 57 | 27 | 2 | 172 | 227 | 334 | 389 | 3.32e-11 | 62.4 |
| Msa0548600 | MtrunA17_Chr4g0041541 | 44.262 | 61 | 34 | 0 | 173 | 233 | 172 | 232 | 4.20e-11 | 61.6 |
| Msa0548600 | MtrunA17_Chr7g0274741 | 49.057 | 53 | 26 | 1 | 176 | 227 | 89 | 141 | 4.63e-11 | 60.1 |
| Msa0548600 | MtrunA17_Chr8g0369691 | 53.061 | 49 | 22 | 1 | 180 | 227 | 439 | 487 | 4.86e-11 | 62.4 |
| Msa0548600 | MtrunA17_Chr8g0345361 | 49.153 | 59 | 24 | 2 | 170 | 227 | 106 | 159 | 5.47e-11 | 60.8 |
| Msa0548600 | MtrunA17_Chr5g0406031 | 53.333 | 45 | 20 | 1 | 184 | 227 | 187 | 231 | 7.42e-11 | 60.5 |
| Msa0548600 | MtrunA17_Chr4g0030831 | 38.983 | 59 | 35 | 1 | 170 | 227 | 96 | 154 | 7.74e-11 | 59.3 |
| Msa0548600 | MtrunA17_Chr8g0350741 | 45.614 | 57 | 24 | 2 | 186 | 241 | 89 | 139 | 8.06e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548600 | AT3G55530.1 | 48.264 | 288 | 94 | 5 | 1 | 248 | 1 | 273 | 1.02e-77 | 236 |
| Msa0548600 | AT1G14200.1 | 47.917 | 48 | 25 | 0 | 183 | 230 | 106 | 153 | 6.77e-14 | 68.2 |
| Msa0548600 | AT1G35625.1 | 55.357 | 56 | 19 | 2 | 173 | 227 | 225 | 275 | 3.87e-13 | 68.2 |
| Msa0548600 | AT1G04790.1 | 58.140 | 43 | 18 | 0 | 185 | 227 | 588 | 630 | 6.21e-13 | 68.6 |
| Msa0548600 | AT4G32600.1 | 31.624 | 117 | 63 | 2 | 115 | 231 | 309 | 408 | 1.78e-12 | 67.0 |
| Msa0548600 | AT4G32600.2 | 31.624 | 117 | 63 | 2 | 115 | 231 | 309 | 408 | 1.78e-12 | 67.0 |
| Msa0548600 | AT5G08139.1 | 45.283 | 53 | 29 | 0 | 178 | 230 | 301 | 353 | 1.91e-12 | 66.6 |
| Msa0548600 | AT1G80400.1 | 34.746 | 118 | 57 | 3 | 114 | 231 | 303 | 400 | 2.23e-12 | 66.6 |
| Msa0548600 | AT1G71980.1 | 54.000 | 50 | 22 | 1 | 179 | 227 | 225 | 274 | 3.71e-12 | 65.9 |
| Msa0548600 | AT5G66070.5 | 55.556 | 45 | 19 | 1 | 184 | 227 | 174 | 218 | 4.79e-12 | 63.9 |
| Msa0548600 | AT5G66070.1 | 55.556 | 45 | 19 | 1 | 184 | 227 | 174 | 218 | 4.79e-12 | 63.9 |
| Msa0548600 | AT5G66070.2 | 55.556 | 45 | 19 | 1 | 184 | 227 | 198 | 242 | 6.92e-12 | 63.9 |
| Msa0548600 | AT1G53820.1 | 39.506 | 81 | 33 | 3 | 153 | 232 | 102 | 167 | 1.15e-11 | 63.9 |
| Msa0548600 | AT1G35630.1 | 51.852 | 54 | 25 | 1 | 175 | 227 | 222 | 275 | 1.18e-11 | 63.9 |
| Msa0548600 | AT1G22670.1 | 52.000 | 50 | 23 | 1 | 179 | 227 | 225 | 274 | 2.25e-11 | 63.5 |
| Msa0548600 | AT5G66160.2 | 57.143 | 49 | 20 | 1 | 180 | 227 | 226 | 274 | 3.81e-11 | 62.4 |
| Msa0548600 | AT5G66160.1 | 57.143 | 49 | 20 | 1 | 180 | 227 | 226 | 274 | 3.94e-11 | 62.4 |
| Msa0548600 | AT4G35840.2 | 30.667 | 150 | 79 | 7 | 85 | 227 | 134 | 265 | 6.24e-11 | 61.6 |
| Msa0548600 | AT1G21960.1 | 42.857 | 49 | 28 | 0 | 182 | 230 | 154 | 202 | 6.68e-11 | 60.5 |
Find 73 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCATGCTGCAGCAGCCTC+TGG | 0.223994 | 4_1:-42788281 | Msa0548600:CDS |
| ACTTTGAGGGTTCTTGCTTT+TGG | 0.278588 | 4_1:-42787998 | Msa0548600:CDS |
| ACTATCACAACTTACTCTAT+TGG | 0.301919 | 4_1:+42787911 | None:intergenic |
| GTAACTTTATGTTTGTGAAT+AGG | 0.332856 | 4_1:+42787938 | None:intergenic |
| GGCTGCTGCAGCATGAGCCC+TGG | 0.341598 | 4_1:+42788286 | None:intergenic |
| GCAGCAGCCTCTGGGTTACT+TGG | 0.350465 | 4_1:-42788272 | Msa0548600:CDS |
| ATTCACAAACATAAAGTTAC+TGG | 0.368379 | 4_1:-42787935 | Msa0548600:CDS |
| CAACCCATCTTCTTGATCAT+TGG | 0.369702 | 4_1:+42787431 | None:intergenic |
| CTATCACAACTTACTCTATT+GGG | 0.378302 | 4_1:+42787912 | None:intergenic |
| TAGCTTGCCATGCTTGCATC+AGG | 0.383595 | 4_1:-42787361 | Msa0548600:intron |
| CTCATGCTGCAGCAGCCTCT+GGG | 0.394979 | 4_1:-42788280 | Msa0548600:CDS |
| TCTATTTATTAAAGTAATGA+AGG | 0.426412 | 4_1:-42786630 | Msa0548600:three_prime_UTR |
| TGCAACAGGAGGAAGATTGC+AGG | 0.437968 | 4_1:-42788207 | Msa0548600:CDS |
| TGTGTAGTATTATTCTGATA+TGG | 0.439827 | 4_1:-42786752 | Msa0548600:exon |
| TACATCTTCAAGCACAGGCC+AGG | 0.441686 | 4_1:-42788304 | Msa0548600:CDS |
| GTTTAATCTGATTCAAACAT+TGG | 0.442066 | 4_1:+42787481 | None:intergenic |
| TCCTGTATGCAAATTTAAGA+TGG | 0.442649 | 4_1:-42786824 | Msa0548600:CDS |
| TACCTATCTCATTAAAATCT+CGG | 0.454083 | 4_1:+42788156 | None:intergenic |
| TGGCAGATTATGACACTTTG+AGG | 0.456834 | 4_1:-42788012 | Msa0548600:intron |
| CCCATCTTAAATTTGCATAC+AGG | 0.461298 | 4_1:+42786823 | None:intergenic |
| GAATGGAGTGTAGCTGAGAA+TGG | 0.485471 | 4_1:+42791038 | None:intergenic |
| CCATCTATAGCATTTGCAAC+AGG | 0.492962 | 4_1:-42788221 | Msa0548600:CDS |
| AATATTCATATGCCAAGCTA+AGG | 0.496594 | 4_1:+42786664 | None:intergenic |
| ATGCCAACTGCATCGATCAA+TGG | 0.497934 | 4_1:-42786867 | Msa0548600:CDS |
| TACATTTATTTATATAACTC+AGG | 0.499990 | 4_1:+42786711 | None:intergenic |
| CTCGGTCAAGAAGTGCAAGC+TGG | 0.503206 | 4_1:+42788174 | None:intergenic |
| CATACCATTGAGGTTCTCTC+AGG | 0.503983 | 4_1:+42789114 | None:intergenic |
| CAAGATTTCAAAGGAGAAGA+GGG | 0.508441 | 4_1:-42787459 | Msa0548600:CDS |
| AGTGCCAATGATCAAGAAGA+TGG | 0.508510 | 4_1:-42787435 | Msa0548600:CDS |
| CCTGTATGCAAATTTAAGAT+GGG | 0.513063 | 4_1:-42786823 | Msa0548600:CDS |
| GGCAGATTATGACACTTTGA+GGG | 0.514065 | 4_1:-42788011 | Msa0548600:intron |
| CTCAGCTGCCTCTGAAGAAG+AGG | 0.514485 | 4_1:+42787702 | None:intergenic |
| AGTAGGGGAGATATTGAAAA+CGG | 0.519600 | 4_1:-42789153 | Msa0548600:CDS |
| TGAAGAAGAGGATGTCGAAC+CGG | 0.525338 | 4_1:+42787714 | None:intergenic |
| CCTGTTGCAAATGCTATAGA+TGG | 0.526351 | 4_1:+42788221 | None:intergenic |
| TTTATGTTTGTGAATAGGCA+AGG | 0.528785 | 4_1:+42787943 | None:intergenic |
| TTATCTACATCTTCAAGCAC+AGG | 0.535533 | 4_1:-42788309 | Msa0548600:CDS |
| GTTGACATGCGCTATATGCT+TGG | 0.536298 | 4_1:-42787412 | Msa0548600:CDS |
| TGGTACTCGTTCAATGTCTG+AGG | 0.538572 | 4_1:-42787978 | Msa0548600:CDS |
| TACTTACACGAAAATAAGAA+TGG | 0.539458 | 4_1:+42791021 | None:intergenic |
| ATTGGACCGTACCCTTAGCT+TGG | 0.544129 | 4_1:-42786676 | Msa0548600:three_prime_UTR |
| CTCTTCTTCAGAGGCAGCTG+AGG | 0.544800 | 4_1:-42787701 | Msa0548600:intron |
| ATTAACAGAGATGGCTCCAC+CGG | 0.546192 | 4_1:-42787733 | Msa0548600:intron |
| ACTGCATCGATCAATGGCTC+CGG | 0.547991 | 4_1:-42786861 | Msa0548600:CDS |
| CGTTAAACCTGATGCAAGCA+TGG | 0.548116 | 4_1:+42787354 | None:intergenic |
| CAGATTAAACAAGATTTCAA+AGG | 0.550749 | 4_1:-42787468 | Msa0548600:CDS |
| AATACTGTCGGTCTTTGTGA+TGG | 0.555712 | 4_1:-42788357 | Msa0548600:CDS |
| TTCGACATCCTCTTCTTCAG+AGG | 0.558298 | 4_1:-42787710 | Msa0548600:CDS |
| ACAAGATTTCAAAGGAGAAG+AGG | 0.559280 | 4_1:-42787460 | Msa0548600:CDS |
| ATGCTTGGACGAAGTTCAGA+GGG | 0.571136 | 4_1:-42787397 | Msa0548600:CDS |
| TGTTCCTGAGAGAACCTCAA+TGG | 0.572879 | 4_1:-42789118 | Msa0548600:intron |
| ACATCTTCAAGCACAGGCCA+GGG | 0.583038 | 4_1:-42788303 | Msa0548600:CDS |
| CTATTTATTAAAGTAATGAA+GGG | 0.584172 | 4_1:-42786629 | Msa0548600:three_prime_UTR |
| TCAGCGCTGGATAATACTGT+CGG | 0.585921 | 4_1:-42788369 | Msa0548600:intron |
| CTGTATGCAAATTTAAGATG+GGG | 0.599965 | 4_1:-42786822 | Msa0548600:CDS |
| AATAAGTAATCATACCATTG+AGG | 0.600078 | 4_1:+42789104 | None:intergenic |
| GTGCCAATGATCAAGAAGAT+GGG | 0.602726 | 4_1:-42787434 | Msa0548600:CDS |
| TATGCTTGGACGAAGTTCAG+AGG | 0.611074 | 4_1:-42787398 | Msa0548600:CDS |
| GAGCCATTGATCGATGCAGT+TGG | 0.622535 | 4_1:+42786864 | None:intergenic |
| ATATTCATATGCCAAGCTAA+GGG | 0.631176 | 4_1:+42786665 | None:intergenic |
| ATGTAACAATGCATGCGAGT+CGG | 0.635483 | 4_1:-42786788 | Msa0548600:CDS |
| TACTCGTTCAATGTCTGAGG+AGG | 0.637939 | 4_1:-42787975 | Msa0548600:CDS |
| CATATGCCAAGCTAAGGGTA+CGG | 0.637950 | 4_1:+42786670 | None:intergenic |
| AGAAGAGGATGTCGAACCGG+TGG | 0.644248 | 4_1:+42787717 | None:intergenic |
| TCTATAGCATTTGCAACAGG+AGG | 0.645431 | 4_1:-42788218 | Msa0548600:CDS |
| CGTGAACTCGTAATTCAGCA+TGG | 0.652635 | 4_1:+42788249 | None:intergenic |
| GCTTGGACGAAGTTCAGAGG+GGG | 0.665381 | 4_1:-42787395 | Msa0548600:CDS |
| TGTATGCAAATTTAAGATGG+GGG | 0.673083 | 4_1:-42786821 | Msa0548600:CDS |
| TGCTTGGACGAAGTTCAGAG+GGG | 0.707377 | 4_1:-42787396 | Msa0548600:CDS |
| CTTGGACGAAGTTCAGAGGG+GGG | 0.711037 | 4_1:-42787394 | Msa0548600:CDS |
| GTTGCAAATGCTATAGATGG+TGG | 0.721197 | 4_1:+42788224 | None:intergenic |
| AGCATGGCCAAGTAACCCAG+AGG | 0.745020 | 4_1:+42788265 | None:intergenic |
| ATTATTCTGATATGGCTGTG+AGG | 0.757301 | 4_1:-42786744 | Msa0548600:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAATCAATTTC+AGG | + | chr4_1:42787022-42787041 | None:intergenic | 10.0% |
| !!! | CAAATTTTATAAATTAATCA+AGG | + | chr4_1:42790609-42790628 | None:intergenic | 10.0% |
| !!! | ATTTTCTTCAAAAATGAAAA+TGG | - | chr4_1:42788181-42788200 | Msa0548600:CDS | 15.0% |
| !! | AAAAATAATATATCATCTGA+GGG | + | chr4_1:42789218-42789237 | None:intergenic | 15.0% |
| !! | AAAAAATAATATATCATCTG+AGG | + | chr4_1:42789219-42789238 | None:intergenic | 15.0% |
| !!! | TCAGATGATATATTATTTTT+TGG | - | chr4_1:42789218-42789237 | Msa0548600:intron | 15.0% |
| !! | AAATGTATATATGAACAAAA+AGG | + | chr4_1:42789624-42789643 | None:intergenic | 15.0% |
| !! | TACATTTATTTATATAACTC+AGG | + | chr4_1:42790972-42790991 | None:intergenic | 15.0% |
| !!! | AATGTATATATTTTTGGAAT+TGG | - | chr4_1:42790986-42791005 | Msa0548600:intron | 15.0% |
| !! | TCTATTTATTAAAGTAATGA+AGG | - | chr4_1:42791050-42791069 | Msa0548600:five_prime_UTR | 15.0% |
| !! | CTATTTATTAAAGTAATGAA+GGG | - | chr4_1:42791051-42791070 | Msa0548600:five_prime_UTR | 15.0% |
| !!! | TTATTTTTCTCCCTTAATAT+TGG | - | chr4_1:42786918-42786937 | Msa0548600:intron | 20.0% |
| !! | ATATAATCTTCAAAGATAGA+CGG | - | chr4_1:42787092-42787111 | Msa0548600:intron | 20.0% |
| !! | ATATCATTTCTCTAGATATA+CGG | + | chr4_1:42787643-42787662 | None:intergenic | 20.0% |
| !!! | CTTTTCTATAAATAGACAAT+TGG | + | chr4_1:42788133-42788152 | None:intergenic | 20.0% |
| !! | TATAATCAGTTCAATAACTT+TGG | - | chr4_1:42788374-42788393 | Msa0548600:intron | 20.0% |
| !!! | TACGCTTATCAAAATAATTT+TGG | + | chr4_1:42788419-42788438 | None:intergenic | 20.0% |
| !! | ATCCTTGTGTAATAAATTAA+AGG | - | chr4_1:42788438-42788457 | Msa0548600:intron | 20.0% |
| !! | AAAATAATATATCATCTGAG+GGG | + | chr4_1:42789217-42789236 | None:intergenic | 20.0% |
| !! | TTATGTTAACTTATTTACCA+TGG | + | chr4_1:42789918-42789937 | None:intergenic | 20.0% |
| !! | AAAGAATTATTTAGCACTAA+TGG | - | chr4_1:42790387-42790406 | Msa0548600:intron | 20.0% |
| ! | TACTTACACGAAAATAAGAA+TGG | + | chr4_1:42786662-42786681 | None:intergenic | 25.0% |
| ! | AAGCTAATTTAACTACTCTT+TGG | + | chr4_1:42786784-42786803 | None:intergenic | 25.0% |
| ! | CATATATAAATGCACTATCT+TGG | - | chr4_1:42786819-42786838 | Msa0548600:CDS | 25.0% |
| !!! | TTATGTTGTGGTTTTGATTT+TGG | - | chr4_1:42786886-42786905 | Msa0548600:intron | 25.0% |
| ! | AACACAATCACCAATATTAA+GGG | + | chr4_1:42786931-42786950 | None:intergenic | 25.0% |
| ! | AAACACAATCACCAATATTA+AGG | + | chr4_1:42786932-42786951 | None:intergenic | 25.0% |
| ! | CCTGAAAAGTAAATAGAAAT+AGG | + | chr4_1:42786957-42786976 | None:intergenic | 25.0% |
| !!! | CCTATTTCTATTTACTTTTC+AGG | - | chr4_1:42786954-42786973 | Msa0548600:intron | 25.0% |
| ! | GTTCAAAAGTTGTCATAAAA+TGG | + | chr4_1:42787674-42787693 | None:intergenic | 25.0% |
| ! | ACAACAATAGAAAGAGAAAA+AGG | + | chr4_1:42787741-42787760 | None:intergenic | 25.0% |
| !! | TCTTTTTCTCTCTTCATATT+GGG | + | chr4_1:42787766-42787785 | None:intergenic | 25.0% |
| !! | ATCTTTTTCTCTCTTCATAT+TGG | + | chr4_1:42787767-42787786 | None:intergenic | 25.0% |
| ! | AATATGAAGAGAGAAAAAGA+TGG | - | chr4_1:42787766-42787785 | Msa0548600:intron | 25.0% |
| ! | AACTACACTTAATAGCTATA+CGG | + | chr4_1:42787990-42788009 | None:intergenic | 25.0% |
| ! | GTTTAAGAAAAGATTCGTTT+AGG | - | chr4_1:42788064-42788083 | Msa0548600:intron | 25.0% |
| !! | ATGTTAAAGTTTTGCAACTT+CGG | - | chr4_1:42788228-42788247 | Msa0548600:CDS | 25.0% |
| ! | GAACTGATTATATCCATTTA+AGG | + | chr4_1:42788366-42788385 | None:intergenic | 25.0% |
| !! | CACCTTTAATTTATTACACA+AGG | + | chr4_1:42788443-42788462 | None:intergenic | 25.0% |
| !!! | GTTGTGTTGTTATCAATTTT+CGG | - | chr4_1:42788475-42788494 | Msa0548600:intron | 25.0% |
| ! | AATAAGTAATCATACCATTG+AGG | + | chr4_1:42788579-42788598 | None:intergenic | 25.0% |
| !! | TATGAAGCAATAAAGCATTA+GGG | + | chr4_1:42789119-42789138 | None:intergenic | 25.0% |
| !! | ATATGAAGCAATAAAGCATT+AGG | + | chr4_1:42789120-42789139 | None:intergenic | 25.0% |
| ! | TCATATATGTAGAATCTCAA+TGG | - | chr4_1:42789134-42789153 | Msa0548600:CDS | 25.0% |
| ! | ATTTAATGTGTATATGCTAC+TGG | - | chr4_1:42789257-42789276 | Msa0548600:intron | 25.0% |
| ! | TACCTATCTCATTAAAATCT+CGG | + | chr4_1:42789527-42789546 | None:intergenic | 25.0% |
| !!! | AACAAAAAGGCATTTTCTTT+TGG | + | chr4_1:42789611-42789630 | None:intergenic | 25.0% |
| ! | GTAACTTTATGTTTGTGAAT+AGG | + | chr4_1:42789745-42789764 | None:intergenic | 25.0% |
| ! | ATTCACAAACATAAAGTTAC+TGG | - | chr4_1:42789745-42789764 | Msa0548600:intron | 25.0% |
| ! | AATGAATCATAAGTTGTGAT+AGG | - | chr4_1:42789813-42789832 | Msa0548600:intron | 25.0% |
| ! | TTTGTCTATATTAACAGAGA+TGG | - | chr4_1:42789938-42789957 | Msa0548600:intron | 25.0% |
| ! | GTTTAATCTGATTCAAACAT+TGG | + | chr4_1:42790202-42790221 | None:intergenic | 25.0% |
| ! | CAGATTAAACAAGATTTCAA+AGG | - | chr4_1:42790212-42790231 | Msa0548600:intron | 25.0% |
| ! | AAATGATGAATGCAAAAGAT+AGG | + | chr4_1:42790355-42790374 | None:intergenic | 25.0% |
| !! | TATTCCAATTTTCAACAAAC+CGG | + | chr4_1:42790497-42790516 | None:intergenic | 25.0% |
| ! | ACATTTGACATAAAAAATGG+TGG | + | chr4_1:42790571-42790590 | None:intergenic | 25.0% |
| ! | CTGACATTTGACATAAAAAA+TGG | + | chr4_1:42790574-42790593 | None:intergenic | 25.0% |
| ! | ATGTTATATTGCTAAAGTTG+AGG | + | chr4_1:42790691-42790710 | None:intergenic | 25.0% |
| ! | TGTGTAGTATTATTCTGATA+TGG | - | chr4_1:42790928-42790947 | Msa0548600:intron | 25.0% |
| TACGAAAACAGTGACAATTA+AGG | + | chr4_1:42786707-42786726 | None:intergenic | 30.0% | |
| ! | TTTACAAGAACCGTTTTGTA+AGG | - | chr4_1:42787177-42787196 | Msa0548600:intron | 30.0% |
| ! | TTACAAGAACCGTTTTGTAA+GGG | - | chr4_1:42787178-42787197 | Msa0548600:intron | 30.0% |
| TTAACTCTACCCTTACAAAA+CGG | + | chr4_1:42787190-42787209 | None:intergenic | 30.0% | |
| GAAGCCAATTAACTATTTGT+AGG | - | chr4_1:42787415-42787434 | Msa0548600:CDS | 30.0% | |
| AACTACACTTCATAGCTATA+CGG | + | chr4_1:42787461-42787480 | None:intergenic | 30.0% | |
| GAAGCCAATTATCTATTTGT+AGG | - | chr4_1:42787597-42787616 | Msa0548600:intron | 30.0% | |
| GAAGCCAATTATCTATTTGT+AGG | - | chr4_1:42787597-42787616 | Msa0548600:intron | 30.0% | |
| CCAATTATCTATTTGTAGGT+CGG | - | chr4_1:42787948-42787967 | Msa0548600:CDS | 30.0% | |
| !! | TGCTTTGTTTGTTCCTTAAA+TGG | - | chr4_1:42788350-42788369 | Msa0548600:CDS | 30.0% |
| ! | ATTAAAGGTGTAATACTTGC+AGG | - | chr4_1:42788453-42788472 | Msa0548600:intron | 30.0% |
| ATAAGTTCTCCAAAACAGTT+TGG | + | chr4_1:42788846-42788865 | None:intergenic | 30.0% | |
| !!! | AAACTGTTTTGGAGAACTTA+TGG | - | chr4_1:42788845-42788864 | Msa0548600:intron | 30.0% |
| TTTGTTTCCATAAACTTTCC+AGG | - | chr4_1:42788903-42788922 | Msa0548600:intron | 30.0% | |
| AAGTTATCCTGGAAAGTTTA+TGG | + | chr4_1:42788913-42788932 | None:intergenic | 30.0% | |
| ACCCTTTGCATCTAATAAAA+GGG | - | chr4_1:42789027-42789046 | Msa0548600:intron | 30.0% | |
| ! | ACCCTTTTATTAGATGCAAA+GGG | + | chr4_1:42789031-42789050 | None:intergenic | 30.0% |
| !! | ATAAAAGGGTGCTTAGATAT+AGG | - | chr4_1:42789041-42789060 | Msa0548600:intron | 30.0% |
| !! | TAAAAGGGTGCTTAGATATA+GGG | - | chr4_1:42789042-42789061 | Msa0548600:intron | 30.0% |
| TGAAAAGGATAAAAGGTCAA+TGG | + | chr4_1:42789294-42789313 | None:intergenic | 30.0% | |
| ATAGGTATTATGCTTCTGAA+TGG | - | chr4_1:42789540-42789559 | Msa0548600:intron | 30.0% | |
| !!! | TTGCTTTTTGCTTCATTTTG+TGG | - | chr4_1:42789648-42789667 | Msa0548600:intron | 30.0% |
| TTTATGTTTGTGAATAGGCA+AGG | + | chr4_1:42789740-42789759 | None:intergenic | 30.0% | |
| CTATCACAACTTACTCTATT+GGG | + | chr4_1:42789771-42789790 | None:intergenic | 30.0% | |
| ACTATCACAACTTACTCTAT+TGG | + | chr4_1:42789772-42789791 | None:intergenic | 30.0% | |
| GTTATCTAAACCTTTGCTTA+TGG | - | chr4_1:42790013-42790032 | Msa0548600:intron | 30.0% | |
| ACCTTTGCTTATGGTTTATT+TGG | - | chr4_1:42790022-42790041 | Msa0548600:intron | 30.0% | |
| ACCAAATAAACCATAAGCAA+AGG | + | chr4_1:42790026-42790045 | None:intergenic | 30.0% | |
| !!! | GCATCTATTGTTTTTTGCTT+CGG | - | chr4_1:42790099-42790118 | Msa0548600:intron | 30.0% |
| !!! | CTTTTTTATTTCCCTGGAAT+AGG | - | chr4_1:42790154-42790173 | Msa0548600:intron | 30.0% |
| TAAAATCTCTTCCTATTCCA+GGG | + | chr4_1:42790168-42790187 | None:intergenic | 30.0% | |
| TCCTGTATGCAAATTTAAGA+TGG | - | chr4_1:42790856-42790875 | Msa0548600:intron | 30.0% | |
| ! | CCTGTATGCAAATTTAAGAT+GGG | - | chr4_1:42790857-42790876 | Msa0548600:intron | 30.0% |
| ! | CTGTATGCAAATTTAAGATG+GGG | - | chr4_1:42790858-42790877 | Msa0548600:intron | 30.0% |
| ! | TGTATGCAAATTTAAGATGG+GGG | - | chr4_1:42790859-42790878 | Msa0548600:intron | 30.0% |
| ATATTCATATGCCAAGCTAA+GGG | + | chr4_1:42791018-42791037 | None:intergenic | 30.0% | |
| AATATTCATATGCCAAGCTA+AGG | + | chr4_1:42791019-42791038 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCGTAACTGTACA+AGG | - | chr4_1:42786715-42786734 | Msa0548600:three_prime_UTR | 35.0% |
| TCACATGAAGAGTTATGTTG+TGG | - | chr4_1:42786874-42786893 | Msa0548600:CDS | 35.0% | |
| !!! | TGTTGTGGTTTTGATTTTGG+TGG | - | chr4_1:42786889-42786908 | Msa0548600:intron | 35.0% |
| ! | TCCAGGCTTTTCATCTAATA+CGG | + | chr4_1:42787126-42787145 | None:intergenic | 35.0% |
| CCAATTGTAAACACAATTCC+AGG | + | chr4_1:42787143-42787162 | None:intergenic | 35.0% | |
| CCTGGAATTGTGTTTACAAT+TGG | - | chr4_1:42787140-42787159 | Msa0548600:intron | 35.0% | |
| GGAATTGTGTTTACAATTGG+TGG | - | chr4_1:42787143-42787162 | Msa0548600:intron | 35.0% | |
| CTGATGTCGTCTTAGAATTT+GGG | + | chr4_1:42787219-42787238 | None:intergenic | 35.0% | |
| TCTGATGTCGTCTTAGAATT+TGG | + | chr4_1:42787220-42787239 | None:intergenic | 35.0% | |
| TTAGTCATCACCTTATAAGC+CGG | - | chr4_1:42787328-42787347 | Msa0548600:intron | 35.0% | |
| CGAATCTATTCTTACAACAC+CGG | + | chr4_1:42787350-42787369 | None:intergenic | 35.0% | |
| CCAATTAACTATTTGTAGGC+CGG | - | chr4_1:42787419-42787438 | Msa0548600:CDS | 35.0% | |
| CGGATCTATTCTTACAAAAC+CGG | + | chr4_1:42787441-42787460 | None:intergenic | 35.0% | |
| CGAATCTATTCTTACAACAC+CGG | + | chr4_1:42787350-42787369 | None:intergenic | 35.0% | |
| CCAATTATCTATTTGTAGGC+CGG | - | chr4_1:42787601-42787620 | Msa0548600:intron | 35.0% | |
| TCACAAGAGTTGTCACAAAA+TGG | - | chr4_1:42787792-42787811 | Msa0548600:intron | 35.0% | |
| CCAATTACCCATTTGTAAGA+CGG | - | chr4_1:42787857-42787876 | Msa0548600:intron | 35.0% | |
| TACAACACCGTCTTACAAAT+GGG | + | chr4_1:42787867-42787886 | None:intergenic | 35.0% | |
| TTACAACACCGTCTTACAAA+TGG | + | chr4_1:42787868-42787887 | None:intergenic | 35.0% | |
| CCGACCTACAAATAGATAAT+TGG | + | chr4_1:42787951-42787970 | None:intergenic | 35.0% | |
| CCAATTATCCATTTGTAAGC+CGG | - | chr4_1:42788039-42788058 | Msa0548600:intron | 35.0% | |
| ! | CGAATCTTTTCTTAAACCAC+CGG | + | chr4_1:42788061-42788080 | None:intergenic | 35.0% |
| !! | TCATGAGTTTTGCTTTTCGA+GGG | - | chr4_1:42788504-42788523 | Msa0548600:intron | 35.0% |
| AGTAGGGGAGATATTGAAAA+CGG | - | chr4_1:42788527-42788546 | Msa0548600:intron | 35.0% | |
| GAAAAACCAGACAATTGCTA+TGG | + | chr4_1:42788756-42788775 | None:intergenic | 35.0% | |
| !!! | TGTCTGGTTTTTCTTTTTGC+CGG | - | chr4_1:42788763-42788782 | Msa0548600:intron | 35.0% |
| TTGGCAAGTGTTTATGTTAG+TGG | + | chr4_1:42788827-42788846 | None:intergenic | 35.0% | |
| ! | AAACACTTGCCAAACTGTTT+TGG | - | chr4_1:42788834-42788853 | Msa0548600:intron | 35.0% |
| ! | ACTGTTTTCACAAGTTATCC+TGG | + | chr4_1:42788924-42788943 | None:intergenic | 35.0% |
| CACCCTTTGCATCTAATAAA+AGG | - | chr4_1:42789026-42789045 | Msa0548600:intron | 35.0% | |
| ! | CACCCTTTTATTAGATGCAA+AGG | + | chr4_1:42789032-42789051 | None:intergenic | 35.0% |
| TTATCTACATCTTCAAGCAC+AGG | - | chr4_1:42789371-42789390 | Msa0548600:intron | 35.0% | |
| !! | GACCGAGATTTTAATGAGAT+AGG | - | chr4_1:42789522-42789541 | Msa0548600:intron | 35.0% |
| TTGTGATAGGTTCTTGTAGA+AGG | - | chr4_1:42789826-42789845 | Msa0548600:intron | 35.0% | |
| TAGAAGGTAAAGTGGTTAAC+AGG | - | chr4_1:42789842-42789861 | Msa0548600:intron | 35.0% | |
| ! | TTTAATGAAGTGCTAAGCCA+TGG | - | chr4_1:42789898-42789917 | Msa0548600:intron | 35.0% |
| CGTAACTCAAACAACTTAGT+GGG | + | chr4_1:42790049-42790068 | None:intergenic | 35.0% | |
| TCGTAACTCAAACAACTTAG+TGG | + | chr4_1:42790050-42790069 | None:intergenic | 35.0% | |
| ! | CTAAGTTGTTTGAGTTACGA+AGG | - | chr4_1:42790050-42790069 | Msa0548600:intron | 35.0% |
| CCAGGGAAATAAAAAAGTTG+TGG | + | chr4_1:42790151-42790170 | None:intergenic | 35.0% | |
| !!! | CCACAACTTTTTTATTTCCC+TGG | - | chr4_1:42790148-42790167 | Msa0548600:intron | 35.0% |
| CTAAAATCTCTTCCTATTCC+AGG | + | chr4_1:42790169-42790188 | None:intergenic | 35.0% | |
| ACAAGATTTCAAAGGAGAAG+AGG | - | chr4_1:42790220-42790239 | Msa0548600:intron | 35.0% | |
| CAAGATTTCAAAGGAGAAGA+GGG | - | chr4_1:42790221-42790240 | Msa0548600:intron | 35.0% | |
| TTGAGTTCGTATTCTGAATC+CGG | - | chr4_1:42790475-42790494 | Msa0548600:intron | 35.0% | |
| !! | GAATCCGGTTTGTTGAAAAT+TGG | - | chr4_1:42790490-42790509 | Msa0548600:intron | 35.0% |
| ACATTACTCAAAGCTACAAG+TGG | - | chr4_1:42790707-42790726 | Msa0548600:intron | 35.0% | |
| CCCATCTTAAATTTGCATAC+AGG | + | chr4_1:42790860-42790879 | None:intergenic | 35.0% | |
| ATTATTCTGATATGGCTGTG+AGG | - | chr4_1:42790936-42790955 | Msa0548600:intron | 35.0% | |
| ! | CCAGGCTTTTCATCTAATAC+GGG | + | chr4_1:42787125-42787144 | None:intergenic | 40.0% |
| !! | TGGCATAATGGACCATTGAT+AGG | + | chr4_1:42787244-42787263 | None:intergenic | 40.0% |
| !! | TCTTACAACACCGGCTTATA+AGG | + | chr4_1:42787341-42787360 | None:intergenic | 40.0% |
| CCGGCCTACAAATAGTTAAT+TGG | + | chr4_1:42787422-42787441 | None:intergenic | 40.0% | |
| CCAATTATCCATTTGTTCGC+CGG | - | chr4_1:42787510-42787529 | Msa0548600:intron | 40.0% | |
| CCGGCCTACAAATAGATAAT+TGG | + | chr4_1:42787604-42787623 | None:intergenic | 40.0% | |
| CGGATCTATTCTTGCAAAAC+CGG | + | chr4_1:42787623-42787642 | None:intergenic | 40.0% | |
| CCGTCTTACAAATGGGTAAT+TGG | + | chr4_1:42787860-42787879 | None:intergenic | 40.0% | |
| CCGGCTTACAAATGGATAAT+TGG | + | chr4_1:42788042-42788061 | None:intergenic | 40.0% | |
| ATTATCCATTTGTAAGCCGG+TGG | - | chr4_1:42788042-42788061 | Msa0548600:intron | 40.0% | |
| !! | TTAAACCACCGGCTTACAAA+TGG | + | chr4_1:42788050-42788069 | None:intergenic | 40.0% |
| TAGTCAAGACCATGTGCTAA+AGG | - | chr4_1:42788154-42788173 | Msa0548600:intron | 40.0% | |
| AAAATCCGACCTTTAGCACA+TGG | + | chr4_1:42788166-42788185 | None:intergenic | 40.0% | |
| TTGCGTGTCTGAAAATCTGT+AGG | - | chr4_1:42788277-42788296 | Msa0548600:CDS | 40.0% | |
| TGCGTGTCTGAAAATCTGTA+GGG | - | chr4_1:42788278-42788297 | Msa0548600:CDS | 40.0% | |
| !! | GTCATGAGTTTTGCTTTTCG+AGG | - | chr4_1:42788503-42788522 | Msa0548600:intron | 40.0% |
| !! | TTTTGCTTTTCGAGGGAGTA+GGG | - | chr4_1:42788511-42788530 | Msa0548600:intron | 40.0% |
| ! | AGTATTATCCAGCGCTGAAA+AGG | + | chr4_1:42789309-42789328 | None:intergenic | 40.0% |
| AATACTGTCGGTCTTTGTGA+TGG | - | chr4_1:42789323-42789342 | Msa0548600:intron | 40.0% | |
| GTTGCAAATGCTATAGATGG+TGG | + | chr4_1:42789459-42789478 | None:intergenic | 40.0% | |
| CCTGTTGCAAATGCTATAGA+TGG | + | chr4_1:42789462-42789481 | None:intergenic | 40.0% | |
| CCATCTATAGCATTTGCAAC+AGG | - | chr4_1:42789459-42789478 | Msa0548600:intron | 40.0% | |
| TCTATAGCATTTGCAACAGG+AGG | - | chr4_1:42789462-42789481 | Msa0548600:intron | 40.0% | |
| ! | ATGCTTCTGAATGGCACTTT+TGG | - | chr4_1:42789549-42789568 | Msa0548600:intron | 40.0% |
| TGGCAGATTATGACACTTTG+AGG | - | chr4_1:42789668-42789687 | Msa0548600:intron | 40.0% | |
| GGCAGATTATGACACTTTGA+GGG | - | chr4_1:42789669-42789688 | Msa0548600:intron | 40.0% | |
| !! | ACTTTGAGGGTTCTTGCTTT+TGG | - | chr4_1:42789682-42789701 | Msa0548600:intron | 40.0% |
| GGTTCTTGTAGAAGGTAAAG+TGG | - | chr4_1:42789834-42789853 | Msa0548600:intron | 40.0% | |
| AAAAACGCAGACACGCAAAA+TGG | + | chr4_1:42789879-42789898 | None:intergenic | 40.0% | |
| AGTGCCAATGATCAAGAAGA+TGG | - | chr4_1:42790245-42790264 | Msa0548600:intron | 40.0% | |
| GTGCCAATGATCAAGAAGAT+GGG | - | chr4_1:42790246-42790265 | Msa0548600:intron | 40.0% | |
| CAACCCATCTTCTTGATCAT+TGG | + | chr4_1:42790252-42790271 | None:intergenic | 40.0% | |
| GGAGATTAGTGCAGTTAATG+CGG | - | chr4_1:42790408-42790427 | Msa0548600:intron | 40.0% | |
| TACTCAAAGCTACAAGTGGT+TGG | - | chr4_1:42790711-42790730 | Msa0548600:intron | 40.0% | |
| ! | ATGCAAATTTAAGATGGGGG+CGG | - | chr4_1:42790862-42790881 | Msa0548600:intron | 40.0% |
| ATGTAACAATGCATGCGAGT+CGG | - | chr4_1:42790892-42790911 | Msa0548600:intron | 40.0% | |
| GAATGGAGTGTAGCTGAGAA+TGG | + | chr4_1:42786645-42786664 | None:intergenic | 45.0% | |
| CCCGTATTAGATGAAAAGCC+TGG | - | chr4_1:42787122-42787141 | Msa0548600:intron | 45.0% | |
| ACGACATCAGAGCCTATCAA+TGG | - | chr4_1:42787229-42787248 | Msa0548600:intron | 45.0% | |
| !! | AGCAAGTGGCATTGGCATAA+TGG | + | chr4_1:42787256-42787275 | None:intergenic | 45.0% |
| ATGTCTGATCCTATGCGTGA+AGG | - | chr4_1:42787302-42787321 | Msa0548600:intron | 45.0% | |
| TGTCTGATCCTATGCGTGAA+GGG | - | chr4_1:42787303-42787322 | Msa0548600:intron | 45.0% | |
| CCGGCGAACAAATGGATAAT+TGG | + | chr4_1:42787513-42787532 | None:intergenic | 45.0% | |
| TTACAACACCGGCGAACAAA+TGG | + | chr4_1:42787521-42787540 | None:intergenic | 45.0% | |
| CAAGACCATGTGCTAAAGGT+CGG | - | chr4_1:42788158-42788177 | Msa0548600:intron | 45.0% | |
| !! | GTTTTGCTTTTCGAGGGAGT+AGG | - | chr4_1:42788510-42788529 | Msa0548600:intron | 45.0% |
| !! | TTTGCTTTTCGAGGGAGTAG+GGG | - | chr4_1:42788512-42788531 | Msa0548600:intron | 45.0% |
| TGTTCCTGAGAGAACCTCAA+TGG | - | chr4_1:42788562-42788581 | Msa0548600:intron | 45.0% | |
| CATACCATTGAGGTTCTCTC+AGG | + | chr4_1:42788569-42788588 | None:intergenic | 45.0% | |
| !!! | GCTGCTCTTTTTTACCTCAG+CGG | - | chr4_1:42788710-42788729 | Msa0548600:intron | 45.0% |
| !!! | CTGCTCTTTTTTACCTCAGC+GGG | - | chr4_1:42788711-42788730 | Msa0548600:intron | 45.0% |
| ACCAGACAATTGCTATGGAC+TGG | + | chr4_1:42788751-42788770 | None:intergenic | 45.0% | |
| ! | TTTTCTTTTTGCCGGTGAGC+AGG | - | chr4_1:42788771-42788790 | Msa0548600:intron | 45.0% |
| ! | TTTCTTTTTGCCGGTGAGCA+GGG | - | chr4_1:42788772-42788791 | Msa0548600:intron | 45.0% |
| ! | AGGGTGCTTAGATATAGGGA+CGG | - | chr4_1:42789046-42789065 | Msa0548600:intron | 45.0% |
| TGCTTAGATATAGGGACGGA+GGG | - | chr4_1:42789050-42789069 | Msa0548600:intron | 45.0% | |
| ! | CCAGCGCTGAAAAGGATAAA+AGG | + | chr4_1:42789301-42789320 | None:intergenic | 45.0% |
| ! | CCTTTTATCCTTTTCAGCGC+TGG | - | chr4_1:42789298-42789317 | Msa0548600:intron | 45.0% |
| ! | TCAGCGCTGGATAATACTGT+CGG | - | chr4_1:42789311-42789330 | Msa0548600:intron | 45.0% |
| CGTGAACTCGTAATTCAGCA+TGG | + | chr4_1:42789434-42789453 | None:intergenic | 45.0% | |
| TGGTACTCGTTCAATGTCTG+AGG | - | chr4_1:42789702-42789721 | Msa0548600:intron | 45.0% | |
| TACTCGTTCAATGTCTGAGG+AGG | - | chr4_1:42789705-42789724 | Msa0548600:intron | 45.0% | |
| ATTAACAGAGATGGCTCCAC+CGG | - | chr4_1:42789947-42789966 | Msa0548600:intron | 45.0% | |
| TGAAGAAGAGGATGTCGAAC+CGG | + | chr4_1:42789969-42789988 | None:intergenic | 45.0% | |
| TTCGACATCCTCTTCTTCAG+AGG | - | chr4_1:42789970-42789989 | Msa0548600:intron | 45.0% | |
| GTTGACATGCGCTATATGCT+TGG | - | chr4_1:42790268-42790287 | Msa0548600:intron | 45.0% | |
| TATGCTTGGACGAAGTTCAG+AGG | - | chr4_1:42790282-42790301 | Msa0548600:intron | 45.0% | |
| ATGCTTGGACGAAGTTCAGA+GGG | - | chr4_1:42790283-42790302 | Msa0548600:intron | 45.0% | |
| CGTTAAACCTGATGCAAGCA+TGG | + | chr4_1:42790329-42790348 | None:intergenic | 45.0% | |
| GGTCAGCAAATTAGAGCTGT+TGG | - | chr4_1:42790429-42790448 | Msa0548600:intron | 45.0% | |
| CACTCAGTGAATGAAGTCGT+TGG | + | chr4_1:42790540-42790559 | None:intergenic | 45.0% | |
| ! | ATGCCAACTGCATCGATCAA+TGG | - | chr4_1:42790813-42790832 | Msa0548600:intron | 45.0% |
| ! | TGCAAATTTAAGATGGGGGC+GGG | - | chr4_1:42790863-42790882 | Msa0548600:intron | 45.0% |
| CATATGCCAAGCTAAGGGTA+CGG | + | chr4_1:42791013-42791032 | None:intergenic | 45.0% | |
| !! | ATTTATATATGAATATTTAA+TGG | + | chr4_1:42786810-42786829 | None:intergenic | 5.0% |
| !!! | TAAATAAATGTATATATTTT+TGG | - | chr4_1:42790980-42790999 | Msa0548600:intron | 5.0% |
| !! | TGCCAATGCCACTTGCTATG+AGG | - | chr4_1:42787259-42787278 | Msa0548600:intron | 50.0% |
| ! | CATCTAGAGCATGATCCGAG+TGG | + | chr4_1:42787285-42787304 | None:intergenic | 50.0% |
| GTCTGATCCTATGCGTGAAG+GGG | - | chr4_1:42787304-42787323 | Msa0548600:intron | 50.0% | |
| TCTGATCCTATGCGTGAAGG+GGG | - | chr4_1:42787305-42787324 | Msa0548600:intron | 50.0% | |
| GCCAGTCCATAGCAATTGTC+TGG | - | chr4_1:42788747-42788766 | Msa0548600:intron | 50.0% | |
| TCAATGTAGACCCTGCTCAC+CGG | + | chr4_1:42788785-42788804 | None:intergenic | 50.0% | |
| !! | GCAAAGGGTGCTTGCATACA+GGG | + | chr4_1:42789016-42789035 | None:intergenic | 50.0% |
| !! | TGCAAAGGGTGCTTGCATAC+AGG | + | chr4_1:42789017-42789036 | None:intergenic | 50.0% |
| GTGCTTAGATATAGGGACGG+AGG | - | chr4_1:42789049-42789068 | Msa0548600:intron | 50.0% | |
| TACATCTTCAAGCACAGGCC+AGG | - | chr4_1:42789376-42789395 | Msa0548600:intron | 50.0% | |
| ACATCTTCAAGCACAGGCCA+GGG | - | chr4_1:42789377-42789396 | Msa0548600:intron | 50.0% | |
| TGCAACAGGAGGAAGATTGC+AGG | - | chr4_1:42789473-42789492 | Msa0548600:intron | 50.0% | |
| TGCTTGGACGAAGTTCAGAG+GGG | - | chr4_1:42790284-42790303 | Msa0548600:intron | 50.0% | |
| ! | TAGCTTGCCATGCTTGCATC+AGG | - | chr4_1:42790319-42790338 | Msa0548600:intron | 50.0% |
| CGATGCAGTTGGCATGAAAC+TGG | + | chr4_1:42790808-42790827 | None:intergenic | 50.0% | |
| GAGCCATTGATCGATGCAGT+TGG | + | chr4_1:42790819-42790838 | None:intergenic | 50.0% | |
| ! | ACTGCATCGATCAATGGCTC+CGG | - | chr4_1:42790819-42790838 | Msa0548600:intron | 50.0% |
| ! | CAGGACATGTTCGTTTTCGC+CGG | + | chr4_1:42790841-42790860 | None:intergenic | 50.0% |
| ! | AATTTAAGATGGGGGCGGGA+TGG | - | chr4_1:42790867-42790886 | Msa0548600:intron | 50.0% |
| ATTGGACCGTACCCTTAGCT+TGG | - | chr4_1:42791004-42791023 | Msa0548600:intron | 50.0% | |
| GGCCTCATAGCAAGTGGCAT+TGG | + | chr4_1:42787264-42787283 | None:intergenic | 55.0% | |
| !! | CCACTTGCTATGAGGCCACT+CGG | - | chr4_1:42787267-42787286 | Msa0548600:intron | 55.0% |
| GACTAACCCCCTTCACGCAT+AGG | + | chr4_1:42787314-42787333 | None:intergenic | 55.0% | |
| !! | TTGCTATGGACTGGCCGAGA+TGG | + | chr4_1:42788742-42788761 | None:intergenic | 55.0% |
| TGCTTGCATACAGGGACGGA+GGG | + | chr4_1:42789008-42789027 | None:intergenic | 55.0% | |
| ! | AGGGTGCTTGCATACAGGGA+CGG | + | chr4_1:42789012-42789031 | None:intergenic | 55.0% |
| AGCATGGCCAAGTAACCCAG+AGG | + | chr4_1:42789418-42789437 | None:intergenic | 55.0% | |
| ! | CTCGGTCAAGAAGTGCAAGC+TGG | + | chr4_1:42789509-42789528 | None:intergenic | 55.0% |
| AGAAGAGGATGTCGAACCGG+TGG | + | chr4_1:42789966-42789985 | None:intergenic | 55.0% | |
| ! | CTCAGCTGCCTCTGAAGAAG+AGG | + | chr4_1:42789981-42790000 | None:intergenic | 55.0% |
| CTCTTCTTCAGAGGCAGCTG+AGG | - | chr4_1:42789979-42789998 | Msa0548600:intron | 55.0% | |
| GCTTGGACGAAGTTCAGAGG+GGG | - | chr4_1:42790285-42790304 | Msa0548600:intron | 55.0% | |
| CTTGGACGAAGTTCAGAGGG+GGG | - | chr4_1:42790286-42790305 | Msa0548600:intron | 55.0% | |
| CCGAGTGGCCTCATAGCAAG+TGG | + | chr4_1:42787270-42787289 | None:intergenic | 60.0% | |
| ! | CTCAGCGGGTTCGTCCATCT+CGG | - | chr4_1:42788725-42788744 | Msa0548600:intron | 60.0% |
| GTGCTTGCATACAGGGACGG+AGG | + | chr4_1:42789009-42789028 | None:intergenic | 60.0% | |
| CTCATGCTGCAGCAGCCTCT+GGG | - | chr4_1:42789400-42789419 | Msa0548600:intron | 60.0% | |
| GCAGCAGCCTCTGGGTTACT+TGG | - | chr4_1:42789408-42789427 | Msa0548600:intron | 60.0% | |
| CGAGATGGACGAACCCGCTG+AGG | + | chr4_1:42788727-42788746 | None:intergenic | 65.0% | |
| GCTCATGCTGCAGCAGCCTC+TGG | - | chr4_1:42789399-42789418 | Msa0548600:intron | 65.0% | |
| GGCTGCTGCAGCATGAGCCC+TGG | + | chr4_1:42789397-42789416 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 42786615 | 42791087 | 42786615 | ID=Msa0548600;Name=Msa0548600 |
| chr4_1 | mRNA | 42786615 | 42791087 | 42786615 | ID=Msa0548600-mRNA-1;Parent=Msa0548600;Name=Msa0548600-mRNA-1;_AED=0.08;_eAED=0.08;_QI=91|0.66|0.71|1|0.83|0.71|7|153|248 |
| chr4_1 | exon | 42786615 | 42786893 | 42786615 | ID=Msa0548600-mRNA-1:exon:11080;Parent=Msa0548600-mRNA-1 |
| chr4_1 | exon | 42787362 | 42787526 | 42787362 | ID=Msa0548600-mRNA-1:exon:11079;Parent=Msa0548600-mRNA-1 |
| chr4_1 | exon | 42787702 | 42787747 | 42787702 | ID=Msa0548600-mRNA-1:exon:11078;Parent=Msa0548600-mRNA-1 |
| chr4_1 | exon | 42787926 | 42788028 | 42787926 | ID=Msa0548600-mRNA-1:exon:11077;Parent=Msa0548600-mRNA-1 |
| chr4_1 | exon | 42788159 | 42788387 | 42788159 | ID=Msa0548600-mRNA-1:exon:11076;Parent=Msa0548600-mRNA-1 |
| chr4_1 | exon | 42789119 | 42789227 | 42789119 | ID=Msa0548600-mRNA-1:exon:11075;Parent=Msa0548600-mRNA-1 |
| chr4_1 | exon | 42791028 | 42791087 | 42791028 | ID=Msa0548600-mRNA-1:exon:11074;Parent=Msa0548600-mRNA-1 |
| chr4_1 | five_prime_UTR | 42791028 | 42791087 | 42791028 | ID=Msa0548600-mRNA-1:five_prime_utr;Parent=Msa0548600-mRNA-1 |
| chr4_1 | five_prime_UTR | 42789197 | 42789227 | 42789197 | ID=Msa0548600-mRNA-1:five_prime_utr;Parent=Msa0548600-mRNA-1 |
| chr4_1 | CDS | 42789119 | 42789196 | 42789119 | ID=Msa0548600-mRNA-1:cds;Parent=Msa0548600-mRNA-1 |
| chr4_1 | CDS | 42788159 | 42788387 | 42788159 | ID=Msa0548600-mRNA-1:cds;Parent=Msa0548600-mRNA-1 |
| chr4_1 | CDS | 42787926 | 42788028 | 42787926 | ID=Msa0548600-mRNA-1:cds;Parent=Msa0548600-mRNA-1 |
| chr4_1 | CDS | 42787702 | 42787747 | 42787702 | ID=Msa0548600-mRNA-1:cds;Parent=Msa0548600-mRNA-1 |
| chr4_1 | CDS | 42787362 | 42787526 | 42787362 | ID=Msa0548600-mRNA-1:cds;Parent=Msa0548600-mRNA-1 |
| chr4_1 | CDS | 42786768 | 42786893 | 42786768 | ID=Msa0548600-mRNA-1:cds;Parent=Msa0548600-mRNA-1 |
| chr4_1 | three_prime_UTR | 42786615 | 42786767 | 42786615 | ID=Msa0548600-mRNA-1:three_prime_utr;Parent=Msa0548600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
