Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249350 | XP_013463827.1 | 98.870 | 177 | 1 | 1 | 1 | 176 | 1 | 177 | 2.62e-124 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249350 | A0A072V7U8 | 98.870 | 177 | 1 | 1 | 1 | 176 | 1 | 177 | 1.25e-124 | 357 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0249350 | Msa0287840 | 0.817792 | 2.744214e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249350 | MtrunA17_Chr2g0304821 | 98.870 | 177 | 1 | 1 | 1 | 176 | 1 | 177 | 2.41e-128 | 357 |
| Msa0249350 | MtrunA17_Chr4g0025231 | 46.512 | 172 | 86 | 2 | 8 | 174 | 6 | 176 | 5.55e-47 | 152 |
| Msa0249350 | MtrunA17_Chr2g0288981 | 46.875 | 160 | 79 | 3 | 18 | 174 | 11 | 167 | 2.49e-39 | 132 |
| Msa0249350 | MtrunA17_Chr7g0273171 | 38.037 | 163 | 82 | 5 | 13 | 174 | 17 | 161 | 1.38e-21 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249350 | AT2G24290.1 | 68.712 | 163 | 49 | 1 | 16 | 176 | 11 | 173 | 3.49e-83 | 243 |
| Msa0249350 | AT4G30996.1 | 69.753 | 162 | 48 | 1 | 16 | 176 | 11 | 172 | 8.58e-76 | 224 |
| Msa0249350 | AT2G32580.1 | 41.212 | 165 | 94 | 2 | 10 | 174 | 5 | 166 | 2.45e-41 | 137 |
| Msa0249350 | AT1G05070.1 | 44.720 | 161 | 87 | 2 | 13 | 173 | 8 | 166 | 1.54e-40 | 135 |
| Msa0249350 | AT4G04360.1 | 41.401 | 157 | 89 | 3 | 18 | 174 | 14 | 167 | 2.32e-31 | 112 |
| Msa0249350 | AT2G32580.2 | 48.000 | 100 | 52 | 0 | 74 | 173 | 4 | 103 | 1.79e-27 | 100 |
Find 65 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGATATCAGCTTTAA+TGG | 0.220257 | 2_2:+36045602 | Msa0249350:CDS |
| TGTGTGGTCCTGCTCTTTAC+TGG | 0.278230 | 2_2:+36045625 | Msa0249350:CDS |
| TCCATCTCCTCCCTTAGTTC+CGG | 0.283672 | 2_2:-36047539 | None:intergenic |
| AGGAGGACAAGAAGAGAGTT+TGG | 0.301376 | 2_2:-36045676 | None:intergenic |
| CCATCTCCTCCCTTAGTTCC+GGG | 0.315926 | 2_2:-36047538 | None:intergenic |
| CAAAGTTATCTTTCTCTCCT+TGG | 0.380854 | 2_2:-36047756 | None:intergenic |
| GCGAGTTGAAAGAGGGATAG+AGG | 0.394379 | 2_2:-36045720 | None:intergenic |
| CACATTTGCCTGCTTCTCTC+TGG | 0.395639 | 2_2:-36047679 | None:intergenic |
| CTTTCTCTCCTTGGTTAGCA+TGG | 0.395830 | 2_2:-36047747 | None:intergenic |
| CTCTTGTAGCTTTAGCTCCT+CGG | 0.397219 | 2_2:-36047585 | None:intergenic |
| ATCATGGTTAAGATGGTGTT+TGG | 0.408664 | 2_2:+36045572 | Msa0249350:CDS |
| GTGCGAGCAGGCAAGAGAAC+AGG | 0.417931 | 2_2:+36047718 | Msa0249350:CDS |
| CTCCTTGGTTAGCATGGCTT+CGG | 0.426309 | 2_2:-36047741 | None:intergenic |
| TCACAAACAAACACAGTAGA+AGG | 0.427297 | 2_2:-36047928 | None:intergenic |
| GGGGTAACGACCCGGAACTA+AGG | 0.440973 | 2_2:+36047528 | Msa0249350:CDS |
| TGAAAGAGGGATAGAGGAGG+AGG | 0.448986 | 2_2:-36045714 | None:intergenic |
| CTAACCTGAGACAGAGAGAT+TGG | 0.459936 | 2_2:-36045856 | None:intergenic |
| GCTTTAGCTCCTCGGTTAGC+AGG | 0.462202 | 2_2:-36047577 | None:intergenic |
| AACGGGCACGTCAAATGGGC+TGG | 0.466500 | 2_2:+36047789 | Msa0249350:CDS |
| CATCATCATCATGGTTAAGA+TGG | 0.472402 | 2_2:+36045565 | Msa0249350:CDS |
| TCCCTCTTTCAACTCGCTCC+TGG | 0.476690 | 2_2:+36045726 | Msa0249350:CDS |
| CTAGCCAATCTCTCTGTCTC+AGG | 0.479185 | 2_2:+36045852 | Msa0249350:CDS |
| TCTCAATACCAGAGAGAAGC+AGG | 0.490442 | 2_2:+36047671 | Msa0249350:CDS |
| GCACGTCAAATGGGCTGGGA+AGG | 0.491299 | 2_2:+36047794 | Msa0249350:CDS |
| ACGACTTGTTCAAATCAAAT+CGG | 0.492712 | 2_2:+36045424 | Msa0249350:five_prime_UTR |
| GGAGATGGAGAAGCAGTTTG+TGG | 0.495407 | 2_2:+36047553 | Msa0249350:CDS |
| ACGGCACATGAACATAACTT+TGG | 0.514290 | 2_2:+36047628 | Msa0249350:CDS |
| TGCAACTGAAACGTGCGAGC+AGG | 0.522870 | 2_2:+36047706 | Msa0249350:CDS |
| AATAGTGCACTTATATGCAT+TGG | 0.523962 | 2_2:-36047995 | None:intergenic |
| AAGAAAGATACATAGAATCC+TGG | 0.529273 | 2_2:-36045464 | None:intergenic |
| CCCGGAACTAAGGGAGGAGA+TGG | 0.529577 | 2_2:+36047538 | Msa0249350:CDS |
| CTTTACTGGAGATTCAAGAA+TGG | 0.530795 | 2_2:+36045639 | Msa0249350:CDS |
| CAAGGAGAGAAAGATAACTT+TGG | 0.536228 | 2_2:+36047757 | Msa0249350:CDS |
| GACAGGACATGGGAAGGAAG+TGG | 0.541545 | 2_2:+36045375 | Msa0249350:five_prime_UTR |
| TTGAATCTCCAGTAAAGAGC+AGG | 0.546893 | 2_2:-36045633 | None:intergenic |
| GATAAAGAAAGAATGTCAAG+AGG | 0.547644 | 2_2:+36045531 | Msa0249350:exon |
| ACGGGCACGTCAAATGGGCT+GGG | 0.550522 | 2_2:+36047790 | Msa0249350:CDS |
| TACCAGGAGCGAGTTGAAAG+AGG | 0.550746 | 2_2:-36045728 | None:intergenic |
| ACAGGACATGGGAAGGAAGT+GGG | 0.558283 | 2_2:+36045376 | Msa0249350:five_prime_UTR |
| CAATTGTAAAGGACAGGACA+TGG | 0.559323 | 2_2:+36045364 | None:intergenic |
| GATCTGATTCATCATCATCA+TGG | 0.566715 | 2_2:+36045556 | Msa0249350:CDS |
| GGAGGACAGTGACAGATACA+AGG | 0.569848 | 2_2:-36045696 | None:intergenic |
| TGTGCTGATCAACAGATTGT+GGG | 0.571404 | 2_2:+36047507 | Msa0249350:intron |
| GAGAAAGATAACTTTGGTGT+GGG | 0.574074 | 2_2:+36047763 | Msa0249350:CDS |
| GGGTAACGACCCGGAACTAA+GGG | 0.576074 | 2_2:+36047529 | Msa0249350:CDS |
| CAGTTTCTGAAGCGCACACA+CGG | 0.588751 | 2_2:+36047609 | Msa0249350:CDS |
| AGAGAAAGATAACTTTGGTG+TGG | 0.590009 | 2_2:+36047762 | Msa0249350:CDS |
| ACCAGGAGCGAGTTGAAAGA+GGG | 0.597191 | 2_2:-36045727 | None:intergenic |
| AGTTGAAAGAGGGATAGAGG+AGG | 0.604123 | 2_2:-36045717 | None:intergenic |
| GGCCGAAGCCATGCTAACCA+AGG | 0.621717 | 2_2:+36047739 | Msa0249350:CDS |
| TAACGACCCGGAACTAAGGG+AGG | 0.623910 | 2_2:+36047532 | Msa0249350:CDS |
| ATAAAGAAAGAATGTCAAGA+GGG | 0.627432 | 2_2:+36045532 | Msa0249350:exon |
| TTGGCTGAAGCAAAACGAGT+GGG | 0.643649 | 2_2:+36047647 | Msa0249350:CDS |
| AATTGTAAAGGACAGGACAT+GGG | 0.656640 | 2_2:+36045365 | None:intergenic |
| GCAAACAACAACATATAACC+AGG | 0.656903 | 2_2:+36045446 | Msa0249350:five_prime_UTR |
| ATTACCACGATACTATCCCA+TGG | 0.659447 | 2_2:+36048015 | Msa0249350:three_prime_UTR |
| GCTTCCATGGGATAGTATCG+TGG | 0.662510 | 2_2:-36048019 | None:intergenic |
| TTTGGCTGAAGCAAAACGAG+TGG | 0.669880 | 2_2:+36047646 | Msa0249350:CDS |
| GTGCTGATCAACAGATTGTG+GGG | 0.675871 | 2_2:+36047508 | Msa0249350:intron |
| GTAAAGGACAGGACATGGGA+AGG | 0.679769 | 2_2:+36045369 | None:intergenic |
| GTTTGTGGACCTGCTAACCG+AGG | 0.690695 | 2_2:+36047568 | Msa0249350:CDS |
| ATGCATTGGTATCATCTGTG+AGG | 0.700349 | 2_2:-36047981 | None:intergenic |
| ATATCAGCTTTAATGGTGTG+TGG | 0.706076 | 2_2:+36045609 | Msa0249350:CDS |
| TGCTGATCAACAGATTGTGG+GGG | 0.721562 | 2_2:+36047509 | Msa0249350:intron |
| GGACAGTGACAGATACAAGG+AGG | 0.725607 | 2_2:-36045693 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTATATTAATTTTTGATA+TGG | + | chr2_2:36047844-36047863 | Msa0249350:three_prime_UTR | 10.0% |
| !! | TGATATCATTCTATACTAAT+AGG | - | chr2_2:36046264-36046283 | None:intergenic | 20.0% |
| !! | ATTAGTATAGAATGATATCA+AGG | + | chr2_2:36046264-36046283 | Msa0249350:intron | 20.0% |
| !! | TTAGTATAGAATGATATCAA+GGG | + | chr2_2:36046265-36046284 | Msa0249350:intron | 20.0% |
| !!! | CTCTAAAATTGTGTATAATA+CGG | - | chr2_2:36046524-36046543 | None:intergenic | 20.0% |
| !! | TTATATCGAATAAAATGATG+AGG | + | chr2_2:36046597-36046616 | Msa0249350:intron | 20.0% |
| !! | TGGATGAATAATATTTAGAT+AGG | + | chr2_2:36046953-36046972 | Msa0249350:intron | 20.0% |
| !! | TGATTTACGATAATACATTA+TGG | + | chr2_2:36047200-36047219 | Msa0249350:intron | 20.0% |
| !! | TGGTATAATCTATTATTCAA+TGG | - | chr2_2:36047404-36047423 | None:intergenic | 20.0% |
| ! | ATAAAGAAAGAATGTCAAGA+GGG | + | chr2_2:36045532-36045551 | Msa0249350:exon | 25.0% |
| ! | ATCGAAGATAATTAATTACC+AGG | - | chr2_2:36045747-36045766 | None:intergenic | 25.0% |
| ! | ATGAATGAATGAGTAAATCT+GGG | - | chr2_2:36045815-36045834 | None:intergenic | 25.0% |
| ! | AATGAATGAATGAGTAAATC+TGG | - | chr2_2:36045816-36045835 | None:intergenic | 25.0% |
| !!! | CACATGATTTTCATTGATTT+AGG | + | chr2_2:36046019-36046038 | Msa0249350:intron | 25.0% |
| ! | GAATAAAATAAATGAGTTCG+TGG | + | chr2_2:36046093-36046112 | Msa0249350:intron | 25.0% |
| ! | ACTAATAGGAAACTCTTATA+TGG | - | chr2_2:36046250-36046269 | None:intergenic | 25.0% |
| !!! | ATTTTAACTCTTGTGAATTG+AGG | - | chr2_2:36046570-36046589 | None:intergenic | 25.0% |
| ! | TCACAAGAGTTAAAATATCT+TGG | + | chr2_2:36046574-36046593 | Msa0249350:intron | 25.0% |
| !!! | AAAAGTATTACCCAAGTTTA+AGG | + | chr2_2:36046701-36046720 | Msa0249350:intron | 25.0% |
| !!! | TGTTATATGAGACTGATTTT+TGG | + | chr2_2:36046757-36046776 | Msa0249350:intron | 25.0% |
| !! | TATTAAGAAAGACAGGTTTT+GGG | - | chr2_2:36046863-36046882 | None:intergenic | 25.0% |
| ! | ACTAAATATGCAATGTTATG+TGG | - | chr2_2:36046904-36046923 | None:intergenic | 25.0% |
| !!! | TAGAGATGAAAATGTTTTGA+TGG | + | chr2_2:36046933-36046952 | Msa0249350:intron | 25.0% |
| ! | CAGATCTAAATTCTTCTTAA+TGG | - | chr2_2:36047161-36047180 | None:intergenic | 25.0% |
| ! | ACGACTTGTTCAAATCAAAT+CGG | + | chr2_2:36045424-36045443 | Msa0249350:five_prime_UTR | 30.0% |
| AAGAAAGATACATAGAATCC+TGG | - | chr2_2:36045467-36045486 | None:intergenic | 30.0% | |
| GATAAAGAAAGAATGTCAAG+AGG | + | chr2_2:36045531-36045550 | Msa0249350:exon | 30.0% | |
| ! | TGCAATGATATCAGCTTTAA+TGG | + | chr2_2:36045602-36045621 | Msa0249350:CDS | 30.0% |
| !!! | TCCAATCATTTTAACTGACA+GGG | - | chr2_2:36045968-36045987 | None:intergenic | 30.0% |
| ATTGATGTGTTGAATGGTAA+AGG | + | chr2_2:36045994-36046013 | Msa0249350:intron | 30.0% | |
| ! | GTGTCGATATACAAGAAATA+AGG | + | chr2_2:36046115-36046134 | Msa0249350:intron | 30.0% |
| ATACAAGAAATAAGGTAGTG+TGG | + | chr2_2:36046123-36046142 | Msa0249350:intron | 30.0% | |
| !! | TGGTTTCTAGTAAAGAAATC+AGG | - | chr2_2:36046291-36046310 | None:intergenic | 30.0% |
| TGATTTCTTTACTAGAAACC+AGG | + | chr2_2:36046290-36046309 | Msa0249350:intron | 30.0% | |
| !!! | TCTTTTTTCCCTTTTCCATA+TGG | + | chr2_2:36046329-36046348 | Msa0249350:intron | 30.0% |
| GACTAATACCATATGGAAAA+GGG | - | chr2_2:36046340-36046359 | None:intergenic | 30.0% | |
| AGACTAATACCATATGGAAA+AGG | - | chr2_2:36046341-36046360 | None:intergenic | 30.0% | |
| ! | TTTCCATATGGTATTAGTCT+TGG | + | chr2_2:36046341-36046360 | Msa0249350:intron | 30.0% |
| TAACCAAGACTAATACCATA+TGG | - | chr2_2:36046347-36046366 | None:intergenic | 30.0% | |
| GAAAATCATGTACTTTCAAG+AGG | - | chr2_2:36046417-36046436 | None:intergenic | 30.0% | |
| TTCAAGAAAAGAAGCTGAAA+CGG | + | chr2_2:36046646-36046665 | Msa0249350:intron | 30.0% | |
| GGAAATTTCTCCTTAAACTT+GGG | - | chr2_2:36046714-36046733 | None:intergenic | 30.0% | |
| !! | ATATGAGACTGATTTTTGGA+TGG | + | chr2_2:36046761-36046780 | Msa0249350:intron | 30.0% |
| TCCTGAACTTAATCTTCTAT+TGG | - | chr2_2:36046794-36046813 | None:intergenic | 30.0% | |
| ! | GTATTAAGAAAGACAGGTTT+TGG | - | chr2_2:36046864-36046883 | None:intergenic | 30.0% |
| TAAGAGACTACATTAGATTG+TGG | + | chr2_2:36047084-36047103 | Msa0249350:intron | 30.0% | |
| AAGAGACTACATTAGATTGT+GGG | + | chr2_2:36047085-36047104 | Msa0249350:intron | 30.0% | |
| ! | TTTTAAGCACATTAAGTGCA+AGG | - | chr2_2:36047308-36047327 | None:intergenic | 30.0% |
| TCAAAATCTTGATCAATAGC+TGG | - | chr2_2:36047424-36047443 | None:intergenic | 30.0% | |
| AATAGTGCACTTATATGCAT+TGG | - | chr2_2:36047998-36048017 | None:intergenic | 30.0% | |
| GCAAACAACAACATATAACC+AGG | + | chr2_2:36045446-36045465 | Msa0249350:five_prime_UTR | 35.0% | |
| GATCTGATTCATCATCATCA+TGG | + | chr2_2:36045556-36045575 | Msa0249350:CDS | 35.0% | |
| CATCATCATCATGGTTAAGA+TGG | + | chr2_2:36045565-36045584 | Msa0249350:CDS | 35.0% | |
| ATCATGGTTAAGATGGTGTT+TGG | + | chr2_2:36045572-36045591 | Msa0249350:CDS | 35.0% | |
| ! | ATATCAGCTTTAATGGTGTG+TGG | + | chr2_2:36045609-36045628 | Msa0249350:CDS | 35.0% |
| CTTTACTGGAGATTCAAGAA+TGG | + | chr2_2:36045639-36045658 | Msa0249350:CDS | 35.0% | |
| CATTCATTTCTTTCTTCCAC+AGG | + | chr2_2:36045828-36045847 | Msa0249350:intron | 35.0% | |
| ! | CAGGTTAGACTTTCTTTTCA+TGG | + | chr2_2:36045871-36045890 | Msa0249350:intron | 35.0% |
| GTGAAATCACACAGCATAAA+AGG | - | chr2_2:36045909-36045928 | None:intergenic | 35.0% | |
| TCCCTGTCAGTTAAAATGAT+TGG | + | chr2_2:36045964-36045983 | Msa0249350:intron | 35.0% | |
| !!! | CTCCAATCATTTTAACTGAC+AGG | - | chr2_2:36045969-36045988 | None:intergenic | 35.0% |
| GTCAGTTAAAATGATTGGAG+TGG | + | chr2_2:36045969-36045988 | Msa0249350:intron | 35.0% | |
| GTGGTAATTGATGTGTTGAA+TGG | + | chr2_2:36045988-36046007 | Msa0249350:intron | 35.0% | |
| AGAAATAAGGTAGTGTGGAA+TGG | + | chr2_2:36046128-36046147 | Msa0249350:intron | 35.0% | |
| GTAATAGAGTGTACTCAAAG+AGG | + | chr2_2:36046173-36046192 | Msa0249350:intron | 35.0% | |
| AGGAAACTCTTATATGGCAT+TGG | - | chr2_2:36046244-36046263 | None:intergenic | 35.0% | |
| !! | TTAGTCTTGGTTAAAGAGTC+TGG | + | chr2_2:36046354-36046373 | Msa0249350:intron | 35.0% |
| AGTCTGGAGAAGAAATAAGT+GGG | + | chr2_2:36046370-36046389 | Msa0249350:intron | 35.0% | |
| CTTGTGAATTGAGGTATAGA+TGG | - | chr2_2:36046561-36046580 | None:intergenic | 35.0% | |
| GGGAAATTTCTCCTTAAACT+TGG | - | chr2_2:36046715-36046734 | None:intergenic | 35.0% | |
| TCAGTCTCATATAACATCAC+AGG | - | chr2_2:36046753-36046772 | None:intergenic | 35.0% | |
| GCCAATAGAAGATTAAGTTC+AGG | + | chr2_2:36046790-36046809 | Msa0249350:intron | 35.0% | |
| AACCTGTCTTTCTTAATACC+AGG | + | chr2_2:36046865-36046884 | Msa0249350:intron | 35.0% | |
| AATGCATTAGTGATGAAGTG+AGG | + | chr2_2:36046997-36047016 | Msa0249350:intron | 35.0% | |
| ! | AGCACTTTTGTCTGAAAAGA+TGG | + | chr2_2:36047021-36047040 | Msa0249350:intron | 35.0% |
| TTCTCTATATATACCACCCA+AGG | - | chr2_2:36047057-36047076 | None:intergenic | 35.0% | |
| ATTGTGGGTAGTCCAATAAT+TGG | + | chr2_2:36047100-36047119 | Msa0249350:intron | 35.0% | |
| CTCACTCTACATCCAATTAT+TGG | - | chr2_2:36047115-36047134 | None:intergenic | 35.0% | |
| TTCTTAATGGTACTACCTAC+AGG | - | chr2_2:36047148-36047167 | None:intergenic | 35.0% | |
| !!! | CTTTTCTAGCTAAGTAGGAT+TGG | - | chr2_2:36047245-36047264 | None:intergenic | 35.0% |
| CAATCCTACTTAGCTAGAAA+AGG | + | chr2_2:36047243-36047262 | Msa0249350:intron | 35.0% | |
| !!! | AAAGCCTTTTCTAGCTAAGT+AGG | - | chr2_2:36047250-36047269 | None:intergenic | 35.0% |
| GTGCAAGGATTGATATAAAC+AGG | - | chr2_2:36047293-36047312 | None:intergenic | 35.0% | |
| CGGTATATAATGCAAACTGA+TGG | - | chr2_2:36047340-36047359 | None:intergenic | 35.0% | |
| CAGTTTGCATTATATACCGT+CGG | + | chr2_2:36047341-36047360 | Msa0249350:intron | 35.0% | |
| TTAACCCAGTAGGTATTTCT+TGG | + | chr2_2:36047368-36047387 | Msa0249350:intron | 35.0% | |
| TTGACCAAGAAATACCTACT+GGG | - | chr2_2:36047375-36047394 | None:intergenic | 35.0% | |
| ATTGACCAAGAAATACCTAC+TGG | - | chr2_2:36047376-36047395 | None:intergenic | 35.0% | |
| GTAGGTATTTCTTGGTCAAT+TGG | + | chr2_2:36047376-36047395 | Msa0249350:intron | 35.0% | |
| AAACCTAGCAAGTATATGCA+TGG | - | chr2_2:36047455-36047474 | None:intergenic | 35.0% | |
| CAAAGTTATCTTTCTCTCCT+TGG | - | chr2_2:36047759-36047778 | None:intergenic | 35.0% | |
| CAAGGAGAGAAAGATAACTT+TGG | + | chr2_2:36047757-36047776 | Msa0249350:CDS | 35.0% | |
| AGAGAAAGATAACTTTGGTG+TGG | + | chr2_2:36047762-36047781 | Msa0249350:CDS | 35.0% | |
| ! | GAGAAAGATAACTTTGGTGT+GGG | + | chr2_2:36047763-36047782 | Msa0249350:CDS | 35.0% |
| ! | TAACTTTGGTGTGGGAAAAA+CGG | + | chr2_2:36047771-36047790 | Msa0249350:CDS | 35.0% |
| TCACAAACAAACACAGTAGA+AGG | - | chr2_2:36047931-36047950 | None:intergenic | 35.0% | |
| !!! | GATGAGTTTTTAGCTTCCAT+GGG | - | chr2_2:36048034-36048053 | None:intergenic | 35.0% |
| !!! | TGATGAGTTTTTAGCTTCCA+TGG | - | chr2_2:36048035-36048054 | None:intergenic | 35.0% |
| TTGAATCTCCAGTAAAGAGC+AGG | - | chr2_2:36045636-36045655 | None:intergenic | 40.0% | |
| GACAGGGAACAAATTAGCAA+AGG | - | chr2_2:36045952-36045971 | None:intergenic | 40.0% | |
| GTAGTAGAGTGTACTCAAAG+AGG | + | chr2_2:36046051-36046070 | Msa0249350:intron | 40.0% | |
| !! | ACTCAAAGAGGTATTGTCGA+TGG | + | chr2_2:36046063-36046082 | Msa0249350:intron | 40.0% |
| ! | AGGTATTGTCGATGGATCTA+GGG | + | chr2_2:36046071-36046090 | Msa0249350:intron | 40.0% |
| AAGGTAGTGTGGAATGGTAA+AGG | + | chr2_2:36046134-36046153 | Msa0249350:intron | 40.0% | |
| !! | ATGGTAAAGGCTCTAGGAAA+AGG | + | chr2_2:36046147-36046166 | Msa0249350:intron | 40.0% |
| !! | ATATGGCATTGGCTAGTGTT+AGG | - | chr2_2:36046233-36046252 | None:intergenic | 40.0% |
| GAAGTAGTATATCATCGTCC+TGG | - | chr2_2:36046311-36046330 | None:intergenic | 40.0% | |
| GAGTCTGGAGAAGAAATAAG+TGG | + | chr2_2:36046369-36046388 | Msa0249350:intron | 40.0% | |
| ! | TAAGTGGGAAGTTTGAGACA+TGG | + | chr2_2:36046385-36046404 | Msa0249350:intron | 40.0% |
| ATTGAGGTATAGATGGTCTC+TGG | - | chr2_2:36046554-36046573 | None:intergenic | 40.0% | |
| AAGAAAAGAAGCTGAAACGG+AGG | + | chr2_2:36046649-36046668 | Msa0249350:intron | 40.0% | |
| ACAGGTCTTAGAGCTATGTT+GGG | - | chr2_2:36046735-36046754 | None:intergenic | 40.0% | |
| !! | TGAGACTGATTTTTGGATGG+TGG | + | chr2_2:36046764-36046783 | Msa0249350:intron | 40.0% |
| !!! | ACTGATTTTTGGATGGTGGA+AGG | + | chr2_2:36046768-36046787 | Msa0249350:intron | 40.0% |
| GTCCTGGTATTAAGAAAGAC+AGG | - | chr2_2:36046870-36046889 | None:intergenic | 40.0% | |
| AAGATGGCAGAATATCACCT+TGG | + | chr2_2:36047037-36047056 | Msa0249350:intron | 40.0% | |
| AGATGGCAGAATATCACCTT+GGG | + | chr2_2:36047038-36047057 | Msa0249350:intron | 40.0% | |
| ! | GTACTACCTACAGGTTTTCT+AGG | - | chr2_2:36047139-36047158 | None:intergenic | 40.0% |
| TTGCATTATATACCGTCGGT+TGG | + | chr2_2:36047345-36047364 | Msa0249350:intron | 40.0% | |
| TCACCATGCATATACTTGCT+AGG | + | chr2_2:36047449-36047468 | Msa0249350:intron | 40.0% | |
| ! | TTGTGCTGATCAACAGATTG+TGG | + | chr2_2:36047506-36047525 | Msa0249350:intron | 40.0% |
| ! | TGTGCTGATCAACAGATTGT+GGG | + | chr2_2:36047507-36047526 | Msa0249350:intron | 40.0% |
| ACGGCACATGAACATAACTT+TGG | + | chr2_2:36047628-36047647 | Msa0249350:CDS | 40.0% | |
| ! | AACTTTGGTGTGGGAAAAAC+GGG | + | chr2_2:36047772-36047791 | Msa0249350:CDS | 40.0% |
| ! | ATGCATTGGTATCATCTGTG+AGG | - | chr2_2:36047984-36048003 | None:intergenic | 40.0% |
| ATTACCACGATACTATCCCA+TGG | + | chr2_2:36048015-36048034 | Msa0249350:three_prime_UTR | 40.0% | |
| AGGAGGACAAGAAGAGAGTT+TGG | - | chr2_2:36045679-36045698 | None:intergenic | 45.0% | |
| AGTTGAAAGAGGGATAGAGG+AGG | - | chr2_2:36045720-36045739 | None:intergenic | 45.0% | |
| CTAACCTGAGACAGAGAGAT+TGG | - | chr2_2:36045859-36045878 | None:intergenic | 45.0% | |
| !! | GAGGTATTGTCGATGGATCT+AGG | + | chr2_2:36046070-36046089 | Msa0249350:intron | 45.0% |
| TGTGGAATGGTAAAGGCTCT+AGG | + | chr2_2:36046141-36046160 | Msa0249350:intron | 45.0% | |
| ! | GAGTGTACTCAAAGAGGTGT+TGG | + | chr2_2:36046179-36046198 | Msa0249350:intron | 45.0% |
| AAAGAAGCTGAAACGGAGGA+AGG | + | chr2_2:36046653-36046672 | Msa0249350:intron | 45.0% | |
| CACAGGTCTTAGAGCTATGT+TGG | - | chr2_2:36046736-36046755 | None:intergenic | 45.0% | |
| TTGTGTGACAGAAACAGCGT+TGG | - | chr2_2:36046820-36046839 | None:intergenic | 45.0% | |
| GTGAGACCTAGAAAACCTGT+AGG | + | chr2_2:36047130-36047149 | Msa0249350:intron | 45.0% | |
| ! | GTGCTGATCAACAGATTGTG+GGG | + | chr2_2:36047508-36047527 | Msa0249350:intron | 45.0% |
| TGCTGATCAACAGATTGTGG+GGG | + | chr2_2:36047509-36047528 | Msa0249350:intron | 45.0% | |
| !! | CTCTTGTAGCTTTAGCTCCT+CGG | - | chr2_2:36047588-36047607 | None:intergenic | 45.0% |
| TTTGGCTGAAGCAAAACGAG+TGG | + | chr2_2:36047646-36047665 | Msa0249350:CDS | 45.0% | |
| TTGGCTGAAGCAAAACGAGT+GGG | + | chr2_2:36047647-36047666 | Msa0249350:CDS | 45.0% | |
| TCTCAATACCAGAGAGAAGC+AGG | + | chr2_2:36047671-36047690 | Msa0249350:CDS | 45.0% | |
| CTTTCTCTCCTTGGTTAGCA+TGG | - | chr2_2:36047750-36047769 | None:intergenic | 45.0% | |
| GAAAAACGGGCACGTCAAAT+GGG | + | chr2_2:36047785-36047804 | Msa0249350:CDS | 45.0% | |
| ACAGGACATGGGAAGGAAGT+GGG | + | chr2_2:36045376-36045395 | Msa0249350:five_prime_UTR | 50.0% | |
| TGTGTGGTCCTGCTCTTTAC+TGG | + | chr2_2:36045625-36045644 | Msa0249350:CDS | 50.0% | |
| GGACAGTGACAGATACAAGG+AGG | - | chr2_2:36045696-36045715 | None:intergenic | 50.0% | |
| GGAGGACAGTGACAGATACA+AGG | - | chr2_2:36045699-36045718 | None:intergenic | 50.0% | |
| TGAAAGAGGGATAGAGGAGG+AGG | - | chr2_2:36045717-36045736 | None:intergenic | 50.0% | |
| ! | GCGAGTTGAAAGAGGGATAG+AGG | - | chr2_2:36045723-36045742 | None:intergenic | 50.0% |
| ! | ACCAGGAGCGAGTTGAAAGA+GGG | - | chr2_2:36045730-36045749 | None:intergenic | 50.0% |
| ! | TACCAGGAGCGAGTTGAAAG+AGG | - | chr2_2:36045731-36045750 | None:intergenic | 50.0% |
| ! | AGAGAGATTGGCTAGTCCTG+TGG | - | chr2_2:36045847-36045866 | None:intergenic | 50.0% |
| CTAGCCAATCTCTCTGTCTC+AGG | + | chr2_2:36045852-36045871 | Msa0249350:CDS | 50.0% | |
| TGGCAGAATATCACCTTGGG+TGG | + | chr2_2:36047041-36047060 | Msa0249350:intron | 50.0% | |
| CTACTGGGTTAACCAACCGA+CGG | - | chr2_2:36047360-36047379 | None:intergenic | 50.0% | |
| TCCATCTCCTCCCTTAGTTC+CGG | - | chr2_2:36047542-36047561 | None:intergenic | 50.0% | |
| GGAGATGGAGAAGCAGTTTG+TGG | + | chr2_2:36047553-36047572 | Msa0249350:CDS | 50.0% | |
| !! | CAGTTTCTGAAGCGCACACA+CGG | + | chr2_2:36047609-36047628 | Msa0249350:CDS | 50.0% |
| CACATTTGCCTGCTTCTCTC+TGG | - | chr2_2:36047682-36047701 | None:intergenic | 50.0% | |
| CTCCTTGGTTAGCATGGCTT+CGG | - | chr2_2:36047744-36047763 | None:intergenic | 50.0% | |
| GGAAAAACGGGCACGTCAAA+TGG | + | chr2_2:36047784-36047803 | Msa0249350:CDS | 50.0% | |
| GCTTCCATGGGATAGTATCG+TGG | - | chr2_2:36048022-36048041 | None:intergenic | 50.0% | |
| GACAGGACATGGGAAGGAAG+TGG | + | chr2_2:36045375-36045394 | Msa0249350:five_prime_UTR | 55.0% | |
| TCCCTCTTTCAACTCGCTCC+TGG | + | chr2_2:36045726-36045745 | Msa0249350:CDS | 55.0% | |
| ! | CGTCGGTTGGTTAACCCAGT+AGG | + | chr2_2:36047358-36047377 | Msa0249350:intron | 55.0% |
| AGATTGTGGGGGTAACGACC+CGG | + | chr2_2:36047520-36047539 | Msa0249350:intron | 55.0% | |
| GGGTAACGACCCGGAACTAA+GGG | + | chr2_2:36047529-36047548 | Msa0249350:CDS | 55.0% | |
| TAACGACCCGGAACTAAGGG+AGG | + | chr2_2:36047532-36047551 | Msa0249350:CDS | 55.0% | |
| CCATCTCCTCCCTTAGTTCC+GGG | - | chr2_2:36047541-36047560 | None:intergenic | 55.0% | |
| GTTTGTGGACCTGCTAACCG+AGG | + | chr2_2:36047568-36047587 | Msa0249350:CDS | 55.0% | |
| ! | GCTTTAGCTCCTCGGTTAGC+AGG | - | chr2_2:36047580-36047599 | None:intergenic | 55.0% |
| TGCAACTGAAACGTGCGAGC+AGG | + | chr2_2:36047706-36047725 | Msa0249350:CDS | 55.0% | |
| !! | TGTGGTGCTGTGCAGAGTCC+TGG | - | chr2_2:36046886-36046905 | None:intergenic | 60.0% |
| GGGGTAACGACCCGGAACTA+AGG | + | chr2_2:36047528-36047547 | Msa0249350:CDS | 60.0% | |
| CCCGGAACTAAGGGAGGAGA+TGG | + | chr2_2:36047538-36047557 | Msa0249350:CDS | 60.0% | |
| GTGCGAGCAGGCAAGAGAAC+AGG | + | chr2_2:36047718-36047737 | Msa0249350:CDS | 60.0% | |
| GGCCGAAGCCATGCTAACCA+AGG | + | chr2_2:36047739-36047758 | Msa0249350:CDS | 60.0% | |
| AACGGGCACGTCAAATGGGC+TGG | + | chr2_2:36047789-36047808 | Msa0249350:CDS | 60.0% | |
| ! | ACGGGCACGTCAAATGGGCT+GGG | + | chr2_2:36047790-36047809 | Msa0249350:CDS | 60.0% |
| !! | GCACGTCAAATGGGCTGGGA+AGG | + | chr2_2:36047794-36047813 | Msa0249350:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 36045375 | 36048106 | 36045375 | ID=Msa0249350;Name=Msa0249350 |
| chr2_2 | mRNA | 36045375 | 36048106 | 36045375 | ID=Msa0249350-mRNA-1;Parent=Msa0249350;Name=Msa0249350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=168|1|1|1|1|1|3|283|176 |
| chr2_2 | exon | 36045375 | 36045747 | 36045375 | ID=Msa0249350-mRNA-1:exon:11547;Parent=Msa0249350-mRNA-1 |
| chr2_2 | exon | 36045850 | 36045873 | 36045850 | ID=Msa0249350-mRNA-1:exon:11548;Parent=Msa0249350-mRNA-1 |
| chr2_2 | exon | 36047522 | 36048106 | 36047522 | ID=Msa0249350-mRNA-1:exon:11549;Parent=Msa0249350-mRNA-1 |
| chr2_2 | five_prime_UTR | 36045375 | 36045542 | 36045375 | ID=Msa0249350-mRNA-1:five_prime_utr;Parent=Msa0249350-mRNA-1 |
| chr2_2 | CDS | 36045543 | 36045747 | 36045543 | ID=Msa0249350-mRNA-1:cds;Parent=Msa0249350-mRNA-1 |
| chr2_2 | CDS | 36045850 | 36045873 | 36045850 | ID=Msa0249350-mRNA-1:cds;Parent=Msa0249350-mRNA-1 |
| chr2_2 | CDS | 36047522 | 36047823 | 36047522 | ID=Msa0249350-mRNA-1:cds;Parent=Msa0249350-mRNA-1 |
| chr2_2 | three_prime_UTR | 36047824 | 36048106 | 36047824 | ID=Msa0249350-mRNA-1:three_prime_utr;Parent=Msa0249350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
