Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287840 | XP_013463827.1 | 97.238 | 181 | 1 | 1 | 1 | 181 | 1 | 177 | 1.05e-124 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287840 | A0A072V7U8 | 97.238 | 181 | 1 | 1 | 1 | 181 | 1 | 177 | 5.01e-125 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030160 | Msa0287840 | 0.832165 | 1.104522e-55 | -8.615850e-47 |
| Msa0125650 | Msa0287840 | 0.836139 | 1.114992e-56 | -8.615850e-47 |
| Msa0217700 | Msa0287840 | 0.829867 | 4.047588e-55 | -8.615850e-47 |
| Msa0240900 | Msa0287840 | 0.817807 | 2.722742e-52 | -8.615850e-47 |
| Msa0249350 | Msa0287840 | 0.817792 | 2.744214e-52 | -8.615850e-47 |
| Msa0257520 | Msa0287840 | 0.821002 | 5.089590e-53 | -8.615850e-47 |
| Msa0287840 | Msa0317970 | 0.814995 | 1.159856e-51 | -8.615850e-47 |
| Msa0287840 | Msa0674480 | 0.819103 | 1.384517e-52 | -8.615850e-47 |
| Msa0287840 | Msa0695880 | 0.810443 | 1.149840e-50 | -8.615850e-47 |
| Msa0287840 | Msa0707250 | 0.803281 | 3.757704e-49 | -8.615850e-47 |
| Msa0287840 | Msa0822500 | 0.802094 | 6.603702e-49 | -8.615850e-47 |
| Msa0287840 | Msa0833530 | 0.844631 | 6.708391e-59 | -8.615850e-47 |
| Msa0287840 | Msa0865030 | 0.804186 | 2.437750e-49 | -8.615850e-47 |
| Msa0287840 | Msa0878220 | 0.840437 | 8.700400e-58 | -8.615850e-47 |
| Msa0287840 | Msa0943970 | 0.828834 | 7.213255e-55 | -8.615850e-47 |
| Msa0287840 | Msa0944020 | 0.812490 | 4.130999e-51 | -8.615850e-47 |
| Msa0287840 | Msa1010530 | 0.801639 | 8.187172e-49 | -8.615850e-47 |
| Msa0287840 | Msa1034500 | 0.805008 | 1.642121e-49 | -8.615850e-47 |
| Msa0287840 | Msa1068600 | 0.813941 | 1.983409e-51 | -8.615850e-47 |
| Msa0287840 | Msa1089450 | 0.806807 | 6.875626e-50 | -8.615850e-47 |
| Msa0287840 | Msa1173340 | 0.826451 | 2.694066e-54 | -8.615850e-47 |
| Msa0287840 | Msa1179630 | 0.833871 | 4.156551e-56 | -8.615850e-47 |
| Msa0287840 | Msa1197130 | 0.809945 | 1.471937e-50 | -8.615850e-47 |
| Msa0287840 | Msa1213980 | 0.804585 | 2.012776e-49 | -8.615850e-47 |
| Msa0287840 | Msa1232700 | 0.840040 | 1.104544e-57 | -8.615850e-47 |
| Msa0287840 | Msa1307560 | 0.812575 | 3.956692e-51 | -8.615850e-47 |
| Msa0287840 | Msa1313280 | 0.806085 | 9.761168e-50 | -8.615850e-47 |
| Msa0287840 | Msa1319560 | 0.810161 | 1.322876e-50 | -8.615850e-47 |
| Msa0287840 | Msa1345100 | 0.812167 | 4.857973e-51 | -8.615850e-47 |
| Msa0287840 | Msa1346840 | 0.804282 | 2.328419e-49 | -8.615850e-47 |
| Msa0287840 | Msa1419690 | 0.802083 | 6.639241e-49 | -8.615850e-47 |
| Msa0287840 | Msa1463900 | 0.814755 | 1.310575e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287840 | MtrunA17_Chr2g0304821 | 97.238 | 181 | 1 | 1 | 1 | 181 | 1 | 177 | 9.65e-129 | 358 |
| Msa0287840 | MtrunA17_Chr4g0025231 | 45.977 | 174 | 88 | 2 | 11 | 179 | 4 | 176 | 4.07e-47 | 152 |
| Msa0287840 | MtrunA17_Chr2g0288981 | 46.875 | 160 | 79 | 3 | 23 | 179 | 11 | 167 | 2.53e-39 | 132 |
| Msa0287840 | MtrunA17_Chr7g0273171 | 38.037 | 163 | 82 | 5 | 18 | 179 | 17 | 161 | 1.29e-21 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287840 | AT2G24290.1 | 68.712 | 163 | 49 | 1 | 21 | 181 | 11 | 173 | 1.62e-83 | 244 |
| Msa0287840 | AT4G30996.1 | 69.753 | 162 | 48 | 1 | 21 | 181 | 11 | 172 | 6.43e-76 | 225 |
| Msa0287840 | AT2G32580.1 | 41.212 | 165 | 94 | 2 | 15 | 179 | 5 | 166 | 1.99e-41 | 138 |
| Msa0287840 | AT1G05070.1 | 44.720 | 161 | 87 | 2 | 18 | 178 | 8 | 166 | 1.61e-40 | 135 |
| Msa0287840 | AT4G04360.1 | 41.401 | 157 | 89 | 3 | 23 | 179 | 14 | 167 | 2.64e-31 | 112 |
| Msa0287840 | AT2G32580.2 | 48.000 | 100 | 52 | 0 | 79 | 178 | 4 | 103 | 1.49e-27 | 100 |
Find 64 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGATATCAGCTTTAA+TGG | 0.220257 | 2_3:+31147324 | Msa0287840:CDS |
| TGTGTGGTCCTGCTCTTTAC+TGG | 0.278230 | 2_3:+31147347 | Msa0287840:CDS |
| TCCATCTCCTCCCTTAGTTC+CGG | 0.283672 | 2_3:-31149261 | None:intergenic |
| AGGAGGACAAGAAGAGAGTT+TGG | 0.301376 | 2_3:-31147398 | None:intergenic |
| CCATCTCCTCCCTTAGTTCC+GGG | 0.315926 | 2_3:-31149260 | None:intergenic |
| CAAAGTTATCTTTCTCTCCT+TGG | 0.380854 | 2_3:-31149478 | None:intergenic |
| CACATTTGCCTGCTTCTCTC+TGG | 0.395639 | 2_3:-31149401 | None:intergenic |
| CTTTCTCTCCTTGGTTAGCA+TGG | 0.395830 | 2_3:-31149469 | None:intergenic |
| CTCTTGTAGCTTTAGCTCCT+CGG | 0.397219 | 2_3:-31149307 | None:intergenic |
| GTGCGAGCAGGCAAGAGAAC+AGG | 0.417931 | 2_3:+31149440 | Msa0287840:CDS |
| TCCCTCTTTCAACTCGCTCC+TGG | 0.419272 | 2_3:+31147448 | Msa0287840:CDS |
| CTCCTTGGTTAGCATGGCTT+CGG | 0.426309 | 2_3:-31149463 | None:intergenic |
| TCACAAACAAACACAGTAGA+AGG | 0.427297 | 2_3:-31149650 | None:intergenic |
| ATCATGGTTAAGATGGTGTT+TGG | 0.434886 | 2_3:+31147294 | Msa0287840:CDS |
| GCGAGTTGAAAGAGGGAAAG+AGG | 0.436769 | 2_3:-31147442 | None:intergenic |
| GGGGTAACGACCCGGAACTA+AGG | 0.440973 | 2_3:+31149250 | Msa0287840:CDS |
| TGAAAGAGGGAAAGAGGAGG+AGG | 0.458644 | 2_3:-31147436 | None:intergenic |
| CTAACCTGAGACAGAGAGAT+TGG | 0.459936 | 2_3:-31147578 | None:intergenic |
| CATCATCATCATGGTTAAGA+TGG | 0.460699 | 2_3:+31147287 | Msa0287840:CDS |
| GCTTTAGCTCCTCGGTTAGC+AGG | 0.462202 | 2_3:-31149299 | None:intergenic |
| AACGGGCACGTCAAATGGGC+TGG | 0.466500 | 2_3:+31149511 | Msa0287840:CDS |
| CTAGCCAATCTCTCTGTCTC+AGG | 0.479185 | 2_3:+31147574 | Msa0287840:CDS |
| TCTCAATACCAGAGAGAAGC+AGG | 0.490442 | 2_3:+31149393 | Msa0287840:CDS |
| GCACGTCAAATGGGCTGGGA+AGG | 0.491299 | 2_3:+31149516 | Msa0287840:CDS |
| ACGACTTGTTCAAATCAAAT+CGG | 0.492712 | 2_3:+31147124 | Msa0287840:five_prime_UTR |
| GGAGATGGAGAAGCAGTTTG+TGG | 0.495407 | 2_3:+31149275 | Msa0287840:CDS |
| ACGGCACATGAACATAACTT+TGG | 0.514290 | 2_3:+31149350 | Msa0287840:CDS |
| TGCAACTGAAACGTGCGAGC+AGG | 0.522870 | 2_3:+31149428 | Msa0287840:CDS |
| AATAGTGCACTTATATGCAT+TGG | 0.523962 | 2_3:-31149717 | None:intergenic |
| CCCGGAACTAAGGGAGGAGA+TGG | 0.529577 | 2_3:+31149260 | Msa0287840:CDS |
| CTTTACTGGAGATTCAAGAA+TGG | 0.530795 | 2_3:+31147361 | Msa0287840:CDS |
| CAAGGAGAGAAAGATAACTT+TGG | 0.536228 | 2_3:+31149479 | Msa0287840:CDS |
| GACAGGACATGGGAAGGAAG+TGG | 0.541545 | 2_3:+31147075 | Msa0287840:five_prime_UTR |
| TTGAATCTCCAGTAAAGAGC+AGG | 0.546893 | 2_3:-31147355 | None:intergenic |
| GATAAAGAAAGAATGTCAAG+AGG | 0.547644 | 2_3:+31147238 | Msa0287840:exon |
| ACGGGCACGTCAAATGGGCT+GGG | 0.550522 | 2_3:+31149512 | Msa0287840:CDS |
| TACCAGGAGCGAGTTGAAAG+AGG | 0.550746 | 2_3:-31147450 | None:intergenic |
| AAGAAAGATAGATAGAATCC+TGG | 0.555044 | 2_3:-31147164 | None:intergenic |
| ACAGGACATGGGAAGGAAGT+GGG | 0.558283 | 2_3:+31147076 | Msa0287840:five_prime_UTR |
| CAATTGTAAAGGACAGGACA+TGG | 0.559323 | 2_3:+31147064 | None:intergenic |
| GGAGGACAGTGACAGATACA+AGG | 0.569848 | 2_3:-31147418 | None:intergenic |
| TGTGCTGATCAACAGATTGT+GGG | 0.571404 | 2_3:+31149229 | Msa0287840:intron |
| GAGAAAGATAACTTTGGTGT+GGG | 0.574074 | 2_3:+31149485 | Msa0287840:CDS |
| GGGTAACGACCCGGAACTAA+GGG | 0.576074 | 2_3:+31149251 | Msa0287840:CDS |
| CAGTTTCTGAAGCGCACACA+CGG | 0.588751 | 2_3:+31149331 | Msa0287840:CDS |
| AGAGAAAGATAACTTTGGTG+TGG | 0.590009 | 2_3:+31149484 | Msa0287840:CDS |
| ACCAGGAGCGAGTTGAAAGA+GGG | 0.590371 | 2_3:-31147449 | None:intergenic |
| AGTTGAAAGAGGGAAAGAGG+AGG | 0.591057 | 2_3:-31147439 | None:intergenic |
| GGCCGAAGCCATGCTAACCA+AGG | 0.621717 | 2_3:+31149461 | Msa0287840:CDS |
| TAACGACCCGGAACTAAGGG+AGG | 0.623910 | 2_3:+31149254 | Msa0287840:CDS |
| ATAAAGAAAGAATGTCAAGA+GGG | 0.627432 | 2_3:+31147239 | Msa0287840:exon |
| TTGGCTGAAGCAAAACGAGT+GGG | 0.643649 | 2_3:+31149369 | Msa0287840:CDS |
| AATTGTAAAGGACAGGACAT+GGG | 0.656640 | 2_3:+31147065 | None:intergenic |
| GCAAACAACAACATATAACC+AGG | 0.656903 | 2_3:+31147146 | Msa0287840:five_prime_UTR |
| ATTACCACGATACTATCCCA+TGG | 0.659447 | 2_3:+31149737 | Msa0287840:three_prime_UTR |
| GCTTCCATGGGATAGTATCG+TGG | 0.662510 | 2_3:-31149741 | None:intergenic |
| TTTGGCTGAAGCAAAACGAG+TGG | 0.669880 | 2_3:+31149368 | Msa0287840:CDS |
| GTGCTGATCAACAGATTGTG+GGG | 0.675871 | 2_3:+31149230 | Msa0287840:intron |
| GTAAAGGACAGGACATGGGA+AGG | 0.679769 | 2_3:+31147069 | None:intergenic |
| GTTTGTGGACCTGCTAACCG+AGG | 0.690695 | 2_3:+31149290 | Msa0287840:CDS |
| ATGCATTGGTATCATCTGTG+AGG | 0.700349 | 2_3:-31149703 | None:intergenic |
| ATATCAGCTTTAATGGTGTG+TGG | 0.706076 | 2_3:+31147331 | Msa0287840:CDS |
| TGCTGATCAACAGATTGTGG+GGG | 0.721562 | 2_3:+31149231 | Msa0287840:intron |
| GGACAGTGACAGATACAAGG+AGG | 0.725607 | 2_3:-31147415 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTATATTAATTTTTGATA+TGG | + | chr2_3:31149566-31149585 | Msa0287840:three_prime_UTR | 10.0% |
| !! | TGATATCATTCTATACTAAT+AGG | - | chr2_3:31147986-31148005 | None:intergenic | 20.0% |
| !! | ATTAGTATAGAATGATATCA+AGG | + | chr2_3:31147986-31148005 | Msa0287840:intron | 20.0% |
| !! | TTAGTATAGAATGATATCAA+GGG | + | chr2_3:31147987-31148006 | Msa0287840:intron | 20.0% |
| !!! | CTCTAAAATTGTGTATAATA+CGG | - | chr2_3:31148246-31148265 | None:intergenic | 20.0% |
| !! | TTATATCGAATAAAATGATG+AGG | + | chr2_3:31148319-31148338 | Msa0287840:intron | 20.0% |
| !! | TGGATGAATAATATTTAGAT+AGG | + | chr2_3:31148675-31148694 | Msa0287840:intron | 20.0% |
| !! | TGATTTACGATAATACATTA+TGG | + | chr2_3:31148922-31148941 | Msa0287840:intron | 20.0% |
| !! | TGGTATAATCTATTATTCAA+TGG | - | chr2_3:31149126-31149145 | None:intergenic | 20.0% |
| ! | ATAAAGAAAGAATGTCAAGA+GGG | + | chr2_3:31147239-31147258 | Msa0287840:exon | 25.0% |
| ! | ATCGAAGATAATTAATTACC+AGG | - | chr2_3:31147469-31147488 | None:intergenic | 25.0% |
| ! | ATGAATGAATGAGTAAATCT+GGG | - | chr2_3:31147537-31147556 | None:intergenic | 25.0% |
| ! | AATGAATGAATGAGTAAATC+TGG | - | chr2_3:31147538-31147557 | None:intergenic | 25.0% |
| !!! | CACATGATTTTCATTGATTT+AGG | + | chr2_3:31147741-31147760 | Msa0287840:intron | 25.0% |
| ! | GAATAAAATAAATGAGTTCG+TGG | + | chr2_3:31147815-31147834 | Msa0287840:intron | 25.0% |
| ! | ACTAATAGGAAACTCTTATA+TGG | - | chr2_3:31147972-31147991 | None:intergenic | 25.0% |
| !!! | ATTTTAACTCTTGTGAATTG+AGG | - | chr2_3:31148292-31148311 | None:intergenic | 25.0% |
| ! | TCACAAGAGTTAAAATATCT+TGG | + | chr2_3:31148296-31148315 | Msa0287840:intron | 25.0% |
| !!! | AAAAGTATTACCCAAGTTTA+AGG | + | chr2_3:31148423-31148442 | Msa0287840:intron | 25.0% |
| !!! | TGTTATATGAGACTGATTTT+TGG | + | chr2_3:31148479-31148498 | Msa0287840:intron | 25.0% |
| !! | TATTAAGAAAGACAGGTTTT+GGG | - | chr2_3:31148585-31148604 | None:intergenic | 25.0% |
| ! | ACTAAATATGCAATGTTATG+TGG | - | chr2_3:31148626-31148645 | None:intergenic | 25.0% |
| !!! | TAGAGATGAAAATGTTTTGA+TGG | + | chr2_3:31148655-31148674 | Msa0287840:intron | 25.0% |
| ! | CAGATCTAAATTCTTCTTAA+TGG | - | chr2_3:31148883-31148902 | None:intergenic | 25.0% |
| ! | ACGACTTGTTCAAATCAAAT+CGG | + | chr2_3:31147124-31147143 | Msa0287840:five_prime_UTR | 30.0% |
| AAGAAAGATAGATAGAATCC+TGG | - | chr2_3:31147167-31147186 | None:intergenic | 30.0% | |
| GATAAAGAAAGAATGTCAAG+AGG | + | chr2_3:31147238-31147257 | Msa0287840:exon | 30.0% | |
| ! | TGCAATGATATCAGCTTTAA+TGG | + | chr2_3:31147324-31147343 | Msa0287840:CDS | 30.0% |
| !!! | TCCAATCATTTTAACTGACA+GGG | - | chr2_3:31147690-31147709 | None:intergenic | 30.0% |
| ATTGATGTGTTGAATGGTAA+AGG | + | chr2_3:31147716-31147735 | Msa0287840:intron | 30.0% | |
| ! | GTGTCGATATACAAGAAATA+AGG | + | chr2_3:31147837-31147856 | Msa0287840:intron | 30.0% |
| ATACAAGAAATAAGGTAGTG+TGG | + | chr2_3:31147845-31147864 | Msa0287840:intron | 30.0% | |
| !! | TGGTTTCTAGTAAAGAAATC+AGG | - | chr2_3:31148013-31148032 | None:intergenic | 30.0% |
| TGATTTCTTTACTAGAAACC+AGG | + | chr2_3:31148012-31148031 | Msa0287840:intron | 30.0% | |
| !!! | TCTTTTTTCCCTTTTCCATA+TGG | + | chr2_3:31148051-31148070 | Msa0287840:intron | 30.0% |
| GACTAATACCATATGGAAAA+GGG | - | chr2_3:31148062-31148081 | None:intergenic | 30.0% | |
| AGACTAATACCATATGGAAA+AGG | - | chr2_3:31148063-31148082 | None:intergenic | 30.0% | |
| ! | TTTCCATATGGTATTAGTCT+TGG | + | chr2_3:31148063-31148082 | Msa0287840:intron | 30.0% |
| TAACCAAGACTAATACCATA+TGG | - | chr2_3:31148069-31148088 | None:intergenic | 30.0% | |
| GAAAATCATGTACTTTCAAG+AGG | - | chr2_3:31148139-31148158 | None:intergenic | 30.0% | |
| TTCAAGAAAAGAAGCTGAAA+CGG | + | chr2_3:31148368-31148387 | Msa0287840:intron | 30.0% | |
| GGAAATTTCTCCTTAAACTT+GGG | - | chr2_3:31148436-31148455 | None:intergenic | 30.0% | |
| !! | ATATGAGACTGATTTTTGGA+TGG | + | chr2_3:31148483-31148502 | Msa0287840:intron | 30.0% |
| TCCTGAACTTAATCTTCTAT+TGG | - | chr2_3:31148516-31148535 | None:intergenic | 30.0% | |
| ! | GTATTAAGAAAGACAGGTTT+TGG | - | chr2_3:31148586-31148605 | None:intergenic | 30.0% |
| TAAGAGACTACATTAGATTG+TGG | + | chr2_3:31148806-31148825 | Msa0287840:intron | 30.0% | |
| AAGAGACTACATTAGATTGT+GGG | + | chr2_3:31148807-31148826 | Msa0287840:intron | 30.0% | |
| ! | TTTTAAGCACATTAAGTGCA+AGG | - | chr2_3:31149030-31149049 | None:intergenic | 30.0% |
| TCAAAATCTTGATCAATAGC+TGG | - | chr2_3:31149146-31149165 | None:intergenic | 30.0% | |
| AATAGTGCACTTATATGCAT+TGG | - | chr2_3:31149720-31149739 | None:intergenic | 30.0% | |
| GCAAACAACAACATATAACC+AGG | + | chr2_3:31147146-31147165 | Msa0287840:five_prime_UTR | 35.0% | |
| CATCATCATCATCATCATCA+TGG | + | chr2_3:31147272-31147291 | Msa0287840:CDS | 35.0% | |
| CATCATCATCATGGTTAAGA+TGG | + | chr2_3:31147287-31147306 | Msa0287840:CDS | 35.0% | |
| ATCATGGTTAAGATGGTGTT+TGG | + | chr2_3:31147294-31147313 | Msa0287840:CDS | 35.0% | |
| ! | ATATCAGCTTTAATGGTGTG+TGG | + | chr2_3:31147331-31147350 | Msa0287840:CDS | 35.0% |
| CTTTACTGGAGATTCAAGAA+TGG | + | chr2_3:31147361-31147380 | Msa0287840:CDS | 35.0% | |
| CATTCATTTCTTTCTTCCAC+AGG | + | chr2_3:31147550-31147569 | Msa0287840:intron | 35.0% | |
| ! | CAGGTTAGACTTTCTTTTCA+TGG | + | chr2_3:31147593-31147612 | Msa0287840:intron | 35.0% |
| GTGAAATCACACAGCATAAA+AGG | - | chr2_3:31147631-31147650 | None:intergenic | 35.0% | |
| TCCCTGTCAGTTAAAATGAT+TGG | + | chr2_3:31147686-31147705 | Msa0287840:intron | 35.0% | |
| !!! | CTCCAATCATTTTAACTGAC+AGG | - | chr2_3:31147691-31147710 | None:intergenic | 35.0% |
| GTCAGTTAAAATGATTGGAG+TGG | + | chr2_3:31147691-31147710 | Msa0287840:intron | 35.0% | |
| GTGGTAATTGATGTGTTGAA+TGG | + | chr2_3:31147710-31147729 | Msa0287840:intron | 35.0% | |
| AGAAATAAGGTAGTGTGGAA+TGG | + | chr2_3:31147850-31147869 | Msa0287840:intron | 35.0% | |
| GTAATAGAGTGTACTCAAAG+AGG | + | chr2_3:31147895-31147914 | Msa0287840:intron | 35.0% | |
| AGGAAACTCTTATATGGCAT+TGG | - | chr2_3:31147966-31147985 | None:intergenic | 35.0% | |
| !! | TTAGTCTTGGTTAAAGAGTC+TGG | + | chr2_3:31148076-31148095 | Msa0287840:intron | 35.0% |
| AGTCTGGAGAAGAAATAAGT+GGG | + | chr2_3:31148092-31148111 | Msa0287840:intron | 35.0% | |
| CTTGTGAATTGAGGTATAGA+TGG | - | chr2_3:31148283-31148302 | None:intergenic | 35.0% | |
| GGGAAATTTCTCCTTAAACT+TGG | - | chr2_3:31148437-31148456 | None:intergenic | 35.0% | |
| TCAGTCTCATATAACATCAC+AGG | - | chr2_3:31148475-31148494 | None:intergenic | 35.0% | |
| GCCAATAGAAGATTAAGTTC+AGG | + | chr2_3:31148512-31148531 | Msa0287840:intron | 35.0% | |
| AACCTGTCTTTCTTAATACC+AGG | + | chr2_3:31148587-31148606 | Msa0287840:intron | 35.0% | |
| AATGCATTAGTGATGAAGTG+AGG | + | chr2_3:31148719-31148738 | Msa0287840:intron | 35.0% | |
| ! | AGCACTTTTGTCTGAAAAGA+TGG | + | chr2_3:31148743-31148762 | Msa0287840:intron | 35.0% |
| TTCTCTATATATACCACCCA+AGG | - | chr2_3:31148779-31148798 | None:intergenic | 35.0% | |
| ATTGTGGGTAGTCCAATAAT+TGG | + | chr2_3:31148822-31148841 | Msa0287840:intron | 35.0% | |
| CTCACTCTACATCCAATTAT+TGG | - | chr2_3:31148837-31148856 | None:intergenic | 35.0% | |
| TTCTTAATGGTACTACCTAC+AGG | - | chr2_3:31148870-31148889 | None:intergenic | 35.0% | |
| !!! | CTTTTCTAGCTAAGTAGGAT+TGG | - | chr2_3:31148967-31148986 | None:intergenic | 35.0% |
| CAATCCTACTTAGCTAGAAA+AGG | + | chr2_3:31148965-31148984 | Msa0287840:intron | 35.0% | |
| !!! | AAAGCCTTTTCTAGCTAAGT+AGG | - | chr2_3:31148972-31148991 | None:intergenic | 35.0% |
| GTGCAAGGATTGATATAAAC+AGG | - | chr2_3:31149015-31149034 | None:intergenic | 35.0% | |
| CGGTATATAATGCAAACTGA+TGG | - | chr2_3:31149062-31149081 | None:intergenic | 35.0% | |
| CAGTTTGCATTATATACCGT+CGG | + | chr2_3:31149063-31149082 | Msa0287840:intron | 35.0% | |
| TTAACCCAGTAGGTATTTCT+TGG | + | chr2_3:31149090-31149109 | Msa0287840:intron | 35.0% | |
| TTGACCAAGAAATACCTACT+GGG | - | chr2_3:31149097-31149116 | None:intergenic | 35.0% | |
| ATTGACCAAGAAATACCTAC+TGG | - | chr2_3:31149098-31149117 | None:intergenic | 35.0% | |
| GTAGGTATTTCTTGGTCAAT+TGG | + | chr2_3:31149098-31149117 | Msa0287840:intron | 35.0% | |
| AAACCTAGCAAGTATATGCA+TGG | - | chr2_3:31149177-31149196 | None:intergenic | 35.0% | |
| CAAAGTTATCTTTCTCTCCT+TGG | - | chr2_3:31149481-31149500 | None:intergenic | 35.0% | |
| CAAGGAGAGAAAGATAACTT+TGG | + | chr2_3:31149479-31149498 | Msa0287840:CDS | 35.0% | |
| AGAGAAAGATAACTTTGGTG+TGG | + | chr2_3:31149484-31149503 | Msa0287840:CDS | 35.0% | |
| ! | GAGAAAGATAACTTTGGTGT+GGG | + | chr2_3:31149485-31149504 | Msa0287840:CDS | 35.0% |
| ! | TAACTTTGGTGTGGGAAAAA+CGG | + | chr2_3:31149493-31149512 | Msa0287840:CDS | 35.0% |
| TCACAAACAAACACAGTAGA+AGG | - | chr2_3:31149653-31149672 | None:intergenic | 35.0% | |
| !!! | GATGAGTTTTTAGCTTCCAT+GGG | - | chr2_3:31149756-31149775 | None:intergenic | 35.0% |
| !!! | TGATGAGTTTTTAGCTTCCA+TGG | - | chr2_3:31149757-31149776 | None:intergenic | 35.0% |
| TTGAATCTCCAGTAAAGAGC+AGG | - | chr2_3:31147358-31147377 | None:intergenic | 40.0% | |
| GACAGGGAACAAATTAGCAA+AGG | - | chr2_3:31147674-31147693 | None:intergenic | 40.0% | |
| GTAGTAGAGTGTACTCAAAG+AGG | + | chr2_3:31147773-31147792 | Msa0287840:intron | 40.0% | |
| !! | ACTCAAAGAGGTATTGTCGA+TGG | + | chr2_3:31147785-31147804 | Msa0287840:intron | 40.0% |
| ! | AGGTATTGTCGATGGATCTA+GGG | + | chr2_3:31147793-31147812 | Msa0287840:intron | 40.0% |
| AAGGTAGTGTGGAATGGTAA+AGG | + | chr2_3:31147856-31147875 | Msa0287840:intron | 40.0% | |
| !! | ATGGTAAAGGCTCTAGGAAA+AGG | + | chr2_3:31147869-31147888 | Msa0287840:intron | 40.0% |
| !! | ATATGGCATTGGCTAGTGTT+AGG | - | chr2_3:31147955-31147974 | None:intergenic | 40.0% |
| GAAGTAGTATATCATCGTCC+TGG | - | chr2_3:31148033-31148052 | None:intergenic | 40.0% | |
| GAGTCTGGAGAAGAAATAAG+TGG | + | chr2_3:31148091-31148110 | Msa0287840:intron | 40.0% | |
| ! | TAAGTGGGAAGTTTGAGACA+TGG | + | chr2_3:31148107-31148126 | Msa0287840:intron | 40.0% |
| ATTGAGGTATAGATGGTCTC+TGG | - | chr2_3:31148276-31148295 | None:intergenic | 40.0% | |
| AAGAAAAGAAGCTGAAACGG+AGG | + | chr2_3:31148371-31148390 | Msa0287840:intron | 40.0% | |
| ACAGGTCTTAGAGCTATGTT+GGG | - | chr2_3:31148457-31148476 | None:intergenic | 40.0% | |
| !! | TGAGACTGATTTTTGGATGG+TGG | + | chr2_3:31148486-31148505 | Msa0287840:intron | 40.0% |
| !!! | ACTGATTTTTGGATGGTGGA+AGG | + | chr2_3:31148490-31148509 | Msa0287840:intron | 40.0% |
| GTCCTGGTATTAAGAAAGAC+AGG | - | chr2_3:31148592-31148611 | None:intergenic | 40.0% | |
| AAGATGGCAGAATATCACCT+TGG | + | chr2_3:31148759-31148778 | Msa0287840:intron | 40.0% | |
| AGATGGCAGAATATCACCTT+GGG | + | chr2_3:31148760-31148779 | Msa0287840:intron | 40.0% | |
| ! | GTACTACCTACAGGTTTTCT+AGG | - | chr2_3:31148861-31148880 | None:intergenic | 40.0% |
| TTGCATTATATACCGTCGGT+TGG | + | chr2_3:31149067-31149086 | Msa0287840:intron | 40.0% | |
| TCACCATGCATATACTTGCT+AGG | + | chr2_3:31149171-31149190 | Msa0287840:intron | 40.0% | |
| ! | TTGTGCTGATCAACAGATTG+TGG | + | chr2_3:31149228-31149247 | Msa0287840:intron | 40.0% |
| ! | TGTGCTGATCAACAGATTGT+GGG | + | chr2_3:31149229-31149248 | Msa0287840:intron | 40.0% |
| ACGGCACATGAACATAACTT+TGG | + | chr2_3:31149350-31149369 | Msa0287840:CDS | 40.0% | |
| ! | AACTTTGGTGTGGGAAAAAC+GGG | + | chr2_3:31149494-31149513 | Msa0287840:CDS | 40.0% |
| ! | ATGCATTGGTATCATCTGTG+AGG | - | chr2_3:31149706-31149725 | None:intergenic | 40.0% |
| ATTACCACGATACTATCCCA+TGG | + | chr2_3:31149737-31149756 | Msa0287840:three_prime_UTR | 40.0% | |
| AGGAGGACAAGAAGAGAGTT+TGG | - | chr2_3:31147401-31147420 | None:intergenic | 45.0% | |
| AGTTGAAAGAGGGAAAGAGG+AGG | - | chr2_3:31147442-31147461 | None:intergenic | 45.0% | |
| CTAACCTGAGACAGAGAGAT+TGG | - | chr2_3:31147581-31147600 | None:intergenic | 45.0% | |
| !! | GAGGTATTGTCGATGGATCT+AGG | + | chr2_3:31147792-31147811 | Msa0287840:intron | 45.0% |
| TGTGGAATGGTAAAGGCTCT+AGG | + | chr2_3:31147863-31147882 | Msa0287840:intron | 45.0% | |
| ! | GAGTGTACTCAAAGAGGTGT+TGG | + | chr2_3:31147901-31147920 | Msa0287840:intron | 45.0% |
| AAAGAAGCTGAAACGGAGGA+AGG | + | chr2_3:31148375-31148394 | Msa0287840:intron | 45.0% | |
| CACAGGTCTTAGAGCTATGT+TGG | - | chr2_3:31148458-31148477 | None:intergenic | 45.0% | |
| TTGTGTGACAGAAACAGCGT+TGG | - | chr2_3:31148542-31148561 | None:intergenic | 45.0% | |
| GTGAGACCTAGAAAACCTGT+AGG | + | chr2_3:31148852-31148871 | Msa0287840:intron | 45.0% | |
| ! | GTGCTGATCAACAGATTGTG+GGG | + | chr2_3:31149230-31149249 | Msa0287840:intron | 45.0% |
| TGCTGATCAACAGATTGTGG+GGG | + | chr2_3:31149231-31149250 | Msa0287840:intron | 45.0% | |
| !! | CTCTTGTAGCTTTAGCTCCT+CGG | - | chr2_3:31149310-31149329 | None:intergenic | 45.0% |
| TTTGGCTGAAGCAAAACGAG+TGG | + | chr2_3:31149368-31149387 | Msa0287840:CDS | 45.0% | |
| TTGGCTGAAGCAAAACGAGT+GGG | + | chr2_3:31149369-31149388 | Msa0287840:CDS | 45.0% | |
| TCTCAATACCAGAGAGAAGC+AGG | + | chr2_3:31149393-31149412 | Msa0287840:CDS | 45.0% | |
| CTTTCTCTCCTTGGTTAGCA+TGG | - | chr2_3:31149472-31149491 | None:intergenic | 45.0% | |
| GAAAAACGGGCACGTCAAAT+GGG | + | chr2_3:31149507-31149526 | Msa0287840:CDS | 45.0% | |
| ACAGGACATGGGAAGGAAGT+GGG | + | chr2_3:31147076-31147095 | Msa0287840:five_prime_UTR | 50.0% | |
| TGTGTGGTCCTGCTCTTTAC+TGG | + | chr2_3:31147347-31147366 | Msa0287840:CDS | 50.0% | |
| GGACAGTGACAGATACAAGG+AGG | - | chr2_3:31147418-31147437 | None:intergenic | 50.0% | |
| GGAGGACAGTGACAGATACA+AGG | - | chr2_3:31147421-31147440 | None:intergenic | 50.0% | |
| TGAAAGAGGGAAAGAGGAGG+AGG | - | chr2_3:31147439-31147458 | None:intergenic | 50.0% | |
| ! | GCGAGTTGAAAGAGGGAAAG+AGG | - | chr2_3:31147445-31147464 | None:intergenic | 50.0% |
| ! | ACCAGGAGCGAGTTGAAAGA+GGG | - | chr2_3:31147452-31147471 | None:intergenic | 50.0% |
| ! | TACCAGGAGCGAGTTGAAAG+AGG | - | chr2_3:31147453-31147472 | None:intergenic | 50.0% |
| ! | AGAGAGATTGGCTAGTCCTG+TGG | - | chr2_3:31147569-31147588 | None:intergenic | 50.0% |
| CTAGCCAATCTCTCTGTCTC+AGG | + | chr2_3:31147574-31147593 | Msa0287840:CDS | 50.0% | |
| TGGCAGAATATCACCTTGGG+TGG | + | chr2_3:31148763-31148782 | Msa0287840:intron | 50.0% | |
| CTACTGGGTTAACCAACCGA+CGG | - | chr2_3:31149082-31149101 | None:intergenic | 50.0% | |
| TCCATCTCCTCCCTTAGTTC+CGG | - | chr2_3:31149264-31149283 | None:intergenic | 50.0% | |
| GGAGATGGAGAAGCAGTTTG+TGG | + | chr2_3:31149275-31149294 | Msa0287840:CDS | 50.0% | |
| !! | CAGTTTCTGAAGCGCACACA+CGG | + | chr2_3:31149331-31149350 | Msa0287840:CDS | 50.0% |
| CACATTTGCCTGCTTCTCTC+TGG | - | chr2_3:31149404-31149423 | None:intergenic | 50.0% | |
| CTCCTTGGTTAGCATGGCTT+CGG | - | chr2_3:31149466-31149485 | None:intergenic | 50.0% | |
| GGAAAAACGGGCACGTCAAA+TGG | + | chr2_3:31149506-31149525 | Msa0287840:CDS | 50.0% | |
| GCTTCCATGGGATAGTATCG+TGG | - | chr2_3:31149744-31149763 | None:intergenic | 50.0% | |
| GACAGGACATGGGAAGGAAG+TGG | + | chr2_3:31147075-31147094 | Msa0287840:five_prime_UTR | 55.0% | |
| TCCCTCTTTCAACTCGCTCC+TGG | + | chr2_3:31147448-31147467 | Msa0287840:CDS | 55.0% | |
| ! | CGTCGGTTGGTTAACCCAGT+AGG | + | chr2_3:31149080-31149099 | Msa0287840:intron | 55.0% |
| AGATTGTGGGGGTAACGACC+CGG | + | chr2_3:31149242-31149261 | Msa0287840:intron | 55.0% | |
| GGGTAACGACCCGGAACTAA+GGG | + | chr2_3:31149251-31149270 | Msa0287840:CDS | 55.0% | |
| TAACGACCCGGAACTAAGGG+AGG | + | chr2_3:31149254-31149273 | Msa0287840:CDS | 55.0% | |
| CCATCTCCTCCCTTAGTTCC+GGG | - | chr2_3:31149263-31149282 | None:intergenic | 55.0% | |
| GTTTGTGGACCTGCTAACCG+AGG | + | chr2_3:31149290-31149309 | Msa0287840:CDS | 55.0% | |
| ! | GCTTTAGCTCCTCGGTTAGC+AGG | - | chr2_3:31149302-31149321 | None:intergenic | 55.0% |
| TGCAACTGAAACGTGCGAGC+AGG | + | chr2_3:31149428-31149447 | Msa0287840:CDS | 55.0% | |
| !! | TGTGGTGCTGTGCAGAGTCC+TGG | - | chr2_3:31148608-31148627 | None:intergenic | 60.0% |
| GGGGTAACGACCCGGAACTA+AGG | + | chr2_3:31149250-31149269 | Msa0287840:CDS | 60.0% | |
| CCCGGAACTAAGGGAGGAGA+TGG | + | chr2_3:31149260-31149279 | Msa0287840:CDS | 60.0% | |
| GTGCGAGCAGGCAAGAGAAC+AGG | + | chr2_3:31149440-31149459 | Msa0287840:CDS | 60.0% | |
| GGCCGAAGCCATGCTAACCA+AGG | + | chr2_3:31149461-31149480 | Msa0287840:CDS | 60.0% | |
| AACGGGCACGTCAAATGGGC+TGG | + | chr2_3:31149511-31149530 | Msa0287840:CDS | 60.0% | |
| ! | ACGGGCACGTCAAATGGGCT+GGG | + | chr2_3:31149512-31149531 | Msa0287840:CDS | 60.0% |
| !! | GCACGTCAAATGGGCTGGGA+AGG | + | chr2_3:31149516-31149535 | Msa0287840:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 31147075 | 31149828 | 31147075 | ID=Msa0287840;Name=Msa0287840 |
| chr2_3 | mRNA | 31147075 | 31149828 | 31147075 | ID=Msa0287840-mRNA-1;Parent=Msa0287840;Name=Msa0287840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=175|1|1|1|1|1|3|283|181 |
| chr2_3 | exon | 31147075 | 31147469 | 31147075 | ID=Msa0287840-mRNA-1:exon:10626;Parent=Msa0287840-mRNA-1 |
| chr2_3 | exon | 31147572 | 31147595 | 31147572 | ID=Msa0287840-mRNA-1:exon:10627;Parent=Msa0287840-mRNA-1 |
| chr2_3 | exon | 31149244 | 31149828 | 31149244 | ID=Msa0287840-mRNA-1:exon:10628;Parent=Msa0287840-mRNA-1 |
| chr2_3 | five_prime_UTR | 31147075 | 31147249 | 31147075 | ID=Msa0287840-mRNA-1:five_prime_utr;Parent=Msa0287840-mRNA-1 |
| chr2_3 | CDS | 31147250 | 31147469 | 31147250 | ID=Msa0287840-mRNA-1:cds;Parent=Msa0287840-mRNA-1 |
| chr2_3 | CDS | 31147572 | 31147595 | 31147572 | ID=Msa0287840-mRNA-1:cds;Parent=Msa0287840-mRNA-1 |
| chr2_3 | CDS | 31149244 | 31149545 | 31149244 | ID=Msa0287840-mRNA-1:cds;Parent=Msa0287840-mRNA-1 |
| chr2_3 | three_prime_UTR | 31149546 | 31149828 | 31149546 | ID=Msa0287840-mRNA-1:three_prime_utr;Parent=Msa0287840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
