Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250270 | XP_003607178.1 | 84.585 | 253 | 14 | 2 | 1 | 228 | 78 | 330 | 1.89e-144 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250270 | sp|O22469|MSI3_ARATH | 52.918 | 257 | 92 | 3 | 1 | 228 | 81 | 337 | 4.69e-90 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250270 | G7JMD2 | 84.585 | 253 | 14 | 2 | 1 | 228 | 78 | 330 | 9.00e-145 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0250270 | Msa0877250 | 0.803861 | 2.848077e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250270 | MtrunA17_Chr4g0036951 | 84.585 | 253 | 14 | 2 | 1 | 228 | 78 | 330 | 1.73e-148 | 419 |
| Msa0250270 | MtrunA17_Chr4g0052291 | 47.826 | 230 | 92 | 2 | 27 | 228 | 120 | 349 | 2.55e-65 | 207 |
| Msa0250270 | MtrunA17_Chr2g0299271 | 25.984 | 254 | 136 | 5 | 27 | 228 | 153 | 406 | 2.20e-18 | 83.2 |
| Msa0250270 | MtrunA17_Chr8g0377441 | 27.500 | 240 | 131 | 8 | 27 | 227 | 157 | 392 | 3.55e-16 | 76.6 |
| Msa0250270 | MtrunA17_Chr2g0330271 | 23.755 | 261 | 136 | 6 | 27 | 225 | 112 | 371 | 2.53e-12 | 65.5 |
| Msa0250270 | MtrunA17_Chr5g0406931 | 25.103 | 243 | 134 | 9 | 27 | 227 | 144 | 380 | 2.89e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250270 | AT4G35050.1 | 52.918 | 257 | 92 | 3 | 1 | 228 | 81 | 337 | 4.76e-91 | 274 |
| Msa0250270 | AT2G16780.1 | 54.086 | 257 | 89 | 3 | 1 | 228 | 80 | 336 | 6.93e-90 | 271 |
| Msa0250270 | AT5G58230.1 | 47.391 | 230 | 93 | 2 | 27 | 228 | 120 | 349 | 1.57e-67 | 214 |
| Msa0250270 | AT2G19520.1 | 25.385 | 260 | 136 | 4 | 27 | 228 | 159 | 418 | 1.06e-17 | 81.6 |
| Msa0250270 | AT2G19540.1 | 27.386 | 241 | 132 | 6 | 27 | 227 | 154 | 391 | 1.50e-16 | 78.2 |
Find 51 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGAATAGTGAATGGATTT+TGG | 0.233972 | 2_2:+38570974 | Msa0250270:CDS |
| TAATGGTTTGGGACCTTAAC+AGG | 0.290916 | 2_2:+38571341 | Msa0250270:CDS |
| TTGCACAATGAGAATTTGTT+TGG | 0.292718 | 2_2:+38570270 | Msa0250270:CDS |
| CTCGCTGAATCCACTCTTCC+TGG | 0.301927 | 2_2:+38569641 | Msa0250270:CDS |
| ATGGGTTGAGATGGGTTTCC+AGG | 0.316148 | 2_2:-38569659 | None:intergenic |
| GCCAAAATCCATTCACTATT+CGG | 0.356489 | 2_2:-38570975 | None:intergenic |
| ACATCGGTCTCTTTGATTTA+CGG | 0.356527 | 2_2:+38571018 | Msa0250270:CDS |
| TGCTGCAAAGACTTGTAATT+CGG | 0.396364 | 2_2:+38569882 | Msa0250270:CDS |
| TTGTTGATGGTGAGGTGAAT+AGG | 0.399327 | 2_2:+38569827 | Msa0250270:CDS |
| ACTTAGAGGATTCTTGTTGA+TGG | 0.408751 | 2_2:+38569814 | Msa0250270:intron |
| TTCAGGATCTGTAGCGATGA+TGG | 0.413479 | 2_2:-38569678 | None:intergenic |
| TAGTGCTGATAGAATGCTAA+TGG | 0.413852 | 2_2:+38571324 | Msa0250270:CDS |
| CTGATAGAATGCTAATGGTT+TGG | 0.422416 | 2_2:+38571329 | Msa0250270:CDS |
| GCCAACACTCCCTCGTAGTT+AGG | 0.428460 | 2_2:-38571295 | None:intergenic |
| CTTTCAGTCCGAATAGTGAA+TGG | 0.429984 | 2_2:+38570967 | Msa0250270:CDS |
| GCGTAGAGATGAGGTATTCC+AGG | 0.432656 | 2_2:+38571261 | Msa0250270:intron |
| ATTTGCTTGTGGGATGTGTT+TGG | 0.433764 | 2_2:+38570051 | Msa0250270:CDS |
| AATGAGAATTTGTTTGGGTC+TGG | 0.436031 | 2_2:+38570276 | Msa0250270:CDS |
| TTTACTAAGAAGAGGGGAGA+GGG | 0.440661 | 2_2:+38569922 | Msa0250270:CDS |
| TGTTGATGGTGAGGTGAATA+GGG | 0.446071 | 2_2:+38569828 | Msa0250270:CDS |
| TGATGTTGTTCATGTTTATG+AGG | 0.446997 | 2_2:+38570095 | Msa0250270:CDS |
| TGCACAATGAGAATTTGTTT+GGG | 0.448123 | 2_2:+38570271 | Msa0250270:CDS |
| TGATAGAATGCTAATGGTTT+GGG | 0.448390 | 2_2:+38571330 | Msa0250270:CDS |
| AAGAAGGGTATGGGCTGTCT+TGG | 0.456214 | 2_2:+38569980 | Msa0250270:CDS |
| TGACACTTCAACCTAAAATC+AGG | 0.480136 | 2_2:-38569952 | None:intergenic |
| TAGGGCGCGGGCTATGCCAC+AGG | 0.481380 | 2_2:+38569846 | Msa0250270:CDS |
| AGTTAGGATCCCACTCTACC+TGG | 0.504077 | 2_2:-38571279 | None:intergenic |
| TGATCATAAGATTTGCTTGT+GGG | 0.509495 | 2_2:+38570041 | Msa0250270:CDS |
| TCAGGATCTGTAGCGATGAT+GGG | 0.514531 | 2_2:-38569677 | None:intergenic |
| GAGAATTTGTTTGGGTCTGG+TGG | 0.524998 | 2_2:+38570279 | Msa0250270:CDS |
| ATGAGGTATTCCAGGTAGAG+TGG | 0.529343 | 2_2:+38571269 | Msa0250270:CDS |
| AGATGGGTTTCCAGGAAGAG+TGG | 0.543120 | 2_2:-38569651 | None:intergenic |
| GGGTATGGGCTGTCTTGGAG+TGG | 0.547685 | 2_2:+38569985 | Msa0250270:CDS |
| ATGGTGAGGTGAATAGGGCG+CGG | 0.551485 | 2_2:+38569833 | Msa0250270:CDS |
| TCCTAACTACGAGGGAGTGT+TGG | 0.556346 | 2_2:+38571294 | Msa0250270:CDS |
| TAGCGATGATGGGTTGAGAT+GGG | 0.571740 | 2_2:-38569667 | None:intergenic |
| GAGGATTCTTGTTGATGGTG+AGG | 0.592301 | 2_2:+38569819 | Msa0250270:intron |
| TGGTGAGGTGAATAGGGCGC+GGG | 0.599718 | 2_2:+38569834 | Msa0250270:CDS |
| TGAGGTATTCCAGGTAGAGT+GGG | 0.604028 | 2_2:+38571270 | Msa0250270:CDS |
| TGCAAAGACTTGTAATTCGG+AGG | 0.610865 | 2_2:+38569885 | Msa0250270:CDS |
| TAAATCAAAGAGACCGATGT+CGG | 0.616345 | 2_2:-38571015 | None:intergenic |
| GTAGCGATGATGGGTTGAGA+TGG | 0.626064 | 2_2:-38569668 | None:intergenic |
| GCAACAACGTTCGCATCCTG+TGG | 0.626151 | 2_2:-38569862 | None:intergenic |
| GTGTGGTTGAAGATGTGTCT+TGG | 0.629529 | 2_2:+38570244 | Msa0250270:CDS |
| ATGATCATAAGATTTGCTTG+TGG | 0.642906 | 2_2:+38570040 | Msa0250270:CDS |
| TGGTGGAGATGACTACAAGT+TGG | 0.655984 | 2_2:+38570296 | Msa0250270:CDS |
| GCATCTTCAGACACCGACAT+CGG | 0.660753 | 2_2:+38571002 | Msa0250270:CDS |
| GTGTTAGGGACATGAAAGTG+TGG | 0.665723 | 2_2:+38570227 | Msa0250270:intron |
| TGGCTACTTAGAAAATGCAG+TGG | 0.707079 | 2_2:-38571053 | None:intergenic |
| GAGTGGGATCCTAACTACGA+GGG | 0.712828 | 2_2:+38571286 | Msa0250270:CDS |
| AGAGTGGGATCCTAACTACG+AGG | 0.760136 | 2_2:+38571285 | Msa0250270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATAAGAAATTTTGAAAT+TGG | + | chr2_2:38570868-38570887 | Msa0250270:intron | 10.0% |
| !!! | AATATAAGAAATTTTGAAAT+TGG | + | chr2_2:38570868-38570887 | Msa0250270:intron | 10.0% |
| !!! | TTTTTCTTGTTTTTGTTTTA+TGG | + | chr2_2:38569729-38569748 | Msa0250270:intron | 15.0% |
| !!! | TTTTCTTGTTTTTGTTTTAT+GGG | + | chr2_2:38569730-38569749 | Msa0250270:intron | 15.0% |
| !! | AATTATTGAGTTATTGAAAT+AGG | - | chr2_2:38570553-38570572 | None:intergenic | 15.0% |
| !! | GTTTAATATGATTGTTAATT+TGG | + | chr2_2:38570637-38570656 | Msa0250270:intron | 15.0% |
| !!! | AAAAATTGTTGTTTGATTTA+TGG | + | chr2_2:38570717-38570736 | Msa0250270:intron | 15.0% |
| !!! | TTTTTCTTGTTTTTGTTTTA+TGG | + | chr2_2:38569729-38569748 | Msa0250270:intron | 15.0% |
| !!! | TTTTCTTGTTTTTGTTTTAT+GGG | + | chr2_2:38569730-38569749 | Msa0250270:intron | 15.0% |
| !! | AATTATTGAGTTATTGAAAT+AGG | - | chr2_2:38570553-38570572 | None:intergenic | 15.0% |
| !! | GTTTAATATGATTGTTAATT+TGG | + | chr2_2:38570637-38570656 | Msa0250270:intron | 15.0% |
| !!! | AAAAATTGTTGTTTGATTTA+TGG | + | chr2_2:38570717-38570736 | Msa0250270:intron | 15.0% |
| !! | AGAAAAAAATCAAAAACCTT+GGG | - | chr2_2:38569716-38569735 | None:intergenic | 20.0% |
| !! | AAGAAAAAAATCAAAAACCT+TGG | - | chr2_2:38569717-38569736 | None:intergenic | 20.0% |
| !!! | TGTTTGTTGTTTGTTTTTAT+AGG | + | chr2_2:38569783-38569802 | Msa0250270:intron | 20.0% |
| !!! | ATTAGAATTGATTTGATGAT+TGG | + | chr2_2:38570123-38570142 | Msa0250270:intron | 20.0% |
| !!! | ATTTGCCTATTTTAAAAAAG+TGG | + | chr2_2:38570604-38570623 | Msa0250270:intron | 20.0% |
| !!! | TTTGCCTATTTTAAAAAAGT+GGG | + | chr2_2:38570605-38570624 | Msa0250270:intron | 20.0% |
| !!! | TTTTACATAGAAATAGTACT+TGG | - | chr2_2:38570698-38570717 | None:intergenic | 20.0% |
| !!! | TTAATTTTTATTGGTGTTCT+TGG | + | chr2_2:38570812-38570831 | Msa0250270:intron | 20.0% |
| !! | AGAAAAAAATCAAAAACCTT+GGG | - | chr2_2:38569716-38569735 | None:intergenic | 20.0% |
| !! | AAGAAAAAAATCAAAAACCT+TGG | - | chr2_2:38569717-38569736 | None:intergenic | 20.0% |
| !!! | TGTTTGTTGTTTGTTTTTAT+AGG | + | chr2_2:38569783-38569802 | Msa0250270:intron | 20.0% |
| !!! | ATTAGAATTGATTTGATGAT+TGG | + | chr2_2:38570123-38570142 | Msa0250270:intron | 20.0% |
| !!! | ATTTGCCTATTTTAAAAAAG+TGG | + | chr2_2:38570604-38570623 | Msa0250270:intron | 20.0% |
| !!! | TTTGCCTATTTTAAAAAAGT+GGG | + | chr2_2:38570605-38570624 | Msa0250270:intron | 20.0% |
| !!! | TTTTACATAGAAATAGTACT+TGG | - | chr2_2:38570698-38570717 | None:intergenic | 20.0% |
| !!! | TTAATTTTTATTGGTGTTCT+TGG | + | chr2_2:38570812-38570831 | Msa0250270:intron | 20.0% |
| !!! | TTGTTGTTTGTTTTTATAGG+TGG | + | chr2_2:38569786-38569805 | Msa0250270:intron | 25.0% |
| !!! | TGTTTGATTTTACTAAGAAG+AGG | + | chr2_2:38569914-38569933 | Msa0250270:CDS | 25.0% |
| !!! | GTTTGATTTTACTAAGAAGA+GGG | + | chr2_2:38569915-38569934 | Msa0250270:CDS | 25.0% |
| !!! | TTTGATTTTACTAAGAAGAG+GGG | + | chr2_2:38569916-38569935 | Msa0250270:CDS | 25.0% |
| ! | TGAAATTATTGTTGAAGTTG+TGG | + | chr2_2:38570197-38570216 | Msa0250270:intron | 25.0% |
| ! | TTACTTCATAATCTTTGTGT+AGG | + | chr2_2:38570387-38570406 | Msa0250270:intron | 25.0% |
| !!! | TGCATTTTTTTTTTGTTGAG+AGG | + | chr2_2:38570480-38570499 | Msa0250270:intron | 25.0% |
| !!! | GCATTTTTTTTTTGTTGAGA+GGG | + | chr2_2:38570481-38570500 | Msa0250270:intron | 25.0% |
| !!! | GAATCCCACTTTTTTAAAAT+AGG | - | chr2_2:38570612-38570631 | None:intergenic | 25.0% |
| !! | ATAGCCTTAGAACTTTATAA+GGG | - | chr2_2:38570755-38570774 | None:intergenic | 25.0% |
| ! | AACTAAACAATCATGTGTAA+TGG | + | chr2_2:38570904-38570923 | Msa0250270:intron | 25.0% |
| ! | ATAAAGAAAAACACACAACA+TGG | - | chr2_2:38571106-38571125 | None:intergenic | 25.0% |
| ! | TCAGTTATCACATACAAAAT+CGG | - | chr2_2:38571180-38571199 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTGTTTTTATAGG+TGG | + | chr2_2:38569786-38569805 | Msa0250270:intron | 25.0% |
| !!! | TGTTTGATTTTACTAAGAAG+AGG | + | chr2_2:38569914-38569933 | Msa0250270:CDS | 25.0% |
| !!! | GTTTGATTTTACTAAGAAGA+GGG | + | chr2_2:38569915-38569934 | Msa0250270:CDS | 25.0% |
| !!! | TTTGATTTTACTAAGAAGAG+GGG | + | chr2_2:38569916-38569935 | Msa0250270:CDS | 25.0% |
| ! | TGAAATTATTGTTGAAGTTG+TGG | + | chr2_2:38570197-38570216 | Msa0250270:intron | 25.0% |
| ! | TTACTTCATAATCTTTGTGT+AGG | + | chr2_2:38570387-38570406 | Msa0250270:intron | 25.0% |
| !!! | TGCATTTTTTTTTTGTTGAG+AGG | + | chr2_2:38570480-38570499 | Msa0250270:intron | 25.0% |
| !!! | GCATTTTTTTTTTGTTGAGA+GGG | + | chr2_2:38570481-38570500 | Msa0250270:intron | 25.0% |
| !!! | GAATCCCACTTTTTTAAAAT+AGG | - | chr2_2:38570612-38570631 | None:intergenic | 25.0% |
| !! | ATAGCCTTAGAACTTTATAA+GGG | - | chr2_2:38570755-38570774 | None:intergenic | 25.0% |
| ! | AACTAAACAATCATGTGTAA+TGG | + | chr2_2:38570904-38570923 | Msa0250270:intron | 25.0% |
| ! | ATAAAGAAAAACACACAACA+TGG | - | chr2_2:38571106-38571125 | None:intergenic | 25.0% |
| ! | TCAGTTATCACATACAAAAT+CGG | - | chr2_2:38571180-38571199 | None:intergenic | 25.0% |
| CAAAAACCTTGGGAAAAATA+GGG | - | chr2_2:38569706-38569725 | None:intergenic | 30.0% | |
| TCAAAAACCTTGGGAAAAAT+AGG | - | chr2_2:38569707-38569726 | None:intergenic | 30.0% | |
| ! | TTGAAGTGTCATGAAAAAGA+AGG | + | chr2_2:38569964-38569983 | Msa0250270:CDS | 30.0% |
| ! | TGAAGTGTCATGAAAAAGAA+GGG | + | chr2_2:38569965-38569984 | Msa0250270:CDS | 30.0% |
| ! | ATGATCATAAGATTTGCTTG+TGG | + | chr2_2:38570040-38570059 | Msa0250270:CDS | 30.0% |
| ! | TGATCATAAGATTTGCTTGT+GGG | + | chr2_2:38570041-38570060 | Msa0250270:CDS | 30.0% |
| TGATGTTGTTCATGTTTATG+AGG | + | chr2_2:38570095-38570114 | Msa0250270:CDS | 30.0% | |
| !! | ATTGATTTGATGATTGGTGT+TGG | + | chr2_2:38570129-38570148 | Msa0250270:intron | 30.0% |
| !!! | GTTATATTGGTTTTGTTGTG+AGG | + | chr2_2:38570155-38570174 | Msa0250270:intron | 30.0% |
| ! | TTGCACAATGAGAATTTGTT+TGG | + | chr2_2:38570270-38570289 | Msa0250270:CDS | 30.0% |
| ! | TGCACAATGAGAATTTGTTT+GGG | + | chr2_2:38570271-38570290 | Msa0250270:CDS | 30.0% |
| !! | ATGACTACAAGTTGGTAATT+TGG | + | chr2_2:38570304-38570323 | Msa0250270:intron | 30.0% |
| !! | TGACTACAAGTTGGTAATTT+GGG | + | chr2_2:38570305-38570324 | Msa0250270:intron | 30.0% |
| TTGATTTATGGCTAGTGAAA+AGG | + | chr2_2:38570729-38570748 | Msa0250270:intron | 30.0% | |
| ! | CATAGCCTTAGAACTTTATA+AGG | - | chr2_2:38570756-38570775 | None:intergenic | 30.0% |
| TAAGGCTATGTCACATATAT+CGG | + | chr2_2:38570766-38570785 | Msa0250270:intron | 30.0% | |
| TGTTCTTCATTACTGAAAGT+TGG | - | chr2_2:38570843-38570862 | None:intergenic | 30.0% | |
| ACATACAAAATCGGATCTAA+AGG | - | chr2_2:38571171-38571190 | None:intergenic | 30.0% | |
| AACTGATAAGTTCTTAGCTT+TGG | + | chr2_2:38571194-38571213 | Msa0250270:intron | 30.0% | |
| TGATAGAATGCTAATGGTTT+GGG | + | chr2_2:38571330-38571349 | Msa0250270:CDS | 30.0% | |
| CAAAAACCTTGGGAAAAATA+GGG | - | chr2_2:38569706-38569725 | None:intergenic | 30.0% | |
| TCAAAAACCTTGGGAAAAAT+AGG | - | chr2_2:38569707-38569726 | None:intergenic | 30.0% | |
| ! | TTGAAGTGTCATGAAAAAGA+AGG | + | chr2_2:38569964-38569983 | Msa0250270:CDS | 30.0% |
| ! | TGAAGTGTCATGAAAAAGAA+GGG | + | chr2_2:38569965-38569984 | Msa0250270:CDS | 30.0% |
| ! | ATGATCATAAGATTTGCTTG+TGG | + | chr2_2:38570040-38570059 | Msa0250270:CDS | 30.0% |
| ! | TGATCATAAGATTTGCTTGT+GGG | + | chr2_2:38570041-38570060 | Msa0250270:CDS | 30.0% |
| TGATGTTGTTCATGTTTATG+AGG | + | chr2_2:38570095-38570114 | Msa0250270:CDS | 30.0% | |
| !! | ATTGATTTGATGATTGGTGT+TGG | + | chr2_2:38570129-38570148 | Msa0250270:intron | 30.0% |
| !!! | GTTATATTGGTTTTGTTGTG+AGG | + | chr2_2:38570155-38570174 | Msa0250270:intron | 30.0% |
| ! | TTGCACAATGAGAATTTGTT+TGG | + | chr2_2:38570270-38570289 | Msa0250270:CDS | 30.0% |
| ! | TGCACAATGAGAATTTGTTT+GGG | + | chr2_2:38570271-38570290 | Msa0250270:CDS | 30.0% |
| !! | ATGACTACAAGTTGGTAATT+TGG | + | chr2_2:38570304-38570323 | Msa0250270:intron | 30.0% |
| !! | TGACTACAAGTTGGTAATTT+GGG | + | chr2_2:38570305-38570324 | Msa0250270:intron | 30.0% |
| TTGATTTATGGCTAGTGAAA+AGG | + | chr2_2:38570729-38570748 | Msa0250270:intron | 30.0% | |
| ! | CATAGCCTTAGAACTTTATA+AGG | - | chr2_2:38570756-38570775 | None:intergenic | 30.0% |
| TAAGGCTATGTCACATATAT+CGG | + | chr2_2:38570766-38570785 | Msa0250270:intron | 30.0% | |
| TGTTCTTCATTACTGAAAGT+TGG | - | chr2_2:38570843-38570862 | None:intergenic | 30.0% | |
| ACATACAAAATCGGATCTAA+AGG | - | chr2_2:38571171-38571190 | None:intergenic | 30.0% | |
| AACTGATAAGTTCTTAGCTT+TGG | + | chr2_2:38571194-38571213 | Msa0250270:intron | 30.0% | |
| TGATAGAATGCTAATGGTTT+GGG | + | chr2_2:38571330-38571349 | Msa0250270:CDS | 30.0% | |
| ! | TTGGGAAAAATAGGGTTTTC+AGG | - | chr2_2:38569698-38569717 | None:intergenic | 35.0% |
| !! | TGAAAACCCTATTTTTCCCA+AGG | + | chr2_2:38569697-38569716 | Msa0250270:CDS | 35.0% |
| CATGCATTTCATCAAACAGT+TGG | - | chr2_2:38569758-38569777 | None:intergenic | 35.0% | |
| TATAGGTGGAGATTACTTAG+AGG | + | chr2_2:38569800-38569819 | Msa0250270:intron | 35.0% | |
| ACTTAGAGGATTCTTGTTGA+TGG | + | chr2_2:38569814-38569833 | Msa0250270:intron | 35.0% | |
| TGCTGCAAAGACTTGTAATT+CGG | + | chr2_2:38569882-38569901 | Msa0250270:CDS | 35.0% | |
| TGACACTTCAACCTAAAATC+AGG | - | chr2_2:38569955-38569974 | None:intergenic | 35.0% | |
| TGTCATGAAAAAGAAGGGTA+TGG | + | chr2_2:38569970-38569989 | Msa0250270:CDS | 35.0% | |
| ! | GTCATGAAAAAGAAGGGTAT+GGG | + | chr2_2:38569971-38569990 | Msa0250270:CDS | 35.0% |
| !! | TTGGTGTTGGTGTGTTATAT+TGG | + | chr2_2:38570142-38570161 | Msa0250270:intron | 35.0% |
| ! | AGTTGTGGTTTTTGTGTGTT+AGG | + | chr2_2:38570212-38570231 | Msa0250270:intron | 35.0% |
| ! | GTTGTGGTTTTTGTGTGTTA+GGG | + | chr2_2:38570213-38570232 | Msa0250270:intron | 35.0% |
| ! | AATGAGAATTTGTTTGGGTC+TGG | + | chr2_2:38570276-38570295 | Msa0250270:CDS | 35.0% |
| !! | AGTTGGTAATTTGGGATTTG+CGG | + | chr2_2:38570313-38570332 | Msa0250270:intron | 35.0% |
| ATCATTACCTCCCTTTAATG+GGG | - | chr2_2:38570366-38570385 | None:intergenic | 35.0% | |
| CATCATTACCTCCCTTTAAT+GGG | - | chr2_2:38570367-38570386 | None:intergenic | 35.0% | |
| ACATCATTACCTCCCTTTAA+TGG | - | chr2_2:38570368-38570387 | None:intergenic | 35.0% | |
| TCATAATCTTTGTGTAGGCT+AGG | + | chr2_2:38570392-38570411 | Msa0250270:intron | 35.0% | |
| ATTTGGATGCATCAGTTATC+AGG | + | chr2_2:38570654-38570673 | Msa0250270:intron | 35.0% | |
| AAGGCCCTTATAAAGTTCTA+AGG | + | chr2_2:38570748-38570767 | Msa0250270:intron | 35.0% | |
| !!! | TGCTCTTTTTTGTCTTGAAC+AGG | + | chr2_2:38570932-38570951 | Msa0250270:intron | 35.0% |
| !! | TCCGAATAGTGAATGGATTT+TGG | + | chr2_2:38570974-38570993 | Msa0250270:CDS | 35.0% |
| GCCAAAATCCATTCACTATT+CGG | - | chr2_2:38570978-38570997 | None:intergenic | 35.0% | |
| TAAATCAAAGAGACCGATGT+CGG | - | chr2_2:38571018-38571037 | None:intergenic | 35.0% | |
| ! | ACATCGGTCTCTTTGATTTA+CGG | + | chr2_2:38571018-38571037 | Msa0250270:CDS | 35.0% |
| AAACCAAAGACGTGAGTAAA+AGG | - | chr2_2:38571231-38571250 | None:intergenic | 35.0% | |
| !! | TTTTTCAATGCGTAGAGATG+AGG | + | chr2_2:38571252-38571271 | Msa0250270:intron | 35.0% |
| !! | TAGTGCTGATAGAATGCTAA+TGG | + | chr2_2:38571324-38571343 | Msa0250270:CDS | 35.0% |
| CTGATAGAATGCTAATGGTT+TGG | + | chr2_2:38571329-38571348 | Msa0250270:CDS | 35.0% | |
| ! | TTGGGAAAAATAGGGTTTTC+AGG | - | chr2_2:38569698-38569717 | None:intergenic | 35.0% |
| !! | TGAAAACCCTATTTTTCCCA+AGG | + | chr2_2:38569697-38569716 | Msa0250270:CDS | 35.0% |
| CATGCATTTCATCAAACAGT+TGG | - | chr2_2:38569758-38569777 | None:intergenic | 35.0% | |
| TATAGGTGGAGATTACTTAG+AGG | + | chr2_2:38569800-38569819 | Msa0250270:intron | 35.0% | |
| ACTTAGAGGATTCTTGTTGA+TGG | + | chr2_2:38569814-38569833 | Msa0250270:intron | 35.0% | |
| TGCTGCAAAGACTTGTAATT+CGG | + | chr2_2:38569882-38569901 | Msa0250270:CDS | 35.0% | |
| TGACACTTCAACCTAAAATC+AGG | - | chr2_2:38569955-38569974 | None:intergenic | 35.0% | |
| TGTCATGAAAAAGAAGGGTA+TGG | + | chr2_2:38569970-38569989 | Msa0250270:CDS | 35.0% | |
| ! | GTCATGAAAAAGAAGGGTAT+GGG | + | chr2_2:38569971-38569990 | Msa0250270:CDS | 35.0% |
| !! | TTGGTGTTGGTGTGTTATAT+TGG | + | chr2_2:38570142-38570161 | Msa0250270:intron | 35.0% |
| ! | AGTTGTGGTTTTTGTGTGTT+AGG | + | chr2_2:38570212-38570231 | Msa0250270:intron | 35.0% |
| ! | GTTGTGGTTTTTGTGTGTTA+GGG | + | chr2_2:38570213-38570232 | Msa0250270:intron | 35.0% |
| ! | AATGAGAATTTGTTTGGGTC+TGG | + | chr2_2:38570276-38570295 | Msa0250270:CDS | 35.0% |
| !! | AGTTGGTAATTTGGGATTTG+CGG | + | chr2_2:38570313-38570332 | Msa0250270:intron | 35.0% |
| ATCATTACCTCCCTTTAATG+GGG | - | chr2_2:38570366-38570385 | None:intergenic | 35.0% | |
| CATCATTACCTCCCTTTAAT+GGG | - | chr2_2:38570367-38570386 | None:intergenic | 35.0% | |
| ACATCATTACCTCCCTTTAA+TGG | - | chr2_2:38570368-38570387 | None:intergenic | 35.0% | |
| TCATAATCTTTGTGTAGGCT+AGG | + | chr2_2:38570392-38570411 | Msa0250270:intron | 35.0% | |
| ATTTGGATGCATCAGTTATC+AGG | + | chr2_2:38570654-38570673 | Msa0250270:intron | 35.0% | |
| AAGGCCCTTATAAAGTTCTA+AGG | + | chr2_2:38570748-38570767 | Msa0250270:intron | 35.0% | |
| !!! | TGCTCTTTTTTGTCTTGAAC+AGG | + | chr2_2:38570932-38570951 | Msa0250270:intron | 35.0% |
| !! | TCCGAATAGTGAATGGATTT+TGG | + | chr2_2:38570974-38570993 | Msa0250270:CDS | 35.0% |
| GCCAAAATCCATTCACTATT+CGG | - | chr2_2:38570978-38570997 | None:intergenic | 35.0% | |
| TAAATCAAAGAGACCGATGT+CGG | - | chr2_2:38571018-38571037 | None:intergenic | 35.0% | |
| ! | ACATCGGTCTCTTTGATTTA+CGG | + | chr2_2:38571018-38571037 | Msa0250270:CDS | 35.0% |
| AAACCAAAGACGTGAGTAAA+AGG | - | chr2_2:38571231-38571250 | None:intergenic | 35.0% | |
| !! | TTTTTCAATGCGTAGAGATG+AGG | + | chr2_2:38571252-38571271 | Msa0250270:intron | 35.0% |
| !! | TAGTGCTGATAGAATGCTAA+TGG | + | chr2_2:38571324-38571343 | Msa0250270:CDS | 35.0% |
| CTGATAGAATGCTAATGGTT+TGG | + | chr2_2:38571329-38571348 | Msa0250270:CDS | 35.0% | |
| !! | TTGTTGATGGTGAGGTGAAT+AGG | + | chr2_2:38569827-38569846 | Msa0250270:CDS | 40.0% |
| !! | TGTTGATGGTGAGGTGAATA+GGG | + | chr2_2:38569828-38569847 | Msa0250270:CDS | 40.0% |
| TGCAAAGACTTGTAATTCGG+AGG | + | chr2_2:38569885-38569904 | Msa0250270:CDS | 40.0% | |
| ! | TTTTACTAAGAAGAGGGGAG+AGG | + | chr2_2:38569921-38569940 | Msa0250270:CDS | 40.0% |
| TTTACTAAGAAGAGGGGAGA+GGG | + | chr2_2:38569922-38569941 | Msa0250270:CDS | 40.0% | |
| ! | AGGGATGTGATCCTGATTTT+AGG | + | chr2_2:38569941-38569960 | Msa0250270:CDS | 40.0% |
| ATTTGCTTGTGGGATGTGTT+TGG | + | chr2_2:38570051-38570070 | Msa0250270:CDS | 40.0% | |
| ATTCACTCACACCCCATTAA+AGG | + | chr2_2:38570352-38570371 | Msa0250270:intron | 40.0% | |
| TTCACTCACACCCCATTAAA+GGG | + | chr2_2:38570353-38570372 | Msa0250270:intron | 40.0% | |
| CTTTCAGTCCGAATAGTGAA+TGG | + | chr2_2:38570967-38570986 | Msa0250270:CDS | 40.0% | |
| TGGCTACTTAGAAAATGCAG+TGG | - | chr2_2:38571056-38571075 | None:intergenic | 40.0% | |
| CATGGATCTGTGATAGATGA+AGG | - | chr2_2:38571088-38571107 | None:intergenic | 40.0% | |
| ! | TAATGGTTTGGGACCTTAAC+AGG | + | chr2_2:38571341-38571360 | Msa0250270:CDS | 40.0% |
| !! | TTGTTGATGGTGAGGTGAAT+AGG | + | chr2_2:38569827-38569846 | Msa0250270:CDS | 40.0% |
| !! | TGTTGATGGTGAGGTGAATA+GGG | + | chr2_2:38569828-38569847 | Msa0250270:CDS | 40.0% |
| TGCAAAGACTTGTAATTCGG+AGG | + | chr2_2:38569885-38569904 | Msa0250270:CDS | 40.0% | |
| ! | TTTTACTAAGAAGAGGGGAG+AGG | + | chr2_2:38569921-38569940 | Msa0250270:CDS | 40.0% |
| TTTACTAAGAAGAGGGGAGA+GGG | + | chr2_2:38569922-38569941 | Msa0250270:CDS | 40.0% | |
| ! | AGGGATGTGATCCTGATTTT+AGG | + | chr2_2:38569941-38569960 | Msa0250270:CDS | 40.0% |
| ATTTGCTTGTGGGATGTGTT+TGG | + | chr2_2:38570051-38570070 | Msa0250270:CDS | 40.0% | |
| ATTCACTCACACCCCATTAA+AGG | + | chr2_2:38570352-38570371 | Msa0250270:intron | 40.0% | |
| TTCACTCACACCCCATTAAA+GGG | + | chr2_2:38570353-38570372 | Msa0250270:intron | 40.0% | |
| CTTTCAGTCCGAATAGTGAA+TGG | + | chr2_2:38570967-38570986 | Msa0250270:CDS | 40.0% | |
| TGGCTACTTAGAAAATGCAG+TGG | - | chr2_2:38571056-38571075 | None:intergenic | 40.0% | |
| CATGGATCTGTGATAGATGA+AGG | - | chr2_2:38571088-38571107 | None:intergenic | 40.0% | |
| ! | TAATGGTTTGGGACCTTAAC+AGG | + | chr2_2:38571341-38571360 | Msa0250270:CDS | 40.0% |
| !! | TAGCGATGATGGGTTGAGAT+GGG | - | chr2_2:38569670-38569689 | None:intergenic | 45.0% |
| TCAGGATCTGTAGCGATGAT+GGG | - | chr2_2:38569680-38569699 | None:intergenic | 45.0% | |
| TTCAGGATCTGTAGCGATGA+TGG | - | chr2_2:38569681-38569700 | None:intergenic | 45.0% | |
| !! | GAGGATTCTTGTTGATGGTG+AGG | + | chr2_2:38569819-38569838 | Msa0250270:intron | 45.0% |
| GTGTTAGGGACATGAAAGTG+TGG | + | chr2_2:38570227-38570246 | Msa0250270:intron | 45.0% | |
| GTGTGGTTGAAGATGTGTCT+TGG | + | chr2_2:38570244-38570263 | Msa0250270:CDS | 45.0% | |
| ! | GAGAATTTGTTTGGGTCTGG+TGG | + | chr2_2:38570279-38570298 | Msa0250270:CDS | 45.0% |
| TGGTGGAGATGACTACAAGT+TGG | + | chr2_2:38570296-38570315 | Msa0250270:CDS | 45.0% | |
| ATGGGGTGTGAGTGAATGAT+GGG | - | chr2_2:38570349-38570368 | None:intergenic | 45.0% | |
| AATGGGGTGTGAGTGAATGA+TGG | - | chr2_2:38570350-38570369 | None:intergenic | 45.0% | |
| ATAGATGAAGGTCGTACGTG+TGG | - | chr2_2:38571076-38571095 | None:intergenic | 45.0% | |
| ! | AAGACGTGAGTAAAAGGCAC+TGG | - | chr2_2:38571225-38571244 | None:intergenic | 45.0% |
| ! | GTGCCTTTTACTCACGTCTT+TGG | + | chr2_2:38571225-38571244 | Msa0250270:intron | 45.0% |
| ! | ATGAGGTATTCCAGGTAGAG+TGG | + | chr2_2:38571269-38571288 | Msa0250270:CDS | 45.0% |
| ! | TGAGGTATTCCAGGTAGAGT+GGG | + | chr2_2:38571270-38571289 | Msa0250270:CDS | 45.0% |
| !! | TAGCGATGATGGGTTGAGAT+GGG | - | chr2_2:38569670-38569689 | None:intergenic | 45.0% |
| TCAGGATCTGTAGCGATGAT+GGG | - | chr2_2:38569680-38569699 | None:intergenic | 45.0% | |
| TTCAGGATCTGTAGCGATGA+TGG | - | chr2_2:38569681-38569700 | None:intergenic | 45.0% | |
| !! | GAGGATTCTTGTTGATGGTG+AGG | + | chr2_2:38569819-38569838 | Msa0250270:intron | 45.0% |
| GTGTTAGGGACATGAAAGTG+TGG | + | chr2_2:38570227-38570246 | Msa0250270:intron | 45.0% | |
| GTGTGGTTGAAGATGTGTCT+TGG | + | chr2_2:38570244-38570263 | Msa0250270:CDS | 45.0% | |
| ! | GAGAATTTGTTTGGGTCTGG+TGG | + | chr2_2:38570279-38570298 | Msa0250270:CDS | 45.0% |
| TGGTGGAGATGACTACAAGT+TGG | + | chr2_2:38570296-38570315 | Msa0250270:CDS | 45.0% | |
| ATGGGGTGTGAGTGAATGAT+GGG | - | chr2_2:38570349-38570368 | None:intergenic | 45.0% | |
| AATGGGGTGTGAGTGAATGA+TGG | - | chr2_2:38570350-38570369 | None:intergenic | 45.0% | |
| ATAGATGAAGGTCGTACGTG+TGG | - | chr2_2:38571076-38571095 | None:intergenic | 45.0% | |
| ! | AAGACGTGAGTAAAAGGCAC+TGG | - | chr2_2:38571225-38571244 | None:intergenic | 45.0% |
| ! | GTGCCTTTTACTCACGTCTT+TGG | + | chr2_2:38571225-38571244 | Msa0250270:intron | 45.0% |
| ! | ATGAGGTATTCCAGGTAGAG+TGG | + | chr2_2:38571269-38571288 | Msa0250270:CDS | 45.0% |
| ! | TGAGGTATTCCAGGTAGAGT+GGG | + | chr2_2:38571270-38571289 | Msa0250270:CDS | 45.0% |
| !!! | ATACATAAATTAATTTTTAT+TGG | + | chr2_2:38570803-38570822 | Msa0250270:intron | 5.0% |
| !!! | ATACATAAATTAATTTTTAT+TGG | + | chr2_2:38570803-38570822 | Msa0250270:intron | 5.0% |
| ! | AGATGGGTTTCCAGGAAGAG+TGG | - | chr2_2:38569654-38569673 | None:intergenic | 50.0% |
| ! | ATGGGTTGAGATGGGTTTCC+AGG | - | chr2_2:38569662-38569681 | None:intergenic | 50.0% |
| !! | GTAGCGATGATGGGTTGAGA+TGG | - | chr2_2:38569671-38569690 | None:intergenic | 50.0% |
| ! | AAGAAGGGTATGGGCTGTCT+TGG | + | chr2_2:38569980-38569999 | Msa0250270:CDS | 50.0% |
| ACTCACACCCCATTAAAGGG+AGG | + | chr2_2:38570356-38570375 | Msa0250270:intron | 50.0% | |
| GCATCTTCAGACACCGACAT+CGG | + | chr2_2:38571002-38571021 | Msa0250270:CDS | 50.0% | |
| ! | GCGTAGAGATGAGGTATTCC+AGG | + | chr2_2:38571261-38571280 | Msa0250270:intron | 50.0% |
| AGTTAGGATCCCACTCTACC+TGG | - | chr2_2:38571282-38571301 | None:intergenic | 50.0% | |
| AGAGTGGGATCCTAACTACG+AGG | + | chr2_2:38571285-38571304 | Msa0250270:CDS | 50.0% | |
| GAGTGGGATCCTAACTACGA+GGG | + | chr2_2:38571286-38571305 | Msa0250270:CDS | 50.0% | |
| ! | TCCTAACTACGAGGGAGTGT+TGG | + | chr2_2:38571294-38571313 | Msa0250270:CDS | 50.0% |
| ! | AGATGGGTTTCCAGGAAGAG+TGG | - | chr2_2:38569654-38569673 | None:intergenic | 50.0% |
| ! | ATGGGTTGAGATGGGTTTCC+AGG | - | chr2_2:38569662-38569681 | None:intergenic | 50.0% |
| !! | GTAGCGATGATGGGTTGAGA+TGG | - | chr2_2:38569671-38569690 | None:intergenic | 50.0% |
| ! | AAGAAGGGTATGGGCTGTCT+TGG | + | chr2_2:38569980-38569999 | Msa0250270:CDS | 50.0% |
| ACTCACACCCCATTAAAGGG+AGG | + | chr2_2:38570356-38570375 | Msa0250270:intron | 50.0% | |
| GCATCTTCAGACACCGACAT+CGG | + | chr2_2:38571002-38571021 | Msa0250270:CDS | 50.0% | |
| ! | GCGTAGAGATGAGGTATTCC+AGG | + | chr2_2:38571261-38571280 | Msa0250270:intron | 50.0% |
| AGTTAGGATCCCACTCTACC+TGG | - | chr2_2:38571282-38571301 | None:intergenic | 50.0% | |
| AGAGTGGGATCCTAACTACG+AGG | + | chr2_2:38571285-38571304 | Msa0250270:CDS | 50.0% | |
| GAGTGGGATCCTAACTACGA+GGG | + | chr2_2:38571286-38571305 | Msa0250270:CDS | 50.0% | |
| ! | TCCTAACTACGAGGGAGTGT+TGG | + | chr2_2:38571294-38571313 | Msa0250270:CDS | 50.0% |
| CTCGCTGAATCCACTCTTCC+TGG | + | chr2_2:38569641-38569660 | Msa0250270:CDS | 55.0% | |
| ATGGTGAGGTGAATAGGGCG+CGG | + | chr2_2:38569833-38569852 | Msa0250270:CDS | 55.0% | |
| GCAACAACGTTCGCATCCTG+TGG | - | chr2_2:38569865-38569884 | None:intergenic | 55.0% | |
| GCCAACACTCCCTCGTAGTT+AGG | - | chr2_2:38571298-38571317 | None:intergenic | 55.0% | |
| CTCGCTGAATCCACTCTTCC+TGG | + | chr2_2:38569641-38569660 | Msa0250270:CDS | 55.0% | |
| ATGGTGAGGTGAATAGGGCG+CGG | + | chr2_2:38569833-38569852 | Msa0250270:CDS | 55.0% | |
| GCAACAACGTTCGCATCCTG+TGG | - | chr2_2:38569865-38569884 | None:intergenic | 55.0% | |
| GCCAACACTCCCTCGTAGTT+AGG | - | chr2_2:38571298-38571317 | None:intergenic | 55.0% | |
| TGGTGAGGTGAATAGGGCGC+GGG | + | chr2_2:38569834-38569853 | Msa0250270:CDS | 60.0% | |
| ! | GGGTATGGGCTGTCTTGGAG+TGG | + | chr2_2:38569985-38570004 | Msa0250270:CDS | 60.0% |
| TGGTGAGGTGAATAGGGCGC+GGG | + | chr2_2:38569834-38569853 | Msa0250270:CDS | 60.0% | |
| ! | GGGTATGGGCTGTCTTGGAG+TGG | + | chr2_2:38569985-38570004 | Msa0250270:CDS | 60.0% |
| ! | TAGGGCGCGGGCTATGCCAC+AGG | + | chr2_2:38569846-38569865 | Msa0250270:CDS | 70.0% |
| ! | TAGGGCGCGGGCTATGCCAC+AGG | + | chr2_2:38569846-38569865 | Msa0250270:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 38569638 | 38571366 | 38569638 | ID=Msa0250270;Name=Msa0250270 |
| chr2_2 | mRNA | 38569638 | 38571366 | 38569638 | ID=Msa0250270-mRNA-1;Parent=Msa0250270;Name=Msa0250270-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|5|0|228 |
| chr2_2 | exon | 38569638 | 38569718 | 38569638 | ID=Msa0250270-mRNA-1:exon:12058;Parent=Msa0250270-mRNA-1 |
| chr2_2 | exon | 38569820 | 38570116 | 38569820 | ID=Msa0250270-mRNA-1:exon:12059;Parent=Msa0250270-mRNA-1 |
| chr2_2 | exon | 38570234 | 38570317 | 38570234 | ID=Msa0250270-mRNA-1:exon:12060;Parent=Msa0250270-mRNA-1 |
| chr2_2 | exon | 38570954 | 38571078 | 38570954 | ID=Msa0250270-mRNA-1:exon:12061;Parent=Msa0250270-mRNA-1 |
| chr2_2 | exon | 38571267 | 38571366 | 38571267 | ID=Msa0250270-mRNA-1:exon:12062;Parent=Msa0250270-mRNA-1 |
| chr2_2 | CDS | 38569638 | 38569718 | 38569638 | ID=Msa0250270-mRNA-1:cds;Parent=Msa0250270-mRNA-1 |
| chr2_2 | CDS | 38569820 | 38570116 | 38569820 | ID=Msa0250270-mRNA-1:cds;Parent=Msa0250270-mRNA-1 |
| chr2_2 | CDS | 38570234 | 38570317 | 38570234 | ID=Msa0250270-mRNA-1:cds;Parent=Msa0250270-mRNA-1 |
| chr2_2 | CDS | 38570954 | 38571078 | 38570954 | ID=Msa0250270-mRNA-1:cds;Parent=Msa0250270-mRNA-1 |
| chr2_2 | CDS | 38571267 | 38571366 | 38571267 | ID=Msa0250270-mRNA-1:cds;Parent=Msa0250270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
