Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250720 | ADI50270.1 | 95.882 | 340 | 2 | 1 | 1 | 328 | 1 | 340 | 0.0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250720 | sp|P46665|HAT14_ARATH | 49.693 | 326 | 133 | 8 | 1 | 310 | 1 | 311 | 3.98e-84 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250720 | D9I5T5 | 95.882 | 340 | 2 | 1 | 1 | 328 | 1 | 340 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0250720 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0250720 | Msa1343030 | 0.830218 | 3.323329e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250720 | MtrunA17_Chr2g0308611 | 91.843 | 331 | 10 | 4 | 1 | 317 | 1 | 328 | 0.0 | 538 |
| Msa0250720 | MtrunA17_Chr1g0175651 | 52.212 | 339 | 79 | 13 | 1 | 315 | 1 | 280 | 7.22e-83 | 253 |
| Msa0250720 | MtrunA17_Chr7g0258831 | 51.090 | 321 | 90 | 10 | 1 | 302 | 1 | 273 | 1.34e-82 | 252 |
| Msa0250720 | MtrunA17_Chr4g0055851 | 55.777 | 251 | 72 | 6 | 75 | 313 | 22 | 245 | 9.06e-73 | 226 |
| Msa0250720 | MtrunA17_Chr5g0399491 | 61.502 | 213 | 47 | 8 | 111 | 312 | 72 | 260 | 1.10e-69 | 219 |
| Msa0250720 | MtrunA17_Chr4g0054421 | 76.119 | 134 | 29 | 1 | 168 | 301 | 109 | 239 | 3.33e-67 | 212 |
| Msa0250720 | MtrunA17_Chr5g0400781 | 63.462 | 156 | 50 | 2 | 175 | 327 | 113 | 264 | 2.22e-61 | 197 |
| Msa0250720 | MtrunA17_Chr8g0335131 | 57.277 | 213 | 65 | 4 | 102 | 300 | 58 | 258 | 3.89e-61 | 197 |
| Msa0250720 | MtrunA17_Chr1g0151971 | 63.433 | 134 | 42 | 2 | 171 | 302 | 117 | 245 | 4.44e-53 | 176 |
| Msa0250720 | MtrunA17_Chr4g0044091 | 66.129 | 124 | 35 | 2 | 184 | 300 | 59 | 182 | 3.30e-49 | 163 |
| Msa0250720 | MtrunA17_Chr3g0135331 | 66.667 | 129 | 39 | 2 | 175 | 303 | 134 | 258 | 1.32e-44 | 154 |
| Msa0250720 | MtrunA17_Chr2g0299031 | 54.545 | 132 | 57 | 2 | 189 | 318 | 82 | 212 | 4.61e-38 | 134 |
| Msa0250720 | MtrunA17_Chr4g0071411 | 51.799 | 139 | 52 | 3 | 191 | 326 | 90 | 216 | 6.75e-35 | 126 |
| Msa0250720 | MtrunA17_Chr7g0217111 | 45.946 | 111 | 55 | 3 | 175 | 281 | 67 | 176 | 1.35e-18 | 84.3 |
| Msa0250720 | MtrunA17_Chr6g0450991 | 42.105 | 114 | 66 | 0 | 189 | 302 | 67 | 180 | 1.81e-18 | 84.0 |
| Msa0250720 | MtrunA17_Chr6g0453021 | 41.085 | 129 | 51 | 2 | 154 | 275 | 79 | 189 | 2.25e-18 | 83.6 |
| Msa0250720 | MtrunA17_Chr4g0060031 | 44.355 | 124 | 63 | 2 | 159 | 276 | 59 | 182 | 2.40e-18 | 84.3 |
| Msa0250720 | MtrunA17_Chr5g0415941 | 35.196 | 179 | 102 | 5 | 106 | 275 | 7 | 180 | 8.65e-18 | 82.8 |
| Msa0250720 | MtrunA17_Chr7g0265521 | 35.862 | 145 | 91 | 2 | 183 | 325 | 57 | 201 | 9.08e-18 | 81.3 |
| Msa0250720 | MtrunA17_Chr5g0416391 | 40.152 | 132 | 74 | 2 | 145 | 276 | 38 | 164 | 1.55e-17 | 81.3 |
| Msa0250720 | MtrunA17_Chr8g0362151 | 38.411 | 151 | 73 | 4 | 139 | 282 | 37 | 174 | 1.75e-17 | 81.3 |
| Msa0250720 | MtrunA17_Chr3g0119291 | 39.200 | 125 | 67 | 2 | 161 | 276 | 29 | 153 | 1.96e-17 | 80.5 |
| Msa0250720 | MtrunA17_Chr1g0179581 | 43.333 | 90 | 51 | 0 | 182 | 271 | 21 | 110 | 5.74e-17 | 75.5 |
| Msa0250720 | MtrunA17_Chr3g0123691 | 36.986 | 146 | 80 | 4 | 176 | 310 | 46 | 190 | 5.96e-17 | 80.1 |
| Msa0250720 | MtrunA17_Chr8g0381741 | 46.875 | 96 | 44 | 1 | 188 | 276 | 53 | 148 | 3.29e-16 | 78.2 |
| Msa0250720 | MtrunA17_Chr8g0362751 | 44.681 | 94 | 45 | 1 | 189 | 275 | 89 | 182 | 2.13e-15 | 75.5 |
| Msa0250720 | MtrunA17_Chr5g0403691 | 45.882 | 85 | 46 | 0 | 189 | 273 | 53 | 137 | 4.24e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250720 | AT5G06710.1 | 49.693 | 326 | 133 | 8 | 1 | 310 | 1 | 311 | 4.05e-85 | 260 |
| Msa0250720 | AT2G44910.1 | 58.209 | 201 | 55 | 3 | 113 | 304 | 99 | 279 | 6.54e-65 | 207 |
| Msa0250720 | AT4G37790.1 | 61.236 | 178 | 58 | 3 | 151 | 320 | 83 | 257 | 7.34e-65 | 206 |
| Msa0250720 | AT3G60390.1 | 59.896 | 192 | 66 | 3 | 113 | 300 | 90 | 274 | 5.28e-64 | 205 |
| Msa0250720 | AT5G47370.1 | 56.881 | 218 | 76 | 6 | 111 | 319 | 53 | 261 | 1.21e-63 | 203 |
| Msa0250720 | AT4G16780.1 | 64.198 | 162 | 49 | 3 | 163 | 320 | 108 | 264 | 6.84e-61 | 196 |
| Msa0250720 | AT2G22800.1 | 75.862 | 116 | 28 | 0 | 186 | 301 | 110 | 225 | 1.63e-59 | 192 |
| Msa0250720 | AT4G17460.1 | 56.122 | 196 | 75 | 4 | 113 | 307 | 69 | 254 | 4.48e-59 | 191 |
| Msa0250720 | AT2G01430.1 | 57.042 | 142 | 59 | 2 | 175 | 316 | 125 | 264 | 1.40e-47 | 162 |
| Msa0250720 | AT1G70920.2 | 55.479 | 146 | 49 | 3 | 173 | 318 | 26 | 155 | 2.90e-41 | 142 |
| Msa0250720 | AT1G70920.1 | 55.479 | 146 | 49 | 3 | 173 | 318 | 56 | 185 | 3.39e-41 | 143 |
| Msa0250720 | AT5G06710.4 | 41.016 | 256 | 120 | 8 | 1 | 240 | 1 | 241 | 1.35e-38 | 138 |
| Msa0250720 | AT2G01430.2 | 63.636 | 66 | 24 | 0 | 175 | 240 | 125 | 190 | 7.22e-21 | 89.7 |
| Msa0250720 | AT5G03790.1 | 37.008 | 127 | 79 | 1 | 184 | 309 | 72 | 198 | 5.08e-18 | 82.4 |
| Msa0250720 | AT5G06710.2 | 36.681 | 229 | 114 | 11 | 1 | 213 | 1 | 214 | 1.10e-17 | 81.3 |
| Msa0250720 | AT5G06710.3 | 36.681 | 229 | 114 | 11 | 1 | 213 | 1 | 214 | 1.10e-17 | 81.3 |
| Msa0250720 | AT1G69780.1 | 44.554 | 101 | 56 | 0 | 176 | 276 | 72 | 172 | 2.64e-17 | 81.3 |
| Msa0250720 | AT1G26960.1 | 36.242 | 149 | 72 | 3 | 177 | 321 | 63 | 192 | 1.00e-16 | 79.0 |
| Msa0250720 | AT1G27045.5 | 51.852 | 81 | 38 | 1 | 175 | 254 | 10 | 90 | 3.32e-16 | 75.9 |
| Msa0250720 | AT1G27045.3 | 51.852 | 81 | 38 | 1 | 175 | 254 | 10 | 90 | 3.32e-16 | 75.9 |
| Msa0250720 | AT1G27045.2 | 51.852 | 81 | 38 | 1 | 175 | 254 | 2 | 82 | 3.60e-16 | 75.9 |
| Msa0250720 | AT1G27045.1 | 51.852 | 81 | 38 | 1 | 175 | 254 | 53 | 133 | 5.48e-16 | 76.3 |
| Msa0250720 | AT5G15150.1 | 40.909 | 110 | 54 | 2 | 173 | 275 | 103 | 208 | 8.10e-16 | 77.4 |
| Msa0250720 | AT2G36610.1 | 40.196 | 102 | 53 | 1 | 184 | 277 | 66 | 167 | 9.37e-16 | 74.7 |
| Msa0250720 | AT1G27045.4 | 51.852 | 81 | 38 | 1 | 175 | 254 | 53 | 133 | 1.01e-15 | 76.3 |
| Msa0250720 | AT2G18550.1 | 37.671 | 146 | 84 | 2 | 167 | 312 | 40 | 178 | 1.65e-15 | 74.7 |
| Msa0250720 | AT3G01220.1 | 42.453 | 106 | 55 | 2 | 177 | 278 | 77 | 180 | 1.96e-15 | 75.9 |
| Msa0250720 | AT3G01470.1 | 45.652 | 92 | 50 | 0 | 189 | 280 | 68 | 159 | 2.37e-15 | 75.5 |
| Msa0250720 | AT5G65310.2 | 40.909 | 110 | 55 | 2 | 177 | 276 | 39 | 148 | 4.25e-15 | 75.1 |
| Msa0250720 | AT5G03790.2 | 37.190 | 121 | 68 | 1 | 184 | 296 | 72 | 192 | 4.41e-15 | 73.2 |
| Msa0250720 | AT5G65310.1 | 40.909 | 110 | 55 | 2 | 177 | 276 | 57 | 166 | 4.54e-15 | 75.1 |
| Msa0250720 | AT2G22430.1 | 45.455 | 99 | 50 | 1 | 185 | 279 | 58 | 156 | 9.37e-15 | 74.3 |
| Msa0250720 | AT4G40060.1 | 39.669 | 121 | 67 | 2 | 163 | 279 | 35 | 153 | 2.70e-14 | 72.8 |
| Msa0250720 | AT4G36740.1 | 43.011 | 93 | 52 | 1 | 183 | 275 | 50 | 141 | 1.28e-12 | 66.6 |
| Msa0250720 | AT4G36740.2 | 43.011 | 93 | 52 | 1 | 183 | 275 | 51 | 142 | 1.41e-12 | 66.6 |
| Msa0250720 | AT2G46680.2 | 40.659 | 91 | 54 | 0 | 184 | 274 | 27 | 117 | 2.59e-12 | 66.2 |
| Msa0250720 | AT2G46680.1 | 40.659 | 91 | 54 | 0 | 184 | 274 | 27 | 117 | 2.88e-12 | 66.2 |
Find 67 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTACCTTGCTCTTCTATTT+TGG | 0.134685 | 2_2:+39805062 | None:intergenic |
| AAAGCCTCTAATTGGATTAA+TGG | 0.207556 | 2_2:-39806402 | Msa0250720:CDS |
| GACTCTTCAAAGCCTCTAAT+TGG | 0.231354 | 2_2:-39806410 | Msa0250720:CDS |
| CTTTGTGTAGTACTAATAAT+TGG | 0.238752 | 2_2:+39806314 | None:intergenic |
| GGTAGGAGTTTGAGTGGTTC+AGG | 0.247485 | 2_2:-39805828 | Msa0250720:CDS |
| TTGATTATATAGTGAGTTAT+TGG | 0.248916 | 2_2:-39804605 | Msa0250720:three_prime_UTR |
| AGTTGATGCAATACAGGATT+AGG | 0.292885 | 2_2:+39806212 | None:intergenic |
| AAGAAGATGCTGCACTATTC+GGG | 0.307898 | 2_2:+39805892 | None:intergenic |
| AATTTATTATCAACCGAGTT+TGG | 0.329723 | 2_2:-39805966 | Msa0250720:CDS |
| GAAGCCTAAGCCAAGTTCTT+TGG | 0.340212 | 2_2:+39806358 | None:intergenic |
| AAAGAAGATGCTGCACTATT+CGG | 0.346517 | 2_2:+39805891 | None:intergenic |
| TTCAACACCACTTTATCAAT+TGG | 0.386708 | 2_2:-39806338 | Msa0250720:CDS |
| CATCAAGCTTCCAAAGAACT+TGG | 0.420365 | 2_2:-39806368 | Msa0250720:CDS |
| TGGAGGTTCTTCAAGGGGAT+TGG | 0.425919 | 2_2:-39805946 | Msa0250720:CDS |
| AGATCAAGTTGATGCAATAC+AGG | 0.427277 | 2_2:+39806206 | None:intergenic |
| CCGAGTTTGGAGGTTCTTCA+AGG | 0.430226 | 2_2:-39805953 | Msa0250720:CDS |
| CACATAGTTAAAGTAGTTGC+TGG | 0.454337 | 2_2:+39804760 | None:intergenic |
| TATATAATCAATTCCAATGC+TGG | 0.455649 | 2_2:+39804617 | None:intergenic |
| GAAGTAGAGAAAAGAGATCA+TGG | 0.457988 | 2_2:-39806453 | None:intergenic |
| AAACACTAACAGAAGAGAAT+AGG | 0.466193 | 2_2:-39804849 | Msa0250720:CDS |
| GCTTCCAAAGAACTTGGCTT+AGG | 0.468530 | 2_2:-39806362 | Msa0250720:CDS |
| AATTGGACCAATTGATAAAG+TGG | 0.476543 | 2_2:+39806331 | None:intergenic |
| ATGGAGCTAGGTTTAAGCTT+AGG | 0.480018 | 2_2:-39806434 | Msa0250720:CDS |
| TTCCTCAACTCTCATTCCCA+TGG | 0.491801 | 2_2:-39806181 | Msa0250720:CDS |
| TTTGGAACCAGACTTCTACT+TGG | 0.497117 | 2_2:+39805080 | None:intergenic |
| AATACTAGTGCCACAATCAA+TGG | 0.499863 | 2_2:-39804685 | Msa0250720:CDS |
| GCTGGTAATTGCATGTTGAA+TGG | 0.500603 | 2_2:+39804778 | None:intergenic |
| AGTATTAGTGACTGAGGAAG+TGG | 0.500829 | 2_2:+39804702 | None:intergenic |
| GCCCTCGCCAAGTAGAAGTC+TGG | 0.501753 | 2_2:-39805087 | Msa0250720:CDS |
| CGAGTTTGGAGGTTCTTCAA+GGG | 0.504410 | 2_2:-39805952 | Msa0250720:CDS |
| AAGAAAAGCAGATTGATCCT+TGG | 0.505090 | 2_2:+39805683 | None:intergenic |
| GTAACACAAGGAAGAAACTT+AGG | 0.517327 | 2_2:-39805710 | Msa0250720:CDS |
| AGAAGAAGAAAAGACTCAAA+GGG | 0.521032 | 2_2:-39806267 | Msa0250720:CDS |
| TGGAATCCTCCTTCTCAAAA+CGG | 0.522286 | 2_2:-39806161 | Msa0250720:intron |
| AAGAAGAAGAAAAGACTCAA+AGG | 0.532446 | 2_2:-39806268 | Msa0250720:CDS |
| GATAACTGTGGTGTTGGTAA+TGG | 0.532740 | 2_2:-39805732 | Msa0250720:CDS |
| GTTGCAACACGTTCACAAGA+AGG | 0.536936 | 2_2:+39804736 | None:intergenic |
| CCTTGAAGAACCTCCAAACT+CGG | 0.537882 | 2_2:+39805953 | None:intergenic |
| TTATTATCAACCGAGTTTGG+AGG | 0.547939 | 2_2:-39805963 | Msa0250720:CDS |
| AGGAGTTTGAGTGGTTCAGG+AGG | 0.550877 | 2_2:-39805825 | Msa0250720:CDS |
| TTGCAACACGTTCACAAGAA+GGG | 0.553307 | 2_2:+39804737 | None:intergenic |
| ATGTACAGTCGAGGAGGAAG+TGG | 0.554028 | 2_2:-39805852 | Msa0250720:CDS |
| AGTGGTGGTAGGAGTTTGAG+TGG | 0.555829 | 2_2:-39805834 | Msa0250720:CDS |
| AGAAAAGAGATCATGGAGCT+AGG | 0.556425 | 2_2:-39806446 | Msa0250720:exon |
| CACTAACAGAAGAGAATAGG+AGG | 0.565496 | 2_2:-39804846 | Msa0250720:CDS |
| GAAGATGATAACTGTGGTGT+TGG | 0.570473 | 2_2:-39805738 | Msa0250720:CDS |
| ATGGTGAAGGCTATGATCAA+AGG | 0.573415 | 2_2:-39805782 | Msa0250720:CDS |
| TTTGAGAAGGAGGATTCCAT+GGG | 0.580464 | 2_2:+39806165 | None:intergenic |
| AACCAGACTTCTACTTGGCG+AGG | 0.590253 | 2_2:+39805085 | None:intergenic |
| GAGTTTGGAGGTTCTTCAAG+GGG | 0.603616 | 2_2:-39805951 | Msa0250720:CDS |
| AGTTCTTTGGAAGCTTGATG+AGG | 0.611059 | 2_2:+39806371 | None:intergenic |
| ATTGGATGTGAACGATGAGA+TGG | 0.615034 | 2_2:-39805928 | Msa0250720:CDS |
| TACAGTCGAGGAGGAAGTGG+TGG | 0.618589 | 2_2:-39805849 | Msa0250720:CDS |
| ATTGTTATTACCATTGATTG+TGG | 0.625260 | 2_2:+39804675 | None:intergenic |
| TTCCATGGGAATGAGAGTTG+AGG | 0.625263 | 2_2:+39806179 | None:intergenic |
| ACCAGACTTCTACTTGGCGA+GGG | 0.626726 | 2_2:+39805086 | None:intergenic |
| GAAGAAACTTAGGCTCTCCA+AGG | 0.627212 | 2_2:-39805700 | Msa0250720:CDS |
| GTCGAGGAGGAAGTGGTGGT+AGG | 0.639483 | 2_2:-39805845 | Msa0250720:CDS |
| GGAGTTTGAGTGGTTCAGGA+GGG | 0.643496 | 2_2:-39805824 | Msa0250720:CDS |
| GGTTCCAAAATAGAAGAGCA+AGG | 0.645595 | 2_2:-39805066 | Msa0250720:intron |
| AGAAGATGCTGCACTATTCG+GGG | 0.651031 | 2_2:+39805893 | None:intergenic |
| GGCACTAGTATTAGTGACTG+AGG | 0.651032 | 2_2:+39804696 | None:intergenic |
| GATCTATGCATGTACAGTCG+AGG | 0.663378 | 2_2:-39805861 | Msa0250720:CDS |
| AGAGAATAGGAGGCTACACA+AGG | 0.664591 | 2_2:-39804836 | Msa0250720:CDS |
| CTATGCATGTACAGTCGAGG+AGG | 0.685551 | 2_2:-39805858 | Msa0250720:CDS |
| AGTGATGAAGATGATAACTG+TGG | 0.745381 | 2_2:-39805744 | Msa0250720:CDS |
| GTGTTGGTAATGGTAACACA+AGG | 0.792389 | 2_2:-39805722 | Msa0250720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATAAAACAAATAAAT+GGG | + | chr2_2:39805807-39805826 | None:intergenic | 10.0% |
| !! | AACAAAATAAAACAAATAAA+TGG | + | chr2_2:39805808-39805827 | None:intergenic | 10.0% |
| !!! | ATTGATTTAATTTTGTATAT+AGG | - | chr2_2:39806422-39806441 | Msa0250720:CDS | 10.0% |
| !!! | TTGATTTAATTTTGTATATA+GGG | - | chr2_2:39806423-39806442 | Msa0250720:CDS | 10.0% |
| !! | ACAAAATAAAACAAATAAAT+GGG | + | chr2_2:39805807-39805826 | None:intergenic | 10.0% |
| !! | AACAAAATAAAACAAATAAA+TGG | + | chr2_2:39805808-39805827 | None:intergenic | 10.0% |
| !!! | ATTGATTTAATTTTGTATAT+AGG | - | chr2_2:39806422-39806441 | Msa0250720:CDS | 10.0% |
| !!! | TTGATTTAATTTTGTATATA+GGG | - | chr2_2:39806423-39806442 | Msa0250720:CDS | 10.0% |
| !! | AAGAGTAAAAGATAAAATAT+CGG | + | chr2_2:39804892-39804911 | None:intergenic | 15.0% |
| !!! | ATAGAATATTTTCTTTTGAA+AGG | + | chr2_2:39805591-39805610 | None:intergenic | 15.0% |
| !! | CTATATATTAGAGATATATT+TGG | + | chr2_2:39805630-39805649 | None:intergenic | 15.0% |
| !! | ATATCTCTAATATATAGTAT+TGG | - | chr2_2:39805633-39805652 | Msa0250720:intron | 15.0% |
| !!! | TTGTTTAAAATACTAATAGT+TGG | - | chr2_2:39805838-39805857 | Msa0250720:CDS | 15.0% |
| !!! | CAACTTTATTTTTTAAACTT+TGG | - | chr2_2:39806030-39806049 | Msa0250720:intron | 15.0% |
| !! | AAGAGTAAAAGATAAAATAT+CGG | + | chr2_2:39804892-39804911 | None:intergenic | 15.0% |
| !!! | ATAGAATATTTTCTTTTGAA+AGG | + | chr2_2:39805591-39805610 | None:intergenic | 15.0% |
| !! | CTATATATTAGAGATATATT+TGG | + | chr2_2:39805630-39805649 | None:intergenic | 15.0% |
| !! | ATATCTCTAATATATAGTAT+TGG | - | chr2_2:39805633-39805652 | Msa0250720:intron | 15.0% |
| !!! | TTGTTTAAAATACTAATAGT+TGG | - | chr2_2:39805838-39805857 | Msa0250720:CDS | 15.0% |
| !!! | CAACTTTATTTTTTAAACTT+TGG | - | chr2_2:39806030-39806049 | Msa0250720:intron | 15.0% |
| !!! | TAAAATATCGGTAACTTTTT+AGG | + | chr2_2:39804880-39804899 | None:intergenic | 20.0% |
| !!! | TAATCCTATTTTAAAAACAC+TGG | + | chr2_2:39804959-39804978 | None:intergenic | 20.0% |
| !! | AGTGCTTATTATGATTATAA+GGG | - | chr2_2:39804990-39805009 | Msa0250720:intron | 20.0% |
| !!! | GTTATTATTGTTTTCACAAT+AGG | - | chr2_2:39805012-39805031 | Msa0250720:intron | 20.0% |
| !!! | TAGATTTTTTTTTTTATGGC+CGG | + | chr2_2:39805498-39805517 | None:intergenic | 20.0% |
| !! | TTGATTATATAGTGAGTTAT+TGG | - | chr2_2:39806397-39806416 | Msa0250720:CDS | 20.0% |
| !!! | TAAAATATCGGTAACTTTTT+AGG | + | chr2_2:39804880-39804899 | None:intergenic | 20.0% |
| !!! | TAATCCTATTTTAAAAACAC+TGG | + | chr2_2:39804959-39804978 | None:intergenic | 20.0% |
| !! | AGTGCTTATTATGATTATAA+GGG | - | chr2_2:39804990-39805009 | Msa0250720:intron | 20.0% |
| !!! | GTTATTATTGTTTTCACAAT+AGG | - | chr2_2:39805012-39805031 | Msa0250720:intron | 20.0% |
| !!! | TAGATTTTTTTTTTTATGGC+CGG | + | chr2_2:39805498-39805517 | None:intergenic | 20.0% |
| !! | TTGATTATATAGTGAGTTAT+TGG | - | chr2_2:39806397-39806416 | Msa0250720:CDS | 20.0% |
| !! | TTTTCCATTAATCCAATTAG+AGG | + | chr2_2:39804607-39804626 | None:intergenic | 25.0% |
| ! | CTTTGTGTAGTACTAATAAT+TGG | + | chr2_2:39804691-39804710 | None:intergenic | 25.0% |
| !!! | GAAACCAGTGTTTTTAAAAT+AGG | - | chr2_2:39804952-39804971 | Msa0250720:intron | 25.0% |
| ! | CAGTGCTTATTATGATTATA+AGG | - | chr2_2:39804989-39805008 | Msa0250720:intron | 25.0% |
| ! | AATTTATTATCAACCGAGTT+TGG | - | chr2_2:39805036-39805055 | Msa0250720:intron | 25.0% |
| ! | AGAGAAAAAAAACACATACA+GGG | + | chr2_2:39805377-39805396 | None:intergenic | 25.0% |
| ! | TGCATAAAAATATGCAAAGT+CGG | - | chr2_2:39805462-39805481 | Msa0250720:intron | 25.0% |
| !!! | AGATTTTTTTTTTTATGGCC+GGG | + | chr2_2:39805497-39805516 | None:intergenic | 25.0% |
| ! | GTTTCTACTTTAGATTGAAT+TGG | - | chr2_2:39805678-39805697 | Msa0250720:CDS | 25.0% |
| !! | ATTTTATGACAATTCTTCCT+TGG | - | chr2_2:39805780-39805799 | Msa0250720:CDS | 25.0% |
| ! | AAAATTATAGTCAAATGCAG+TGG | - | chr2_2:39806004-39806023 | Msa0250720:intron | 25.0% |
| ! | ATAAATTTATGTTCTGATGC+AGG | - | chr2_2:39806078-39806097 | Msa0250720:intron | 25.0% |
| !! | ATTGTTATTACCATTGATTG+TGG | + | chr2_2:39806330-39806349 | None:intergenic | 25.0% |
| ! | TATATAATCAATTCCAATGC+TGG | + | chr2_2:39806388-39806407 | None:intergenic | 25.0% |
| !! | TTTTCCATTAATCCAATTAG+AGG | + | chr2_2:39804607-39804626 | None:intergenic | 25.0% |
| ! | CTTTGTGTAGTACTAATAAT+TGG | + | chr2_2:39804691-39804710 | None:intergenic | 25.0% |
| !!! | GAAACCAGTGTTTTTAAAAT+AGG | - | chr2_2:39804952-39804971 | Msa0250720:intron | 25.0% |
| ! | CAGTGCTTATTATGATTATA+AGG | - | chr2_2:39804989-39805008 | Msa0250720:intron | 25.0% |
| ! | AATTTATTATCAACCGAGTT+TGG | - | chr2_2:39805036-39805055 | Msa0250720:intron | 25.0% |
| ! | AGAGAAAAAAAACACATACA+GGG | + | chr2_2:39805377-39805396 | None:intergenic | 25.0% |
| ! | TGCATAAAAATATGCAAAGT+CGG | - | chr2_2:39805462-39805481 | Msa0250720:intron | 25.0% |
| !!! | AGATTTTTTTTTTTATGGCC+GGG | + | chr2_2:39805497-39805516 | None:intergenic | 25.0% |
| ! | GTTTCTACTTTAGATTGAAT+TGG | - | chr2_2:39805678-39805697 | Msa0250720:CDS | 25.0% |
| !! | ATTTTATGACAATTCTTCCT+TGG | - | chr2_2:39805780-39805799 | Msa0250720:CDS | 25.0% |
| ! | AAAATTATAGTCAAATGCAG+TGG | - | chr2_2:39806004-39806023 | Msa0250720:intron | 25.0% |
| ! | ATAAATTTATGTTCTGATGC+AGG | - | chr2_2:39806078-39806097 | Msa0250720:intron | 25.0% |
| !! | ATTGTTATTACCATTGATTG+TGG | + | chr2_2:39806330-39806349 | None:intergenic | 25.0% |
| ! | TATATAATCAATTCCAATGC+TGG | + | chr2_2:39806388-39806407 | None:intergenic | 25.0% |
| AAAGCCTCTAATTGGATTAA+TGG | - | chr2_2:39804600-39804619 | Msa0250720:three_prime_UTR | 30.0% | |
| TTCAACACCACTTTATCAAT+TGG | - | chr2_2:39804664-39804683 | Msa0250720:CDS | 30.0% | |
| AATTGGACCAATTGATAAAG+TGG | + | chr2_2:39804674-39804693 | None:intergenic | 30.0% | |
| AAGAAGAAGAAAAGACTCAA+AGG | - | chr2_2:39804734-39804753 | Msa0250720:CDS | 30.0% | |
| AGAAGAAGAAAAGACTCAAA+GGG | - | chr2_2:39804735-39804754 | Msa0250720:CDS | 30.0% | |
| ! | AACAAGAGAGAATTTTCTGA+TGG | - | chr2_2:39805201-39805220 | Msa0250720:intron | 30.0% |
| GAGAGAAAAAAAACACATAC+AGG | + | chr2_2:39805378-39805397 | None:intergenic | 30.0% | |
| GCATAAAAATATGCAAAGTC+GGG | - | chr2_2:39805463-39805482 | Msa0250720:intron | 30.0% | |
| CATAAAAATATGCAAAGTCG+GGG | - | chr2_2:39805464-39805483 | Msa0250720:intron | 30.0% | |
| !!! | GATTTTTTTTTTTATGGCCG+GGG | + | chr2_2:39805496-39805515 | None:intergenic | 30.0% |
| AAAACAAATAAATGGGTCCA+AGG | + | chr2_2:39805800-39805819 | None:intergenic | 30.0% | |
| AAACACTAACAGAAGAGAAT+AGG | - | chr2_2:39806153-39806172 | Msa0250720:intron | 30.0% | |
| AAAGCCTCTAATTGGATTAA+TGG | - | chr2_2:39804600-39804619 | Msa0250720:three_prime_UTR | 30.0% | |
| TTCAACACCACTTTATCAAT+TGG | - | chr2_2:39804664-39804683 | Msa0250720:CDS | 30.0% | |
| AATTGGACCAATTGATAAAG+TGG | + | chr2_2:39804674-39804693 | None:intergenic | 30.0% | |
| AAGAAGAAGAAAAGACTCAA+AGG | - | chr2_2:39804734-39804753 | Msa0250720:CDS | 30.0% | |
| AGAAGAAGAAAAGACTCAAA+GGG | - | chr2_2:39804735-39804754 | Msa0250720:CDS | 30.0% | |
| ! | AACAAGAGAGAATTTTCTGA+TGG | - | chr2_2:39805201-39805220 | Msa0250720:intron | 30.0% |
| GAGAGAAAAAAAACACATAC+AGG | + | chr2_2:39805378-39805397 | None:intergenic | 30.0% | |
| GCATAAAAATATGCAAAGTC+GGG | - | chr2_2:39805463-39805482 | Msa0250720:intron | 30.0% | |
| CATAAAAATATGCAAAGTCG+GGG | - | chr2_2:39805464-39805483 | Msa0250720:intron | 30.0% | |
| !!! | GATTTTTTTTTTTATGGCCG+GGG | + | chr2_2:39805496-39805515 | None:intergenic | 30.0% |
| AAAACAAATAAATGGGTCCA+AGG | + | chr2_2:39805800-39805819 | None:intergenic | 30.0% | |
| AAACACTAACAGAAGAGAAT+AGG | - | chr2_2:39806153-39806172 | Msa0250720:intron | 30.0% | |
| ! | AGTTGATGCAATACAGGATT+AGG | + | chr2_2:39804793-39804812 | None:intergenic | 35.0% |
| !! | AGATCAAGTTGATGCAATAC+AGG | + | chr2_2:39804799-39804818 | None:intergenic | 35.0% |
| !! | TCGGTAACTTTTTAGGAAGT+GGG | + | chr2_2:39804873-39804892 | None:intergenic | 35.0% |
| !! | ATCGGTAACTTTTTAGGAAG+TGG | + | chr2_2:39804874-39804893 | None:intergenic | 35.0% |
| TTATTATCAACCGAGTTTGG+AGG | - | chr2_2:39805039-39805058 | Msa0250720:intron | 35.0% | |
| AAAGAAGATGCTGCACTATT+CGG | + | chr2_2:39805114-39805133 | None:intergenic | 35.0% | |
| !! | AGAGAATTTTCTGATGGTGA+AGG | - | chr2_2:39805207-39805226 | Msa0250720:intron | 35.0% |
| AGTGATGAAGATGATAACTG+TGG | - | chr2_2:39805258-39805277 | Msa0250720:intron | 35.0% | |
| GTAACACAAGGAAGAAACTT+AGG | - | chr2_2:39805292-39805311 | Msa0250720:intron | 35.0% | |
| AAGAAAAGCAGATTGATCCT+TGG | + | chr2_2:39805322-39805341 | None:intergenic | 35.0% | |
| TAGTATGTGTGGTATGAATC+TGG | + | chr2_2:39805533-39805552 | None:intergenic | 35.0% | |
| TATCGACATGTTAGTATGTG+TGG | + | chr2_2:39805544-39805563 | None:intergenic | 35.0% | |
| CTAATAGTTGGACACAATTG+TGG | - | chr2_2:39805850-39805869 | Msa0250720:CDS | 35.0% | |
| TGTGGTGTAGAAACAAAAAC+TGG | - | chr2_2:39805868-39805887 | Msa0250720:CDS | 35.0% | |
| ! | TGTACCTTGCTCTTCTATTT+TGG | + | chr2_2:39805943-39805962 | None:intergenic | 35.0% |
| CACATAGTTAAAGTAGTTGC+TGG | + | chr2_2:39806245-39806264 | None:intergenic | 35.0% | |
| AATACTAGTGCCACAATCAA+TGG | - | chr2_2:39806317-39806336 | Msa0250720:CDS | 35.0% | |
| !!! | AATTCCAATGCTGGTTTTTG+AGG | + | chr2_2:39806379-39806398 | None:intergenic | 35.0% |
| ! | AGTTGATGCAATACAGGATT+AGG | + | chr2_2:39804793-39804812 | None:intergenic | 35.0% |
| !! | AGATCAAGTTGATGCAATAC+AGG | + | chr2_2:39804799-39804818 | None:intergenic | 35.0% |
| !! | TCGGTAACTTTTTAGGAAGT+GGG | + | chr2_2:39804873-39804892 | None:intergenic | 35.0% |
| !! | ATCGGTAACTTTTTAGGAAG+TGG | + | chr2_2:39804874-39804893 | None:intergenic | 35.0% |
| TTATTATCAACCGAGTTTGG+AGG | - | chr2_2:39805039-39805058 | Msa0250720:intron | 35.0% | |
| AAAGAAGATGCTGCACTATT+CGG | + | chr2_2:39805114-39805133 | None:intergenic | 35.0% | |
| !! | AGAGAATTTTCTGATGGTGA+AGG | - | chr2_2:39805207-39805226 | Msa0250720:intron | 35.0% |
| AGTGATGAAGATGATAACTG+TGG | - | chr2_2:39805258-39805277 | Msa0250720:intron | 35.0% | |
| GTAACACAAGGAAGAAACTT+AGG | - | chr2_2:39805292-39805311 | Msa0250720:intron | 35.0% | |
| AAGAAAAGCAGATTGATCCT+TGG | + | chr2_2:39805322-39805341 | None:intergenic | 35.0% | |
| TAGTATGTGTGGTATGAATC+TGG | + | chr2_2:39805533-39805552 | None:intergenic | 35.0% | |
| TATCGACATGTTAGTATGTG+TGG | + | chr2_2:39805544-39805563 | None:intergenic | 35.0% | |
| CTAATAGTTGGACACAATTG+TGG | - | chr2_2:39805850-39805869 | Msa0250720:CDS | 35.0% | |
| TGTGGTGTAGAAACAAAAAC+TGG | - | chr2_2:39805868-39805887 | Msa0250720:CDS | 35.0% | |
| ! | TGTACCTTGCTCTTCTATTT+TGG | + | chr2_2:39805943-39805962 | None:intergenic | 35.0% |
| CACATAGTTAAAGTAGTTGC+TGG | + | chr2_2:39806245-39806264 | None:intergenic | 35.0% | |
| AATACTAGTGCCACAATCAA+TGG | - | chr2_2:39806317-39806336 | Msa0250720:CDS | 35.0% | |
| !!! | AATTCCAATGCTGGTTTTTG+AGG | + | chr2_2:39806379-39806398 | None:intergenic | 35.0% |
| ATGGAGCTAGGTTTAAGCTT+AGG | - | chr2_2:39804568-39804587 | Msa0250720:three_prime_UTR | 40.0% | |
| GACTCTTCAAAGCCTCTAAT+TGG | - | chr2_2:39804592-39804611 | Msa0250720:three_prime_UTR | 40.0% | |
| ! | AGTTCTTTGGAAGCTTGATG+AGG | + | chr2_2:39804634-39804653 | None:intergenic | 40.0% |
| CATCAAGCTTCCAAAGAACT+TGG | - | chr2_2:39804634-39804653 | Msa0250720:three_prime_UTR | 40.0% | |
| TTTGAGAAGGAGGATTCCAT+GGG | + | chr2_2:39804840-39804859 | None:intergenic | 40.0% | |
| !! | TTTTGAGAAGGAGGATTCCA+TGG | + | chr2_2:39804841-39804860 | None:intergenic | 40.0% |
| TGGAATCCTCCTTCTCAAAA+CGG | - | chr2_2:39804841-39804860 | Msa0250720:CDS | 40.0% | |
| !!! | TTGTTACCGTTTTGAGAAGG+AGG | + | chr2_2:39804850-39804869 | None:intergenic | 40.0% |
| ATTGGATGTGAACGATGAGA+TGG | - | chr2_2:39805074-39805093 | Msa0250720:CDS | 40.0% | |
| AAGAAGATGCTGCACTATTC+GGG | + | chr2_2:39805113-39805132 | None:intergenic | 40.0% | |
| ! | TGCAGCATCTTCTTTTCAGA+TGG | - | chr2_2:39805119-39805138 | Msa0250720:CDS | 40.0% |
| ATGGTGAAGGCTATGATCAA+AGG | - | chr2_2:39805220-39805239 | Msa0250720:intron | 40.0% | |
| GAAGATGATAACTGTGGTGT+TGG | - | chr2_2:39805264-39805283 | Msa0250720:intron | 40.0% | |
| !! | GATAACTGTGGTGTTGGTAA+TGG | - | chr2_2:39805270-39805289 | Msa0250720:intron | 40.0% |
| !! | GTGTTGGTAATGGTAACACA+AGG | - | chr2_2:39805280-39805299 | Msa0250720:intron | 40.0% |
| ! | TTTGGAACCAGACTTCTACT+TGG | + | chr2_2:39805925-39805944 | None:intergenic | 40.0% |
| GGTTCCAAAATAGAAGAGCA+AGG | - | chr2_2:39805936-39805955 | Msa0250720:CDS | 40.0% | |
| CACTAACAGAAGAGAATAGG+AGG | - | chr2_2:39806156-39806175 | Msa0250720:intron | 40.0% | |
| GCTGGTAATTGCATGTTGAA+TGG | + | chr2_2:39806227-39806246 | None:intergenic | 40.0% | |
| TTGCAACACGTTCACAAGAA+GGG | + | chr2_2:39806268-39806287 | None:intergenic | 40.0% | |
| AGTATTAGTGACTGAGGAAG+TGG | + | chr2_2:39806303-39806322 | None:intergenic | 40.0% | |
| !!! | TTTTGAGGTGGAATCATCAC+TGG | + | chr2_2:39806364-39806383 | None:intergenic | 40.0% |
| ATGGAGCTAGGTTTAAGCTT+AGG | - | chr2_2:39804568-39804587 | Msa0250720:three_prime_UTR | 40.0% | |
| GACTCTTCAAAGCCTCTAAT+TGG | - | chr2_2:39804592-39804611 | Msa0250720:three_prime_UTR | 40.0% | |
| ! | AGTTCTTTGGAAGCTTGATG+AGG | + | chr2_2:39804634-39804653 | None:intergenic | 40.0% |
| CATCAAGCTTCCAAAGAACT+TGG | - | chr2_2:39804634-39804653 | Msa0250720:three_prime_UTR | 40.0% | |
| TTTGAGAAGGAGGATTCCAT+GGG | + | chr2_2:39804840-39804859 | None:intergenic | 40.0% | |
| !! | TTTTGAGAAGGAGGATTCCA+TGG | + | chr2_2:39804841-39804860 | None:intergenic | 40.0% |
| TGGAATCCTCCTTCTCAAAA+CGG | - | chr2_2:39804841-39804860 | Msa0250720:CDS | 40.0% | |
| !!! | TTGTTACCGTTTTGAGAAGG+AGG | + | chr2_2:39804850-39804869 | None:intergenic | 40.0% |
| ATTGGATGTGAACGATGAGA+TGG | - | chr2_2:39805074-39805093 | Msa0250720:CDS | 40.0% | |
| AAGAAGATGCTGCACTATTC+GGG | + | chr2_2:39805113-39805132 | None:intergenic | 40.0% | |
| ! | TGCAGCATCTTCTTTTCAGA+TGG | - | chr2_2:39805119-39805138 | Msa0250720:CDS | 40.0% |
| ATGGTGAAGGCTATGATCAA+AGG | - | chr2_2:39805220-39805239 | Msa0250720:intron | 40.0% | |
| GAAGATGATAACTGTGGTGT+TGG | - | chr2_2:39805264-39805283 | Msa0250720:intron | 40.0% | |
| !! | GATAACTGTGGTGTTGGTAA+TGG | - | chr2_2:39805270-39805289 | Msa0250720:intron | 40.0% |
| !! | GTGTTGGTAATGGTAACACA+AGG | - | chr2_2:39805280-39805299 | Msa0250720:intron | 40.0% |
| ! | TTTGGAACCAGACTTCTACT+TGG | + | chr2_2:39805925-39805944 | None:intergenic | 40.0% |
| GGTTCCAAAATAGAAGAGCA+AGG | - | chr2_2:39805936-39805955 | Msa0250720:CDS | 40.0% | |
| CACTAACAGAAGAGAATAGG+AGG | - | chr2_2:39806156-39806175 | Msa0250720:intron | 40.0% | |
| GCTGGTAATTGCATGTTGAA+TGG | + | chr2_2:39806227-39806246 | None:intergenic | 40.0% | |
| TTGCAACACGTTCACAAGAA+GGG | + | chr2_2:39806268-39806287 | None:intergenic | 40.0% | |
| AGTATTAGTGACTGAGGAAG+TGG | + | chr2_2:39806303-39806322 | None:intergenic | 40.0% | |
| !!! | TTTTGAGGTGGAATCATCAC+TGG | + | chr2_2:39806364-39806383 | None:intergenic | 40.0% |
| GCTTCCAAAGAACTTGGCTT+AGG | - | chr2_2:39804640-39804659 | Msa0250720:exon | 45.0% | |
| GAAGCCTAAGCCAAGTTCTT+TGG | + | chr2_2:39804647-39804666 | None:intergenic | 45.0% | |
| TTCCTCAACTCTCATTCCCA+TGG | - | chr2_2:39804821-39804840 | Msa0250720:CDS | 45.0% | |
| TTCCATGGGAATGAGAGTTG+AGG | + | chr2_2:39804826-39804845 | None:intergenic | 45.0% | |
| !!! | GGGTTGTTACCGTTTTGAGA+AGG | + | chr2_2:39804853-39804872 | None:intergenic | 45.0% |
| CCTTGAAGAACCTCCAAACT+CGG | + | chr2_2:39805052-39805071 | None:intergenic | 45.0% | |
| CGAGTTTGGAGGTTCTTCAA+GGG | - | chr2_2:39805050-39805069 | Msa0250720:intron | 45.0% | |
| GAGTTTGGAGGTTCTTCAAG+GGG | - | chr2_2:39805051-39805070 | Msa0250720:intron | 45.0% | |
| AGAAGATGCTGCACTATTCG+GGG | + | chr2_2:39805112-39805131 | None:intergenic | 45.0% | |
| GATCTATGCATGTACAGTCG+AGG | - | chr2_2:39805141-39805160 | Msa0250720:intron | 45.0% | |
| GAAGAAACTTAGGCTCTCCA+AGG | - | chr2_2:39805302-39805321 | Msa0250720:intron | 45.0% | |
| AGAGAATAGGAGGCTACACA+AGG | - | chr2_2:39806166-39806185 | Msa0250720:CDS | 45.0% | |
| GTTGCAACACGTTCACAAGA+AGG | + | chr2_2:39806269-39806288 | None:intergenic | 45.0% | |
| GGCACTAGTATTAGTGACTG+AGG | + | chr2_2:39806309-39806328 | None:intergenic | 45.0% | |
| TCCACCTCAAAAACCAGCAT+TGG | - | chr2_2:39806372-39806391 | Msa0250720:CDS | 45.0% | |
| !!! | TCCAATGCTGGTTTTTGAGG+TGG | + | chr2_2:39806376-39806395 | None:intergenic | 45.0% |
| GCTTCCAAAGAACTTGGCTT+AGG | - | chr2_2:39804640-39804659 | Msa0250720:exon | 45.0% | |
| GAAGCCTAAGCCAAGTTCTT+TGG | + | chr2_2:39804647-39804666 | None:intergenic | 45.0% | |
| TTCCTCAACTCTCATTCCCA+TGG | - | chr2_2:39804821-39804840 | Msa0250720:CDS | 45.0% | |
| TTCCATGGGAATGAGAGTTG+AGG | + | chr2_2:39804826-39804845 | None:intergenic | 45.0% | |
| !!! | GGGTTGTTACCGTTTTGAGA+AGG | + | chr2_2:39804853-39804872 | None:intergenic | 45.0% |
| CCTTGAAGAACCTCCAAACT+CGG | + | chr2_2:39805052-39805071 | None:intergenic | 45.0% | |
| CGAGTTTGGAGGTTCTTCAA+GGG | - | chr2_2:39805050-39805069 | Msa0250720:intron | 45.0% | |
| GAGTTTGGAGGTTCTTCAAG+GGG | - | chr2_2:39805051-39805070 | Msa0250720:intron | 45.0% | |
| AGAAGATGCTGCACTATTCG+GGG | + | chr2_2:39805112-39805131 | None:intergenic | 45.0% | |
| GATCTATGCATGTACAGTCG+AGG | - | chr2_2:39805141-39805160 | Msa0250720:intron | 45.0% | |
| GAAGAAACTTAGGCTCTCCA+AGG | - | chr2_2:39805302-39805321 | Msa0250720:intron | 45.0% | |
| AGAGAATAGGAGGCTACACA+AGG | - | chr2_2:39806166-39806185 | Msa0250720:CDS | 45.0% | |
| GTTGCAACACGTTCACAAGA+AGG | + | chr2_2:39806269-39806288 | None:intergenic | 45.0% | |
| GGCACTAGTATTAGTGACTG+AGG | + | chr2_2:39806309-39806328 | None:intergenic | 45.0% | |
| TCCACCTCAAAAACCAGCAT+TGG | - | chr2_2:39806372-39806391 | Msa0250720:CDS | 45.0% | |
| !!! | TCCAATGCTGGTTTTTGAGG+TGG | + | chr2_2:39806376-39806395 | None:intergenic | 45.0% |
| !!! | TTTATAGATTTTTTTTTTTA+TGG | + | chr2_2:39805502-39805521 | None:intergenic | 5.0% |
| !!! | TTTATAGATTTTTTTTTTTA+TGG | + | chr2_2:39805502-39805521 | None:intergenic | 5.0% |
| CCGAGTTTGGAGGTTCTTCA+AGG | - | chr2_2:39805049-39805068 | Msa0250720:intron | 50.0% | |
| TGGAGGTTCTTCAAGGGGAT+TGG | - | chr2_2:39805056-39805075 | Msa0250720:intron | 50.0% | |
| CTATGCATGTACAGTCGAGG+AGG | - | chr2_2:39805144-39805163 | Msa0250720:intron | 50.0% | |
| ATGTACAGTCGAGGAGGAAG+TGG | - | chr2_2:39805150-39805169 | Msa0250720:intron | 50.0% | |
| AGTGGTGGTAGGAGTTTGAG+TGG | - | chr2_2:39805168-39805187 | Msa0250720:intron | 50.0% | |
| GGTAGGAGTTTGAGTGGTTC+AGG | - | chr2_2:39805174-39805193 | Msa0250720:intron | 50.0% | |
| AGGAGTTTGAGTGGTTCAGG+AGG | - | chr2_2:39805177-39805196 | Msa0250720:intron | 50.0% | |
| GGAGTTTGAGTGGTTCAGGA+GGG | - | chr2_2:39805178-39805197 | Msa0250720:intron | 50.0% | |
| ACCAGACTTCTACTTGGCGA+GGG | + | chr2_2:39805919-39805938 | None:intergenic | 50.0% | |
| AACCAGACTTCTACTTGGCG+AGG | + | chr2_2:39805920-39805939 | None:intergenic | 50.0% | |
| CCGAGTTTGGAGGTTCTTCA+AGG | - | chr2_2:39805049-39805068 | Msa0250720:intron | 50.0% | |
| TGGAGGTTCTTCAAGGGGAT+TGG | - | chr2_2:39805056-39805075 | Msa0250720:intron | 50.0% | |
| CTATGCATGTACAGTCGAGG+AGG | - | chr2_2:39805144-39805163 | Msa0250720:intron | 50.0% | |
| ATGTACAGTCGAGGAGGAAG+TGG | - | chr2_2:39805150-39805169 | Msa0250720:intron | 50.0% | |
| AGTGGTGGTAGGAGTTTGAG+TGG | - | chr2_2:39805168-39805187 | Msa0250720:intron | 50.0% | |
| GGTAGGAGTTTGAGTGGTTC+AGG | - | chr2_2:39805174-39805193 | Msa0250720:intron | 50.0% | |
| AGGAGTTTGAGTGGTTCAGG+AGG | - | chr2_2:39805177-39805196 | Msa0250720:intron | 50.0% | |
| GGAGTTTGAGTGGTTCAGGA+GGG | - | chr2_2:39805178-39805197 | Msa0250720:intron | 50.0% | |
| ACCAGACTTCTACTTGGCGA+GGG | + | chr2_2:39805919-39805938 | None:intergenic | 50.0% | |
| AACCAGACTTCTACTTGGCG+AGG | + | chr2_2:39805920-39805939 | None:intergenic | 50.0% | |
| TACAGTCGAGGAGGAAGTGG+TGG | - | chr2_2:39805153-39805172 | Msa0250720:intron | 55.0% | |
| CAAAGTCGGGGTTCAAACCC+CGG | - | chr2_2:39805476-39805495 | Msa0250720:intron | 55.0% | |
| TACAGTCGAGGAGGAAGTGG+TGG | - | chr2_2:39805153-39805172 | Msa0250720:intron | 55.0% | |
| CAAAGTCGGGGTTCAAACCC+CGG | - | chr2_2:39805476-39805495 | Msa0250720:intron | 55.0% | |
| GTCGAGGAGGAAGTGGTGGT+AGG | - | chr2_2:39805157-39805176 | Msa0250720:intron | 60.0% | |
| GCCCTCGCCAAGTAGAAGTC+TGG | - | chr2_2:39805915-39805934 | Msa0250720:CDS | 60.0% | |
| GTCGAGGAGGAAGTGGTGGT+AGG | - | chr2_2:39805157-39805176 | Msa0250720:intron | 60.0% | |
| GCCCTCGCCAAGTAGAAGTC+TGG | - | chr2_2:39805915-39805934 | Msa0250720:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 39804559 | 39806465 | 39804559 | ID=Msa0250720;Name=Msa0250720 |
| chr2_2 | mRNA | 39804559 | 39806465 | 39804559 | ID=Msa0250720-mRNA-1;Parent=Msa0250720;Name=Msa0250720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=9|1|0.75|1|1|1|4|98|328 |
| chr2_2 | exon | 39804559 | 39804924 | 39804559 | ID=Msa0250720-mRNA-1:exon:12319;Parent=Msa0250720-mRNA-1 |
| chr2_2 | exon | 39805067 | 39805146 | 39805067 | ID=Msa0250720-mRNA-1:exon:12318;Parent=Msa0250720-mRNA-1 |
| chr2_2 | exon | 39805647 | 39805990 | 39805647 | ID=Msa0250720-mRNA-1:exon:12317;Parent=Msa0250720-mRNA-1 |
| chr2_2 | exon | 39806162 | 39806465 | 39806162 | ID=Msa0250720-mRNA-1:exon:12316;Parent=Msa0250720-mRNA-1 |
| chr2_2 | five_prime_UTR | 39806457 | 39806465 | 39806457 | ID=Msa0250720-mRNA-1:five_prime_utr;Parent=Msa0250720-mRNA-1 |
| chr2_2 | CDS | 39806162 | 39806456 | 39806162 | ID=Msa0250720-mRNA-1:cds;Parent=Msa0250720-mRNA-1 |
| chr2_2 | CDS | 39805647 | 39805990 | 39805647 | ID=Msa0250720-mRNA-1:cds;Parent=Msa0250720-mRNA-1 |
| chr2_2 | CDS | 39805067 | 39805146 | 39805067 | ID=Msa0250720-mRNA-1:cds;Parent=Msa0250720-mRNA-1 |
| chr2_2 | CDS | 39804657 | 39804924 | 39804657 | ID=Msa0250720-mRNA-1:cds;Parent=Msa0250720-mRNA-1 |
| chr2_2 | three_prime_UTR | 39804559 | 39804656 | 39804559 | ID=Msa0250720-mRNA-1:three_prime_utr;Parent=Msa0250720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
