AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1343030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343030 MtrunA17_Chr2g0308611 95.166 331 11 3 1 329 1 328 0.0 571
Msa1343030 MtrunA17_Chr1g0175651 52.786 341 86 13 1 327 1 280 2.25e-85 259
Msa1343030 MtrunA17_Chr7g0258831 52.174 322 97 11 1 314 1 273 5.01e-83 253
Msa1343030 MtrunA17_Chr4g0055851 56.349 252 81 6 75 325 22 245 1.54e-75 234
Msa1343030 MtrunA17_Chr5g0399491 60.829 217 54 8 111 324 72 260 4.26e-70 220
Msa1343030 MtrunA17_Chr4g0054421 76.119 134 29 1 180 313 109 239 5.53e-67 211
Msa1343030 MtrunA17_Chr8g0335131 58.216 213 75 4 102 312 58 258 1.07e-62 202
Msa1343030 MtrunA17_Chr5g0400781 63.462 156 50 2 187 339 113 264 3.42e-61 196
Msa1343030 MtrunA17_Chr1g0151971 63.433 134 42 2 183 314 117 245 6.41e-53 176
Msa1343030 MtrunA17_Chr4g0044091 66.129 124 35 2 196 312 59 182 3.51e-49 163
Msa1343030 MtrunA17_Chr3g0135331 63.194 144 48 3 187 329 134 273 1.41e-44 154
Msa1343030 MtrunA17_Chr2g0299031 54.545 132 57 2 201 330 82 212 4.57e-38 135
Msa1343030 MtrunA17_Chr4g0071411 51.799 139 52 3 203 338 90 216 7.79e-35 127
Msa1343030 MtrunA17_Chr6g0450991 42.105 114 66 0 201 314 67 180 1.20e-18 84.7
Msa1343030 MtrunA17_Chr7g0217111 45.946 111 55 3 187 293 67 176 1.22e-18 84.3
Msa1343030 MtrunA17_Chr6g0453021 33.816 207 82 6 117 287 2 189 1.33e-18 84.3
Msa1343030 MtrunA17_Chr4g0060031 44.355 124 63 2 171 288 59 182 2.11e-18 84.7
Msa1343030 MtrunA17_Chr7g0265521 35.862 145 91 2 195 337 57 201 6.31e-18 81.6
Msa1343030 MtrunA17_Chr5g0416391 44.554 101 56 0 188 288 64 164 1.55e-17 81.6
Msa1343030 MtrunA17_Chr8g0362151 38.411 151 73 4 151 294 37 174 1.82e-17 81.3
Msa1343030 MtrunA17_Chr3g0119291 39.200 125 67 2 173 288 29 153 2.32e-17 80.5
Msa1343030 MtrunA17_Chr5g0415941 38.194 144 77 4 153 287 40 180 2.80e-17 81.3
Msa1343030 MtrunA17_Chr1g0179581 43.333 90 51 0 194 283 21 110 5.12e-17 75.9
Msa1343030 MtrunA17_Chr3g0123691 36.986 146 80 4 188 322 46 190 5.71e-17 80.1
Msa1343030 MtrunA17_Chr8g0381741 46.875 96 44 1 200 288 53 148 3.63e-16 78.2
Msa1343030 MtrunA17_Chr8g0362751 44.681 94 45 1 201 287 89 182 2.37e-15 75.5
Msa1343030 MtrunA17_Chr5g0403691 45.882 85 46 0 201 285 53 137 3.75e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343030 AT5G06710.1 50.151 331 136 8 1 322 1 311 1.09e-86 265
Msa1343030 AT3G60390.1 59.709 206 71 4 111 312 77 274 3.61e-68 216
Msa1343030 AT2G44910.1 55.405 222 70 3 104 316 78 279 2.41e-67 214
Msa1343030 AT4G37790.1 61.236 178 58 3 163 332 83 257 7.31e-65 207
Msa1343030 AT5G47370.1 51.481 270 96 11 72 331 17 261 1.71e-64 206
Msa1343030 AT4G16780.1 64.198 162 49 3 175 332 108 264 1.02e-60 196
Msa1343030 AT4G17460.1 51.709 234 91 7 90 319 39 254 2.39e-60 195
Msa1343030 AT2G22800.1 75.862 116 28 0 198 313 110 225 2.45e-59 192
Msa1343030 AT2G01430.1 57.042 142 59 2 187 328 125 264 1.92e-47 162
Msa1343030 AT1G70920.2 55.479 146 49 3 185 330 26 155 3.03e-41 142
Msa1343030 AT1G70920.1 55.479 146 49 3 185 330 56 185 3.90e-41 143
Msa1343030 AT5G06710.4 41.762 261 123 8 1 252 1 241 3.96e-40 142
Msa1343030 AT2G01430.2 63.636 66 24 0 187 252 125 190 7.06e-21 89.7
Msa1343030 AT5G06710.2 36.325 234 120 9 1 225 1 214 2.37e-19 86.3
Msa1343030 AT5G06710.3 36.325 234 120 9 1 225 1 214 2.37e-19 86.3
Msa1343030 AT5G03790.1 37.008 127 79 1 196 321 72 198 3.87e-18 82.8
Msa1343030 AT1G69780.1 44.554 101 56 0 188 288 72 172 2.39e-17 81.6
Msa1343030 AT1G26960.1 36.242 149 72 3 189 333 63 192 8.30e-17 79.3
Msa1343030 AT1G27045.5 51.852 81 38 1 187 266 10 90 3.60e-16 75.9
Msa1343030 AT1G27045.3 51.852 81 38 1 187 266 10 90 3.60e-16 75.9
Msa1343030 AT1G27045.2 51.852 81 38 1 187 266 2 82 4.23e-16 75.5
Msa1343030 AT1G27045.1 51.852 81 38 1 187 266 53 133 6.33e-16 76.3
Msa1343030 AT2G36610.1 40.196 102 53 1 196 289 66 167 8.64e-16 75.1
Msa1343030 AT5G15150.1 40.909 110 54 2 185 287 103 208 8.92e-16 77.4
Msa1343030 AT1G27045.4 51.852 81 38 1 187 266 53 133 1.23e-15 75.9
Msa1343030 AT2G18550.1 37.671 146 84 2 179 324 40 178 1.67e-15 75.1
Msa1343030 AT3G01220.1 42.453 106 55 2 189 290 77 180 1.95e-15 75.9
Msa1343030 AT3G01470.1 45.652 92 50 0 201 292 68 159 1.99e-15 75.9
Msa1343030 AT5G03790.2 37.190 121 68 1 196 308 72 192 3.22e-15 73.6
Msa1343030 AT5G65310.2 40.909 110 55 2 189 288 39 148 4.02e-15 75.1
Msa1343030 AT5G65310.1 40.909 110 55 2 189 288 57 166 4.38e-15 75.5
Msa1343030 AT2G22430.1 45.455 99 50 1 197 291 58 156 9.55e-15 74.3
Msa1343030 AT4G40060.1 39.669 121 67 2 175 291 35 153 3.06e-14 72.8
Msa1343030 AT4G36740.1 43.011 93 52 1 195 287 50 141 1.28e-12 66.6
Msa1343030 AT4G36740.2 43.011 93 52 1 195 287 51 142 1.31e-12 66.6
Msa1343030 AT2G46680.2 40.659 91 54 0 196 286 27 117 2.87e-12 66.2
Msa1343030 AT2G46680.1 40.659 91 54 0 196 286 27 117 3.29e-12 66.2

Find 86 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACCTTGCTCTTCTATTT+TGG 0.134685 tig0006145:+36587 Msa1343030:intergenic
AAAGCCTCTAATTGGATTAA+TGG 0.207556 tig0006145:-37955 Msa1343030:CDS
GACTCTTCAAAGCCTCTAAT+TGG 0.231354 tig0006145:-37963 Msa1343030:CDS
CTTTGTGTAGTACTAATAAT+TGG 0.238752 tig0006145:+37867 Msa1343030:intergenic
GGTAGGAGTTTGAGTGGTTC+AGG 0.247485 tig0006145:-37360 Msa1343030:CDS
TTGATTATATAGTGAGTTAT+TGG 0.248916 tig0006145:-36130 Msa1343030:three_prime_UTR
AGTTGATGCAATACAGGATT+AGG 0.292885 tig0006145:+37765 Msa1343030:intergenic
AAGAAGATGCTGCACTATTC+GGG 0.307898 tig0006145:+37424 Msa1343030:intergenic
AATTTATTATCAACCGAGTT+TGG 0.329723 tig0006145:-37534 Msa1343030:CDS
GAAGCCTAAGCCAAGTTCTT+TGG 0.340212 tig0006145:+37911 Msa1343030:intergenic
AAAGAAGATGCTGCACTATT+CGG 0.346517 tig0006145:+37423 Msa1343030:intergenic
ACCGGCGACGGTGGTTGTTA+TGG 0.373808 tig0006145:-37475 Msa1343030:CDS
TTCAACACCACTTTATCAAT+TGG 0.386708 tig0006145:-37891 Msa1343030:CDS
GAAGAAACTTAGGCTCTCTA+AGG 0.396097 tig0006145:-37232 Msa1343030:CDS
TTTGCTCCCTATGTTCCATT+GGG 0.404706 tig0006145:-36035 Msa1343030:three_prime_UTR
CATCAAGCTTCCAAAGAACT+TGG 0.420365 tig0006145:-37921 Msa1343030:CDS
TGGAGGTTCTTCGAGGGGAT+TGG 0.420743 tig0006145:-37514 Msa1343030:CDS
AGATCAAGTTGATGCAATAC+AGG 0.427277 tig0006145:+37759 Msa1343030:intergenic
CACATAGTTAAAGTAGTTGC+TGG 0.454337 tig0006145:+36285 Msa1343030:intergenic
TATATAATCAATTCCAATGC+TGG 0.455649 tig0006145:+36142 Msa1343030:intergenic
GAAGTAGAGAAAAGAGATCA+TGG 0.457988 tig0006145:-38006 Msa1343030:exon
CCCTATGTTCCATTGGGAGT+TGG 0.459096 tig0006145:-36029 Msa1343030:three_prime_UTR
AAACACTAACAGAAGAGAAT+AGG 0.466193 tig0006145:-36374 Msa1343030:CDS
GCTTCCAAAGAACTTGGCTT+AGG 0.468530 tig0006145:-37915 Msa1343030:CDS
AATTGGACCAATTGATAAAG+TGG 0.476543 tig0006145:+37884 Msa1343030:intergenic
ATGGAGCTAGGTTTAAGCTT+AGG 0.480018 tig0006145:-37987 Msa1343030:CDS
GAAGAATGTCAGTGGGGAAA+GGG 0.481044 tig0006145:+38086 Msa1343030:intergenic
CGTGGTTCCACCGGCGACGG+TGG 0.481596 tig0006145:-37484 Msa1343030:CDS
GAGGAATATAGAGAGAGAAA+AGG 0.487674 tig0006145:+38060 Msa1343030:intergenic
TTCCTCAACTCTCATTCCCA+TGG 0.491801 tig0006145:-37734 Msa1343030:CDS
TTTGGAACCAGACTTCTACT+TGG 0.497117 tig0006145:+36605 Msa1343030:intergenic
AATACTAGTGCCACAATCAA+TGG 0.499863 tig0006145:-36210 Msa1343030:CDS
GCTGGTAATTGCATGTTGAA+TGG 0.500603 tig0006145:+36303 Msa1343030:intergenic
AGTATTAGTGACTGAGGAAG+TGG 0.500829 tig0006145:+36227 Msa1343030:intergenic
GCCCTCGCCAAGTAGAAGTC+TGG 0.501753 tig0006145:-36612 Msa1343030:CDS
CCAACTCCCAATGGAACATA+GGG 0.503643 tig0006145:+36029 Msa1343030:intergenic
CCGAGTTTGGAGGTTCTTCG+AGG 0.505267 tig0006145:-37521 Msa1343030:CDS
TGAAGAATGTCAGTGGGGAA+AGG 0.505627 tig0006145:+38085 Msa1343030:intergenic
CGAGTTTGGAGGTTCTTCGA+GGG 0.513702 tig0006145:-37520 Msa1343030:CDS
GTAACACAAGGAAGAAACTT+AGG 0.517327 tig0006145:-37242 Msa1343030:CDS
AGAAGAAGAAAAGACTCAAA+GGG 0.521032 tig0006145:-37820 Msa1343030:CDS
TGGAATCCTCCTTCTCAAAA+CGG 0.522286 tig0006145:-37714 Msa1343030:intron
AAGAAGAAGAAAAGACTCAA+AGG 0.532446 tig0006145:-37821 Msa1343030:CDS
GATAACTGTGGTGTTGGTAA+TGG 0.532740 tig0006145:-37264 Msa1343030:CDS
GGATGTGAACGTGGTTCCAC+CGG 0.533881 tig0006145:-37493 Msa1343030:CDS
GTTGCAACACGTTCACAAGA+AGG 0.536936 tig0006145:+36261 Msa1343030:intergenic
ACCAACTCCCAATGGAACAT+AGG 0.537837 tig0006145:+36028 Msa1343030:intergenic
CCTCGAAGAACCTCCAAACT+CGG 0.543733 tig0006145:+37521 Msa1343030:intergenic
TTATTATCAACCGAGTTTGG+AGG 0.547939 tig0006145:-37531 Msa1343030:CDS
GCCATAACAACCACCGTCGC+CGG 0.549269 tig0006145:+37474 Msa1343030:intergenic
AGGAGTTTGAGTGGTTCAGG+AGG 0.550877 tig0006145:-37357 Msa1343030:CDS
TTGCAACACGTTCACAAGAA+GGG 0.553307 tig0006145:+36262 Msa1343030:intergenic
ATGTACAGTCGAGGAGGAAG+TGG 0.554028 tig0006145:-37384 Msa1343030:CDS
AGTGGTGGTAGGAGTTTGAG+TGG 0.555829 tig0006145:-37366 Msa1343030:CDS
AGAAAAGAGATCATGGAGCT+AGG 0.556425 tig0006145:-37999 Msa1343030:exon
AAGGAATGAAGAATGTCAGT+GGG 0.565068 tig0006145:+38079 Msa1343030:intergenic
CACTAACAGAAGAGAATAGG+AGG 0.565496 tig0006145:-36371 Msa1343030:CDS
GAAGATGATAACTGTGGTGT+TGG 0.570473 tig0006145:-37270 Msa1343030:CDS
ATGGTGAAGGGTATGATCAA+AGG 0.575898 tig0006145:-37314 Msa1343030:CDS
TTTGAGAAGGAGGATTCCAT+GGG 0.580464 tig0006145:+37718 Msa1343030:intergenic
GGAAGAAGAAACACACAAAG+TGG 0.587547 tig0006145:+38036 Msa1343030:intergenic
AACCAGACTTCTACTTGGCG+AGG 0.590253 tig0006145:+36610 Msa1343030:intergenic
AATTCTATACCAACTCCCAA+TGG 0.591829 tig0006145:+36020 Msa1343030:intergenic
ATAACAACCACCGTCGCCGG+TGG 0.592195 tig0006145:+37477 Msa1343030:intergenic
GAACGTGGTTCCACCGGCGA+CGG 0.601039 tig0006145:-37487 Msa1343030:CDS
AGTTCTTTGGAAGCTTGATG+AGG 0.611059 tig0006145:+37924 Msa1343030:intergenic
TACAGTCGAGGAGGAAGTGG+TGG 0.618589 tig0006145:-37381 Msa1343030:CDS
AAAGGAATGAAGAATGTCAG+TGG 0.623607 tig0006145:+38078 Msa1343030:intergenic
ATTGTTATTACCATTGATTG+TGG 0.625260 tig0006145:+36200 Msa1343030:intergenic
TTCCATGGGAATGAGAGTTG+AGG 0.625263 tig0006145:+37732 Msa1343030:intergenic
ACCAGACTTCTACTTGGCGA+GGG 0.626726 tig0006145:+36611 Msa1343030:intergenic
GAGGGGATTGGATGTGAACG+TGG 0.631637 tig0006145:-37502 Msa1343030:CDS
TGTTATGGCGAACGATGAGA+TGG 0.634044 tig0006145:-37460 Msa1343030:CDS
GTCGAGGAGGAAGTGGTGGT+AGG 0.639483 tig0006145:-37377 Msa1343030:CDS
GGAGTTTGAGTGGTTCAGGA+GGG 0.643496 tig0006145:-37356 Msa1343030:CDS
GGTTCCAAAATAGAAGAGCA+AGG 0.645595 tig0006145:-36591 Msa1343030:intron
GAGTTTGGAGGTTCTTCGAG+GGG 0.648065 tig0006145:-37519 Msa1343030:CDS
AAGAAACACACAAAGTGGAG+AGG 0.650616 tig0006145:+38041 Msa1343030:intergenic
AGAAGATGCTGCACTATTCG+GGG 0.651031 tig0006145:+37425 Msa1343030:intergenic
GGCACTAGTATTAGTGACTG+AGG 0.651032 tig0006145:+36221 Msa1343030:intergenic
GATCTATGCATGTACAGTCG+AGG 0.663378 tig0006145:-37393 Msa1343030:CDS
AGAGAATAGGAGGCTACACA+AGG 0.664591 tig0006145:-36361 Msa1343030:CDS
AGGAATGAAGAATGTCAGTG+GGG 0.678415 tig0006145:+38080 Msa1343030:intergenic
CTATGCATGTACAGTCGAGG+AGG 0.685551 tig0006145:-37390 Msa1343030:CDS
AGTGATGAAGATGATAACTG+TGG 0.745381 tig0006145:-37276 Msa1343030:CDS
GTGTTGGTAATGGTAACACA+AGG 0.792389 tig0006145:-37254 Msa1343030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAGATTTTTTTTTG+TGG + tig0006145:37073-37092 Msa1343030:intergenic 10.0%
!! ACAAAATAAAACAAATAAAT+GGG + tig0006145:37390-37409 Msa1343030:intergenic 10.0%
!! AACAAAATAAAACAAATAAA+TGG + tig0006145:37391-37410 Msa1343030:intergenic 10.0%
!!! TTTTTTGTTTAAAATACTAA+TGG - tig0006145:37416-37435 Msa1343030:CDS 10.0%
!!! ATTGATTTAATTTTGTATAT+AGG - tig0006145:38004-38023 Msa1343030:exon 10.0%
!!! TTGATTTAATTTTGTATATA+GGG - tig0006145:38005-38024 Msa1343030:exon 10.0%
!!! TTTTTATAGATTTTTTTTTG+TGG + tig0006145:37073-37092 Msa1343030:intergenic 10.0%
!! ACAAAATAAAACAAATAAAT+GGG + tig0006145:37390-37409 Msa1343030:intergenic 10.0%
!! AACAAAATAAAACAAATAAA+TGG + tig0006145:37391-37410 Msa1343030:intergenic 10.0%
!!! TTTTTTGTTTAAAATACTAA+TGG - tig0006145:37416-37435 Msa1343030:CDS 10.0%
!!! ATTGATTTAATTTTGTATAT+AGG - tig0006145:38004-38023 Msa1343030:exon 10.0%
!!! TTGATTTAATTTTGTATATA+GGG - tig0006145:38005-38024 Msa1343030:exon 10.0%
!!! TAAAATATTGGTAACTTTTT+AGG + tig0006145:36434-36453 Msa1343030:intergenic 15.0%
!! AAGAGTAAAAGATAAAATAT+TGG + tig0006145:36446-36465 Msa1343030:intergenic 15.0%
!!! ATTATTGTTTTTGCAATATT+AGG - tig0006145:36551-36570 Msa1343030:intron 15.0%
!!! ATAGAATATTTTCTTTTGAA+AGG + tig0006145:37175-37194 Msa1343030:intergenic 15.0%
!! AATATTCTATGTAATGTTAT+TGG - tig0006145:37185-37204 Msa1343030:CDS 15.0%
!! CTATATATTAGAGATATATT+TGG + tig0006145:37225-37244 Msa1343030:intergenic 15.0%
!! ATATCTCTAATATATAGTAT+TGG - tig0006145:37228-37247 Msa1343030:CDS 15.0%
!!! CAACTTTATTTTTTAAACTT+TGG - tig0006145:37612-37631 Msa1343030:intron 15.0%
!!! TAAAATATTGGTAACTTTTT+AGG + tig0006145:36434-36453 Msa1343030:intergenic 15.0%
!! AAGAGTAAAAGATAAAATAT+TGG + tig0006145:36446-36465 Msa1343030:intergenic 15.0%
!!! ATTATTGTTTTTGCAATATT+AGG - tig0006145:36551-36570 Msa1343030:intron 15.0%
!!! ATAGAATATTTTCTTTTGAA+AGG + tig0006145:37175-37194 Msa1343030:intergenic 15.0%
!! AATATTCTATGTAATGTTAT+TGG - tig0006145:37185-37204 Msa1343030:CDS 15.0%
!! CTATATATTAGAGATATATT+TGG + tig0006145:37225-37244 Msa1343030:intergenic 15.0%
!! ATATCTCTAATATATAGTAT+TGG - tig0006145:37228-37247 Msa1343030:CDS 15.0%
!!! CAACTTTATTTTTTAAACTT+TGG - tig0006145:37612-37631 Msa1343030:intron 15.0%
!!! TAATCCTATTTTAAAAACAC+TGG + tig0006145:36513-36532 Msa1343030:intergenic 20.0%
!!! TATAGATTTTTTTTTGTGGT+CGG + tig0006145:37069-37088 Msa1343030:intergenic 20.0%
!!! TTGTTTAAAATACTAATGGT+TGG - tig0006145:37420-37439 Msa1343030:CDS 20.0%
!! TTGATTATATAGTGAGTTAT+TGG - tig0006145:37979-37998 Msa1343030:CDS 20.0%
!!! TAATCCTATTTTAAAAACAC+TGG + tig0006145:36513-36532 Msa1343030:intergenic 20.0%
!!! TATAGATTTTTTTTTGTGGT+CGG + tig0006145:37069-37088 Msa1343030:intergenic 20.0%
!!! TTGTTTAAAATACTAATGGT+TGG - tig0006145:37420-37439 Msa1343030:CDS 20.0%
!! TTGATTATATAGTGAGTTAT+TGG - tig0006145:37979-37998 Msa1343030:CDS 20.0%
!! TTTTCCATTAATCCAATTAG+AGG + tig0006145:36161-36180 Msa1343030:intergenic 25.0%
! CTTTGTGTAGTACTAATAAT+TGG + tig0006145:36245-36264 Msa1343030:intergenic 25.0%
!!! GAAACCAGTGTTTTTAAAAT+AGG - tig0006145:36506-36525 Msa1343030:intron 25.0%
! AATTTATTATCAACCGAGTT+TGG - tig0006145:36575-36594 Msa1343030:intron 25.0%
! GAGAAAAAAAAACACATACA+GGG + tig0006145:36952-36971 Msa1343030:intergenic 25.0%
! AGAGAAAAAAAAACACATAC+AGG + tig0006145:36953-36972 Msa1343030:intergenic 25.0%
! TGCATAAAAATATGCAAAGT+CGG - tig0006145:37034-37053 Msa1343030:intron 25.0%
!!! ATAGATTTTTTTTTGTGGTC+GGG + tig0006145:37068-37087 Msa1343030:intergenic 25.0%
!! ATTTTATGACAATTCTTCCT+TGG - tig0006145:37363-37382 Msa1343030:CDS 25.0%
! AAAATTATAGTCAAATGCAG+TGG - tig0006145:37586-37605 Msa1343030:intron 25.0%
! ATAAATTTATGTTCTGATGC+AGG - tig0006145:37660-37679 Msa1343030:intron 25.0%
!! ATTGTTATTACCATTGATTG+TGG + tig0006145:37912-37931 Msa1343030:intergenic 25.0%
! TATATAATCAATTCCAATGC+TGG + tig0006145:37970-37989 Msa1343030:intergenic 25.0%
!! TTTTCCATTAATCCAATTAG+AGG + tig0006145:36161-36180 Msa1343030:intergenic 25.0%
! CTTTGTGTAGTACTAATAAT+TGG + tig0006145:36245-36264 Msa1343030:intergenic 25.0%
!!! GAAACCAGTGTTTTTAAAAT+AGG - tig0006145:36506-36525 Msa1343030:intron 25.0%
! AATTTATTATCAACCGAGTT+TGG - tig0006145:36575-36594 Msa1343030:intron 25.0%
! GAGAAAAAAAAACACATACA+GGG + tig0006145:36952-36971 Msa1343030:intergenic 25.0%
! AGAGAAAAAAAAACACATAC+AGG + tig0006145:36953-36972 Msa1343030:intergenic 25.0%
! TGCATAAAAATATGCAAAGT+CGG - tig0006145:37034-37053 Msa1343030:intron 25.0%
!!! ATAGATTTTTTTTTGTGGTC+GGG + tig0006145:37068-37087 Msa1343030:intergenic 25.0%
!! ATTTTATGACAATTCTTCCT+TGG - tig0006145:37363-37382 Msa1343030:CDS 25.0%
! AAAATTATAGTCAAATGCAG+TGG - tig0006145:37586-37605 Msa1343030:intron 25.0%
! ATAAATTTATGTTCTGATGC+AGG - tig0006145:37660-37679 Msa1343030:intron 25.0%
!! ATTGTTATTACCATTGATTG+TGG + tig0006145:37912-37931 Msa1343030:intergenic 25.0%
! TATATAATCAATTCCAATGC+TGG + tig0006145:37970-37989 Msa1343030:intergenic 25.0%
AAAGCCTCTAATTGGATTAA+TGG - tig0006145:36154-36173 Msa1343030:three_prime_UTR 30.0%
TTCAACACCACTTTATCAAT+TGG - tig0006145:36218-36237 Msa1343030:CDS 30.0%
AATTGGACCAATTGATAAAG+TGG + tig0006145:36228-36247 Msa1343030:intergenic 30.0%
AAGAAGAAGAAAAGACTCAA+AGG - tig0006145:36288-36307 Msa1343030:CDS 30.0%
AGAAGAAGAAAAGACTCAAA+GGG - tig0006145:36289-36308 Msa1343030:CDS 30.0%
!! TTGGTAACTTTTTAGGAAGT+GGG + tig0006145:36427-36446 Msa1343030:intergenic 30.0%
!! ATTGGTAACTTTTTAGGAAG+TGG + tig0006145:36428-36447 Msa1343030:intergenic 30.0%
GCATAAAAATATGCAAAGTC+GGG - tig0006145:37035-37054 Msa1343030:intron 30.0%
CATAAAAATATGCAAAGTCG+GGG - tig0006145:37036-37055 Msa1343030:intron 30.0%
TAGTATGTGTGGTATTAATC+TGG + tig0006145:37102-37121 Msa1343030:intergenic 30.0%
AAAACAAATAAATGGGTCCA+AGG + tig0006145:37383-37402 Msa1343030:intergenic 30.0%
AAACACTAACAGAAGAGAAT+AGG - tig0006145:37735-37754 Msa1343030:CDS 30.0%
AAAGCCTCTAATTGGATTAA+TGG - tig0006145:36154-36173 Msa1343030:three_prime_UTR 30.0%
TTCAACACCACTTTATCAAT+TGG - tig0006145:36218-36237 Msa1343030:CDS 30.0%
AATTGGACCAATTGATAAAG+TGG + tig0006145:36228-36247 Msa1343030:intergenic 30.0%
AAGAAGAAGAAAAGACTCAA+AGG - tig0006145:36288-36307 Msa1343030:CDS 30.0%
AGAAGAAGAAAAGACTCAAA+GGG - tig0006145:36289-36308 Msa1343030:CDS 30.0%
!! TTGGTAACTTTTTAGGAAGT+GGG + tig0006145:36427-36446 Msa1343030:intergenic 30.0%
!! ATTGGTAACTTTTTAGGAAG+TGG + tig0006145:36428-36447 Msa1343030:intergenic 30.0%
GCATAAAAATATGCAAAGTC+GGG - tig0006145:37035-37054 Msa1343030:intron 30.0%
CATAAAAATATGCAAAGTCG+GGG - tig0006145:37036-37055 Msa1343030:intron 30.0%
TAGTATGTGTGGTATTAATC+TGG + tig0006145:37102-37121 Msa1343030:intergenic 30.0%
AAAACAAATAAATGGGTCCA+AGG + tig0006145:37383-37402 Msa1343030:intergenic 30.0%
AAACACTAACAGAAGAGAAT+AGG - tig0006145:37735-37754 Msa1343030:CDS 30.0%
AAGGAATGAAGAATGTCAGT+GGG + tig0006145:36033-36052 Msa0977420:intergenic 35.0%
AAAGGAATGAAGAATGTCAG+TGG + tig0006145:36034-36053 Msa0977420:intergenic 35.0%
GAGGAATATAGAGAGAGAAA+AGG + tig0006145:36052-36071 Msa0977420:intergenic 35.0%
! CTTTTCTCTACTTCTGCATA+GGG + tig0006145:36097-36116 Msa0977420:intergenic 35.0%
! TCTTTTCTCTACTTCTGCAT+AGG + tig0006145:36098-36117 Msa0977420:intergenic 35.0%
GAAGTAGAGAAAAGAGATCA+TGG - tig0006145:36103-36122 Msa1343030:three_prime_UTR 35.0%
! AGTTGATGCAATACAGGATT+AGG + tig0006145:36347-36366 Msa1343030:intergenic 35.0%
!! AGATCAAGTTGATGCAATAC+AGG + tig0006145:36353-36372 Msa1343030:intergenic 35.0%
TTATTATCAACCGAGTTTGG+AGG - tig0006145:36578-36597 Msa1343030:intron 35.0%
AAAGAAGATGCTGCACTATT+CGG + tig0006145:36689-36708 Msa1343030:intergenic 35.0%
! AACAAGAGAGAGTTTTCTGA+TGG - tig0006145:36776-36795 Msa1343030:intron 35.0%
AGTGATGAAGATGATAACTG+TGG - tig0006145:36833-36852 Msa1343030:intron 35.0%
GTAACACAAGGAAGAAACTT+AGG - tig0006145:36867-36886 Msa1343030:intron 35.0%
TAAACTGAGTTATGCTCAAG+AGG + tig0006145:37007-37026 Msa1343030:intergenic 35.0%
CTTGAGCATAACTCAGTTTA+TGG - tig0006145:37007-37026 Msa1343030:intron 35.0%
TATCGACATGTTAGTATGTG+TGG + tig0006145:37113-37132 Msa1343030:intergenic 35.0%
TGTGGTGTAGAAACAAAAAC+TGG - tig0006145:37450-37469 Msa1343030:CDS 35.0%
! TGTACCTTGCTCTTCTATTT+TGG + tig0006145:37525-37544 Msa1343030:intergenic 35.0%
CACATAGTTAAAGTAGTTGC+TGG + tig0006145:37827-37846 Msa1343030:intergenic 35.0%
AATACTAGTGCCACAATCAA+TGG - tig0006145:37899-37918 Msa1343030:CDS 35.0%
!!! AATTCCAATGCTGGTTTTTG+AGG + tig0006145:37961-37980 Msa1343030:intergenic 35.0%
AATTCTATACCAACTCCCAA+TGG + tig0006145:38092-38111 Msa1343030:intergenic 35.0%
AAGGAATGAAGAATGTCAGT+GGG + tig0006145:36033-36052 Msa1343030:intergenic 35.0%
AAAGGAATGAAGAATGTCAG+TGG + tig0006145:36034-36053 Msa1343030:intergenic 35.0%
GAGGAATATAGAGAGAGAAA+AGG + tig0006145:36052-36071 Msa1343030:intergenic 35.0%
! CTTTTCTCTACTTCTGCATA+GGG + tig0006145:36097-36116 Msa1343030:intergenic 35.0%
! TCTTTTCTCTACTTCTGCAT+AGG + tig0006145:36098-36117 Msa1343030:intergenic 35.0%
GAAGTAGAGAAAAGAGATCA+TGG - tig0006145:36103-36122 Msa1343030:three_prime_UTR 35.0%
! AGTTGATGCAATACAGGATT+AGG + tig0006145:36347-36366 Msa1343030:intergenic 35.0%
!! AGATCAAGTTGATGCAATAC+AGG + tig0006145:36353-36372 Msa1343030:intergenic 35.0%
TTATTATCAACCGAGTTTGG+AGG - tig0006145:36578-36597 Msa1343030:intron 35.0%
AAAGAAGATGCTGCACTATT+CGG + tig0006145:36689-36708 Msa1343030:intergenic 35.0%
! AACAAGAGAGAGTTTTCTGA+TGG - tig0006145:36776-36795 Msa1343030:intron 35.0%
AGTGATGAAGATGATAACTG+TGG - tig0006145:36833-36852 Msa1343030:intron 35.0%
GTAACACAAGGAAGAAACTT+AGG - tig0006145:36867-36886 Msa1343030:intron 35.0%
TAAACTGAGTTATGCTCAAG+AGG + tig0006145:37007-37026 Msa1343030:intergenic 35.0%
CTTGAGCATAACTCAGTTTA+TGG - tig0006145:37007-37026 Msa1343030:intron 35.0%
TATCGACATGTTAGTATGTG+TGG + tig0006145:37113-37132 Msa1343030:intergenic 35.0%
TGTGGTGTAGAAACAAAAAC+TGG - tig0006145:37450-37469 Msa1343030:CDS 35.0%
! TGTACCTTGCTCTTCTATTT+TGG + tig0006145:37525-37544 Msa1343030:intergenic 35.0%
CACATAGTTAAAGTAGTTGC+TGG + tig0006145:37827-37846 Msa1343030:intergenic 35.0%
AATACTAGTGCCACAATCAA+TGG - tig0006145:37899-37918 Msa1343030:CDS 35.0%
!!! AATTCCAATGCTGGTTTTTG+AGG + tig0006145:37961-37980 Msa1343030:intergenic 35.0%
AATTCTATACCAACTCCCAA+TGG + tig0006145:38092-38111 Msa1343030:intergenic 35.0%
AGGAATGAAGAATGTCAGTG+GGG + tig0006145:36032-36051 Msa0977420:intergenic 40.0%
AAGAAACACACAAAGTGGAG+AGG + tig0006145:36071-36090 Msa0977420:intergenic 40.0%
GGAAGAAGAAACACACAAAG+TGG + tig0006145:36076-36095 Msa0977420:intergenic 40.0%
AGAAAAGAGATCATGGAGCT+AGG - tig0006145:36110-36129 Msa1343030:three_prime_UTR 40.0%
ATGGAGCTAGGTTTAAGCTT+AGG - tig0006145:36122-36141 Msa1343030:three_prime_UTR 40.0%
GACTCTTCAAAGCCTCTAAT+TGG - tig0006145:36146-36165 Msa1343030:three_prime_UTR 40.0%
! AGTTCTTTGGAAGCTTGATG+AGG + tig0006145:36188-36207 Msa1343030:intergenic 40.0%
CATCAAGCTTCCAAAGAACT+TGG - tig0006145:36188-36207 Msa1343030:CDS 40.0%
TTTGAGAAGGAGGATTCCAT+GGG + tig0006145:36394-36413 Msa1343030:intergenic 40.0%
!! TTTTGAGAAGGAGGATTCCA+TGG + tig0006145:36395-36414 Msa1343030:intergenic 40.0%
TGGAATCCTCCTTCTCAAAA+CGG - tig0006145:36395-36414 Msa1343030:CDS 40.0%
!!! TTGTTACCGTTTTGAGAAGG+AGG + tig0006145:36404-36423 Msa1343030:intergenic 40.0%
AAGAAGATGCTGCACTATTC+GGG + tig0006145:36688-36707 Msa1343030:intergenic 40.0%
! TGCAGCATCTTCTTTTCAGA+TGG - tig0006145:36694-36713 Msa1343030:intron 40.0%
!! AGAGAGTTTTCTGATGGTGA+AGG - tig0006145:36782-36801 Msa1343030:intron 40.0%
!! GAGAGTTTTCTGATGGTGAA+GGG - tig0006145:36783-36802 Msa1343030:intron 40.0%
! ATGGTGAAGGGTATGATCAA+AGG - tig0006145:36795-36814 Msa1343030:intron 40.0%
GAAGATGATAACTGTGGTGT+TGG - tig0006145:36839-36858 Msa1343030:intron 40.0%
!! GATAACTGTGGTGTTGGTAA+TGG - tig0006145:36845-36864 Msa1343030:intron 40.0%
!! GTGTTGGTAATGGTAACACA+AGG - tig0006145:36855-36874 Msa1343030:intron 40.0%
GAAGAAACTTAGGCTCTCTA+AGG - tig0006145:36877-36896 Msa1343030:intron 40.0%
CTAATGGTTGGACACAATTG+TGG - tig0006145:37432-37451 Msa1343030:CDS 40.0%
! TTTGGAACCAGACTTCTACT+TGG + tig0006145:37507-37526 Msa1343030:intergenic 40.0%
GGTTCCAAAATAGAAGAGCA+AGG - tig0006145:37518-37537 Msa1343030:CDS 40.0%
CACTAACAGAAGAGAATAGG+AGG - tig0006145:37738-37757 Msa1343030:CDS 40.0%
GCTGGTAATTGCATGTTGAA+TGG + tig0006145:37809-37828 Msa1343030:intergenic 40.0%
TTGCAACACGTTCACAAGAA+GGG + tig0006145:37850-37869 Msa1343030:intergenic 40.0%
AGTATTAGTGACTGAGGAAG+TGG + tig0006145:37885-37904 Msa1343030:intergenic 40.0%
!!! TTTTGAGGTGGAATCATCAC+TGG + tig0006145:37946-37965 Msa1343030:intergenic 40.0%
! TTTTGCTCCCTATGTTCCAT+TGG - tig0006145:38073-38092 Msa1343030:five_prime_UTR 40.0%
TTTGCTCCCTATGTTCCATT+GGG - tig0006145:38074-38093 Msa1343030:five_prime_UTR 40.0%
AGGAATGAAGAATGTCAGTG+GGG + tig0006145:36032-36051 Msa1343030:intergenic 40.0%
AAGAAACACACAAAGTGGAG+AGG + tig0006145:36071-36090 Msa1343030:intergenic 40.0%
GGAAGAAGAAACACACAAAG+TGG + tig0006145:36076-36095 Msa1343030:intergenic 40.0%
AGAAAAGAGATCATGGAGCT+AGG - tig0006145:36110-36129 Msa1343030:three_prime_UTR 40.0%
ATGGAGCTAGGTTTAAGCTT+AGG - tig0006145:36122-36141 Msa1343030:three_prime_UTR 40.0%
GACTCTTCAAAGCCTCTAAT+TGG - tig0006145:36146-36165 Msa1343030:three_prime_UTR 40.0%
! AGTTCTTTGGAAGCTTGATG+AGG + tig0006145:36188-36207 Msa1343030:intergenic 40.0%
CATCAAGCTTCCAAAGAACT+TGG - tig0006145:36188-36207 Msa1343030:CDS 40.0%
TTTGAGAAGGAGGATTCCAT+GGG + tig0006145:36394-36413 Msa1343030:intergenic 40.0%
!! TTTTGAGAAGGAGGATTCCA+TGG + tig0006145:36395-36414 Msa1343030:intergenic 40.0%
TGGAATCCTCCTTCTCAAAA+CGG - tig0006145:36395-36414 Msa1343030:CDS 40.0%
!!! TTGTTACCGTTTTGAGAAGG+AGG + tig0006145:36404-36423 Msa1343030:intergenic 40.0%
AAGAAGATGCTGCACTATTC+GGG + tig0006145:36688-36707 Msa1343030:intergenic 40.0%
! TGCAGCATCTTCTTTTCAGA+TGG - tig0006145:36694-36713 Msa1343030:intron 40.0%
!! AGAGAGTTTTCTGATGGTGA+AGG - tig0006145:36782-36801 Msa1343030:intron 40.0%
!! GAGAGTTTTCTGATGGTGAA+GGG - tig0006145:36783-36802 Msa1343030:intron 40.0%
! ATGGTGAAGGGTATGATCAA+AGG - tig0006145:36795-36814 Msa1343030:intron 40.0%
GAAGATGATAACTGTGGTGT+TGG - tig0006145:36839-36858 Msa1343030:intron 40.0%
!! GATAACTGTGGTGTTGGTAA+TGG - tig0006145:36845-36864 Msa1343030:intron 40.0%
!! GTGTTGGTAATGGTAACACA+AGG - tig0006145:36855-36874 Msa1343030:intron 40.0%
GAAGAAACTTAGGCTCTCTA+AGG - tig0006145:36877-36896 Msa1343030:intron 40.0%
CTAATGGTTGGACACAATTG+TGG - tig0006145:37432-37451 Msa1343030:CDS 40.0%
! TTTGGAACCAGACTTCTACT+TGG + tig0006145:37507-37526 Msa1343030:intergenic 40.0%
GGTTCCAAAATAGAAGAGCA+AGG - tig0006145:37518-37537 Msa1343030:CDS 40.0%
CACTAACAGAAGAGAATAGG+AGG - tig0006145:37738-37757 Msa1343030:CDS 40.0%
GCTGGTAATTGCATGTTGAA+TGG + tig0006145:37809-37828 Msa1343030:intergenic 40.0%
TTGCAACACGTTCACAAGAA+GGG + tig0006145:37850-37869 Msa1343030:intergenic 40.0%
AGTATTAGTGACTGAGGAAG+TGG + tig0006145:37885-37904 Msa1343030:intergenic 40.0%
!!! TTTTGAGGTGGAATCATCAC+TGG + tig0006145:37946-37965 Msa1343030:intergenic 40.0%
! TTTTGCTCCCTATGTTCCAT+TGG - tig0006145:38073-38092 Msa1343030:five_prime_UTR 40.0%
TTTGCTCCCTATGTTCCATT+GGG - tig0006145:38074-38093 Msa1343030:five_prime_UTR 40.0%
GAAGAATGTCAGTGGGGAAA+GGG + tig0006145:36026-36045 Msa0977420:intergenic 45.0%
TGAAGAATGTCAGTGGGGAA+AGG + tig0006145:36027-36046 Msa0977420:intergenic 45.0%
GCTTCCAAAGAACTTGGCTT+AGG - tig0006145:36194-36213 Msa1343030:CDS 45.0%
GAAGCCTAAGCCAAGTTCTT+TGG + tig0006145:36201-36220 Msa1343030:intergenic 45.0%
TTCCTCAACTCTCATTCCCA+TGG - tig0006145:36375-36394 Msa1343030:CDS 45.0%
TTCCATGGGAATGAGAGTTG+AGG + tig0006145:36380-36399 Msa1343030:intergenic 45.0%
!!! GGGTTGTTACCGTTTTGAGA+AGG + tig0006145:36407-36426 Msa1343030:intergenic 45.0%
TGTTATGGCGAACGATGAGA+TGG - tig0006145:36649-36668 Msa1343030:CDS 45.0%
AGAAGATGCTGCACTATTCG+GGG + tig0006145:36687-36706 Msa1343030:intergenic 45.0%
GATCTATGCATGTACAGTCG+AGG - tig0006145:36716-36735 Msa1343030:intron 45.0%
AGAGAATAGGAGGCTACACA+AGG - tig0006145:37748-37767 Msa1343030:CDS 45.0%
GTTGCAACACGTTCACAAGA+AGG + tig0006145:37851-37870 Msa1343030:intergenic 45.0%
GGCACTAGTATTAGTGACTG+AGG + tig0006145:37891-37910 Msa1343030:intergenic 45.0%
TCCACCTCAAAAACCAGCAT+TGG - tig0006145:37954-37973 Msa1343030:CDS 45.0%
!!! TCCAATGCTGGTTTTTGAGG+TGG + tig0006145:37958-37977 Msa1343030:intergenic 45.0%
CCAACTCCCAATGGAACATA+GGG + tig0006145:38083-38102 Msa1343030:intergenic 45.0%
ACCAACTCCCAATGGAACAT+AGG + tig0006145:38084-38103 Msa1343030:intergenic 45.0%
GAAGAATGTCAGTGGGGAAA+GGG + tig0006145:36026-36045 Msa1343030:intergenic 45.0%
TGAAGAATGTCAGTGGGGAA+AGG + tig0006145:36027-36046 Msa1343030:intergenic 45.0%
GCTTCCAAAGAACTTGGCTT+AGG - tig0006145:36194-36213 Msa1343030:CDS 45.0%
GAAGCCTAAGCCAAGTTCTT+TGG + tig0006145:36201-36220 Msa1343030:intergenic 45.0%
TTCCTCAACTCTCATTCCCA+TGG - tig0006145:36375-36394 Msa1343030:CDS 45.0%
TTCCATGGGAATGAGAGTTG+AGG + tig0006145:36380-36399 Msa1343030:intergenic 45.0%
!!! GGGTTGTTACCGTTTTGAGA+AGG + tig0006145:36407-36426 Msa1343030:intergenic 45.0%
TGTTATGGCGAACGATGAGA+TGG - tig0006145:36649-36668 Msa1343030:CDS 45.0%
AGAAGATGCTGCACTATTCG+GGG + tig0006145:36687-36706 Msa1343030:intergenic 45.0%
GATCTATGCATGTACAGTCG+AGG - tig0006145:36716-36735 Msa1343030:intron 45.0%
AGAGAATAGGAGGCTACACA+AGG - tig0006145:37748-37767 Msa1343030:CDS 45.0%
GTTGCAACACGTTCACAAGA+AGG + tig0006145:37851-37870 Msa1343030:intergenic 45.0%
GGCACTAGTATTAGTGACTG+AGG + tig0006145:37891-37910 Msa1343030:intergenic 45.0%
TCCACCTCAAAAACCAGCAT+TGG - tig0006145:37954-37973 Msa1343030:CDS 45.0%
!!! TCCAATGCTGGTTTTTGAGG+TGG + tig0006145:37958-37977 Msa1343030:intergenic 45.0%
CCAACTCCCAATGGAACATA+GGG + tig0006145:38083-38102 Msa1343030:intergenic 45.0%
ACCAACTCCCAATGGAACAT+AGG + tig0006145:38084-38103 Msa1343030:intergenic 45.0%
CCTCGAAGAACCTCCAAACT+CGG + tig0006145:36591-36610 Msa1343030:intergenic 50.0%
CGAGTTTGGAGGTTCTTCGA+GGG - tig0006145:36589-36608 Msa1343030:intron 50.0%
GAGTTTGGAGGTTCTTCGAG+GGG - tig0006145:36590-36609 Msa1343030:intron 50.0%
CTATGCATGTACAGTCGAGG+AGG - tig0006145:36719-36738 Msa1343030:intron 50.0%
ATGTACAGTCGAGGAGGAAG+TGG - tig0006145:36725-36744 Msa1343030:intron 50.0%
AGTGGTGGTAGGAGTTTGAG+TGG - tig0006145:36743-36762 Msa1343030:intron 50.0%
GGTAGGAGTTTGAGTGGTTC+AGG - tig0006145:36749-36768 Msa1343030:intron 50.0%
AGGAGTTTGAGTGGTTCAGG+AGG - tig0006145:36752-36771 Msa1343030:intron 50.0%
GGAGTTTGAGTGGTTCAGGA+GGG - tig0006145:36753-36772 Msa1343030:intron 50.0%
ACCAGACTTCTACTTGGCGA+GGG + tig0006145:37501-37520 Msa1343030:intergenic 50.0%
AACCAGACTTCTACTTGGCG+AGG + tig0006145:37502-37521 Msa1343030:intergenic 50.0%
CCCTATGTTCCATTGGGAGT+TGG - tig0006145:38080-38099 Msa1343030:five_prime_UTR 50.0%
CCTCGAAGAACCTCCAAACT+CGG + tig0006145:36591-36610 Msa1343030:intergenic 50.0%
CGAGTTTGGAGGTTCTTCGA+GGG - tig0006145:36589-36608 Msa1343030:intron 50.0%
GAGTTTGGAGGTTCTTCGAG+GGG - tig0006145:36590-36609 Msa1343030:intron 50.0%
CTATGCATGTACAGTCGAGG+AGG - tig0006145:36719-36738 Msa1343030:intron 50.0%
ATGTACAGTCGAGGAGGAAG+TGG - tig0006145:36725-36744 Msa1343030:intron 50.0%
AGTGGTGGTAGGAGTTTGAG+TGG - tig0006145:36743-36762 Msa1343030:intron 50.0%
GGTAGGAGTTTGAGTGGTTC+AGG - tig0006145:36749-36768 Msa1343030:intron 50.0%
AGGAGTTTGAGTGGTTCAGG+AGG - tig0006145:36752-36771 Msa1343030:intron 50.0%
GGAGTTTGAGTGGTTCAGGA+GGG - tig0006145:36753-36772 Msa1343030:intron 50.0%
ACCAGACTTCTACTTGGCGA+GGG + tig0006145:37501-37520 Msa1343030:intergenic 50.0%
AACCAGACTTCTACTTGGCG+AGG + tig0006145:37502-37521 Msa1343030:intergenic 50.0%
CCCTATGTTCCATTGGGAGT+TGG - tig0006145:38080-38099 Msa1343030:five_prime_UTR 50.0%
CCGAGTTTGGAGGTTCTTCG+AGG - tig0006145:36588-36607 Msa1343030:intron 55.0%
TGGAGGTTCTTCGAGGGGAT+TGG - tig0006145:36595-36614 Msa1343030:CDS 55.0%
GAGGGGATTGGATGTGAACG+TGG - tig0006145:36607-36626 Msa1343030:CDS 55.0%
GGATGTGAACGTGGTTCCAC+CGG - tig0006145:36616-36635 Msa1343030:CDS 55.0%
TACAGTCGAGGAGGAAGTGG+TGG - tig0006145:36728-36747 Msa1343030:intron 55.0%
CCGAGTTTGGAGGTTCTTCG+AGG - tig0006145:36588-36607 Msa1343030:intron 55.0%
TGGAGGTTCTTCGAGGGGAT+TGG - tig0006145:36595-36614 Msa1343030:CDS 55.0%
GAGGGGATTGGATGTGAACG+TGG - tig0006145:36607-36626 Msa1343030:CDS 55.0%
GGATGTGAACGTGGTTCCAC+CGG - tig0006145:36616-36635 Msa1343030:CDS 55.0%
TACAGTCGAGGAGGAAGTGG+TGG - tig0006145:36728-36747 Msa1343030:intron 55.0%
ATAACAACCACCGTCGCCGG+TGG + tig0006145:36635-36654 Msa1343030:intergenic 60.0%
ACCGGCGACGGTGGTTGTTA+TGG - tig0006145:36634-36653 Msa1343030:CDS 60.0%
GCCATAACAACCACCGTCGC+CGG + tig0006145:36638-36657 Msa1343030:intergenic 60.0%
GTCGAGGAGGAAGTGGTGGT+AGG - tig0006145:36732-36751 Msa1343030:intron 60.0%
GCCCTCGCCAAGTAGAAGTC+TGG - tig0006145:37497-37516 Msa1343030:CDS 60.0%
ATAACAACCACCGTCGCCGG+TGG + tig0006145:36635-36654 Msa1343030:intergenic 60.0%
ACCGGCGACGGTGGTTGTTA+TGG - tig0006145:36634-36653 Msa1343030:CDS 60.0%
GCCATAACAACCACCGTCGC+CGG + tig0006145:36638-36657 Msa1343030:intergenic 60.0%
GTCGAGGAGGAAGTGGTGGT+AGG - tig0006145:36732-36751 Msa1343030:intron 60.0%
GCCCTCGCCAAGTAGAAGTC+TGG - tig0006145:37497-37516 Msa1343030:CDS 60.0%
GAACGTGGTTCCACCGGCGA+CGG - tig0006145:36622-36641 Msa1343030:CDS 65.0%
GAACGTGGTTCCACCGGCGA+CGG - tig0006145:36622-36641 Msa1343030:CDS 65.0%
CGTGGTTCCACCGGCGACGG+TGG - tig0006145:36625-36644 Msa1343030:CDS 75.0%
CGTGGTTCCACCGGCGACGG+TGG - tig0006145:36625-36644 Msa1343030:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0006145 gene 36016 38115 36016 ID=Msa1343030;Name=Msa1343030
tig0006145 mRNA 36016 38115 36016 ID=Msa1343030-mRNA-1;Parent=Msa1343030;Name=Msa1343030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=106|1|1|1|1|1|4|166|340
tig0006145 exon 36016 36449 36016 ID=Msa1343030-mRNA-1:exon:3918;Parent=Msa1343030-mRNA-1
tig0006145 exon 36592 36671 36592 ID=Msa1343030-mRNA-1:exon:3917;Parent=Msa1343030-mRNA-1
tig0006145 exon 37179 37558 37179 ID=Msa1343030-mRNA-1:exon:3916;Parent=Msa1343030-mRNA-1
tig0006145 exon 37715 38115 37715 ID=Msa1343030-mRNA-1:exon:3915;Parent=Msa1343030-mRNA-1
tig0006145 five_prime_UTR 38010 38115 38010 ID=Msa1343030-mRNA-1:five_prime_utr;Parent=Msa1343030-mRNA-1
tig0006145 CDS 37715 38009 37715 ID=Msa1343030-mRNA-1:cds;Parent=Msa1343030-mRNA-1
tig0006145 CDS 37179 37558 37179 ID=Msa1343030-mRNA-1:cds;Parent=Msa1343030-mRNA-1
tig0006145 CDS 36592 36671 36592 ID=Msa1343030-mRNA-1:cds;Parent=Msa1343030-mRNA-1
tig0006145 CDS 36182 36449 36182 ID=Msa1343030-mRNA-1:cds;Parent=Msa1343030-mRNA-1
tig0006145 three_prime_UTR 36016 36181 36016 ID=Msa1343030-mRNA-1:three_prime_utr;Parent=Msa1343030-mRNA-1
Gene Sequence

>Msa1343030

ATGGAGCTAGGTTTAAGCTTAGGAGACTCTTCAAAGCCTCTAATTGGATTAATGGAAAAGCATCCTCATCAAGCTTCCAAAGAACTTGGCTTAGGCTTCAACACCACTTTATCAATTGGTCCAATTATTAGTACTACACAAAGAGATCAACTTCAACAACAACAACAAGAAGAAGAAAAGACTCAAAGGGACATCAACAACAACAGTAATAGAACTGAAAATCCTAATCCTGTATTGCATCAACTTGATCTTCTTCCTCAACTCTCATTCCCATGGAATCCTCCTTCTCAAAACGGTAATTTATTATCAACCGAGTTTGGAGGTTCTTCGAGGGGATTGGATGTGAACGTGGTTCCACCGGCGACGGTGGTTGTTATGGCGAACGATGAGATGGCGCTTTCGTCGTCCCCGAATAGTGCAGCATCTTCTTTTCAGATGGATCTATGCATGTACAGTCGAGGAGGAAGTGGTGGTAGGAGTTTGAGTGGTTCAGGAGGGAACAAGAGAGAGTTTTCTGATGGTGAAGGGTATGATCAAAGGAATTCTTCAAGAGTTAGTGATGAAGATGATAACTGTGGTGTTGGTAATGGTAACACAAGGAAGAAACTTAGGCTCTCTAAGGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACATCACACTCTTAACCCTAAACAAAAACTGGCTCTTGCAAAACAACTCAATCTTCGCCCTCGCCAAGTAGAAGTCTGGTTCCAAAATAGAAGAGCAAGGACTAAGTTGAAACAAACAGAAGTAGATTGTGAATACTTAAAGAGATGCTGTGAAACACTAACAGAAGAGAATAGGAGGCTACACAAGGAACTTCAAGAATTAAGAGCTTTAAAAACTTCAAATCCATTCAACATGCAATTACCAGCAACTACTTTAACTATGTGCCCTTCTTGTGAACGTGTTGCAACAAATTCTACAGCCACTTCCTCAGTCACTAATACTAGTGCCACAATCAATGGTAATAACAATAACAACATTAACCAGTGA
Protein sequence

>Msa1343030

MELGLSLGDSSKPLIGLMEKHPHQASKELGLGFNTTLSIGPIISTTQRDQLQQQQQEEEKTQRDINNNSNRTENPNPVLHQLDLLPQLSFPWNPPSQNGNLLSTEFGGSSRGLDVNVVPPATVVVMANDEMALSSSPNSAASSFQMDLCMYSRGGSGGRSLSGSGGNKREFSDGEGYDQRNSSRVSDEDDNCGVGNGNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFNMQLPATTLTMCPSCERVATNSTATSSVTNTSATINGNNNNNINQ*