Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252350 | ACL36992.1 | 99.645 | 282 | 1 | 0 | 1 | 282 | 1 | 282 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252350 | sp|P27054|CHI4_PHAVU | 76.448 | 259 | 56 | 3 | 25 | 282 | 16 | 270 | 7.79e-144 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252350 | B8Y647 | 99.645 | 282 | 1 | 0 | 1 | 282 | 1 | 282 | 0.0 | 586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0252350 | Msa0827240 | 0.809429 | 1.900278e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252350 | MtrunA17_Chr2g0329791 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 578 |
| Msa0252350 | MtrunA17_Chr2g0329781 | 81.496 | 254 | 44 | 2 | 32 | 282 | 10 | 263 | 7.33e-158 | 440 |
| Msa0252350 | MtrunA17_Chr3g0145981 | 35.759 | 316 | 149 | 8 | 9 | 282 | 22 | 325 | 3.46e-59 | 192 |
| Msa0252350 | MtrunA17_Chr8g0370851 | 36.957 | 322 | 151 | 9 | 4 | 282 | 1 | 313 | 6.05e-58 | 188 |
| Msa0252350 | MtrunA17_Chr8g0370821 | 37.584 | 298 | 137 | 9 | 30 | 282 | 31 | 324 | 5.85e-54 | 178 |
| Msa0252350 | MtrunA17_Chr7g0270841 | 39.241 | 237 | 108 | 6 | 81 | 282 | 36 | 271 | 7.50e-54 | 176 |
| Msa0252350 | MtrunA17_Chr8g0370831 | 37.282 | 287 | 140 | 9 | 31 | 282 | 21 | 302 | 2.98e-47 | 160 |
| Msa0252350 | MtrunA17_Chr2g0329771 | 80.000 | 80 | 16 | 0 | 1 | 80 | 1 | 80 | 1.03e-42 | 141 |
| Msa0252350 | MtrunA17_Chr2g0329761 | 81.132 | 53 | 10 | 0 | 229 | 281 | 3 | 55 | 3.63e-24 | 92.4 |
| Msa0252350 | MtrunA17_Chr2g0294721 | 31.120 | 241 | 121 | 8 | 86 | 282 | 62 | 301 | 4.27e-24 | 99.4 |
| Msa0252350 | MtrunA17_Chr1g0206111 | 27.273 | 253 | 131 | 7 | 78 | 282 | 60 | 307 | 1.13e-20 | 89.7 |
| Msa0252350 | MtrunA17_Chr7g0221751 | 25.714 | 315 | 171 | 12 | 14 | 282 | 7 | 304 | 3.62e-19 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252350 | AT3G54420.1 | 65.957 | 282 | 86 | 3 | 1 | 282 | 2 | 273 | 1.66e-136 | 386 |
| Msa0252350 | AT2G43590.1 | 57.255 | 255 | 99 | 3 | 28 | 282 | 20 | 264 | 1.20e-106 | 310 |
| Msa0252350 | AT2G43580.1 | 53.333 | 255 | 110 | 3 | 28 | 282 | 20 | 265 | 2.83e-97 | 286 |
| Msa0252350 | AT2G43570.1 | 50.352 | 284 | 120 | 8 | 6 | 282 | 8 | 277 | 2.18e-89 | 267 |
| Msa0252350 | AT2G43620.1 | 46.043 | 278 | 129 | 8 | 18 | 282 | 14 | 283 | 1.54e-83 | 252 |
| Msa0252350 | AT2G43610.1 | 45.070 | 284 | 137 | 7 | 10 | 282 | 6 | 281 | 3.27e-83 | 251 |
| Msa0252350 | AT3G47540.1 | 46.429 | 224 | 97 | 5 | 60 | 282 | 13 | 214 | 1.60e-62 | 196 |
| Msa0252350 | AT1G56680.1 | 39.427 | 279 | 149 | 11 | 15 | 282 | 11 | 280 | 3.81e-60 | 192 |
| Msa0252350 | AT1G56680.2 | 39.427 | 279 | 149 | 11 | 15 | 282 | 34 | 303 | 8.68e-60 | 192 |
| Msa0252350 | AT3G47540.2 | 45.249 | 221 | 98 | 5 | 60 | 279 | 13 | 211 | 4.55e-58 | 187 |
| Msa0252350 | AT3G12500.1 | 39.286 | 280 | 132 | 6 | 37 | 282 | 45 | 320 | 2.66e-55 | 182 |
| Msa0252350 | AT2G43600.1 | 35.563 | 284 | 160 | 11 | 11 | 282 | 1 | 273 | 6.30e-54 | 176 |
| Msa0252350 | AT2G43600.2 | 35.439 | 285 | 161 | 11 | 10 | 282 | 21 | 294 | 1.60e-53 | 176 |
| Msa0252350 | AT1G02360.1 | 39.496 | 238 | 108 | 5 | 80 | 282 | 29 | 265 | 3.29e-53 | 174 |
| Msa0252350 | AT1G02360.3 | 39.496 | 238 | 108 | 5 | 80 | 282 | 81 | 317 | 7.26e-53 | 175 |
| Msa0252350 | AT1G02360.2 | 39.496 | 238 | 108 | 5 | 80 | 282 | 75 | 311 | 8.55e-53 | 175 |
| Msa0252350 | AT4G01700.1 | 38.912 | 239 | 110 | 5 | 79 | 282 | 36 | 273 | 5.64e-50 | 166 |
| Msa0252350 | AT1G05850.1 | 22.500 | 320 | 175 | 10 | 11 | 282 | 10 | 304 | 1.84e-20 | 89.7 |
| Msa0252350 | AT1G05850.2 | 22.500 | 320 | 175 | 10 | 11 | 282 | 10 | 304 | 1.84e-20 | 89.7 |
| Msa0252350 | AT3G16920.2 | 27.530 | 247 | 133 | 9 | 81 | 282 | 92 | 337 | 2.05e-19 | 87.0 |
| Msa0252350 | AT3G16920.1 | 27.530 | 247 | 133 | 9 | 81 | 282 | 68 | 313 | 2.17e-19 | 87.0 |
Find 83 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCATTGGCCACTGTTTC+AGG | 0.200039 | 2_2:-43341367 | None:intergenic |
| TACTATCTTAACAAAGAAAA+TGG | 0.262883 | 2_2:+43341740 | Msa0252350:three_prime_UTR |
| TTAAGCGATGCAGTGGTAAA+AGG | 0.283627 | 2_2:-43341705 | None:intergenic |
| CGACCGTAGTAACCTTTGTT+AGG | 0.286313 | 2_2:-43341268 | None:intergenic |
| CTATCTTGGAACTACAACTA+TGG | 0.300245 | 2_2:+43341304 | Msa0252350:CDS |
| TCATCACAGTAGTCCTTTGA+TGG | 0.329355 | 2_2:-43341220 | None:intergenic |
| GGGAATTGAATTGTTGAATT+CGG | 0.337620 | 2_2:-43341682 | None:intergenic |
| AAGGCTTTGGTGCAACCATT+AGG | 0.341342 | 2_2:+43341452 | Msa0252350:CDS |
| GTTTGGTAGGTCTGGTACTT+TGG | 0.346077 | 2_2:+43340897 | Msa0252350:CDS |
| TCAAGACAGCATTATGGTAT+TGG | 0.355700 | 2_2:+43341401 | Msa0252350:CDS |
| TGCTATACTGAAGAGATTGA+TGG | 0.361166 | 2_2:+43341196 | Msa0252350:CDS |
| CTTAATTCTTATAATCAGTT+TGG | 0.363072 | 2_2:+43340880 | Msa0252350:CDS |
| GCTCATTTCACACATGAAAC+TGG | 0.365058 | 2_2:+43340952 | Msa0252350:CDS |
| TATAATCAGTTTGGTAGGTC+TGG | 0.371597 | 2_2:+43340889 | Msa0252350:CDS |
| GCAACCATTAGGGCTATTAA+TGG | 0.385855 | 2_2:+43341463 | Msa0252350:CDS |
| TGTCCTTCAAGACAGCATTA+TGG | 0.387076 | 2_2:+43341395 | Msa0252350:CDS |
| ATACCATAATGCTGTCTTGA+AGG | 0.394568 | 2_2:-43341398 | None:intergenic |
| AGCAGCAGCAACCTCACGTT+TGG | 0.394614 | 2_2:-43340926 | None:intergenic |
| AGGCTTTGGTGCAACCATTA+GGG | 0.395270 | 2_2:+43341453 | Msa0252350:CDS |
| TGGGCAAACTTGGTGGTGTT+TGG | 0.397495 | 2_2:-43340738 | None:intergenic |
| ATACTATAAAATCTATTGTA+TGG | 0.407127 | 2_2:-43341607 | None:intergenic |
| GCATCATTGTTGGGCAAACT+TGG | 0.411576 | 2_2:-43340748 | None:intergenic |
| GACCGTAGTAACCTTTGTTA+GGG | 0.424083 | 2_2:-43341267 | None:intergenic |
| GAAGGACACAACAGCATCAT+TGG | 0.428454 | 2_2:-43341380 | None:intergenic |
| GGTGTCATCAACCAAGGCTT+TGG | 0.430868 | 2_2:+43341439 | Msa0252350:CDS |
| ACACGAGTCTGAACTGTGCT+TGG | 0.436375 | 2_2:-43341511 | None:intergenic |
| TCGACCATTAATAGCCCTAA+TGG | 0.441150 | 2_2:-43341467 | None:intergenic |
| GCCACATTAGCATCATTGTT+GGG | 0.442299 | 2_2:-43340757 | None:intergenic |
| GATTGCTAGCTTAGCAAGTA+AGG | 0.445030 | 2_2:-43341585 | None:intergenic |
| CTCTCATAATATGACTATGA+TGG | 0.446283 | 2_2:+43340525 | Msa0252350:exon |
| ACCAACGTTTGTTATTATCA+AGG | 0.448613 | 2_2:-43341767 | None:intergenic |
| GTGGACCGATTCAACTATCT+TGG | 0.452579 | 2_2:+43341290 | Msa0252350:CDS |
| AGTGAGTTGGGTGTTGCTCC+TGG | 0.457642 | 2_2:+43341556 | Msa0252350:CDS |
| CAAATCACTAAGCATATGTA+TGG | 0.459351 | 2_2:+43340552 | Msa0252350:CDS |
| CAAGCTGATTCTAGCTGTGC+AGG | 0.462495 | 2_2:+43340820 | Msa0252350:CDS |
| CACTCAATATTGTAGTGAGT+TGG | 0.467919 | 2_2:+43341543 | Msa0252350:CDS |
| AGCCACATTAGCATCATTGT+TGG | 0.473861 | 2_2:-43340758 | None:intergenic |
| TAAGCGATGCAGTGGTAAAA+GGG | 0.475725 | 2_2:-43341704 | None:intergenic |
| GGAGTGTGTTGCAGCCAATA+CGG | 0.476582 | 2_2:+43340652 | Msa0252350:CDS |
| TATTGAAGAAATCTTGTGTA+AGG | 0.478357 | 2_2:-43340786 | None:intergenic |
| CATTACCACAATACCCGTAT+TGG | 0.482956 | 2_2:-43340666 | None:intergenic |
| ACTCAATATTGTAGTGAGTT+GGG | 0.486051 | 2_2:+43341544 | Msa0252350:CDS |
| CAATACGGGTATTGTGGTAA+TGG | 0.497456 | 2_2:+43340667 | Msa0252350:CDS |
| TAGTTCCAAGATAGTTGAAT+CGG | 0.500260 | 2_2:-43341295 | None:intergenic |
| TAATGGTTGCACCAAAGCCT+TGG | 0.502879 | 2_2:-43341450 | None:intergenic |
| AACTACAACTATGGACCAGC+TGG | 0.503629 | 2_2:+43341313 | Msa0252350:CDS |
| CACGAGTCTGAACTGTGCTT+GGG | 0.508045 | 2_2:-43341510 | None:intergenic |
| AAACAAGGTCCTTGTTATGC+TGG | 0.509150 | 2_2:+43340715 | Msa0252350:CDS |
| TCTCATAATATGACTATGAT+GGG | 0.511506 | 2_2:+43340526 | Msa0252350:exon |
| ATTCTTATAATCAGTTTGGT+AGG | 0.512286 | 2_2:+43340884 | Msa0252350:CDS |
| GAGTGTGTTGCAGCCAATAC+GGG | 0.522073 | 2_2:+43340653 | Msa0252350:CDS |
| AAACCATTGTCTCTTCCAGC+TGG | 0.544197 | 2_2:-43341328 | None:intergenic |
| ATGTTAGTGCTCAAAATTGT+GGG | 0.550523 | 2_2:+43340620 | Msa0252350:CDS |
| AACAAAGGTTACTACGGTCG+TGG | 0.552838 | 2_2:+43341271 | Msa0252350:CDS |
| TAACCTTTGTTAGGGGCACA+TGG | 0.560210 | 2_2:-43341259 | None:intergenic |
| TAAGATATTTAATCAGCTGG+TGG | 0.563730 | 2_2:-43340483 | None:intergenic |
| TGCAGCCAATACGGGTATTG+TGG | 0.572631 | 2_2:+43340661 | Msa0252350:CDS |
| GGTGATGCATATTGTGGCAC+AGG | 0.573444 | 2_2:+43340688 | Msa0252350:CDS |
| CAAAATTGTGGGTGTGCTGA+AGG | 0.577261 | 2_2:+43340631 | Msa0252350:CDS |
| AATGTTAGTGCTCAAAATTG+TGG | 0.577445 | 2_2:+43340619 | Msa0252350:CDS |
| AGCACAGTTCAGACTCGTGT+TGG | 0.581556 | 2_2:+43341514 | Msa0252350:CDS |
| AGAGATTGATGGTCCATCAA+AGG | 0.593380 | 2_2:+43341207 | Msa0252350:CDS |
| TGTGGCACAGGATGCAAACA+AGG | 0.594512 | 2_2:+43340700 | Msa0252350:CDS |
| ATTGAACTCTCCTGAAACAG+TGG | 0.597631 | 2_2:+43341357 | Msa0252350:CDS |
| GGTGTTTGGCCAGCATAACA+AGG | 0.601838 | 2_2:-43340724 | None:intergenic |
| TCATTGTTGGGCAAACTTGG+TGG | 0.602286 | 2_2:-43340745 | None:intergenic |
| CATCATAGTCATATTATGAG+AGG | 0.610197 | 2_2:-43340524 | None:intergenic |
| GCCCCTAACAAAGGTTACTA+CGG | 0.616806 | 2_2:+43341265 | Msa0252350:CDS |
| TGGCCATGTGCCCCTAACAA+AGG | 0.618946 | 2_2:+43341256 | Msa0252350:CDS |
| GGACCAGCTGGAAGAGACAA+TGG | 0.624670 | 2_2:+43341325 | Msa0252350:CDS |
| AATCGAATTAAGCGATGCAG+TGG | 0.625616 | 2_2:-43341712 | None:intergenic |
| TAGCAAGTAAGGTTATCACC+AGG | 0.638426 | 2_2:-43341574 | None:intergenic |
| GCCCAACAATGATGCTAATG+TGG | 0.645161 | 2_2:+43340756 | Msa0252350:CDS |
| ACCTTGATAATAACAAACGT+TGG | 0.649155 | 2_2:+43341766 | Msa0252350:three_prime_UTR |
| GGTAATGGTGATGCATATTG+TGG | 0.652622 | 2_2:+43340682 | Msa0252350:CDS |
| AAGCGATGCAGTGGTAAAAG+GGG | 0.653574 | 2_2:-43341703 | None:intergenic |
| AATGGTCGACTTGAATGTGA+TGG | 0.664152 | 2_2:+43341481 | Msa0252350:CDS |
| ACCGTAGTAACCTTTGTTAG+GGG | 0.669486 | 2_2:-43341266 | None:intergenic |
| GTGCATGGTGTCATCAACCA+AGG | 0.671462 | 2_2:+43341433 | Msa0252350:CDS |
| TTTGGATGACTCCAAACGTG+AGG | 0.672962 | 2_2:+43340915 | Msa0252350:CDS |
| TATTGGATGAATAATGTGCA+TGG | 0.688908 | 2_2:+43341418 | Msa0252350:CDS |
| AGCGATGCAGTGGTAAAAGG+GGG | 0.698322 | 2_2:-43341702 | None:intergenic |
| GTGATGAAAACAACACAGAG+TGG | 0.752581 | 2_2:+43341236 | Msa0252350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAATTTGTTATCAAATT+TGG | + | chr2_2:43341061-43341080 | Msa0252350:intron | 10.0% |
| !!! | TATTAATTTGTTATCAAATT+TGG | + | chr2_2:43341061-43341080 | Msa0252350:intron | 10.0% |
| !! | ATACTATAAAATCTATTGTA+TGG | - | chr2_2:43341610-43341629 | None:intergenic | 15.0% |
| !! | ATACTATAAAATCTATTGTA+TGG | - | chr2_2:43341610-43341629 | None:intergenic | 15.0% |
| !!! | TTTTAAGATATTTAATCAGC+TGG | - | chr2_2:43340489-43340508 | None:intergenic | 20.0% |
| !! | CTTAATTCTTATAATCAGTT+TGG | + | chr2_2:43340880-43340899 | Msa0252350:CDS | 20.0% |
| !! | TCATAATTTATCGTTGTATT+CGG | + | chr2_2:43340991-43341010 | Msa0252350:intron | 20.0% |
| !!! | CATTAATTTTGTTTAGTTGA+TGG | - | chr2_2:43341020-43341039 | None:intergenic | 20.0% |
| !!! | AAATTTGGTAACACAATTAT+TGG | + | chr2_2:43341076-43341095 | Msa0252350:intron | 20.0% |
| !!! | AATTTGGTAACACAATTATT+GGG | + | chr2_2:43341077-43341096 | Msa0252350:intron | 20.0% |
| !! | TACTATCTTAACAAAGAAAA+TGG | + | chr2_2:43341740-43341759 | Msa0252350:three_prime_UTR | 20.0% |
| !!! | TTTTAAGATATTTAATCAGC+TGG | - | chr2_2:43340489-43340508 | None:intergenic | 20.0% |
| !! | CTTAATTCTTATAATCAGTT+TGG | + | chr2_2:43340880-43340899 | Msa0252350:CDS | 20.0% |
| !! | TCATAATTTATCGTTGTATT+CGG | + | chr2_2:43340991-43341010 | Msa0252350:intron | 20.0% |
| !!! | CATTAATTTTGTTTAGTTGA+TGG | - | chr2_2:43341020-43341039 | None:intergenic | 20.0% |
| !!! | AAATTTGGTAACACAATTAT+TGG | + | chr2_2:43341076-43341095 | Msa0252350:intron | 20.0% |
| !!! | AATTTGGTAACACAATTATT+GGG | + | chr2_2:43341077-43341096 | Msa0252350:intron | 20.0% |
| !! | TACTATCTTAACAAAGAAAA+TGG | + | chr2_2:43341740-43341759 | Msa0252350:three_prime_UTR | 20.0% |
| ! | TCTCATAATATGACTATGAT+GGG | + | chr2_2:43340526-43340545 | Msa0252350:exon | 25.0% |
| ! | GATCATAATGAAAAATGCTA+TGG | - | chr2_2:43340587-43340606 | None:intergenic | 25.0% |
| !! | AGCATTTTTCATTATGATCA+TGG | + | chr2_2:43340588-43340607 | Msa0252350:CDS | 25.0% |
| !! | TTTTGAGCACTAACATTTTT+TGG | - | chr2_2:43340616-43340635 | None:intergenic | 25.0% |
| ! | TATTGAAGAAATCTTGTGTA+AGG | - | chr2_2:43340789-43340808 | None:intergenic | 25.0% |
| ! | ATTCTTATAATCAGTTTGGT+AGG | + | chr2_2:43340884-43340903 | Msa0252350:CDS | 25.0% |
| !! | TCTCATATTCTCTTTTTACT+AGG | + | chr2_2:43341122-43341141 | Msa0252350:intron | 25.0% |
| !! | CTCATATTCTCTTTTTACTA+GGG | + | chr2_2:43341123-43341142 | Msa0252350:intron | 25.0% |
| ! | TCTCATAATATGACTATGAT+GGG | + | chr2_2:43340526-43340545 | Msa0252350:exon | 25.0% |
| ! | GATCATAATGAAAAATGCTA+TGG | - | chr2_2:43340587-43340606 | None:intergenic | 25.0% |
| !! | AGCATTTTTCATTATGATCA+TGG | + | chr2_2:43340588-43340607 | Msa0252350:CDS | 25.0% |
| !! | TTTTGAGCACTAACATTTTT+TGG | - | chr2_2:43340616-43340635 | None:intergenic | 25.0% |
| ! | TATTGAAGAAATCTTGTGTA+AGG | - | chr2_2:43340789-43340808 | None:intergenic | 25.0% |
| ! | ATTCTTATAATCAGTTTGGT+AGG | + | chr2_2:43340884-43340903 | Msa0252350:CDS | 25.0% |
| !! | TCTCATATTCTCTTTTTACT+AGG | + | chr2_2:43341122-43341141 | Msa0252350:intron | 25.0% |
| !! | CTCATATTCTCTTTTTACTA+GGG | + | chr2_2:43341123-43341142 | Msa0252350:intron | 25.0% |
| CATCATAGTCATATTATGAG+AGG | - | chr2_2:43340527-43340546 | None:intergenic | 30.0% | |
| CTCTCATAATATGACTATGA+TGG | + | chr2_2:43340525-43340544 | Msa0252350:exon | 30.0% | |
| CAAATCACTAAGCATATGTA+TGG | + | chr2_2:43340552-43340571 | Msa0252350:CDS | 30.0% | |
| AATGTTAGTGCTCAAAATTG+TGG | + | chr2_2:43340619-43340638 | Msa0252350:CDS | 30.0% | |
| ATGTTAGTGCTCAAAATTGT+GGG | + | chr2_2:43340620-43340639 | Msa0252350:CDS | 30.0% | |
| TAGTTCCAAGATAGTTGAAT+CGG | - | chr2_2:43341298-43341317 | None:intergenic | 30.0% | |
| TATTGGATGAATAATGTGCA+TGG | + | chr2_2:43341418-43341437 | Msa0252350:CDS | 30.0% | |
| ACTCAATATTGTAGTGAGTT+GGG | + | chr2_2:43341544-43341563 | Msa0252350:CDS | 30.0% | |
| GGGAATTGAATTGTTGAATT+CGG | - | chr2_2:43341685-43341704 | None:intergenic | 30.0% | |
| ! | ACCTTGATAATAACAAACGT+TGG | + | chr2_2:43341766-43341785 | Msa0252350:three_prime_UTR | 30.0% |
| !! | ACCAACGTTTGTTATTATCA+AGG | - | chr2_2:43341770-43341789 | None:intergenic | 30.0% |
| CATCATAGTCATATTATGAG+AGG | - | chr2_2:43340527-43340546 | None:intergenic | 30.0% | |
| CTCTCATAATATGACTATGA+TGG | + | chr2_2:43340525-43340544 | Msa0252350:exon | 30.0% | |
| CAAATCACTAAGCATATGTA+TGG | + | chr2_2:43340552-43340571 | Msa0252350:CDS | 30.0% | |
| AATGTTAGTGCTCAAAATTG+TGG | + | chr2_2:43340619-43340638 | Msa0252350:CDS | 30.0% | |
| ATGTTAGTGCTCAAAATTGT+GGG | + | chr2_2:43340620-43340639 | Msa0252350:CDS | 30.0% | |
| TAGTTCCAAGATAGTTGAAT+CGG | - | chr2_2:43341298-43341317 | None:intergenic | 30.0% | |
| TATTGGATGAATAATGTGCA+TGG | + | chr2_2:43341418-43341437 | Msa0252350:CDS | 30.0% | |
| ACTCAATATTGTAGTGAGTT+GGG | + | chr2_2:43341544-43341563 | Msa0252350:CDS | 30.0% | |
| GGGAATTGAATTGTTGAATT+CGG | - | chr2_2:43341685-43341704 | None:intergenic | 30.0% | |
| ! | ACCTTGATAATAACAAACGT+TGG | + | chr2_2:43341766-43341785 | Msa0252350:three_prime_UTR | 30.0% |
| !! | ACCAACGTTTGTTATTATCA+AGG | - | chr2_2:43341770-43341789 | None:intergenic | 30.0% |
| TATAATCAGTTTGGTAGGTC+TGG | + | chr2_2:43340889-43340908 | Msa0252350:CDS | 35.0% | |
| TGCTATACTGAAGAGATTGA+TGG | + | chr2_2:43341196-43341215 | Msa0252350:CDS | 35.0% | |
| CTATCTTGGAACTACAACTA+TGG | + | chr2_2:43341304-43341323 | Msa0252350:CDS | 35.0% | |
| ATACCATAATGCTGTCTTGA+AGG | - | chr2_2:43341401-43341420 | None:intergenic | 35.0% | |
| TCAAGACAGCATTATGGTAT+TGG | + | chr2_2:43341401-43341420 | Msa0252350:CDS | 35.0% | |
| CACTCAATATTGTAGTGAGT+TGG | + | chr2_2:43341543-43341562 | Msa0252350:CDS | 35.0% | |
| TATAATCAGTTTGGTAGGTC+TGG | + | chr2_2:43340889-43340908 | Msa0252350:CDS | 35.0% | |
| TGCTATACTGAAGAGATTGA+TGG | + | chr2_2:43341196-43341215 | Msa0252350:CDS | 35.0% | |
| CTATCTTGGAACTACAACTA+TGG | + | chr2_2:43341304-43341323 | Msa0252350:CDS | 35.0% | |
| ATACCATAATGCTGTCTTGA+AGG | - | chr2_2:43341401-43341420 | None:intergenic | 35.0% | |
| TCAAGACAGCATTATGGTAT+TGG | + | chr2_2:43341401-43341420 | Msa0252350:CDS | 35.0% | |
| CACTCAATATTGTAGTGAGT+TGG | + | chr2_2:43341543-43341562 | Msa0252350:CDS | 35.0% | |
| CATTACCACAATACCCGTAT+TGG | - | chr2_2:43340669-43340688 | None:intergenic | 40.0% | |
| ! | CAATACGGGTATTGTGGTAA+TGG | + | chr2_2:43340667-43340686 | Msa0252350:CDS | 40.0% |
| ! | GGTAATGGTGATGCATATTG+TGG | + | chr2_2:43340682-43340701 | Msa0252350:CDS | 40.0% |
| ! | AAACAAGGTCCTTGTTATGC+TGG | + | chr2_2:43340715-43340734 | Msa0252350:CDS | 40.0% |
| GCCACATTAGCATCATTGTT+GGG | - | chr2_2:43340760-43340779 | None:intergenic | 40.0% | |
| AGCCACATTAGCATCATTGT+TGG | - | chr2_2:43340761-43340780 | None:intergenic | 40.0% | |
| GCTCATTTCACACATGAAAC+TGG | + | chr2_2:43340952-43340971 | Msa0252350:CDS | 40.0% | |
| ! | AGAGATTGATGGTCCATCAA+AGG | + | chr2_2:43341207-43341226 | Msa0252350:CDS | 40.0% |
| TCATCACAGTAGTCCTTTGA+TGG | - | chr2_2:43341223-43341242 | None:intergenic | 40.0% | |
| GTGATGAAAACAACACAGAG+TGG | + | chr2_2:43341236-43341255 | Msa0252350:CDS | 40.0% | |
| ACCGTAGTAACCTTTGTTAG+GGG | - | chr2_2:43341269-43341288 | None:intergenic | 40.0% | |
| GACCGTAGTAACCTTTGTTA+GGG | - | chr2_2:43341270-43341289 | None:intergenic | 40.0% | |
| !!! | GGAAGAGACAATGGTTTTGA+TGG | + | chr2_2:43341334-43341353 | Msa0252350:CDS | 40.0% |
| ATTGAACTCTCCTGAAACAG+TGG | + | chr2_2:43341357-43341376 | Msa0252350:CDS | 40.0% | |
| TGTCCTTCAAGACAGCATTA+TGG | + | chr2_2:43341395-43341414 | Msa0252350:CDS | 40.0% | |
| GCAACCATTAGGGCTATTAA+TGG | + | chr2_2:43341463-43341482 | Msa0252350:CDS | 40.0% | |
| TCGACCATTAATAGCCCTAA+TGG | - | chr2_2:43341470-43341489 | None:intergenic | 40.0% | |
| !! | AATGGTCGACTTGAATGTGA+TGG | + | chr2_2:43341481-43341500 | Msa0252350:CDS | 40.0% |
| TAGCAAGTAAGGTTATCACC+AGG | - | chr2_2:43341577-43341596 | None:intergenic | 40.0% | |
| ! | GATTGCTAGCTTAGCAAGTA+AGG | - | chr2_2:43341588-43341607 | None:intergenic | 40.0% |
| TAAGCGATGCAGTGGTAAAA+GGG | - | chr2_2:43341707-43341726 | None:intergenic | 40.0% | |
| TTAAGCGATGCAGTGGTAAA+AGG | - | chr2_2:43341708-43341727 | None:intergenic | 40.0% | |
| AATCGAATTAAGCGATGCAG+TGG | - | chr2_2:43341715-43341734 | None:intergenic | 40.0% | |
| CATTACCACAATACCCGTAT+TGG | - | chr2_2:43340669-43340688 | None:intergenic | 40.0% | |
| ! | CAATACGGGTATTGTGGTAA+TGG | + | chr2_2:43340667-43340686 | Msa0252350:CDS | 40.0% |
| ! | GGTAATGGTGATGCATATTG+TGG | + | chr2_2:43340682-43340701 | Msa0252350:CDS | 40.0% |
| ! | AAACAAGGTCCTTGTTATGC+TGG | + | chr2_2:43340715-43340734 | Msa0252350:CDS | 40.0% |
| GCCACATTAGCATCATTGTT+GGG | - | chr2_2:43340760-43340779 | None:intergenic | 40.0% | |
| AGCCACATTAGCATCATTGT+TGG | - | chr2_2:43340761-43340780 | None:intergenic | 40.0% | |
| GCTCATTTCACACATGAAAC+TGG | + | chr2_2:43340952-43340971 | Msa0252350:CDS | 40.0% | |
| ! | AGAGATTGATGGTCCATCAA+AGG | + | chr2_2:43341207-43341226 | Msa0252350:CDS | 40.0% |
| TCATCACAGTAGTCCTTTGA+TGG | - | chr2_2:43341223-43341242 | None:intergenic | 40.0% | |
| GTGATGAAAACAACACAGAG+TGG | + | chr2_2:43341236-43341255 | Msa0252350:CDS | 40.0% | |
| ACCGTAGTAACCTTTGTTAG+GGG | - | chr2_2:43341269-43341288 | None:intergenic | 40.0% | |
| GACCGTAGTAACCTTTGTTA+GGG | - | chr2_2:43341270-43341289 | None:intergenic | 40.0% | |
| !!! | GGAAGAGACAATGGTTTTGA+TGG | + | chr2_2:43341334-43341353 | Msa0252350:CDS | 40.0% |
| ATTGAACTCTCCTGAAACAG+TGG | + | chr2_2:43341357-43341376 | Msa0252350:CDS | 40.0% | |
| TGTCCTTCAAGACAGCATTA+TGG | + | chr2_2:43341395-43341414 | Msa0252350:CDS | 40.0% | |
| GCAACCATTAGGGCTATTAA+TGG | + | chr2_2:43341463-43341482 | Msa0252350:CDS | 40.0% | |
| TCGACCATTAATAGCCCTAA+TGG | - | chr2_2:43341470-43341489 | None:intergenic | 40.0% | |
| !! | AATGGTCGACTTGAATGTGA+TGG | + | chr2_2:43341481-43341500 | Msa0252350:CDS | 40.0% |
| TAGCAAGTAAGGTTATCACC+AGG | - | chr2_2:43341577-43341596 | None:intergenic | 40.0% | |
| ! | GATTGCTAGCTTAGCAAGTA+AGG | - | chr2_2:43341588-43341607 | None:intergenic | 40.0% |
| TAAGCGATGCAGTGGTAAAA+GGG | - | chr2_2:43341707-43341726 | None:intergenic | 40.0% | |
| TTAAGCGATGCAGTGGTAAA+AGG | - | chr2_2:43341708-43341727 | None:intergenic | 40.0% | |
| AATCGAATTAAGCGATGCAG+TGG | - | chr2_2:43341715-43341734 | None:intergenic | 40.0% | |
| CAAAATTGTGGGTGTGCTGA+AGG | + | chr2_2:43340631-43340650 | Msa0252350:CDS | 45.0% | |
| TCATTGTTGGGCAAACTTGG+TGG | - | chr2_2:43340748-43340767 | None:intergenic | 45.0% | |
| GCATCATTGTTGGGCAAACT+TGG | - | chr2_2:43340751-43340770 | None:intergenic | 45.0% | |
| GCCCAACAATGATGCTAATG+TGG | + | chr2_2:43340756-43340775 | Msa0252350:CDS | 45.0% | |
| GTTTGGTAGGTCTGGTACTT+TGG | + | chr2_2:43340897-43340916 | Msa0252350:CDS | 45.0% | |
| TTTGGATGACTCCAAACGTG+AGG | + | chr2_2:43340915-43340934 | Msa0252350:CDS | 45.0% | |
| ! | TAACCTTTGTTAGGGGCACA+TGG | - | chr2_2:43341262-43341281 | None:intergenic | 45.0% |
| GCCCCTAACAAAGGTTACTA+CGG | + | chr2_2:43341265-43341284 | Msa0252350:CDS | 45.0% | |
| CGACCGTAGTAACCTTTGTT+AGG | - | chr2_2:43341271-43341290 | None:intergenic | 45.0% | |
| AACAAAGGTTACTACGGTCG+TGG | + | chr2_2:43341271-43341290 | Msa0252350:CDS | 45.0% | |
| ! | GTGGACCGATTCAACTATCT+TGG | + | chr2_2:43341290-43341309 | Msa0252350:CDS | 45.0% |
| AACTACAACTATGGACCAGC+TGG | + | chr2_2:43341313-43341332 | Msa0252350:CDS | 45.0% | |
| AAACCATTGTCTCTTCCAGC+TGG | - | chr2_2:43341331-43341350 | None:intergenic | 45.0% | |
| GAAGGACACAACAGCATCAT+TGG | - | chr2_2:43341383-43341402 | None:intergenic | 45.0% | |
| TAATGGTTGCACCAAAGCCT+TGG | - | chr2_2:43341453-43341472 | None:intergenic | 45.0% | |
| ! | AAGGCTTTGGTGCAACCATT+AGG | + | chr2_2:43341452-43341471 | Msa0252350:CDS | 45.0% |
| ! | AGGCTTTGGTGCAACCATTA+GGG | + | chr2_2:43341453-43341472 | Msa0252350:CDS | 45.0% |
| AAGCGATGCAGTGGTAAAAG+GGG | - | chr2_2:43341706-43341725 | None:intergenic | 45.0% | |
| CAAAATTGTGGGTGTGCTGA+AGG | + | chr2_2:43340631-43340650 | Msa0252350:CDS | 45.0% | |
| TCATTGTTGGGCAAACTTGG+TGG | - | chr2_2:43340748-43340767 | None:intergenic | 45.0% | |
| GCATCATTGTTGGGCAAACT+TGG | - | chr2_2:43340751-43340770 | None:intergenic | 45.0% | |
| GCCCAACAATGATGCTAATG+TGG | + | chr2_2:43340756-43340775 | Msa0252350:CDS | 45.0% | |
| GTTTGGTAGGTCTGGTACTT+TGG | + | chr2_2:43340897-43340916 | Msa0252350:CDS | 45.0% | |
| TTTGGATGACTCCAAACGTG+AGG | + | chr2_2:43340915-43340934 | Msa0252350:CDS | 45.0% | |
| ! | TAACCTTTGTTAGGGGCACA+TGG | - | chr2_2:43341262-43341281 | None:intergenic | 45.0% |
| GCCCCTAACAAAGGTTACTA+CGG | + | chr2_2:43341265-43341284 | Msa0252350:CDS | 45.0% | |
| CGACCGTAGTAACCTTTGTT+AGG | - | chr2_2:43341271-43341290 | None:intergenic | 45.0% | |
| AACAAAGGTTACTACGGTCG+TGG | + | chr2_2:43341271-43341290 | Msa0252350:CDS | 45.0% | |
| ! | GTGGACCGATTCAACTATCT+TGG | + | chr2_2:43341290-43341309 | Msa0252350:CDS | 45.0% |
| AACTACAACTATGGACCAGC+TGG | + | chr2_2:43341313-43341332 | Msa0252350:CDS | 45.0% | |
| AAACCATTGTCTCTTCCAGC+TGG | - | chr2_2:43341331-43341350 | None:intergenic | 45.0% | |
| GAAGGACACAACAGCATCAT+TGG | - | chr2_2:43341383-43341402 | None:intergenic | 45.0% | |
| TAATGGTTGCACCAAAGCCT+TGG | - | chr2_2:43341453-43341472 | None:intergenic | 45.0% | |
| ! | AAGGCTTTGGTGCAACCATT+AGG | + | chr2_2:43341452-43341471 | Msa0252350:CDS | 45.0% |
| ! | AGGCTTTGGTGCAACCATTA+GGG | + | chr2_2:43341453-43341472 | Msa0252350:CDS | 45.0% |
| AAGCGATGCAGTGGTAAAAG+GGG | - | chr2_2:43341706-43341725 | None:intergenic | 45.0% | |
| GGAGTGTGTTGCAGCCAATA+CGG | + | chr2_2:43340652-43340671 | Msa0252350:CDS | 50.0% | |
| GAGTGTGTTGCAGCCAATAC+GGG | + | chr2_2:43340653-43340672 | Msa0252350:CDS | 50.0% | |
| ! | TGCAGCCAATACGGGTATTG+TGG | + | chr2_2:43340661-43340680 | Msa0252350:CDS | 50.0% |
| GGTGATGCATATTGTGGCAC+AGG | + | chr2_2:43340688-43340707 | Msa0252350:CDS | 50.0% | |
| TGTGGCACAGGATGCAAACA+AGG | + | chr2_2:43340700-43340719 | Msa0252350:CDS | 50.0% | |
| GGTGTTTGGCCAGCATAACA+AGG | - | chr2_2:43340727-43340746 | None:intergenic | 50.0% | |
| !! | TGGGCAAACTTGGTGGTGTT+TGG | - | chr2_2:43340741-43340760 | None:intergenic | 50.0% |
| ! | CAAGCTGATTCTAGCTGTGC+AGG | + | chr2_2:43340820-43340839 | Msa0252350:CDS | 50.0% |
| GCATCATTGGCCACTGTTTC+AGG | - | chr2_2:43341370-43341389 | None:intergenic | 50.0% | |
| !! | GTGCATGGTGTCATCAACCA+AGG | + | chr2_2:43341433-43341452 | Msa0252350:CDS | 50.0% |
| ! | GGTGTCATCAACCAAGGCTT+TGG | + | chr2_2:43341439-43341458 | Msa0252350:CDS | 50.0% |
| CACGAGTCTGAACTGTGCTT+GGG | - | chr2_2:43341513-43341532 | None:intergenic | 50.0% | |
| ACACGAGTCTGAACTGTGCT+TGG | - | chr2_2:43341514-43341533 | None:intergenic | 50.0% | |
| AGCACAGTTCAGACTCGTGT+TGG | + | chr2_2:43341514-43341533 | Msa0252350:CDS | 50.0% | |
| AGCGATGCAGTGGTAAAAGG+GGG | - | chr2_2:43341705-43341724 | None:intergenic | 50.0% | |
| GGAGTGTGTTGCAGCCAATA+CGG | + | chr2_2:43340652-43340671 | Msa0252350:CDS | 50.0% | |
| GAGTGTGTTGCAGCCAATAC+GGG | + | chr2_2:43340653-43340672 | Msa0252350:CDS | 50.0% | |
| ! | TGCAGCCAATACGGGTATTG+TGG | + | chr2_2:43340661-43340680 | Msa0252350:CDS | 50.0% |
| GGTGATGCATATTGTGGCAC+AGG | + | chr2_2:43340688-43340707 | Msa0252350:CDS | 50.0% | |
| TGTGGCACAGGATGCAAACA+AGG | + | chr2_2:43340700-43340719 | Msa0252350:CDS | 50.0% | |
| GGTGTTTGGCCAGCATAACA+AGG | - | chr2_2:43340727-43340746 | None:intergenic | 50.0% | |
| !! | TGGGCAAACTTGGTGGTGTT+TGG | - | chr2_2:43340741-43340760 | None:intergenic | 50.0% |
| ! | CAAGCTGATTCTAGCTGTGC+AGG | + | chr2_2:43340820-43340839 | Msa0252350:CDS | 50.0% |
| GCATCATTGGCCACTGTTTC+AGG | - | chr2_2:43341370-43341389 | None:intergenic | 50.0% | |
| !! | GTGCATGGTGTCATCAACCA+AGG | + | chr2_2:43341433-43341452 | Msa0252350:CDS | 50.0% |
| ! | GGTGTCATCAACCAAGGCTT+TGG | + | chr2_2:43341439-43341458 | Msa0252350:CDS | 50.0% |
| CACGAGTCTGAACTGTGCTT+GGG | - | chr2_2:43341513-43341532 | None:intergenic | 50.0% | |
| ACACGAGTCTGAACTGTGCT+TGG | - | chr2_2:43341514-43341533 | None:intergenic | 50.0% | |
| AGCACAGTTCAGACTCGTGT+TGG | + | chr2_2:43341514-43341533 | Msa0252350:CDS | 50.0% | |
| AGCGATGCAGTGGTAAAAGG+GGG | - | chr2_2:43341705-43341724 | None:intergenic | 50.0% | |
| AGCAGCAGCAACCTCACGTT+TGG | - | chr2_2:43340929-43340948 | None:intergenic | 55.0% | |
| TGGCCATGTGCCCCTAACAA+AGG | + | chr2_2:43341256-43341275 | Msa0252350:CDS | 55.0% | |
| GGACCAGCTGGAAGAGACAA+TGG | + | chr2_2:43341325-43341344 | Msa0252350:CDS | 55.0% | |
| !! | AGTGAGTTGGGTGTTGCTCC+TGG | + | chr2_2:43341556-43341575 | Msa0252350:CDS | 55.0% |
| AGCAGCAGCAACCTCACGTT+TGG | - | chr2_2:43340929-43340948 | None:intergenic | 55.0% | |
| TGGCCATGTGCCCCTAACAA+AGG | + | chr2_2:43341256-43341275 | Msa0252350:CDS | 55.0% | |
| GGACCAGCTGGAAGAGACAA+TGG | + | chr2_2:43341325-43341344 | Msa0252350:CDS | 55.0% | |
| !! | AGTGAGTTGGGTGTTGCTCC+TGG | + | chr2_2:43341556-43341575 | Msa0252350:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 43340484 | 43341794 | 43340484 | ID=Msa0252350;Name=Msa0252350 |
| chr2_2 | mRNA | 43340484 | 43341794 | 43340484 | ID=Msa0252350-mRNA-1;Parent=Msa0252350;Name=Msa0252350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=51|1|1|1|1|1|2|197|282 |
| chr2_2 | exon | 43340484 | 43340976 | 43340484 | ID=Msa0252350-mRNA-1:exon:13407;Parent=Msa0252350-mRNA-1 |
| chr2_2 | exon | 43341191 | 43341794 | 43341191 | ID=Msa0252350-mRNA-1:exon:13408;Parent=Msa0252350-mRNA-1 |
| chr2_2 | five_prime_UTR | 43340484 | 43340534 | 43340484 | ID=Msa0252350-mRNA-1:five_prime_utr;Parent=Msa0252350-mRNA-1 |
| chr2_2 | CDS | 43340535 | 43340976 | 43340535 | ID=Msa0252350-mRNA-1:cds;Parent=Msa0252350-mRNA-1 |
| chr2_2 | CDS | 43341191 | 43341597 | 43341191 | ID=Msa0252350-mRNA-1:cds;Parent=Msa0252350-mRNA-1 |
| chr2_2 | three_prime_UTR | 43341598 | 43341794 | 43341598 | ID=Msa0252350-mRNA-1:three_prime_utr;Parent=Msa0252350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
