Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252780 | XP_003596142.3 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 3.71e-114 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252780 | sp|Q9SHE9|LBD4_ARATH | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 2.39e-64 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252780 | B7FJ94 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 1.77e-114 | 330 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0252780 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0252780 | Msa0291650 | 0.898656 | 4.282760e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252780 | MtrunA17_Chr2g0311601 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 3.42e-118 | 330 |
| Msa0252780 | MtrunA17_Chr4g0043421 | 73.973 | 146 | 31 | 2 | 4 | 142 | 6 | 151 | 1.81e-75 | 223 |
| Msa0252780 | MtrunA17_Chr5g0437571 | 76.364 | 110 | 26 | 0 | 9 | 118 | 2 | 111 | 1.77e-58 | 179 |
| Msa0252780 | MtrunA17_Chr3g0114061 | 75.455 | 110 | 27 | 0 | 9 | 118 | 4 | 113 | 2.11e-57 | 176 |
| Msa0252780 | MtrunA17_Chr3g0106101 | 71.429 | 112 | 32 | 0 | 12 | 123 | 6 | 117 | 3.89e-57 | 176 |
| Msa0252780 | MtrunA17_Chr4g0030001 | 72.072 | 111 | 30 | 1 | 11 | 120 | 22 | 132 | 1.63e-54 | 170 |
| Msa0252780 | MtrunA17_Chr1g0200201 | 71.028 | 107 | 31 | 0 | 14 | 120 | 73 | 179 | 8.02e-51 | 162 |
| Msa0252780 | MtrunA17_Chr5g0438091 | 58.462 | 130 | 45 | 1 | 10 | 139 | 36 | 156 | 5.06e-49 | 156 |
| Msa0252780 | MtrunA17_Chr3g0117121 | 56.934 | 137 | 59 | 0 | 12 | 148 | 9 | 145 | 1.25e-48 | 155 |
| Msa0252780 | MtrunA17_Chr6g0449641 | 61.607 | 112 | 42 | 1 | 12 | 123 | 8 | 118 | 1.39e-48 | 154 |
| Msa0252780 | MtrunA17_Chr3g0129071 | 63.063 | 111 | 41 | 0 | 10 | 120 | 44 | 154 | 3.56e-48 | 155 |
| Msa0252780 | MtrunA17_Chr4g0058651 | 58.871 | 124 | 48 | 1 | 12 | 135 | 10 | 130 | 1.07e-47 | 152 |
| Msa0252780 | MtrunA17_Chr7g0227511 | 64.078 | 103 | 37 | 0 | 12 | 114 | 10 | 112 | 4.75e-47 | 150 |
| Msa0252780 | MtrunA17_Chr6g0449651 | 54.198 | 131 | 51 | 1 | 12 | 133 | 66 | 196 | 2.43e-46 | 149 |
| Msa0252780 | MtrunA17_Chr7g0260971 | 57.143 | 112 | 47 | 1 | 5 | 115 | 6 | 117 | 8.50e-44 | 144 |
| Msa0252780 | MtrunA17_Chr5g0432451 | 62.185 | 119 | 45 | 0 | 5 | 123 | 35 | 153 | 1.77e-43 | 143 |
| Msa0252780 | MtrunA17_Chr3g0115431 | 61.765 | 102 | 39 | 0 | 12 | 113 | 8 | 109 | 2.55e-42 | 140 |
| Msa0252780 | MtrunA17_Chr5g0402611 | 62.745 | 102 | 38 | 0 | 12 | 113 | 7 | 108 | 3.08e-42 | 142 |
| Msa0252780 | MtrunA17_Chr5g0437401 | 58.491 | 106 | 44 | 0 | 5 | 110 | 3 | 108 | 4.16e-41 | 135 |
| Msa0252780 | MtrunA17_Chr3g0113891 | 59.434 | 106 | 43 | 0 | 5 | 110 | 6 | 111 | 5.54e-41 | 135 |
| Msa0252780 | MtrunA17_Chr7g0225111 | 52.632 | 114 | 52 | 1 | 12 | 123 | 4 | 117 | 2.71e-40 | 131 |
| Msa0252780 | MtrunA17_Chr8g0351721 | 54.701 | 117 | 52 | 1 | 2 | 117 | 7 | 123 | 1.58e-39 | 133 |
| Msa0252780 | MtrunA17_Chr1g0184281 | 53.982 | 113 | 51 | 1 | 3 | 114 | 5 | 117 | 4.30e-39 | 131 |
| Msa0252780 | MtrunA17_Chr8g0353981 | 61.765 | 102 | 39 | 0 | 12 | 113 | 6 | 107 | 1.39e-38 | 130 |
| Msa0252780 | MtrunA17_Chr3g0097221 | 53.704 | 108 | 50 | 0 | 12 | 119 | 6 | 113 | 4.68e-38 | 131 |
| Msa0252780 | MtrunA17_Chr5g0444351 | 50.476 | 105 | 52 | 0 | 14 | 118 | 6 | 110 | 1.10e-37 | 126 |
| Msa0252780 | MtrunA17_Chr8g0351701 | 54.902 | 102 | 45 | 1 | 13 | 113 | 23 | 124 | 6.55e-36 | 124 |
| Msa0252780 | MtrunA17_Chr7g0245871 | 54.902 | 102 | 45 | 1 | 13 | 113 | 27 | 128 | 2.71e-35 | 122 |
| Msa0252780 | MtrunA17_Chr6g0460951 | 45.000 | 120 | 65 | 1 | 11 | 129 | 38 | 157 | 2.97e-35 | 122 |
| Msa0252780 | MtrunA17_Chr1g0184271 | 57.292 | 96 | 40 | 1 | 13 | 107 | 12 | 107 | 6.15e-34 | 119 |
| Msa0252780 | MtrunA17_Chr7g0261031 | 55.000 | 100 | 44 | 1 | 9 | 107 | 4 | 103 | 7.38e-34 | 118 |
| Msa0252780 | MtrunA17_Chr5g0435641 | 48.696 | 115 | 51 | 2 | 9 | 115 | 3 | 117 | 1.40e-33 | 117 |
| Msa0252780 | MtrunA17_Chr8g0374591 | 46.154 | 104 | 56 | 0 | 10 | 113 | 5 | 108 | 2.59e-30 | 107 |
| Msa0252780 | MtrunA17_Chr7g0245861 | 56.044 | 91 | 37 | 2 | 12 | 99 | 11 | 101 | 6.80e-30 | 106 |
| Msa0252780 | MtrunA17_Chr8g0374601 | 46.154 | 104 | 56 | 0 | 10 | 113 | 23 | 126 | 2.76e-29 | 108 |
| Msa0252780 | MtrunA17_Chr6g0452671 | 35.862 | 145 | 91 | 1 | 10 | 152 | 8 | 152 | 1.14e-28 | 104 |
| Msa0252780 | MtrunA17_Chr4g0059901 | 46.000 | 100 | 54 | 0 | 7 | 106 | 4 | 103 | 4.23e-28 | 105 |
| Msa0252780 | MtrunA17_Chr6g0452691 | 37.209 | 129 | 78 | 2 | 14 | 139 | 10 | 138 | 8.06e-27 | 99.8 |
| Msa0252780 | MtrunA17_Chr6g0460941 | 47.727 | 88 | 45 | 1 | 13 | 99 | 7 | 94 | 1.21e-26 | 96.3 |
| Msa0252780 | MtrunA17_Chr8g0374581 | 45.370 | 108 | 58 | 1 | 8 | 114 | 3 | 110 | 1.22e-26 | 100 |
| Msa0252780 | MtrunA17_Chr6g0452661 | 40.952 | 105 | 61 | 1 | 14 | 117 | 10 | 114 | 1.23e-26 | 100 |
| Msa0252780 | MtrunA17_Chr2g0326051 | 45.690 | 116 | 47 | 2 | 58 | 157 | 5 | 120 | 5.90e-26 | 95.5 |
| Msa0252780 | MtrunA17_Chr8g0342351 | 38.393 | 112 | 64 | 1 | 10 | 121 | 9 | 115 | 5.78e-25 | 96.7 |
| Msa0252780 | MtrunA17_Chr2g0330201 | 38.095 | 105 | 65 | 0 | 9 | 113 | 15 | 119 | 1.30e-24 | 96.7 |
| Msa0252780 | MtrunA17_Chr4g0055441 | 40.000 | 125 | 62 | 4 | 14 | 133 | 3 | 119 | 2.41e-24 | 92.4 |
| Msa0252780 | MtrunA17_Chr4g0040831 | 32.000 | 150 | 86 | 2 | 9 | 142 | 11 | 160 | 1.19e-22 | 89.4 |
| Msa0252780 | MtrunA17_Chr2g0326041 | 69.231 | 52 | 16 | 0 | 8 | 59 | 28 | 79 | 2.49e-22 | 85.1 |
| Msa0252780 | MtrunA17_Chr5g0439111 | 38.235 | 102 | 55 | 2 | 14 | 107 | 10 | 111 | 2.21e-19 | 81.3 |
| Msa0252780 | MtrunA17_Chr4g0046201 | 37.500 | 88 | 55 | 0 | 12 | 99 | 5 | 92 | 3.24e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252780 | AT1G31320.1 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 2.43e-65 | 197 |
| Msa0252780 | AT1G16530.1 | 57.988 | 169 | 55 | 6 | 1 | 158 | 1 | 164 | 6.89e-61 | 186 |
| Msa0252780 | AT2G30130.1 | 73.729 | 118 | 29 | 1 | 12 | 127 | 7 | 124 | 4.64e-59 | 182 |
| Msa0252780 | AT1G07900.1 | 66.667 | 111 | 37 | 0 | 10 | 120 | 30 | 140 | 1.23e-51 | 163 |
| Msa0252780 | AT2G28500.1 | 65.487 | 113 | 39 | 0 | 10 | 122 | 52 | 164 | 1.75e-50 | 161 |
| Msa0252780 | AT5G63090.4 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0252780 | AT5G63090.3 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0252780 | AT5G63090.2 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0252780 | AT5G63090.1 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0252780 | AT2G30340.1 | 57.143 | 119 | 51 | 0 | 5 | 123 | 44 | 162 | 5.47e-48 | 156 |
| Msa0252780 | AT2G30340.2 | 57.143 | 119 | 51 | 0 | 5 | 123 | 45 | 163 | 5.68e-48 | 156 |
| Msa0252780 | AT3G27650.1 | 63.810 | 105 | 38 | 0 | 10 | 114 | 36 | 140 | 2.92e-47 | 151 |
| Msa0252780 | AT2G40470.2 | 65.766 | 111 | 38 | 0 | 10 | 120 | 17 | 127 | 6.43e-46 | 149 |
| Msa0252780 | AT2G40470.1 | 65.766 | 111 | 38 | 0 | 10 | 120 | 42 | 152 | 1.64e-45 | 149 |
| Msa0252780 | AT3G26660.1 | 58.095 | 105 | 42 | 1 | 11 | 113 | 1 | 105 | 1.31e-42 | 138 |
| Msa0252780 | AT3G26620.1 | 58.095 | 105 | 42 | 1 | 11 | 113 | 1 | 105 | 2.05e-42 | 137 |
| Msa0252780 | AT2G23660.2 | 61.165 | 103 | 40 | 0 | 12 | 114 | 4 | 106 | 2.16e-42 | 143 |
| Msa0252780 | AT2G23660.3 | 61.165 | 103 | 40 | 0 | 12 | 114 | 4 | 106 | 2.16e-42 | 143 |
| Msa0252780 | AT2G23660.1 | 61.165 | 103 | 40 | 0 | 12 | 114 | 4 | 106 | 2.16e-42 | 143 |
| Msa0252780 | AT5G66870.1 | 62.745 | 102 | 38 | 0 | 12 | 113 | 6 | 107 | 5.58e-42 | 142 |
| Msa0252780 | AT2G42430.1 | 55.455 | 110 | 48 | 1 | 5 | 113 | 7 | 116 | 1.37e-40 | 137 |
| Msa0252780 | AT1G65620.1 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0252780 | AT1G65620.4 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0252780 | AT1G65620.3 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0252780 | AT1G65620.5 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0252780 | AT1G65620.2 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0252780 | AT3G11090.1 | 48.462 | 130 | 64 | 1 | 5 | 134 | 3 | 129 | 4.40e-39 | 130 |
| Msa0252780 | AT4G00210.1 | 51.938 | 129 | 53 | 2 | 5 | 132 | 3 | 123 | 7.11e-38 | 129 |
| Msa0252780 | AT2G45410.1 | 51.587 | 126 | 60 | 1 | 16 | 140 | 19 | 144 | 2.76e-37 | 127 |
| Msa0252780 | AT4G00220.1 | 55.769 | 104 | 45 | 1 | 16 | 118 | 20 | 123 | 9.65e-37 | 126 |
| Msa0252780 | AT3G03760.1 | 51.852 | 108 | 51 | 1 | 12 | 118 | 50 | 157 | 2.06e-36 | 127 |
| Msa0252780 | AT2G31310.1 | 53.333 | 105 | 48 | 1 | 9 | 112 | 3 | 107 | 2.63e-35 | 121 |
| Msa0252780 | AT2G42440.1 | 57.576 | 99 | 41 | 1 | 9 | 106 | 3 | 101 | 7.12e-35 | 122 |
| Msa0252780 | AT5G06080.1 | 56.250 | 96 | 41 | 1 | 12 | 106 | 6 | 101 | 9.31e-34 | 117 |
| Msa0252780 | AT2G45420.1 | 53.333 | 105 | 41 | 2 | 16 | 119 | 40 | 137 | 5.46e-33 | 117 |
| Msa0252780 | AT3G58190.1 | 55.789 | 95 | 41 | 1 | 13 | 106 | 11 | 105 | 1.73e-32 | 115 |
| Msa0252780 | AT3G50510.1 | 47.059 | 102 | 54 | 0 | 12 | 113 | 11 | 112 | 5.31e-29 | 105 |
| Msa0252780 | AT3G50510.2 | 47.059 | 102 | 54 | 0 | 12 | 113 | 11 | 112 | 5.31e-29 | 105 |
| Msa0252780 | AT1G72980.1 | 41.905 | 105 | 61 | 0 | 9 | 113 | 9 | 113 | 4.86e-28 | 103 |
| Msa0252780 | AT3G47870.1 | 41.121 | 107 | 63 | 0 | 7 | 113 | 30 | 136 | 9.58e-27 | 102 |
| Msa0252780 | AT3G13850.1 | 39.474 | 114 | 64 | 1 | 14 | 127 | 37 | 145 | 6.49e-26 | 99.8 |
| Msa0252780 | AT5G35900.1 | 42.000 | 100 | 58 | 0 | 14 | 113 | 6 | 105 | 3.48e-25 | 96.3 |
| Msa0252780 | AT1G06280.1 | 38.462 | 91 | 56 | 0 | 14 | 104 | 25 | 115 | 2.77e-20 | 83.6 |
| Msa0252780 | AT2G19820.1 | 38.542 | 96 | 58 | 1 | 12 | 106 | 11 | 106 | 2.36e-19 | 79.0 |
| Msa0252780 | AT5G15060.1 | 42.353 | 85 | 45 | 2 | 3 | 84 | 7 | 90 | 9.50e-17 | 72.8 |
| Msa0252780 | AT1G36000.1 | 31.868 | 91 | 62 | 0 | 9 | 99 | 5 | 95 | 1.69e-15 | 68.9 |
| Msa0252780 | AT4G22700.1 | 35.294 | 102 | 62 | 3 | 14 | 113 | 6 | 105 | 5.07e-15 | 69.3 |
| Msa0252780 | AT2G19510.1 | 28.571 | 98 | 70 | 0 | 9 | 106 | 5 | 102 | 2.33e-13 | 63.2 |
Find 40 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTGTGCTTGAGCTAAT+TGG | 0.150837 | 2_2:+44367642 | None:intergenic |
| GCTGATGAACCTCACAAATT+TGG | 0.273735 | 2_2:-44371506 | Msa0252780:CDS |
| GCATCACTTCGTTGATGTTC+TGG | 0.321179 | 2_2:+44367770 | None:intergenic |
| GGTTCATCAGCTGGAAAATA+TGG | 0.335863 | 2_2:+44371518 | None:intergenic |
| TGCTTGTGCTTGAGCTAATT+GGG | 0.350545 | 2_2:+44367643 | None:intergenic |
| CAATGTAAACAAAATGTTAC+AGG | 0.371309 | 2_2:-44371456 | Msa0252780:intron |
| AAGAAAAGAACCTGCTTGAT+TGG | 0.406684 | 2_2:+44367534 | None:intergenic |
| CAAGGTCTTCCACGTTCTTA+CGG | 0.412173 | 2_2:-44367334 | Msa0252780:three_prime_UTR |
| ATGAAGCAAATGCAAGAGTA+AGG | 0.428990 | 2_2:-44367730 | Msa0252780:CDS |
| CTGCATGCAAGCTTCTTAGA+AGG | 0.457783 | 2_2:-44371568 | Msa0252780:CDS |
| GATGATGATCAGATGAGAAT+TGG | 0.476334 | 2_2:+44367597 | None:intergenic |
| CTTCCACGTTCTTACGGCCG+CGG | 0.500469 | 2_2:-44367328 | Msa0252780:three_prime_UTR |
| AATTTGTGAGGTTCATCAGC+TGG | 0.500821 | 2_2:+44371509 | None:intergenic |
| TTCCACGTTCTTACGGCCGC+GGG | 0.509288 | 2_2:-44367327 | None:intergenic |
| TCACTCGAAATAAACTTTGA+CGG | 0.513514 | 2_2:-44367374 | Msa0252780:three_prime_UTR |
| AAAATGTCACATTTGATCTA+CGG | 0.519282 | 2_2:-44367415 | Msa0252780:three_prime_UTR |
| AGAGTAAGGGATCCTGTGTA+TGG | 0.521523 | 2_2:-44367716 | Msa0252780:CDS |
| ATAAACTTTGACGGCACCGA+TGG | 0.523973 | 2_2:-44367365 | Msa0252780:three_prime_UTR |
| CAAATTTGGCAGTGTCCACA+AGG | 0.525604 | 2_2:-44371492 | Msa0252780:CDS |
| AAGTGATGCAGTTAGTTCAA+TGG | 0.533555 | 2_2:-44367756 | Msa0252780:CDS |
| CGTAAGAACGTGGAAGACCT+TGG | 0.560382 | 2_2:+44367335 | None:intergenic |
| TGAAGCAAATGCAAGAGTAA+GGG | 0.570272 | 2_2:-44367729 | Msa0252780:CDS |
| AAAATGTGTACCAATCAAGC+AGG | 0.584103 | 2_2:-44367544 | Msa0252780:CDS |
| AATTGGAGGAACATGAAGGA+TGG | 0.589346 | 2_2:-44371623 | None:intergenic |
| AGAAGCTTGCATGCAGCACA+TGG | 0.590179 | 2_2:+44371575 | None:intergenic |
| CTCCCGCGGCCGTAAGAACG+TGG | 0.591092 | 2_2:+44367325 | None:intergenic |
| GGATCCTGTGTATGGATGTG+TGG | 0.591101 | 2_2:-44367708 | Msa0252780:CDS |
| TGGAGGAACATGAAGGATGG+TGG | 0.593577 | 2_2:-44371620 | Msa0252780:exon |
| GCACCGATGGTATATTGCCA+AGG | 0.625221 | 2_2:-44367352 | Msa0252780:three_prime_UTR |
| AAGGATGGTGGTAGAAAACA+AGG | 0.626109 | 2_2:-44371608 | Msa0252780:CDS |
| AGCTAGCTAGTAAGACCACA+AGG | 0.627089 | 2_2:+44367490 | None:intergenic |
| GATCCTGTGTATGGATGTGT+GGG | 0.634230 | 2_2:-44367707 | Msa0252780:CDS |
| AGACCTTGGCAATATACCAT+CGG | 0.638285 | 2_2:+44367349 | None:intergenic |
| ATTAGCTCAAGCACAAGCAG+AGG | 0.647477 | 2_2:-44367639 | Msa0252780:CDS |
| TGGACACTGCCAAATTTGTG+AGG | 0.657276 | 2_2:+44371497 | None:intergenic |
| GATGGTGGTGACGAATTCGA+TGG | 0.671990 | 2_2:+44367569 | None:intergenic |
| ATCTACTTGTTGCTGCAGAG+AGG | 0.672706 | 2_2:+44367676 | None:intergenic |
| ACAAAATGGGACAATCCTTG+TGG | 0.674959 | 2_2:-44367505 | Msa0252780:CDS |
| GGTGGTGACGAATTCGATGG+TGG | 0.676502 | 2_2:+44367572 | None:intergenic |
| GCTCCCACACATCCATACAC+AGG | 0.680929 | 2_2:+44367704 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAATAAATTAATTA+AGG | + | chr2_2:44368036-44368055 | None:intergenic | 0.0% |
| !!! | ATTTTTAATTTTTTAAAAAT+TGG | - | chr2_2:44370476-44370495 | Msa0252780:intron | 0.0% |
| !! | TAATTAAAAAAAGAGTTATT+AGG | - | chr2_2:44367817-44367836 | Msa0252780:intron | 10.0% |
| !! | AATTAAAAAAAGAGTTATTA+GGG | - | chr2_2:44367818-44367837 | Msa0252780:intron | 10.0% |
| !!! | AAACATTAAAAATATTTTGT+TGG | + | chr2_2:44368919-44368938 | None:intergenic | 10.0% |
| !!! | ATTTAAGTTAATTTATTAAG+AGG | - | chr2_2:44370658-44370677 | Msa0252780:intron | 10.0% |
| !!! | TGTAATTTTGACATTTTTAT+CGG | + | chr2_2:44368114-44368133 | None:intergenic | 15.0% |
| !! | ATAAAAATGTCAAAATTACA+AGG | - | chr2_2:44368114-44368133 | Msa0252780:intron | 15.0% |
| !! | ATTGAATATAATTGAATGAT+GGG | - | chr2_2:44368806-44368825 | Msa0252780:intron | 15.0% |
| !! | TATACATTAGTAAAAAAGTA+TGG | + | chr2_2:44369807-44369826 | None:intergenic | 15.0% |
| !! | GTATTTAATATGGTATAATT+TGG | - | chr2_2:44370196-44370215 | Msa0252780:intron | 15.0% |
| !!! | ACATCAAATTTCAAATTTTA+AGG | + | chr2_2:44370985-44371004 | None:intergenic | 15.0% |
| !!! | AATGACACATTTTAATAACA+CGG | - | chr2_2:44368319-44368338 | Msa0252780:intron | 20.0% |
| !! | AATTTCATCCAATAAAAATC+AGG | - | chr2_2:44368373-44368392 | Msa0252780:intron | 20.0% |
| !! | ATTTCATCCAATAAAAATCA+GGG | - | chr2_2:44368374-44368393 | Msa0252780:intron | 20.0% |
| !!! | ATTTTACAAGTTACTTTGTA+GGG | - | chr2_2:44368542-44368561 | Msa0252780:intron | 20.0% |
| !! | CTAATTTCAGAAAATATGTT+TGG | - | chr2_2:44368689-44368708 | Msa0252780:intron | 20.0% |
| !! | CATTGAATATAATTGAATGA+TGG | - | chr2_2:44368805-44368824 | Msa0252780:intron | 20.0% |
| !! | TTTCTCTCATATAATTTATG+TGG | - | chr2_2:44369129-44369148 | Msa0252780:intron | 20.0% |
| !! | TCATTTAATTAACTTCATCA+TGG | - | chr2_2:44369154-44369173 | Msa0252780:intron | 20.0% |
| !! | CATTATATATAAGAACTGTA+GGG | + | chr2_2:44369327-44369346 | None:intergenic | 20.0% |
| !! | TCATTATATATAAGAACTGT+AGG | + | chr2_2:44369328-44369347 | None:intergenic | 20.0% |
| !!! | ATTGTACATGTATTTTGAAA+CGG | + | chr2_2:44369748-44369767 | None:intergenic | 20.0% |
| !!! | TAACAGTCAAAATTTTACAT+TGG | - | chr2_2:44369928-44369947 | Msa0252780:intron | 20.0% |
| !! | CAATGATGACATATATATAT+TGG | - | chr2_2:44370097-44370116 | Msa0252780:intron | 20.0% |
| !! | ATATTAAATACAACCCTAAA+GGG | + | chr2_2:44370187-44370206 | None:intergenic | 20.0% |
| !! | ATATATAAGTATTTAGTCAC+TGG | - | chr2_2:44370291-44370310 | Msa0252780:intron | 20.0% |
| !!! | AAGTTGGTTATTTTTGAAAA+GGG | + | chr2_2:44370341-44370360 | None:intergenic | 20.0% |
| !!! | TTTTAAAAATTGGTACCATT+CGG | - | chr2_2:44370486-44370505 | Msa0252780:intron | 20.0% |
| !!! | TAAGTACTATAATTGATTTG+AGG | - | chr2_2:44370511-44370530 | Msa0252780:intron | 20.0% |
| !!! | AAGTACTATAATTGATTTGA+GGG | - | chr2_2:44370512-44370531 | Msa0252780:intron | 20.0% |
| !! | TAAGTTAATTTATTAAGAGG+AGG | - | chr2_2:44370661-44370680 | Msa0252780:intron | 20.0% |
| !! | CATAGTCAAATAGTATATAT+GGG | + | chr2_2:44370758-44370777 | None:intergenic | 20.0% |
| !! | TATTAACCCTAAACTTAATT+CGG | + | chr2_2:44370826-44370845 | None:intergenic | 20.0% |
| !!! | TTTCAAGATTCTTTGATTTT+TGG | - | chr2_2:44370877-44370896 | Msa0252780:intron | 20.0% |
| ! | CAATGTAAACAAAATGTTAC+AGG | - | chr2_2:44367491-44367510 | Msa0252780:exon | 25.0% |
| ! | TGATAGAGATATGAAAGATT+AGG | + | chr2_2:44367536-44367555 | None:intergenic | 25.0% |
| ! | AAAATTCTCATGAAAACGAT+TGG | + | chr2_2:44367577-44367596 | None:intergenic | 25.0% |
| !! | TTTAATAACAAATGCTGACT+TGG | + | chr2_2:44367622-44367641 | None:intergenic | 25.0% |
| !!! | TTTTCATATTCTAAGACAAG+TGG | - | chr2_2:44367776-44367795 | Msa0252780:CDS | 25.0% |
| ! | AAATGATCTTATATAGACGA+AGG | - | chr2_2:44367890-44367909 | Msa0252780:intron | 25.0% |
| ! | AATGATCTTATATAGACGAA+GGG | - | chr2_2:44367891-44367910 | Msa0252780:intron | 25.0% |
| ! | AGGTTTCACATAAACATATT+AGG | + | chr2_2:44367943-44367962 | None:intergenic | 25.0% |
| ! | TATAATCAGATGAAAGAAGT+AGG | + | chr2_2:44367963-44367982 | None:intergenic | 25.0% |
| ! | AAATGTCAAAATTACAAGGT+CGG | - | chr2_2:44368118-44368137 | Msa0252780:intron | 25.0% |
| ! | TAAAAATTGACACACAAATG+TGG | + | chr2_2:44368176-44368195 | None:intergenic | 25.0% |
| !! | ACAAAGTAACTTGTAAAATG+CGG | + | chr2_2:44368541-44368560 | None:intergenic | 25.0% |
| !!! | CATTTTACAAGTTACTTTGT+AGG | - | chr2_2:44368541-44368560 | Msa0252780:intron | 25.0% |
| !!! | TTTTACAAGTTACTTTGTAG+GGG | - | chr2_2:44368543-44368562 | Msa0252780:intron | 25.0% |
| ! | TAATATTTGTACCAAAACCA+GGG | - | chr2_2:44368591-44368610 | Msa0252780:intron | 25.0% |
| !! | TTTGGTACCTGAAATTTTAT+TGG | - | chr2_2:44368707-44368726 | Msa0252780:intron | 25.0% |
| ! | CTTCTATCCAATAAAATTTC+AGG | + | chr2_2:44368717-44368736 | None:intergenic | 25.0% |
| !! | AATATAATTGAATGATGGGA+TGG | - | chr2_2:44368810-44368829 | Msa0252780:intron | 25.0% |
| ! | TTTGTTGGATGAGAAAAAAA+GGG | + | chr2_2:44368904-44368923 | None:intergenic | 25.0% |
| !! | TTTTGTTGGATGAGAAAAAA+AGG | + | chr2_2:44368905-44368924 | None:intergenic | 25.0% |
| ! | GAACTAGTCAAGTAAATTTA+CGG | + | chr2_2:44369003-44369022 | None:intergenic | 25.0% |
| ! | AGTGTTCAAGAAAAGTTAAA+AGG | - | chr2_2:44369233-44369252 | Msa0252780:intron | 25.0% |
| !! | ATTAACTTGATCTGTTATAG+TGG | - | chr2_2:44369280-44369299 | Msa0252780:intron | 25.0% |
| ! | AGAGATATTGTTGAACAAAT+TGG | + | chr2_2:44369573-44369592 | None:intergenic | 25.0% |
| !! | TTCTCTTGCAATGATATTTT+AGG | - | chr2_2:44369631-44369650 | Msa0252780:intron | 25.0% |
| !! | TCTCTTGCAATGATATTTTA+GGG | - | chr2_2:44369632-44369651 | Msa0252780:intron | 25.0% |
| !! | ATTCTAAAGACAAAAGGAAA+AGG | + | chr2_2:44369690-44369709 | None:intergenic | 25.0% |
| !!! | TGTGATATCAACATCTTTTT+TGG | + | chr2_2:44370009-44370028 | None:intergenic | 25.0% |
| ! | CATATTAAATACAACCCTAA+AGG | + | chr2_2:44370188-44370207 | None:intergenic | 25.0% |
| !!! | CTTTAGGGTTGTATTTAATA+TGG | - | chr2_2:44370186-44370205 | Msa0252780:intron | 25.0% |
| !!! | AGTTGGTTATTTTTGAAAAG+GGG | + | chr2_2:44370340-44370359 | None:intergenic | 25.0% |
| !!! | GAAGTTGGTTATTTTTGAAA+AGG | + | chr2_2:44370342-44370361 | None:intergenic | 25.0% |
| ! | ATTATAGTACTTATACCGAA+TGG | + | chr2_2:44370504-44370523 | None:intergenic | 25.0% |
| !!! | AGTACTATAATTGATTTGAG+GGG | - | chr2_2:44370513-44370532 | Msa0252780:intron | 25.0% |
| ! | TTATGCAGAAGTTTCATATT+TGG | + | chr2_2:44370716-44370735 | None:intergenic | 25.0% |
| ! | TCAAATAGTATATATGGGTT+TGG | + | chr2_2:44370753-44370772 | None:intergenic | 25.0% |
| ! | GCATAGTCAAATAGTATATA+TGG | + | chr2_2:44370759-44370778 | None:intergenic | 25.0% |
| ! | TATACTATTTGACTATGCAT+TGG | - | chr2_2:44370761-44370780 | Msa0252780:intron | 25.0% |
| ! | ATAGTAACCGAATTAAGTTT+AGG | - | chr2_2:44370816-44370835 | Msa0252780:intron | 25.0% |
| ! | TAGTAACCGAATTAAGTTTA+GGG | - | chr2_2:44370817-44370836 | Msa0252780:intron | 25.0% |
| ! | GCTCATACATATAAACTTAA+AGG | + | chr2_2:44371121-44371140 | None:intergenic | 25.0% |
| ! | TTCTAATTATTTGGTCCAAT+TGG | - | chr2_2:44371145-44371164 | Msa0252780:intron | 25.0% |
| !! | TTTTCTTCACCAAACAAAAT+GGG | - | chr2_2:44371429-44371448 | Msa0252780:intron | 25.0% |
| ! | AAAATGTCACATTTGATCTA+CGG | - | chr2_2:44371532-44371551 | Msa0252780:CDS | 25.0% |
| ATGAAAACGATTGGAATATC+AGG | + | chr2_2:44367568-44367587 | None:intergenic | 30.0% | |
| ! | TCGTTTTCATGAGAATTTTG+TGG | - | chr2_2:44367578-44367597 | Msa0252780:CDS | 30.0% |
| ! | AAGGGTCTTATATATAGAGA+CGG | - | chr2_2:44367706-44367725 | Msa0252780:CDS | 30.0% |
| !!! | TGTGACTAGTTTTAAGAAAC+TGG | + | chr2_2:44368294-44368313 | None:intergenic | 30.0% |
| !! | ACACATTTTAATAACACGGA+GGG | - | chr2_2:44368323-44368342 | Msa0252780:intron | 30.0% |
| ! | TTTAACGCCCTGATTTTTAT+TGG | + | chr2_2:44368384-44368403 | None:intergenic | 30.0% |
| !!! | CTTCTCTACGTTTTTTTCTT+GGG | + | chr2_2:44368444-44368463 | None:intergenic | 30.0% |
| !!! | TCTTCTCTACGTTTTTTTCT+TGG | + | chr2_2:44368445-44368464 | None:intergenic | 30.0% |
| CTAATATTTGTACCAAAACC+AGG | - | chr2_2:44368590-44368609 | Msa0252780:intron | 30.0% | |
| TTAATAACCATATGCATGAG+TGG | - | chr2_2:44368652-44368671 | Msa0252780:intron | 30.0% | |
| AATTATACCACTCATGCATA+TGG | + | chr2_2:44368662-44368681 | None:intergenic | 30.0% | |
| TATGCATGAGTGGTATAATT+AGG | - | chr2_2:44368662-44368681 | Msa0252780:intron | 30.0% | |
| !! | GGTTAGTTACAGTTGATAAT+TGG | - | chr2_2:44369301-44369320 | Msa0252780:intron | 30.0% |
| TTAGCACAAAAAAAAGACCA+AGG | - | chr2_2:44369428-44369447 | Msa0252780:intron | 30.0% | |
| TCTTAAATTCACACTTAGTG+TGG | + | chr2_2:44369489-44369508 | None:intergenic | 30.0% | |
| ACACTAAGTGTGAATTTAAG+AGG | - | chr2_2:44369488-44369507 | Msa0252780:intron | 30.0% | |
| !!! | TTCCTTTTGTCTTTAGAATC+AGG | - | chr2_2:44369691-44369710 | Msa0252780:intron | 30.0% |
| !!! | TCCTTTTGTCTTTAGAATCA+GGG | - | chr2_2:44369692-44369711 | Msa0252780:intron | 30.0% |
| !!! | TACATGTATTTTGAAACGGA+GGG | + | chr2_2:44369744-44369763 | None:intergenic | 30.0% |
| !! | CTTGGACATGTATTTTGAAA+CGG | - | chr2_2:44369969-44369988 | Msa0252780:intron | 30.0% |
| ! | TAAAGGGTTTGATAACAGAA+AGG | + | chr2_2:44370171-44370190 | None:intergenic | 30.0% |
| TTTCTGTTATCAAACCCTTT+AGG | - | chr2_2:44370170-44370189 | Msa0252780:intron | 30.0% | |
| TTCTGTTATCAAACCCTTTA+GGG | - | chr2_2:44370171-44370190 | Msa0252780:intron | 30.0% | |
| !!! | TTGGTTATTTTTGAAAAGGG+GGG | + | chr2_2:44370338-44370357 | None:intergenic | 30.0% |
| !!! | GTTGGTTATTTTTGAAAAGG+GGG | + | chr2_2:44370339-44370358 | None:intergenic | 30.0% |
| TTGAAATCTGTAAGTAGTTG+TGG | + | chr2_2:44370415-44370434 | None:intergenic | 30.0% | |
| GAATCTTGAAATTGCAAGAT+TGG | + | chr2_2:44370868-44370887 | None:intergenic | 30.0% | |
| TACAACATCGATGATATAGT+AGG | - | chr2_2:44370920-44370939 | Msa0252780:intron | 30.0% | |
| ACAACATCGATGATATAGTA+GGG | - | chr2_2:44370921-44370940 | Msa0252780:intron | 30.0% | |
| !! | ATTTGAAGGTTCTTTGGTTT+TGG | + | chr2_2:44371017-44371036 | None:intergenic | 30.0% |
| ! | ATTTGAACTCTGTCATTTGA+AGG | + | chr2_2:44371031-44371050 | None:intergenic | 30.0% |
| TGAGCGACATTCTAATTATT+TGG | - | chr2_2:44371136-44371155 | Msa0252780:intron | 30.0% | |
| ! | CTTTTCTTCACCAAACAAAA+TGG | - | chr2_2:44371428-44371447 | Msa0252780:intron | 30.0% |
| TCACTCGAAATAAACTTTGA+CGG | - | chr2_2:44371573-44371592 | Msa0252780:CDS | 30.0% | |
| !! | ATTCCCGTGATTTTAGCAAA+AGG | - | chr2_2:44367687-44367706 | Msa0252780:CDS | 35.0% |
| !! | TTCCCGTGATTTTAGCAAAA+GGG | - | chr2_2:44367688-44367707 | Msa0252780:CDS | 35.0% |
| ! | AGACCCTTTTGCTAAAATCA+CGG | + | chr2_2:44367694-44367713 | None:intergenic | 35.0% |
| AAATTGACACACAAATGTGG+AGG | + | chr2_2:44368173-44368192 | None:intergenic | 35.0% | |
| !! | GACACATTTTAATAACACGG+AGG | - | chr2_2:44368322-44368341 | Msa0252780:intron | 35.0% |
| AGTTGTAAGTGTCATCTTGT+TGG | - | chr2_2:44368467-44368486 | Msa0252780:intron | 35.0% | |
| TAAGTGTCATCTTGTTGGAT+AGG | - | chr2_2:44368472-44368491 | Msa0252780:intron | 35.0% | |
| ! | TGCGGATTAATACTAAAGCT+GGG | + | chr2_2:44368523-44368542 | None:intergenic | 35.0% |
| ! | ATGCGGATTAATACTAAAGC+TGG | + | chr2_2:44368524-44368543 | None:intergenic | 35.0% |
| ACCAAAACCAGGGTATAATT+AGG | - | chr2_2:44368601-44368620 | Msa0252780:intron | 35.0% | |
| ! | ACCTAATTATACCCTGGTTT+TGG | + | chr2_2:44368605-44368624 | None:intergenic | 35.0% |
| CCTTATACCTAATTATACCC+TGG | + | chr2_2:44368611-44368630 | None:intergenic | 35.0% | |
| CCAGGGTATAATTAGGTATA+AGG | - | chr2_2:44368608-44368627 | Msa0252780:intron | 35.0% | |
| CAAAAAAAAGACCAAGGATC+AGG | - | chr2_2:44369434-44369453 | Msa0252780:intron | 35.0% | |
| ! | ATTTTTATGCACCTGATCCT+TGG | + | chr2_2:44369448-44369467 | None:intergenic | 35.0% |
| AGTGTGGTTTCATGTAGTAA+AGG | + | chr2_2:44369473-44369492 | None:intergenic | 35.0% | |
| ATTGTTAGCTGCATCATTAC+TGG | - | chr2_2:44369534-44369553 | Msa0252780:intron | 35.0% | |
| ! | ACCCTGATTCTAAAGACAAA+AGG | + | chr2_2:44369696-44369715 | None:intergenic | 35.0% |
| !!! | GTACATGTATTTTGAAACGG+AGG | + | chr2_2:44369745-44369764 | None:intergenic | 35.0% |
| TTACATTGGCATATGTGAAG+TGG | - | chr2_2:44369942-44369961 | Msa0252780:intron | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+GGG | - | chr2_2:44369973-44369992 | Msa0252780:intron | 35.0% |
| !!! | TTATTTTTGAAAAGGGGGGA+TGG | + | chr2_2:44370334-44370353 | None:intergenic | 35.0% |
| ATAGTCAAAAGGAGACGATA+AGG | + | chr2_2:44370373-44370392 | None:intergenic | 35.0% | |
| TCTGTAAGTAGTTGTGGATA+TGG | + | chr2_2:44370409-44370428 | None:intergenic | 35.0% | |
| ! | CTCCATTTAAAGCCATAACA+AGG | - | chr2_2:44370563-44370582 | Msa0252780:intron | 35.0% |
| !! | AGCCTTGTTATGGCTTTAAA+TGG | + | chr2_2:44370568-44370587 | None:intergenic | 35.0% |
| !! | TGTCATACAAAGCCTTGTTA+TGG | + | chr2_2:44370578-44370597 | None:intergenic | 35.0% |
| ! | AGATCTTACGGTGTCAATTT+GGG | + | chr2_2:44370607-44370626 | None:intergenic | 35.0% |
| CAACATCGATGATATAGTAG+GGG | - | chr2_2:44370922-44370941 | Msa0252780:intron | 35.0% | |
| AACATCGATGATATAGTAGG+GGG | - | chr2_2:44370923-44370942 | Msa0252780:intron | 35.0% | |
| ! | TCTGTCATTTGAAGGTTCTT+TGG | + | chr2_2:44371023-44371042 | None:intergenic | 35.0% |
| GTTTACTCCTGTTATATTCG+CGG | + | chr2_2:44371089-44371108 | None:intergenic | 35.0% | |
| AATTATTTGGTCCAATTGGC+AGG | - | chr2_2:44371149-44371168 | Msa0252780:intron | 35.0% | |
| AAGTGATGCAGTTAGTTCAA+TGG | - | chr2_2:44371191-44371210 | Msa0252780:intron | 35.0% | |
| ATGAAGCAAATGCAAGAGTA+AGG | - | chr2_2:44371217-44371236 | Msa0252780:intron | 35.0% | |
| TGAAGCAAATGCAAGAGTAA+GGG | - | chr2_2:44371218-44371237 | Msa0252780:intron | 35.0% | |
| GATGATGATCAGATGAGAAT+TGG | + | chr2_2:44371353-44371372 | None:intergenic | 35.0% | |
| ! | GATTGGTACACATTTTCTGA+TGG | + | chr2_2:44371399-44371418 | None:intergenic | 35.0% |
| AAAATGTGTACCAATCAAGC+AGG | - | chr2_2:44371403-44371422 | Msa0252780:intron | 35.0% | |
| AAGAAAAGAACCTGCTTGAT+TGG | + | chr2_2:44371416-44371435 | None:intergenic | 35.0% | |
| ! | AAGGATTGTCCCATTTTGTT+TGG | + | chr2_2:44371441-44371460 | None:intergenic | 35.0% |
| TAGTGTAAAAAGCCATTGCT+AGG | - | chr2_2:44371504-44371523 | Msa0252780:CDS | 35.0% | |
| AGTGTAAAAAGCCATTGCTA+GGG | - | chr2_2:44371505-44371524 | Msa0252780:CDS | 35.0% | |
| !! | ACATTTTTCAACCCTAGCAA+TGG | + | chr2_2:44371519-44371538 | None:intergenic | 35.0% |
| !!! | TTCGAGTGATTTTCAAGTGT+CGG | + | chr2_2:44371562-44371581 | None:intergenic | 35.0% |
| ! | AAGGATGGTGGTAGAAAACA+AGG | - | chr2_2:44367339-44367358 | Msa0252780:three_prime_UTR | 40.0% |
| GGTTCATCAGCTGGAAAATA+TGG | + | chr2_2:44367432-44367451 | None:intergenic | 40.0% | |
| AATTTGTGAGGTTCATCAGC+TGG | + | chr2_2:44367441-44367460 | None:intergenic | 40.0% | |
| GCTGATGAACCTCACAAATT+TGG | - | chr2_2:44367441-44367460 | Msa0252780:three_prime_UTR | 40.0% | |
| ! | GACCCTTTTGCTAAAATCAC+GGG | + | chr2_2:44367693-44367712 | None:intergenic | 40.0% |
| ! | GGTCTTATATATAGAGACGG+AGG | - | chr2_2:44367709-44367728 | Msa0252780:CDS | 40.0% |
| TGTGACTACGGTTTGAACTT+CGG | - | chr2_2:44368145-44368164 | Msa0252780:intron | 40.0% | |
| CATATGTGAAGTGGTTGACT+TGG | - | chr2_2:44369951-44369970 | Msa0252780:intron | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr2_2:44369972-44369991 | Msa0252780:intron | 40.0% |
| ACAGAAAGGTGGATAACTGA+GGG | + | chr2_2:44370157-44370176 | None:intergenic | 40.0% | |
| AACAGAAAGGTGGATAACTG+AGG | + | chr2_2:44370158-44370177 | None:intergenic | 40.0% | |
| ! | AGGGTTTGATAACAGAAAGG+TGG | + | chr2_2:44370168-44370187 | None:intergenic | 40.0% |
| GATAAGGTAGATGCTGAAGT+TGG | + | chr2_2:44370357-44370376 | None:intergenic | 40.0% | |
| !! | GTCTCCTTTTGACTATGCAT+GGG | - | chr2_2:44370377-44370396 | Msa0252780:intron | 40.0% |
| AGATCCCATGCATAGTCAAA+AGG | + | chr2_2:44370384-44370403 | None:intergenic | 40.0% | |
| !! | TTTTGACTATGCATGGGATC+TGG | - | chr2_2:44370383-44370402 | Msa0252780:intron | 40.0% |
| ! | GAGATCTTACGGTGTCAATT+TGG | + | chr2_2:44370608-44370627 | None:intergenic | 40.0% |
| ATCCACTCAAGTTAACACGA+TGG | + | chr2_2:44370640-44370659 | None:intergenic | 40.0% | |
| TATATGGGTTTGGACACACA+AGG | + | chr2_2:44370743-44370762 | None:intergenic | 40.0% | |
| ACCGAATTCGCTCAAATTAC+AGG | - | chr2_2:44370949-44370968 | Msa0252780:intron | 40.0% | |
| CCCTGTAATTTGAGCGAATT+CGG | + | chr2_2:44370953-44370972 | None:intergenic | 40.0% | |
| CCGAATTCGCTCAAATTACA+GGG | - | chr2_2:44370950-44370969 | Msa0252780:intron | 40.0% | |
| CGAATTCGCTCAAATTACAG+GGG | - | chr2_2:44370951-44370970 | Msa0252780:intron | 40.0% | |
| CGAAAAACCGCGAATATAAC+AGG | - | chr2_2:44371079-44371098 | Msa0252780:intron | 40.0% | |
| TGCTTGTGCTTGAGCTAATT+GGG | + | chr2_2:44371307-44371326 | None:intergenic | 40.0% | |
| ! | TGGTACACATTTTCTGATGG+TGG | + | chr2_2:44371396-44371415 | None:intergenic | 40.0% |
| ACAAAATGGGACAATCCTTG+TGG | - | chr2_2:44371442-44371461 | Msa0252780:intron | 40.0% | |
| AGACCTTGGCAATATACCAT+CGG | + | chr2_2:44371601-44371620 | None:intergenic | 40.0% | |
| CTGCATGCAAGCTTCTTAGA+AGG | - | chr2_2:44367379-44367398 | Msa0252780:three_prime_UTR | 45.0% | |
| TGGACACTGCCAAATTTGTG+AGG | + | chr2_2:44367453-44367472 | None:intergenic | 45.0% | |
| CAAATTTGGCAGTGTCCACA+AGG | - | chr2_2:44367455-44367474 | Msa0252780:three_prime_UTR | 45.0% | |
| ! | GCAGTGTCCACAAGGTTTTT+GGG | - | chr2_2:44367463-44367482 | Msa0252780:three_prime_UTR | 45.0% |
| ! | CAGTGTCCACAAGGTTTTTG+GGG | - | chr2_2:44367464-44367483 | Msa0252780:three_prime_UTR | 45.0% |
| ! | ACGGAGGGAGTACATGATTT+AGG | - | chr2_2:44368338-44368357 | Msa0252780:intron | 45.0% |
| GTTAGCTGCATCATTACTGG+TGG | - | chr2_2:44369537-44369556 | Msa0252780:intron | 45.0% | |
| CTTTATGACCAACGCATGCA+TGG | - | chr2_2:44369593-44369612 | Msa0252780:intron | 45.0% | |
| ATGAAAAGCCATGCATGCGT+TGG | + | chr2_2:44369604-44369623 | None:intergenic | 45.0% | |
| ! | GCATGCATGGCTTTTCATCT+TGG | - | chr2_2:44369606-44369625 | Msa0252780:intron | 45.0% |
| CAGAAAGGTGGATAACTGAG+GGG | + | chr2_2:44370156-44370175 | None:intergenic | 45.0% | |
| !! | CGTCTCCTTTTGACTATGCA+TGG | - | chr2_2:44370376-44370395 | Msa0252780:intron | 45.0% |
| !! | GGTGCTGGTTTGAGATCTTA+CGG | + | chr2_2:44370619-44370638 | None:intergenic | 45.0% |
| TCAAGTTAACACGATGGTGC+TGG | + | chr2_2:44370634-44370653 | None:intergenic | 45.0% | |
| ! | CACCATCGTGTTAACTTGAG+TGG | - | chr2_2:44370635-44370654 | Msa0252780:intron | 45.0% |
| TTCTGGTAGTTCCTGCCAAT+TGG | + | chr2_2:44371163-44371182 | None:intergenic | 45.0% | |
| GCATCACTTCGTTGATGTTC+TGG | + | chr2_2:44371180-44371199 | None:intergenic | 45.0% | |
| AGAGTAAGGGATCCTGTGTA+TGG | - | chr2_2:44371231-44371250 | Msa0252780:intron | 45.0% | |
| GATCCTGTGTATGGATGTGT+GGG | - | chr2_2:44371240-44371259 | Msa0252780:intron | 45.0% | |
| ! | ATCTACTTGTTGCTGCAGAG+AGG | + | chr2_2:44371274-44371293 | None:intergenic | 45.0% |
| CTGCTTGTGCTTGAGCTAAT+TGG | + | chr2_2:44371308-44371327 | None:intergenic | 45.0% | |
| ATTAGCTCAAGCACAAGCAG+AGG | - | chr2_2:44371308-44371327 | Msa0252780:intron | 45.0% | |
| AGCTAGCTAGTAAGACCACA+AGG | + | chr2_2:44371460-44371479 | None:intergenic | 45.0% | |
| ! | ATAAACTTTGACGGCACCGA+TGG | - | chr2_2:44371582-44371601 | Msa0252780:CDS | 45.0% |
| CAAGGTCTTCCACGTTCTTA+CGG | - | chr2_2:44371613-44371632 | Msa0252780:CDS | 45.0% | |
| AGAAGCTTGCATGCAGCACA+TGG | + | chr2_2:44367375-44367394 | None:intergenic | 50.0% | |
| ! | GGCAGTGTCCACAAGGTTTT+TGG | - | chr2_2:44367462-44367481 | Msa0252780:three_prime_UTR | 50.0% |
| TGCTAGCCCCAAAAACCTTG+TGG | + | chr2_2:44367473-44367492 | None:intergenic | 50.0% | |
| AAGGTCGGACGATGTGACTA+CGG | - | chr2_2:44368133-44368152 | Msa0252780:intron | 50.0% | |
| TTAAATGGAGTCCCCGCAAG+TGG | + | chr2_2:44370553-44370572 | None:intergenic | 50.0% | |
| GGATCCTGTGTATGGATGTG+TGG | - | chr2_2:44371239-44371258 | Msa0252780:intron | 50.0% | |
| ! | GATGGTGGTGACGAATTCGA+TGG | + | chr2_2:44371381-44371400 | None:intergenic | 50.0% |
| ! | GCACCGATGGTATATTGCCA+AGG | - | chr2_2:44371595-44371614 | Msa0252780:CDS | 50.0% |
| CGTAAGAACGTGGAAGACCT+TGG | + | chr2_2:44371615-44371634 | None:intergenic | 50.0% | |
| GCTCCCACACATCCATACAC+AGG | + | chr2_2:44371246-44371265 | None:intergenic | 55.0% | |
| ! | GGTGGTGACGAATTCGATGG+TGG | + | chr2_2:44371378-44371397 | None:intergenic | 55.0% |
| CTGACCTCTCCGTCCACTTG+CGG | - | chr2_2:44370537-44370556 | Msa0252780:intron | 60.0% | |
| TGACCTCTCCGTCCACTTGC+GGG | - | chr2_2:44370538-44370557 | Msa0252780:intron | 60.0% | |
| ATGGAGTCCCCGCAAGTGGA+CGG | + | chr2_2:44370549-44370568 | None:intergenic | 60.0% | |
| GACCTCTCCGTCCACTTGCG+GGG | - | chr2_2:44370539-44370558 | Msa0252780:intron | 65.0% | |
| GTCCCCGCAAGTGGACGGAG+AGG | + | chr2_2:44370544-44370563 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 44367328 | 44371641 | 44367328 | ID=Msa0252780;Name=Msa0252780 |
| chr2_2 | mRNA | 44367328 | 44371641 | 44367328 | ID=Msa0252780-mRNA-1;Parent=Msa0252780;Name=Msa0252780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=8|1|1|1|1|1|2|168|159 |
| chr2_2 | exon | 44367328 | 44367798 | 44367328 | ID=Msa0252780-mRNA-1:exon:13632;Parent=Msa0252780-mRNA-1 |
| chr2_2 | exon | 44371457 | 44371641 | 44371457 | ID=Msa0252780-mRNA-1:exon:13631;Parent=Msa0252780-mRNA-1 |
| chr2_2 | five_prime_UTR | 44371634 | 44371641 | 44371634 | ID=Msa0252780-mRNA-1:five_prime_utr;Parent=Msa0252780-mRNA-1 |
| chr2_2 | CDS | 44371457 | 44371633 | 44371457 | ID=Msa0252780-mRNA-1:cds;Parent=Msa0252780-mRNA-1 |
| chr2_2 | CDS | 44367496 | 44367798 | 44367496 | ID=Msa0252780-mRNA-1:cds;Parent=Msa0252780-mRNA-1 |
| chr2_2 | three_prime_UTR | 44367328 | 44367495 | 44367328 | ID=Msa0252780-mRNA-1:three_prime_utr;Parent=Msa0252780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
