Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291650 | XP_003596142.3 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 3.71e-114 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291650 | sp|Q9SHE9|LBD4_ARATH | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 2.39e-64 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291650 | B7FJ94 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 1.77e-114 | 330 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0291650 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0216530 | Msa0291650 | 0.825528 | 4.462502e-54 | -8.615850e-47 |
| Msa0252780 | Msa0291650 | 0.898656 | 4.282760e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291650 | MtrunA17_Chr2g0311601 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 3.42e-118 | 330 |
| Msa0291650 | MtrunA17_Chr4g0043421 | 73.973 | 146 | 31 | 2 | 4 | 142 | 6 | 151 | 1.81e-75 | 223 |
| Msa0291650 | MtrunA17_Chr5g0437571 | 76.364 | 110 | 26 | 0 | 9 | 118 | 2 | 111 | 1.77e-58 | 179 |
| Msa0291650 | MtrunA17_Chr3g0114061 | 75.455 | 110 | 27 | 0 | 9 | 118 | 4 | 113 | 2.11e-57 | 176 |
| Msa0291650 | MtrunA17_Chr3g0106101 | 71.429 | 112 | 32 | 0 | 12 | 123 | 6 | 117 | 3.89e-57 | 176 |
| Msa0291650 | MtrunA17_Chr4g0030001 | 72.072 | 111 | 30 | 1 | 11 | 120 | 22 | 132 | 1.63e-54 | 170 |
| Msa0291650 | MtrunA17_Chr1g0200201 | 71.028 | 107 | 31 | 0 | 14 | 120 | 73 | 179 | 8.02e-51 | 162 |
| Msa0291650 | MtrunA17_Chr5g0438091 | 58.462 | 130 | 45 | 1 | 10 | 139 | 36 | 156 | 5.06e-49 | 156 |
| Msa0291650 | MtrunA17_Chr3g0117121 | 56.934 | 137 | 59 | 0 | 12 | 148 | 9 | 145 | 1.25e-48 | 155 |
| Msa0291650 | MtrunA17_Chr6g0449641 | 61.607 | 112 | 42 | 1 | 12 | 123 | 8 | 118 | 1.39e-48 | 154 |
| Msa0291650 | MtrunA17_Chr3g0129071 | 63.063 | 111 | 41 | 0 | 10 | 120 | 44 | 154 | 3.56e-48 | 155 |
| Msa0291650 | MtrunA17_Chr4g0058651 | 58.871 | 124 | 48 | 1 | 12 | 135 | 10 | 130 | 1.07e-47 | 152 |
| Msa0291650 | MtrunA17_Chr7g0227511 | 64.078 | 103 | 37 | 0 | 12 | 114 | 10 | 112 | 4.75e-47 | 150 |
| Msa0291650 | MtrunA17_Chr6g0449651 | 54.198 | 131 | 51 | 1 | 12 | 133 | 66 | 196 | 2.43e-46 | 149 |
| Msa0291650 | MtrunA17_Chr7g0260971 | 57.143 | 112 | 47 | 1 | 5 | 115 | 6 | 117 | 8.50e-44 | 144 |
| Msa0291650 | MtrunA17_Chr5g0432451 | 62.185 | 119 | 45 | 0 | 5 | 123 | 35 | 153 | 1.77e-43 | 143 |
| Msa0291650 | MtrunA17_Chr3g0115431 | 61.765 | 102 | 39 | 0 | 12 | 113 | 8 | 109 | 2.55e-42 | 140 |
| Msa0291650 | MtrunA17_Chr5g0402611 | 62.745 | 102 | 38 | 0 | 12 | 113 | 7 | 108 | 3.08e-42 | 142 |
| Msa0291650 | MtrunA17_Chr5g0437401 | 58.491 | 106 | 44 | 0 | 5 | 110 | 3 | 108 | 4.16e-41 | 135 |
| Msa0291650 | MtrunA17_Chr3g0113891 | 59.434 | 106 | 43 | 0 | 5 | 110 | 6 | 111 | 5.54e-41 | 135 |
| Msa0291650 | MtrunA17_Chr7g0225111 | 52.632 | 114 | 52 | 1 | 12 | 123 | 4 | 117 | 2.71e-40 | 131 |
| Msa0291650 | MtrunA17_Chr8g0351721 | 54.701 | 117 | 52 | 1 | 2 | 117 | 7 | 123 | 1.58e-39 | 133 |
| Msa0291650 | MtrunA17_Chr1g0184281 | 53.982 | 113 | 51 | 1 | 3 | 114 | 5 | 117 | 4.30e-39 | 131 |
| Msa0291650 | MtrunA17_Chr8g0353981 | 61.765 | 102 | 39 | 0 | 12 | 113 | 6 | 107 | 1.39e-38 | 130 |
| Msa0291650 | MtrunA17_Chr3g0097221 | 53.704 | 108 | 50 | 0 | 12 | 119 | 6 | 113 | 4.68e-38 | 131 |
| Msa0291650 | MtrunA17_Chr5g0444351 | 50.476 | 105 | 52 | 0 | 14 | 118 | 6 | 110 | 1.10e-37 | 126 |
| Msa0291650 | MtrunA17_Chr8g0351701 | 54.902 | 102 | 45 | 1 | 13 | 113 | 23 | 124 | 6.55e-36 | 124 |
| Msa0291650 | MtrunA17_Chr7g0245871 | 54.902 | 102 | 45 | 1 | 13 | 113 | 27 | 128 | 2.71e-35 | 122 |
| Msa0291650 | MtrunA17_Chr6g0460951 | 45.000 | 120 | 65 | 1 | 11 | 129 | 38 | 157 | 2.97e-35 | 122 |
| Msa0291650 | MtrunA17_Chr1g0184271 | 57.292 | 96 | 40 | 1 | 13 | 107 | 12 | 107 | 6.15e-34 | 119 |
| Msa0291650 | MtrunA17_Chr7g0261031 | 55.000 | 100 | 44 | 1 | 9 | 107 | 4 | 103 | 7.38e-34 | 118 |
| Msa0291650 | MtrunA17_Chr5g0435641 | 48.696 | 115 | 51 | 2 | 9 | 115 | 3 | 117 | 1.40e-33 | 117 |
| Msa0291650 | MtrunA17_Chr8g0374591 | 46.154 | 104 | 56 | 0 | 10 | 113 | 5 | 108 | 2.59e-30 | 107 |
| Msa0291650 | MtrunA17_Chr7g0245861 | 56.044 | 91 | 37 | 2 | 12 | 99 | 11 | 101 | 6.80e-30 | 106 |
| Msa0291650 | MtrunA17_Chr8g0374601 | 46.154 | 104 | 56 | 0 | 10 | 113 | 23 | 126 | 2.76e-29 | 108 |
| Msa0291650 | MtrunA17_Chr6g0452671 | 35.862 | 145 | 91 | 1 | 10 | 152 | 8 | 152 | 1.14e-28 | 104 |
| Msa0291650 | MtrunA17_Chr4g0059901 | 46.000 | 100 | 54 | 0 | 7 | 106 | 4 | 103 | 4.23e-28 | 105 |
| Msa0291650 | MtrunA17_Chr6g0452691 | 37.209 | 129 | 78 | 2 | 14 | 139 | 10 | 138 | 8.06e-27 | 99.8 |
| Msa0291650 | MtrunA17_Chr6g0460941 | 47.727 | 88 | 45 | 1 | 13 | 99 | 7 | 94 | 1.21e-26 | 96.3 |
| Msa0291650 | MtrunA17_Chr8g0374581 | 45.370 | 108 | 58 | 1 | 8 | 114 | 3 | 110 | 1.22e-26 | 100 |
| Msa0291650 | MtrunA17_Chr6g0452661 | 40.952 | 105 | 61 | 1 | 14 | 117 | 10 | 114 | 1.23e-26 | 100 |
| Msa0291650 | MtrunA17_Chr2g0326051 | 45.690 | 116 | 47 | 2 | 58 | 157 | 5 | 120 | 5.90e-26 | 95.5 |
| Msa0291650 | MtrunA17_Chr8g0342351 | 38.393 | 112 | 64 | 1 | 10 | 121 | 9 | 115 | 5.78e-25 | 96.7 |
| Msa0291650 | MtrunA17_Chr2g0330201 | 38.095 | 105 | 65 | 0 | 9 | 113 | 15 | 119 | 1.30e-24 | 96.7 |
| Msa0291650 | MtrunA17_Chr4g0055441 | 40.000 | 125 | 62 | 4 | 14 | 133 | 3 | 119 | 2.41e-24 | 92.4 |
| Msa0291650 | MtrunA17_Chr4g0040831 | 32.000 | 150 | 86 | 2 | 9 | 142 | 11 | 160 | 1.19e-22 | 89.4 |
| Msa0291650 | MtrunA17_Chr2g0326041 | 69.231 | 52 | 16 | 0 | 8 | 59 | 28 | 79 | 2.49e-22 | 85.1 |
| Msa0291650 | MtrunA17_Chr5g0439111 | 38.235 | 102 | 55 | 2 | 14 | 107 | 10 | 111 | 2.21e-19 | 81.3 |
| Msa0291650 | MtrunA17_Chr4g0046201 | 37.500 | 88 | 55 | 0 | 12 | 99 | 5 | 92 | 3.24e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291650 | AT1G31320.1 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 2.43e-65 | 197 |
| Msa0291650 | AT1G16530.1 | 57.988 | 169 | 55 | 6 | 1 | 158 | 1 | 164 | 6.89e-61 | 186 |
| Msa0291650 | AT2G30130.1 | 73.729 | 118 | 29 | 1 | 12 | 127 | 7 | 124 | 4.64e-59 | 182 |
| Msa0291650 | AT1G07900.1 | 66.667 | 111 | 37 | 0 | 10 | 120 | 30 | 140 | 1.23e-51 | 163 |
| Msa0291650 | AT2G28500.1 | 65.487 | 113 | 39 | 0 | 10 | 122 | 52 | 164 | 1.75e-50 | 161 |
| Msa0291650 | AT5G63090.4 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0291650 | AT5G63090.3 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0291650 | AT5G63090.2 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0291650 | AT5G63090.1 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0291650 | AT2G30340.1 | 57.143 | 119 | 51 | 0 | 5 | 123 | 44 | 162 | 5.47e-48 | 156 |
| Msa0291650 | AT2G30340.2 | 57.143 | 119 | 51 | 0 | 5 | 123 | 45 | 163 | 5.68e-48 | 156 |
| Msa0291650 | AT3G27650.1 | 63.810 | 105 | 38 | 0 | 10 | 114 | 36 | 140 | 2.92e-47 | 151 |
| Msa0291650 | AT2G40470.2 | 65.766 | 111 | 38 | 0 | 10 | 120 | 17 | 127 | 6.43e-46 | 149 |
| Msa0291650 | AT2G40470.1 | 65.766 | 111 | 38 | 0 | 10 | 120 | 42 | 152 | 1.64e-45 | 149 |
| Msa0291650 | AT3G26660.1 | 58.095 | 105 | 42 | 1 | 11 | 113 | 1 | 105 | 1.31e-42 | 138 |
| Msa0291650 | AT3G26620.1 | 58.095 | 105 | 42 | 1 | 11 | 113 | 1 | 105 | 2.05e-42 | 137 |
| Msa0291650 | AT2G23660.2 | 61.165 | 103 | 40 | 0 | 12 | 114 | 4 | 106 | 2.16e-42 | 143 |
| Msa0291650 | AT2G23660.3 | 61.165 | 103 | 40 | 0 | 12 | 114 | 4 | 106 | 2.16e-42 | 143 |
| Msa0291650 | AT2G23660.1 | 61.165 | 103 | 40 | 0 | 12 | 114 | 4 | 106 | 2.16e-42 | 143 |
| Msa0291650 | AT5G66870.1 | 62.745 | 102 | 38 | 0 | 12 | 113 | 6 | 107 | 5.58e-42 | 142 |
| Msa0291650 | AT2G42430.1 | 55.455 | 110 | 48 | 1 | 5 | 113 | 7 | 116 | 1.37e-40 | 137 |
| Msa0291650 | AT1G65620.1 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0291650 | AT1G65620.4 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0291650 | AT1G65620.3 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0291650 | AT1G65620.5 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0291650 | AT1G65620.2 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0291650 | AT3G11090.1 | 48.462 | 130 | 64 | 1 | 5 | 134 | 3 | 129 | 4.40e-39 | 130 |
| Msa0291650 | AT4G00210.1 | 51.938 | 129 | 53 | 2 | 5 | 132 | 3 | 123 | 7.11e-38 | 129 |
| Msa0291650 | AT2G45410.1 | 51.587 | 126 | 60 | 1 | 16 | 140 | 19 | 144 | 2.76e-37 | 127 |
| Msa0291650 | AT4G00220.1 | 55.769 | 104 | 45 | 1 | 16 | 118 | 20 | 123 | 9.65e-37 | 126 |
| Msa0291650 | AT3G03760.1 | 51.852 | 108 | 51 | 1 | 12 | 118 | 50 | 157 | 2.06e-36 | 127 |
| Msa0291650 | AT2G31310.1 | 53.333 | 105 | 48 | 1 | 9 | 112 | 3 | 107 | 2.63e-35 | 121 |
| Msa0291650 | AT2G42440.1 | 57.576 | 99 | 41 | 1 | 9 | 106 | 3 | 101 | 7.12e-35 | 122 |
| Msa0291650 | AT5G06080.1 | 56.250 | 96 | 41 | 1 | 12 | 106 | 6 | 101 | 9.31e-34 | 117 |
| Msa0291650 | AT2G45420.1 | 53.333 | 105 | 41 | 2 | 16 | 119 | 40 | 137 | 5.46e-33 | 117 |
| Msa0291650 | AT3G58190.1 | 55.789 | 95 | 41 | 1 | 13 | 106 | 11 | 105 | 1.73e-32 | 115 |
| Msa0291650 | AT3G50510.1 | 47.059 | 102 | 54 | 0 | 12 | 113 | 11 | 112 | 5.31e-29 | 105 |
| Msa0291650 | AT3G50510.2 | 47.059 | 102 | 54 | 0 | 12 | 113 | 11 | 112 | 5.31e-29 | 105 |
| Msa0291650 | AT1G72980.1 | 41.905 | 105 | 61 | 0 | 9 | 113 | 9 | 113 | 4.86e-28 | 103 |
| Msa0291650 | AT3G47870.1 | 41.121 | 107 | 63 | 0 | 7 | 113 | 30 | 136 | 9.58e-27 | 102 |
| Msa0291650 | AT3G13850.1 | 39.474 | 114 | 64 | 1 | 14 | 127 | 37 | 145 | 6.49e-26 | 99.8 |
| Msa0291650 | AT5G35900.1 | 42.000 | 100 | 58 | 0 | 14 | 113 | 6 | 105 | 3.48e-25 | 96.3 |
| Msa0291650 | AT1G06280.1 | 38.462 | 91 | 56 | 0 | 14 | 104 | 25 | 115 | 2.77e-20 | 83.6 |
| Msa0291650 | AT2G19820.1 | 38.542 | 96 | 58 | 1 | 12 | 106 | 11 | 106 | 2.36e-19 | 79.0 |
| Msa0291650 | AT5G15060.1 | 42.353 | 85 | 45 | 2 | 3 | 84 | 7 | 90 | 9.50e-17 | 72.8 |
| Msa0291650 | AT1G36000.1 | 31.868 | 91 | 62 | 0 | 9 | 99 | 5 | 95 | 1.69e-15 | 68.9 |
| Msa0291650 | AT4G22700.1 | 35.294 | 102 | 62 | 3 | 14 | 113 | 6 | 105 | 5.07e-15 | 69.3 |
| Msa0291650 | AT2G19510.1 | 28.571 | 98 | 70 | 0 | 9 | 106 | 5 | 102 | 2.33e-13 | 63.2 |
Find 40 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTGTGCTTGAGCTAAT+TGG | 0.150837 | 2_3:-40324292 | None:intergenic |
| GCTGATGAACCTCACAAATT+TGG | 0.273735 | 2_3:+40320686 | Msa0291650:CDS |
| GCATCACTTCGTTGATGTTC+TGG | 0.321179 | 2_3:-40324164 | None:intergenic |
| GGTTCATCAGCTGGAAAATA+TGG | 0.335863 | 2_3:-40320674 | None:intergenic |
| TGCTTGTGCTTGAGCTAATT+GGG | 0.350545 | 2_3:-40324291 | None:intergenic |
| CAATGTAAACAAAATGTTAC+AGG | 0.371309 | 2_3:+40320736 | Msa0291650:CDS |
| AAGAAAAGAACCTGCTTGAT+TGG | 0.406684 | 2_3:-40324400 | None:intergenic |
| CAAGGTCTTCCACGTTCTTA+CGG | 0.412173 | 2_3:+40324600 | Msa0291650:three_prime_UTR |
| ATGAAGCAAATGCAAGAGTA+AGG | 0.428990 | 2_3:+40324204 | Msa0291650:CDS |
| CTGCATGCAAGCTTCTTAGA+AGG | 0.457783 | 2_3:+40320624 | Msa0291650:CDS |
| GATGATGATCAGATGAGAAT+TGG | 0.476334 | 2_3:-40324337 | None:intergenic |
| CTTCCACGTTCTTACGGCCG+CGG | 0.500469 | 2_3:+40324606 | Msa0291650:three_prime_UTR |
| AATTTGTGAGGTTCATCAGC+TGG | 0.500821 | 2_3:-40320683 | None:intergenic |
| TTCCACGTTCTTACGGCCGC+GGG | 0.509288 | 2_3:+40324607 | Msa0291650:three_prime_UTR |
| TCACTCGAAATAAACTTTGA+CGG | 0.513514 | 2_3:+40324560 | Msa0291650:three_prime_UTR |
| AAAATGTCACATTTGATCTA+CGG | 0.519282 | 2_3:+40324519 | Msa0291650:three_prime_UTR |
| AGAGTAAGGGATCCTGTGTA+TGG | 0.521523 | 2_3:+40324218 | Msa0291650:CDS |
| ATAAACTTTGACGGCACCGA+TGG | 0.523973 | 2_3:+40324569 | Msa0291650:three_prime_UTR |
| CAAATTTGGCAGTGTCCACA+AGG | 0.525604 | 2_3:+40320700 | Msa0291650:CDS |
| AAGTGATGCAGTTAGTTCAA+TGG | 0.533555 | 2_3:+40324178 | Msa0291650:CDS |
| CGTAAGAACGTGGAAGACCT+TGG | 0.560382 | 2_3:-40324599 | None:intergenic |
| TGAAGCAAATGCAAGAGTAA+GGG | 0.570272 | 2_3:+40324205 | Msa0291650:CDS |
| AAAATGTGTACCAATCAAGC+AGG | 0.584103 | 2_3:+40324390 | Msa0291650:CDS |
| AATTGGAGGAACATGAAGGA+TGG | 0.589346 | 2_3:+40320569 | None:intergenic |
| AGAAGCTTGCATGCAGCACA+TGG | 0.590179 | 2_3:-40320617 | None:intergenic |
| CTCCCGCGGCCGTAAGAACG+TGG | 0.591092 | 2_3:-40324609 | None:intergenic |
| GGATCCTGTGTATGGATGTG+TGG | 0.591101 | 2_3:+40324226 | Msa0291650:CDS |
| TGGAGGAACATGAAGGATGG+TGG | 0.593577 | 2_3:+40320572 | None:intergenic |
| GCACCGATGGTATATTGCCA+AGG | 0.625221 | 2_3:+40324582 | Msa0291650:three_prime_UTR |
| AAGGATGGTGGTAGAAAACA+AGG | 0.626109 | 2_3:+40320584 | Msa0291650:CDS |
| AGCTAGCTAGTAAGACCACA+AGG | 0.627089 | 2_3:-40324444 | None:intergenic |
| GATCCTGTGTATGGATGTGT+GGG | 0.634230 | 2_3:+40324227 | Msa0291650:CDS |
| AGACCTTGGCAATATACCAT+CGG | 0.638285 | 2_3:-40324585 | None:intergenic |
| ATTAGCTCAAGCACAAGCAG+AGG | 0.647477 | 2_3:+40324295 | Msa0291650:CDS |
| TGGACACTGCCAAATTTGTG+AGG | 0.657276 | 2_3:-40320695 | None:intergenic |
| GATGGTGGTGACGAATTCGA+TGG | 0.671990 | 2_3:-40324365 | None:intergenic |
| ATCTACTTGTTGCTGCAGAG+AGG | 0.672706 | 2_3:-40324258 | None:intergenic |
| ACAAAATGGGACAATCCTTG+TGG | 0.674959 | 2_3:+40324429 | Msa0291650:CDS |
| GGTGGTGACGAATTCGATGG+TGG | 0.676502 | 2_3:-40324362 | None:intergenic |
| GCTCCCACACATCCATACAC+AGG | 0.680929 | 2_3:-40324230 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAATAAATTAATTA+AGG | - | chr2_3:40321283-40321302 | None:intergenic | 0.0% |
| !!! | ATTTTTAATTTTTTAAAAAT+TGG | + | chr2_3:40323463-40323482 | Msa0291650:intron | 0.0% |
| !! | TAATTAAAAAAAGAGTTATT+AGG | + | chr2_3:40321063-40321082 | Msa0291650:intron | 10.0% |
| !! | AATTAAAAAAAGAGTTATTA+GGG | + | chr2_3:40321064-40321083 | Msa0291650:intron | 10.0% |
| !!! | AAACATTAAAAATATTTTGT+TGG | - | chr2_3:40322169-40322188 | None:intergenic | 10.0% |
| !!! | TAAAGTTTTAGTATATTATA+TGG | + | chr2_3:40322911-40322930 | Msa0291650:intron | 10.0% |
| !!! | ATTTAAGTTAATTTATTAAG+AGG | + | chr2_3:40323645-40323664 | Msa0291650:intron | 10.0% |
| !!! | TGTAATTTTGACATTTTTAT+CGG | - | chr2_3:40321361-40321380 | None:intergenic | 15.0% |
| !! | ATAAAAATGTCAAAATTACA+AGG | + | chr2_3:40321361-40321380 | Msa0291650:intron | 15.0% |
| !! | ATTGAATATAATTGAATGAT+GGG | + | chr2_3:40322055-40322074 | Msa0291650:intron | 15.0% |
| !!! | GTATTTTATATGGTATAATT+TGG | + | chr2_3:40323190-40323209 | Msa0291650:intron | 15.0% |
| !!! | ACATCAAATTTCAAATTTTA+AGG | - | chr2_3:40323972-40323991 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTATGACCAAGT+CGG | + | chr2_3:40320849-40320868 | Msa0291650:intron | 20.0% |
| !!! | AATGACACATTTTAATAACA+CGG | + | chr2_3:40321568-40321587 | Msa0291650:intron | 20.0% |
| !! | AATTTCATCCAATAAAAATC+AGG | + | chr2_3:40321622-40321641 | Msa0291650:intron | 20.0% |
| !! | ATTTCATCCAATAAAAATCA+GGG | + | chr2_3:40321623-40321642 | Msa0291650:intron | 20.0% |
| !!! | ATTTTACAAGTTACTTTGTA+GGG | + | chr2_3:40321791-40321810 | Msa0291650:intron | 20.0% |
| !! | CTAATTTCAGAAAATATGTT+TGG | + | chr2_3:40321938-40321957 | Msa0291650:intron | 20.0% |
| !! | CATTGAATATAATTGAATGA+TGG | + | chr2_3:40322054-40322073 | Msa0291650:intron | 20.0% |
| !! | TTTCTCTCATATAATTTATG+TGG | + | chr2_3:40322379-40322398 | Msa0291650:intron | 20.0% |
| !! | TCATTTAATTAACTTCATCA+TGG | + | chr2_3:40322404-40322423 | Msa0291650:intron | 20.0% |
| !! | CATTATATATAAGAACTGTA+GGG | - | chr2_3:40322577-40322596 | None:intergenic | 20.0% |
| !! | TCATTATATATAAGAACTGT+AGG | - | chr2_3:40322578-40322597 | None:intergenic | 20.0% |
| !! | CAATGATGACATATATATAT+TGG | + | chr2_3:40323086-40323105 | Msa0291650:intron | 20.0% |
| !! | ATATAAAATACAACCCTAAA+GGG | - | chr2_3:40323181-40323200 | None:intergenic | 20.0% |
| !!! | AAGTTGGTTATTTTTGAAAA+GGG | - | chr2_3:40323328-40323347 | None:intergenic | 20.0% |
| !!! | TTTTAAAAATTGGTACCATT+AGG | + | chr2_3:40323473-40323492 | Msa0291650:intron | 20.0% |
| !! | ATTATAGTACTTATACCTAA+TGG | - | chr2_3:40323491-40323510 | None:intergenic | 20.0% |
| !!! | TAAGTACTATAATTGATTTG+AGG | + | chr2_3:40323498-40323517 | Msa0291650:intron | 20.0% |
| !!! | AAGTACTATAATTGATTTGA+GGG | + | chr2_3:40323499-40323518 | Msa0291650:intron | 20.0% |
| !! | TAAGTTAATTTATTAAGAGG+AGG | + | chr2_3:40323648-40323667 | Msa0291650:intron | 20.0% |
| !! | CATAGTCAAATAGTATATAT+GGG | - | chr2_3:40323745-40323764 | None:intergenic | 20.0% |
| !! | TATTAACCCTAAACTTAATT+CGG | - | chr2_3:40323813-40323832 | None:intergenic | 20.0% |
| !!! | TTTCAAGATTCTTTGATTTT+TGG | + | chr2_3:40323864-40323883 | Msa0291650:intron | 20.0% |
| !! | GCTTATACATATAAACTTAA+AGG | - | chr2_3:40324108-40324127 | None:intergenic | 20.0% |
| ! | CAATGTAAACAAAATGTTAC+AGG | + | chr2_3:40320736-40320755 | Msa0291650:CDS | 25.0% |
| ! | TGATAGAGATATGAAAGATT+AGG | - | chr2_3:40320781-40320800 | None:intergenic | 25.0% |
| ! | AAAATTCTCATGAAAACGAT+TGG | - | chr2_3:40320822-40320841 | None:intergenic | 25.0% |
| !!! | TTTTCATATTCTAAGACAAG+TGG | + | chr2_3:40321022-40321041 | Msa0291650:intron | 25.0% |
| ! | AAATGATCTTATATAGACGA+AGG | + | chr2_3:40321136-40321155 | Msa0291650:intron | 25.0% |
| ! | AATGATCTTATATAGACGAA+GGG | + | chr2_3:40321137-40321156 | Msa0291650:intron | 25.0% |
| ! | AGGTTTCACATAAACATATT+AGG | - | chr2_3:40321189-40321208 | None:intergenic | 25.0% |
| ! | TATAATCAGATGAAAGAAGT+AGG | - | chr2_3:40321209-40321228 | None:intergenic | 25.0% |
| ! | AAATGTCAAAATTACAAGGT+CGG | + | chr2_3:40321365-40321384 | Msa0291650:intron | 25.0% |
| ! | TAAAAATTGACACACAAATG+TGG | - | chr2_3:40321423-40321442 | None:intergenic | 25.0% |
| !! | ACAAAGTAACTTGTAAAATG+CGG | - | chr2_3:40321790-40321809 | None:intergenic | 25.0% |
| !!! | CATTTTACAAGTTACTTTGT+AGG | + | chr2_3:40321790-40321809 | Msa0291650:intron | 25.0% |
| !!! | TTTTACAAGTTACTTTGTAG+GGG | + | chr2_3:40321792-40321811 | Msa0291650:intron | 25.0% |
| ! | TAATATTTGTACCAAAACCA+GGG | + | chr2_3:40321840-40321859 | Msa0291650:intron | 25.0% |
| !! | TTTGGTACCTGAAATTTTAT+TGG | + | chr2_3:40321956-40321975 | Msa0291650:intron | 25.0% |
| ! | CTTCTATCCAATAAAATTTC+AGG | - | chr2_3:40321966-40321985 | None:intergenic | 25.0% |
| !! | AATATAATTGAATGATGGGA+TGG | + | chr2_3:40322059-40322078 | Msa0291650:intron | 25.0% |
| ! | TTGTTGGATGAGAAAAAAAA+GGG | - | chr2_3:40322153-40322172 | None:intergenic | 25.0% |
| ! | TTTGTTGGATGAGAAAAAAA+AGG | - | chr2_3:40322154-40322173 | None:intergenic | 25.0% |
| ! | GAACTAGTCAAGTAAATTTA+CGG | - | chr2_3:40322253-40322272 | None:intergenic | 25.0% |
| ! | AGTGTTCAAGAAAAGTTAAA+AGG | + | chr2_3:40322483-40322502 | Msa0291650:intron | 25.0% |
| !! | ATTAACTTGATCTGTTATAG+TGG | + | chr2_3:40322530-40322549 | Msa0291650:intron | 25.0% |
| ! | TATCTTTGTTAAAGCAACTA+AGG | + | chr2_3:40322605-40322624 | Msa0291650:intron | 25.0% |
| ! | AGAGATATTGTTGAACAAAT+TGG | - | chr2_3:40322823-40322842 | None:intergenic | 25.0% |
| !! | TTCTCTTGCAATGATATTTT+AGG | + | chr2_3:40322881-40322900 | Msa0291650:intron | 25.0% |
| !! | TCTCTTGCAATGATATTTTA+GGG | + | chr2_3:40322882-40322901 | Msa0291650:intron | 25.0% |
| !! | ATTCTAAAGACAAAAGGAAA+AGG | - | chr2_3:40322940-40322959 | None:intergenic | 25.0% |
| !! | TCTCTTTTGGACATATTATA+AGG | - | chr2_3:40322985-40323004 | None:intergenic | 25.0% |
| ! | GGGAGAAAAAAAAATTAAAG+TGG | - | chr2_3:40323126-40323145 | None:intergenic | 25.0% |
| ! | CATATAAAATACAACCCTAA+AGG | - | chr2_3:40323182-40323201 | None:intergenic | 25.0% |
| !!! | CTTTAGGGTTGTATTTTATA+TGG | + | chr2_3:40323180-40323199 | Msa0291650:intron | 25.0% |
| ! | ACTAGTATATATTTAGTCAC+TGG | + | chr2_3:40323277-40323296 | Msa0291650:intron | 25.0% |
| ! | CTAGTATATATTTAGTCACT+GGG | + | chr2_3:40323278-40323297 | Msa0291650:intron | 25.0% |
| !!! | AGTTGGTTATTTTTGAAAAG+GGG | - | chr2_3:40323327-40323346 | None:intergenic | 25.0% |
| !!! | GAAGTTGGTTATTTTTGAAA+AGG | - | chr2_3:40323329-40323348 | None:intergenic | 25.0% |
| !!! | AGTACTATAATTGATTTGAG+GGG | + | chr2_3:40323500-40323519 | Msa0291650:intron | 25.0% |
| ! | TTATGCAGAAGTTTCATATT+TGG | - | chr2_3:40323703-40323722 | None:intergenic | 25.0% |
| ! | TCAAATAGTATATATGGGTT+TGG | - | chr2_3:40323740-40323759 | None:intergenic | 25.0% |
| ! | GCATAGTCAAATAGTATATA+TGG | - | chr2_3:40323746-40323765 | None:intergenic | 25.0% |
| ! | TATACTATTTGACTATGCAT+TGG | + | chr2_3:40323748-40323767 | Msa0291650:intron | 25.0% |
| ! | ATAGTAACCGAATTAAGTTT+AGG | + | chr2_3:40323803-40323822 | Msa0291650:intron | 25.0% |
| ! | TAGTAACCGAATTAAGTTTA+GGG | + | chr2_3:40323804-40323823 | Msa0291650:intron | 25.0% |
| ! | TAAGCGACATTCTAATTATT+TGG | + | chr2_3:40324123-40324142 | Msa0291650:intron | 25.0% |
| ! | TTCTAATTATTTGGTCCAAT+TGG | + | chr2_3:40324132-40324151 | Msa0291650:intron | 25.0% |
| !! | TTTTCTTCACCAAACAAAAT+GGG | + | chr2_3:40324416-40324435 | Msa0291650:CDS | 25.0% |
| ! | AAAATGTCACATTTGATCTA+CGG | + | chr2_3:40324519-40324538 | Msa0291650:three_prime_UTR | 25.0% |
| ATGAAAACGATTGGAATATC+AGG | - | chr2_3:40320813-40320832 | None:intergenic | 30.0% | |
| ! | TCGTTTTCATGAGAATTTTG+TGG | + | chr2_3:40320823-40320842 | Msa0291650:intron | 30.0% |
| ! | TTTAATAACAAATGCCGACT+TGG | - | chr2_3:40320866-40320885 | None:intergenic | 30.0% |
| ! | AAGGGTCTTATATATAGAGA+CGG | + | chr2_3:40320952-40320971 | Msa0291650:intron | 30.0% |
| !!! | TGTGACTAGTTTTAAGAAAC+TGG | - | chr2_3:40321543-40321562 | None:intergenic | 30.0% |
| !! | ACACATTTTAATAACACGGA+GGG | + | chr2_3:40321572-40321591 | Msa0291650:intron | 30.0% |
| ! | TTTAACGCCCTGATTTTTAT+TGG | - | chr2_3:40321633-40321652 | None:intergenic | 30.0% |
| !!! | CTTCTCTACGTTTTTTTCTT+GGG | - | chr2_3:40321693-40321712 | None:intergenic | 30.0% |
| !!! | TCTTCTCTACGTTTTTTTCT+TGG | - | chr2_3:40321694-40321713 | None:intergenic | 30.0% |
| CTAATATTTGTACCAAAACC+AGG | + | chr2_3:40321839-40321858 | Msa0291650:intron | 30.0% | |
| TTAATAACCATATGCATGAG+TGG | + | chr2_3:40321901-40321920 | Msa0291650:intron | 30.0% | |
| AATTATACCACTCATGCATA+TGG | - | chr2_3:40321911-40321930 | None:intergenic | 30.0% | |
| TATGCATGAGTGGTATAATT+AGG | + | chr2_3:40321911-40321930 | Msa0291650:intron | 30.0% | |
| !! | GGTTAGTTACAGTTGATAAT+TGG | + | chr2_3:40322551-40322570 | Msa0291650:intron | 30.0% |
| TTAGCACAAAAAAAAGACCA+AGG | + | chr2_3:40322678-40322697 | Msa0291650:intron | 30.0% | |
| ! | AGTGTGTTTTCATGTAGTAA+AGG | - | chr2_3:40322723-40322742 | None:intergenic | 30.0% |
| ACACTAAGTGTGAATTTAAG+AGG | + | chr2_3:40322738-40322757 | Msa0291650:intron | 30.0% | |
| !!! | TTCCTTTTGTCTTTAGAATC+AGG | + | chr2_3:40322941-40322960 | Msa0291650:intron | 30.0% |
| !!! | TCCTTTTGTCTTTAGAATCA+GGG | + | chr2_3:40322942-40322961 | Msa0291650:intron | 30.0% |
| ! | TGTGATATCAACATCTCTTT+TGG | - | chr2_3:40322998-40323017 | None:intergenic | 30.0% |
| ! | TAAAGGGTTTGATAACAGAA+AGG | - | chr2_3:40323165-40323184 | None:intergenic | 30.0% |
| TTTCTGTTATCAAACCCTTT+AGG | + | chr2_3:40323164-40323183 | Msa0291650:intron | 30.0% | |
| TTCTGTTATCAAACCCTTTA+GGG | + | chr2_3:40323165-40323184 | Msa0291650:intron | 30.0% | |
| !!! | TTATTTTTGAAAAGGGGTGA+TGG | - | chr2_3:40323321-40323340 | None:intergenic | 30.0% |
| TTGAAATCTGTAAGTAGTTG+TGG | - | chr2_3:40323402-40323421 | None:intergenic | 30.0% | |
| GAATCTTGAAATTGCAAGAT+TGG | - | chr2_3:40323855-40323874 | None:intergenic | 30.0% | |
| TACAACATCGATGATATAGT+AGG | + | chr2_3:40323907-40323926 | Msa0291650:intron | 30.0% | |
| ACAACATCGATGATATAGTA+GGG | + | chr2_3:40323908-40323927 | Msa0291650:intron | 30.0% | |
| !! | ATTTGAAGGTTCTTTGGTTT+TGG | - | chr2_3:40324004-40324023 | None:intergenic | 30.0% |
| ! | CTTTTCTTCACCAAACAAAA+TGG | + | chr2_3:40324415-40324434 | Msa0291650:CDS | 30.0% |
| TCACTCGAAATAAACTTTGA+CGG | + | chr2_3:40324560-40324579 | Msa0291650:three_prime_UTR | 30.0% | |
| !! | ATTCCCGTGATTTTAGCAAA+AGG | + | chr2_3:40320933-40320952 | Msa0291650:intron | 35.0% |
| !! | TTCCCGTGATTTTAGCAAAA+GGG | + | chr2_3:40320934-40320953 | Msa0291650:intron | 35.0% |
| ! | AGACCCTTTTGCTAAAATCA+CGG | - | chr2_3:40320940-40320959 | None:intergenic | 35.0% |
| AAATTGACACACAAATGTGG+AGG | - | chr2_3:40321420-40321439 | None:intergenic | 35.0% | |
| !! | GACACATTTTAATAACACGG+AGG | + | chr2_3:40321571-40321590 | Msa0291650:intron | 35.0% |
| AGTTGTAAGTGTCATCTTGT+TGG | + | chr2_3:40321716-40321735 | Msa0291650:intron | 35.0% | |
| TAAGTGTCATCTTGTTGGAT+AGG | + | chr2_3:40321721-40321740 | Msa0291650:intron | 35.0% | |
| ! | TGCGGATTAATACTAAAGCT+GGG | - | chr2_3:40321772-40321791 | None:intergenic | 35.0% |
| ! | ATGCGGATTAATACTAAAGC+TGG | - | chr2_3:40321773-40321792 | None:intergenic | 35.0% |
| ACCAAAACCAGGGTATAATT+AGG | + | chr2_3:40321850-40321869 | Msa0291650:intron | 35.0% | |
| ! | ACCTAATTATACCCTGGTTT+TGG | - | chr2_3:40321854-40321873 | None:intergenic | 35.0% |
| CCTTATACCTAATTATACCC+TGG | - | chr2_3:40321860-40321879 | None:intergenic | 35.0% | |
| CCAGGGTATAATTAGGTATA+AGG | + | chr2_3:40321857-40321876 | Msa0291650:intron | 35.0% | |
| CAAAAAAAAGACCAAGGATC+AGG | + | chr2_3:40322684-40322703 | Msa0291650:intron | 35.0% | |
| ATTTATATGCACCTGATCCT+TGG | - | chr2_3:40322698-40322717 | None:intergenic | 35.0% | |
| ATTGTTAGCTGCATCATTAC+TGG | + | chr2_3:40322784-40322803 | Msa0291650:intron | 35.0% | |
| ! | ACCCTGATTCTAAAGACAAA+AGG | - | chr2_3:40322946-40322965 | None:intergenic | 35.0% |
| TCTGTAAGTAGTTGTGGATA+TGG | - | chr2_3:40323396-40323415 | None:intergenic | 35.0% | |
| ! | CTCCATTTAAAGCCATAACA+AGG | + | chr2_3:40323550-40323569 | Msa0291650:intron | 35.0% |
| !! | AGCCTTGTTATGGCTTTAAA+TGG | - | chr2_3:40323555-40323574 | None:intergenic | 35.0% |
| !! | TGTCATACAAAGCCTTGTTA+TGG | - | chr2_3:40323565-40323584 | None:intergenic | 35.0% |
| TATGACAAGTCAACCCAAAT+TGG | + | chr2_3:40323578-40323597 | Msa0291650:intron | 35.0% | |
| CAACATCGATGATATAGTAG+GGG | + | chr2_3:40323909-40323928 | Msa0291650:intron | 35.0% | |
| CAAAGAACCTTCAAATGACA+GGG | + | chr2_3:40324008-40324027 | Msa0291650:intron | 35.0% | |
| ! | ATTTGAACCCTGTCATTTGA+AGG | - | chr2_3:40324018-40324037 | None:intergenic | 35.0% |
| GTTTACTCCTGTTATATTCG+CGG | - | chr2_3:40324076-40324095 | None:intergenic | 35.0% | |
| AATTATTTGGTCCAATTGGC+AGG | + | chr2_3:40324136-40324155 | Msa0291650:intron | 35.0% | |
| AAGTGATGCAGTTAGTTCAA+TGG | + | chr2_3:40324178-40324197 | Msa0291650:CDS | 35.0% | |
| ATGAAGCAAATGCAAGAGTA+AGG | + | chr2_3:40324204-40324223 | Msa0291650:CDS | 35.0% | |
| TGAAGCAAATGCAAGAGTAA+GGG | + | chr2_3:40324205-40324224 | Msa0291650:CDS | 35.0% | |
| GATGATGATCAGATGAGAAT+TGG | - | chr2_3:40324340-40324359 | None:intergenic | 35.0% | |
| ! | GATTGGTACACATTTTCTGA+TGG | - | chr2_3:40324386-40324405 | None:intergenic | 35.0% |
| AAAATGTGTACCAATCAAGC+AGG | + | chr2_3:40324390-40324409 | Msa0291650:CDS | 35.0% | |
| AAGAAAAGAACCTGCTTGAT+TGG | - | chr2_3:40324403-40324422 | None:intergenic | 35.0% | |
| ! | AAGGATTGTCCCATTTTGTT+TGG | - | chr2_3:40324428-40324447 | None:intergenic | 35.0% |
| TAGTGTAAAAAGCCATTGCT+AGG | + | chr2_3:40324491-40324510 | Msa0291650:three_prime_UTR | 35.0% | |
| AGTGTAAAAAGCCATTGCTA+GGG | + | chr2_3:40324492-40324511 | Msa0291650:three_prime_UTR | 35.0% | |
| !! | ACATTTTTCAACCCTAGCAA+TGG | - | chr2_3:40324506-40324525 | None:intergenic | 35.0% |
| !!! | TTCGAGTGATTTTCAAGTGT+CGG | - | chr2_3:40324549-40324568 | None:intergenic | 35.0% |
| ! | AAGGATGGTGGTAGAAAACA+AGG | + | chr2_3:40320584-40320603 | Msa0291650:CDS | 40.0% |
| GGTTCATCAGCTGGAAAATA+TGG | - | chr2_3:40320677-40320696 | None:intergenic | 40.0% | |
| AATTTGTGAGGTTCATCAGC+TGG | - | chr2_3:40320686-40320705 | None:intergenic | 40.0% | |
| GCTGATGAACCTCACAAATT+TGG | + | chr2_3:40320686-40320705 | Msa0291650:CDS | 40.0% | |
| ! | GACCCTTTTGCTAAAATCAC+GGG | - | chr2_3:40320939-40320958 | None:intergenic | 40.0% |
| ! | GGTCTTATATATAGAGACGG+AGG | + | chr2_3:40320955-40320974 | Msa0291650:intron | 40.0% |
| TGTGACTACGGTTTGAACTT+CGG | + | chr2_3:40321392-40321411 | Msa0291650:intron | 40.0% | |
| ACAGAAAGGAGGATAACTGA+GGG | - | chr2_3:40323151-40323170 | None:intergenic | 40.0% | |
| AACAGAAAGGAGGATAACTG+AGG | - | chr2_3:40323152-40323171 | None:intergenic | 40.0% | |
| ! | AGGGTTTGATAACAGAAAGG+AGG | - | chr2_3:40323162-40323181 | None:intergenic | 40.0% |
| GATAACGTAGATGCTGAAGT+TGG | - | chr2_3:40323344-40323363 | None:intergenic | 40.0% | |
| !! | GTCTCCTTTTGACTATGCAT+GGG | + | chr2_3:40323364-40323383 | Msa0291650:intron | 40.0% |
| AGATCCCATGCATAGTCAAA+AGG | - | chr2_3:40323371-40323390 | None:intergenic | 40.0% | |
| !! | TTTTGACTATGCATGGGATC+TGG | + | chr2_3:40323370-40323389 | Msa0291650:intron | 40.0% |
| ! | AGATCTTACGGTGCCAATTT+GGG | - | chr2_3:40323594-40323613 | None:intergenic | 40.0% |
| ATCCACTCAAGTTAACACGA+TGG | - | chr2_3:40323627-40323646 | None:intergenic | 40.0% | |
| TATATGGGTTTGGACACACA+AGG | - | chr2_3:40323730-40323749 | None:intergenic | 40.0% | |
| ACCGAATTCGCTCAAATTAC+AGG | + | chr2_3:40323936-40323955 | Msa0291650:intron | 40.0% | |
| CCCTGTAATTTGAGCGAATT+CGG | - | chr2_3:40323940-40323959 | None:intergenic | 40.0% | |
| CCGAATTCGCTCAAATTACA+GGG | + | chr2_3:40323937-40323956 | Msa0291650:intron | 40.0% | |
| CGAATTCGCTCAAATTACAG+GGG | + | chr2_3:40323938-40323957 | Msa0291650:intron | 40.0% | |
| ! | CCTGTCATTTGAAGGTTCTT+TGG | - | chr2_3:40324010-40324029 | None:intergenic | 40.0% |
| CCAAAGAACCTTCAAATGAC+AGG | + | chr2_3:40324007-40324026 | Msa0291650:intron | 40.0% | |
| ! | CCTGTTATATTCGCGGTTTT+TGG | - | chr2_3:40324069-40324088 | None:intergenic | 40.0% |
| CCAAAAACCGCGAATATAAC+AGG | + | chr2_3:40324066-40324085 | Msa0291650:intron | 40.0% | |
| TGCTTGTGCTTGAGCTAATT+GGG | - | chr2_3:40324294-40324313 | None:intergenic | 40.0% | |
| ! | TGGTACACATTTTCTGATGG+TGG | - | chr2_3:40324383-40324402 | None:intergenic | 40.0% |
| ACAAAATGGGACAATCCTTG+TGG | + | chr2_3:40324429-40324448 | Msa0291650:CDS | 40.0% | |
| AGACCTTGGCAATATACCAT+CGG | - | chr2_3:40324588-40324607 | None:intergenic | 40.0% | |
| CTGCATGCAAGCTTCTTAGA+AGG | + | chr2_3:40320624-40320643 | Msa0291650:CDS | 45.0% | |
| TGGACACTGCCAAATTTGTG+AGG | - | chr2_3:40320698-40320717 | None:intergenic | 45.0% | |
| CAAATTTGGCAGTGTCCACA+AGG | + | chr2_3:40320700-40320719 | Msa0291650:CDS | 45.0% | |
| ! | GCAGTGTCCACAAGGTTTTT+GGG | + | chr2_3:40320708-40320727 | Msa0291650:CDS | 45.0% |
| ! | CAGTGTCCACAAGGTTTTTG+GGG | + | chr2_3:40320709-40320728 | Msa0291650:CDS | 45.0% |
| ! | ACGGAGGGAGTACATGATTT+AGG | + | chr2_3:40321587-40321606 | Msa0291650:intron | 45.0% |
| GTTAGCTGCATCATTACTGG+TGG | + | chr2_3:40322787-40322806 | Msa0291650:intron | 45.0% | |
| CTTTATGACCAACGCATGCA+TGG | + | chr2_3:40322843-40322862 | Msa0291650:intron | 45.0% | |
| ATGAAAAGCCATGCATGCGT+TGG | - | chr2_3:40322854-40322873 | None:intergenic | 45.0% | |
| ! | GCATGCATGGCTTTTCATCT+TGG | + | chr2_3:40322856-40322875 | Msa0291650:intron | 45.0% |
| AAAGGAGGATAACTGAGGGA+GGG | - | chr2_3:40323147-40323166 | None:intergenic | 45.0% | |
| !! | CGTCTCCTTTTGACTATGCA+TGG | + | chr2_3:40323363-40323382 | Msa0291650:intron | 45.0% |
| ! | GAGATCTTACGGTGCCAATT+TGG | - | chr2_3:40323595-40323614 | None:intergenic | 45.0% |
| !! | GGTGCTGGTTTGAGATCTTA+CGG | - | chr2_3:40323606-40323625 | None:intergenic | 45.0% |
| TCAAGTTAACACGATGGTGC+TGG | - | chr2_3:40323621-40323640 | None:intergenic | 45.0% | |
| ! | CACCATCGTGTTAACTTGAG+TGG | + | chr2_3:40323622-40323641 | Msa0291650:intron | 45.0% |
| TTCTGGTAGTTCCTGCCAAT+TGG | - | chr2_3:40324150-40324169 | None:intergenic | 45.0% | |
| GCATCACTTCGTTGATGTTC+TGG | - | chr2_3:40324167-40324186 | None:intergenic | 45.0% | |
| AGAGTAAGGGATCCTGTGTA+TGG | + | chr2_3:40324218-40324237 | Msa0291650:CDS | 45.0% | |
| GATCCTGTGTATGGATGTGT+GGG | + | chr2_3:40324227-40324246 | Msa0291650:CDS | 45.0% | |
| ! | ATCTACTTGTTGCTGCAGAG+AGG | - | chr2_3:40324261-40324280 | None:intergenic | 45.0% |
| CTGCTTGTGCTTGAGCTAAT+TGG | - | chr2_3:40324295-40324314 | None:intergenic | 45.0% | |
| ATTAGCTCAAGCACAAGCAG+AGG | + | chr2_3:40324295-40324314 | Msa0291650:CDS | 45.0% | |
| AGCTAGCTAGTAAGACCACA+AGG | - | chr2_3:40324447-40324466 | None:intergenic | 45.0% | |
| ! | ATAAACTTTGACGGCACCGA+TGG | + | chr2_3:40324569-40324588 | Msa0291650:three_prime_UTR | 45.0% |
| CAAGGTCTTCCACGTTCTTA+CGG | + | chr2_3:40324600-40324619 | Msa0291650:three_prime_UTR | 45.0% | |
| AGAAGCTTGCATGCAGCACA+TGG | - | chr2_3:40320620-40320639 | None:intergenic | 50.0% | |
| ! | GGCAGTGTCCACAAGGTTTT+TGG | + | chr2_3:40320707-40320726 | Msa0291650:CDS | 50.0% |
| TGCTAGCCCCAAAAACCTTG+TGG | - | chr2_3:40320718-40320737 | None:intergenic | 50.0% | |
| AAGGTCGGACGATGTGACTA+CGG | + | chr2_3:40321380-40321399 | Msa0291650:intron | 50.0% | |
| AAGGAGGATAACTGAGGGAG+GGG | - | chr2_3:40323146-40323165 | None:intergenic | 50.0% | |
| GAAAGGAGGATAACTGAGGG+AGG | - | chr2_3:40323148-40323167 | None:intergenic | 50.0% | |
| TTAAATGGAGTCCCCGCAAG+TGG | - | chr2_3:40323540-40323559 | None:intergenic | 50.0% | |
| GGATCCTGTGTATGGATGTG+TGG | + | chr2_3:40324226-40324245 | Msa0291650:CDS | 50.0% | |
| ! | GATGGTGGTGACGAATTCGA+TGG | - | chr2_3:40324368-40324387 | None:intergenic | 50.0% |
| ! | GCACCGATGGTATATTGCCA+AGG | + | chr2_3:40324582-40324601 | Msa0291650:three_prime_UTR | 50.0% |
| CGTAAGAACGTGGAAGACCT+TGG | - | chr2_3:40324602-40324621 | None:intergenic | 50.0% | |
| GCTCCCACACATCCATACAC+AGG | - | chr2_3:40324233-40324252 | None:intergenic | 55.0% | |
| ! | GGTGGTGACGAATTCGATGG+TGG | - | chr2_3:40324365-40324384 | None:intergenic | 55.0% |
| CTGACCTCTCCGTCCACTTG+CGG | + | chr2_3:40323524-40323543 | Msa0291650:intron | 60.0% | |
| TGACCTCTCCGTCCACTTGC+GGG | + | chr2_3:40323525-40323544 | Msa0291650:intron | 60.0% | |
| ATGGAGTCCCCGCAAGTGGA+CGG | - | chr2_3:40323536-40323555 | None:intergenic | 60.0% | |
| GACCTCTCCGTCCACTTGCG+GGG | + | chr2_3:40323526-40323545 | Msa0291650:intron | 65.0% | |
| GTCCCCGCAAGTGGACGGAG+AGG | - | chr2_3:40323531-40323550 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 40320573 | 40324628 | 40320573 | ID=Msa0291650;Name=Msa0291650 |
| chr2_3 | mRNA | 40320573 | 40324628 | 40320573 | ID=Msa0291650-mRNA-1;Parent=Msa0291650;Name=Msa0291650-mRNA-1;_AED=0.11;_eAED=0.11;_QI=8|1|1|1|1|1|2|168|159 |
| chr2_3 | exon | 40320573 | 40320757 | 40320573 | ID=Msa0291650-mRNA-1:exon:12947;Parent=Msa0291650-mRNA-1 |
| chr2_3 | exon | 40324158 | 40324628 | 40324158 | ID=Msa0291650-mRNA-1:exon:12948;Parent=Msa0291650-mRNA-1 |
| chr2_3 | five_prime_UTR | 40320573 | 40320580 | 40320573 | ID=Msa0291650-mRNA-1:five_prime_utr;Parent=Msa0291650-mRNA-1 |
| chr2_3 | CDS | 40320581 | 40320757 | 40320581 | ID=Msa0291650-mRNA-1:cds;Parent=Msa0291650-mRNA-1 |
| chr2_3 | CDS | 40324158 | 40324460 | 40324158 | ID=Msa0291650-mRNA-1:cds;Parent=Msa0291650-mRNA-1 |
| chr2_3 | three_prime_UTR | 40324461 | 40324628 | 40324461 | ID=Msa0291650-mRNA-1:three_prime_utr;Parent=Msa0291650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
