AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0255210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0255210 MtrunA17_Chr2g0315841 84.862 436 59 1 1 429 1 436 0.0 758
Msa0255210 MtrunA17_Chr2g0315841 77.130 223 46 3 429 648 216 436 5.76e-118 358
Msa0255210 MtrunA17_Chr2g0315851 83.562 438 63 2 1 429 1 438 0.0 728
Msa0255210 MtrunA17_Chr2g0315851 70.815 233 59 5 423 648 208 438 6.41e-106 328
Msa0255210 MtrunA17_Chr2g0315861 88.095 168 19 1 213 380 5 171 1.64e-101 306
Msa0255210 MtrunA17_Chr2g0315861 70.000 170 47 2 430 597 2 169 1.56e-78 247
Msa0255210 MtrunA17_Chr2g0315871 62.500 264 72 5 33 287 2 247 1.92e-100 308
Msa0255210 MtrunA17_Chr2g0315871 73.418 79 21 0 429 507 169 247 3.17e-33 129
Msa0255210 MtrunA17_Chr1g0149381 24.854 342 234 9 91 426 90 414 4.15e-22 101
Msa0255210 MtrunA17_Chr3g0106121 27.543 403 248 16 62 438 41 425 5.10e-21 98.2
Msa0255210 MtrunA17_Chr7g0244431 28.000 325 204 11 112 427 101 404 2.64e-20 94.4
Msa0255210 MtrunA17_Chr7g0237331 27.949 390 235 15 63 427 51 419 8.96e-20 94.0
Msa0255210 MtrunA17_Chr3g0106151 27.979 386 236 17 62 427 44 407 8.36e-19 90.9
Msa0255210 MtrunA17_Chr2g0323301 29.101 378 197 20 93 426 77 427 1.08e-18 90.5
Msa0255210 MtrunA17_Chr3g0134291 29.014 355 206 19 63 391 48 382 1.09e-18 90.5
Msa0255210 MtrunA17_Chr3g0106131 26.531 392 246 14 62 429 41 414 1.21e-18 90.5
Msa0255210 MtrunA17_Chr3g0137741 24.011 379 252 13 60 426 57 411 1.39e-18 90.1
Msa0255210 MtrunA17_Chr0c04g0492001 29.014 355 206 19 63 391 48 382 1.69e-18 90.1
Msa0255210 MtrunA17_Chr0c04g0492031 29.014 355 206 19 63 391 48 382 1.75e-18 90.1
Msa0255210 MtrunA17_Chr3g0134321 40.000 160 85 6 63 214 45 201 3.85e-18 88.6
Msa0255210 MtrunA17_Chr7g0257821 28.532 361 208 20 63 403 51 381 7.31e-18 87.8
Msa0255210 MtrunA17_Chr4g0023071 28.158 380 202 21 92 426 76 429 1.04e-17 87.4
Msa0255210 MtrunA17_Chr3g0106141 28.969 359 211 15 62 396 41 379 1.44e-17 87.0
Msa0255210 MtrunA17_Chr3g0106211 27.072 362 215 16 62 396 44 383 3.53e-17 85.9
Msa0255210 MtrunA17_Chr2g0333091 26.361 349 227 12 90 426 81 411 4.82e-17 85.5
Msa0255210 MtrunA17_Chr3g0106201 25.316 395 256 15 62 433 41 419 3.19e-16 82.8
Msa0255210 MtrunA17_Chr3g0106221 28.997 369 206 18 62 396 43 389 6.84e-16 81.6
Msa0255210 MtrunA17_Chr1g0202331 24.552 391 228 15 70 409 56 430 7.85e-16 81.6
Msa0255210 MtrunA17_Chr3g0106191 28.977 352 205 15 96 427 2 328 1.16e-15 80.9
Msa0255210 MtrunA17_Chr8g0340081 24.863 366 225 13 93 427 79 425 1.24e-15 80.9
Msa0255210 MtrunA17_Chr8g0348661 27.094 406 227 20 62 427 33 409 1.35e-15 80.9
Msa0255210 MtrunA17_Chr2g0280691 25.745 369 205 18 63 394 48 384 1.80e-15 80.5
Msa0255210 MtrunA17_Chr6g0467281 26.908 249 153 6 93 332 72 300 3.97e-15 79.3
Msa0255210 MtrunA17_Chr4g0053161 28.173 323 189 14 93 394 101 401 3.98e-15 79.3
Msa0255210 MtrunA17_Chr5g0428111 27.666 347 179 16 91 396 78 393 6.24e-15 78.6
Msa0255210 MtrunA17_Chr3g0078551 26.316 380 217 17 91 426 75 435 6.51e-15 78.6
Msa0255210 MtrunA17_Chr8g0361281 26.453 344 184 14 93 394 72 388 7.46e-15 78.6
Msa0255210 MtrunA17_Chr2g0280681 26.807 332 190 15 93 394 78 386 9.10e-15 78.2
Msa0255210 MtrunA17_Chr2g0280701 25.076 327 205 11 93 394 73 384 9.11e-15 78.2
Msa0255210 MtrunA17_Chr8g0361311 25.654 382 220 16 93 435 74 430 9.65e-15 77.0
Msa0255210 MtrunA17_Chr2g0318171 24.047 341 225 13 93 424 90 405 1.01e-14 77.8
Msa0255210 MtrunA17_Chr3g0084621 26.807 332 191 16 93 394 79 388 1.03e-14 77.8
Msa0255210 MtrunA17_Chr8g0340091 23.706 367 203 13 93 427 130 451 1.20e-14 77.8
Msa0255210 MtrunA17_Chr5g0428101 38.889 144 74 4 91 228 77 212 4.76e-14 75.9
Msa0255210 MtrunA17_Chr8g0361251 25.526 380 219 15 93 433 74 428 9.52e-14 74.7
Msa0255210 MtrunA17_Chr4g0042391 23.043 460 268 22 10 427 2 417 2.07e-13 73.6
Msa0255210 MtrunA17_Chr6g0467301 27.888 251 148 10 93 332 77 305 8.93e-13 71.6
Msa0255210 MtrunA17_Chr2g0323241 26.685 356 195 19 93 412 81 406 1.16e-12 70.5
Msa0255210 MtrunA17_Chr3g0098791 37.600 125 65 6 93 205 81 204 1.32e-12 70.9
Msa0255210 MtrunA17_Chr7g0236231 23.810 357 183 17 93 399 84 401 3.47e-12 69.7
Msa0255210 MtrunA17_Chr8g0340071 28.226 248 144 10 93 326 77 304 3.85e-12 69.7
Msa0255210 MtrunA17_Chr3g0078531 25.668 374 227 15 91 426 85 445 4.21e-12 69.7
Msa0255210 MtrunA17_Chr8g0361301 24.054 370 232 16 93 431 75 426 4.92e-12 69.3
Msa0255210 MtrunA17_Chr3g0114851 27.234 235 145 10 93 323 81 293 1.27e-11 68.2
Msa0255210 MtrunA17_Chr7g0237391 26.816 358 217 16 62 396 48 383 1.33e-11 67.8
Msa0255210 MtrunA17_Chr4g0042341 23.445 418 256 18 14 394 4 394 1.44e-11 67.8
Msa0255210 MtrunA17_Chr8g0361441 25.075 335 196 15 93 394 77 389 4.28e-11 66.2
Msa0255210 MtrunA17_Chr8g0338501 23.353 334 226 13 93 404 109 434 5.47e-11 65.9
Msa0255210 MtrunA17_Chr4g0042441 25.915 328 203 14 93 394 74 387 6.68e-11 65.5
Msa0255210 MtrunA17_Chr7g0234561 25.071 351 191 16 114 427 44 359 7.09e-11 65.5
Msa0255210 MtrunA17_Chr8g0361261 23.656 372 231 16 93 431 106 457 7.92e-11 65.5
Msa0255210 MtrunA17_Chr8g0338511 34.821 112 71 1 93 204 85 194 8.07e-11 64.7
Msa0255210 MtrunA17_Chr4g0042401 26.316 342 188 17 91 394 73 388 8.74e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0255210 AT1G78860.1 47.204 447 204 9 1 428 1 434 3.21e-132 396
Msa0255210 AT1G78860.1 39.224 232 125 7 425 647 210 434 1.58e-47 174
Msa0255210 AT1G78850.1 46.637 446 208 9 1 428 1 434 6.24e-131 392
Msa0255210 AT1G78850.1 42.775 173 95 2 478 647 263 434 6.58e-47 172
Msa0255210 AT1G16905.1 44.258 418 197 7 28 428 24 422 3.29e-116 354
Msa0255210 AT1G16905.1 43.529 170 95 1 478 647 254 422 2.08e-47 172
Msa0255210 AT1G78830.1 42.129 451 225 11 10 425 5 454 2.10e-108 335
Msa0255210 AT1G78830.1 36.898 187 100 6 470 644 274 454 5.19e-29 121
Msa0255210 AT1G78820.1 40.659 455 234 11 6 425 1 454 1.52e-104 325
Msa0255210 AT1G78820.1 38.503 187 97 6 470 644 274 454 7.51e-31 126
Msa0255210 AT5G35370.1 27.298 359 214 15 93 426 86 422 6.80e-24 107
Msa0255210 AT4G00340.1 26.044 407 227 15 63 429 40 412 1.31e-18 90.9
Msa0255210 AT4G00340.2 27.419 372 204 14 63 401 40 378 1.38e-18 90.9
Msa0255210 AT3G12000.1 27.174 368 218 16 63 399 56 404 3.10e-17 85.1
Msa0255210 AT4G32300.1 23.873 377 244 14 70 428 61 412 9.30e-17 85.1
Msa0255210 AT4G21390.1 26.970 330 199 14 93 394 79 394 1.56e-16 84.3
Msa0255210 AT1G65790.3 26.935 323 201 11 92 394 78 385 1.84e-16 83.6
Msa0255210 AT1G65790.2 26.935 323 201 11 92 394 78 385 1.84e-16 83.6
Msa0255210 AT4G21390.2 26.970 330 199 14 93 394 79 394 1.85e-16 84.0
Msa0255210 AT3G51710.1 26.048 334 213 13 102 428 103 409 2.27e-16 82.8
Msa0255210 AT1G65790.1 26.935 323 201 11 92 394 78 385 2.77e-16 83.6
Msa0255210 AT5G03700.1 23.780 328 209 11 113 426 109 409 7.69e-16 81.3
Msa0255210 AT2G19130.1 23.077 468 282 18 1 432 2 427 8.45e-15 78.6
Msa0255210 AT4G11900.2 25.806 403 213 18 93 436 81 456 1.06e-14 78.2
Msa0255210 AT4G11900.3 25.806 403 213 18 93 436 81 456 1.06e-14 78.2
Msa0255210 AT4G11900.6 25.806 403 213 18 93 436 81 456 1.07e-14 78.2
Msa0255210 AT4G11900.4 25.806 403 213 18 93 436 81 456 1.07e-14 78.2
Msa0255210 AT4G11900.10 25.871 402 212 18 93 435 81 455 1.11e-14 77.8
Msa0255210 AT4G11900.5 25.871 402 212 18 93 435 81 455 1.11e-14 77.8
Msa0255210 AT4G11900.1 25.806 403 213 18 93 436 81 456 1.17e-14 78.2
Msa0255210 AT4G11900.7 26.055 403 212 19 93 436 81 456 1.25e-14 77.8
Msa0255210 AT4G11900.9 25.806 403 213 18 93 436 12 387 1.30e-14 78.2
Msa0255210 AT4G11900.8 26.055 403 212 19 93 436 12 387 1.34e-14 77.8
Msa0255210 AT2G41890.1 28.754 313 187 14 103 399 91 383 3.70e-14 76.6
Msa0255210 AT1G11330.3 25.588 340 202 16 93 398 84 406 1.73e-13 74.3
Msa0255210 AT1G11330.2 25.588 340 202 16 93 398 84 406 1.87e-13 74.3
Msa0255210 AT1G11330.1 25.588 340 202 16 93 398 84 406 2.13e-13 74.3
Msa0255210 AT1G65800.2 25.000 388 225 16 49 394 26 389 4.10e-13 72.8
Msa0255210 AT1G65800.1 26.586 331 196 14 92 394 78 389 5.14e-13 72.8
Msa0255210 AT1G61370.1 25.369 339 197 14 93 396 74 391 3.53e-12 70.1
Msa0255210 AT1G61360.1 26.036 338 195 16 93 396 69 385 1.23e-11 68.6
Msa0255210 AT1G61380.1 28.980 245 136 13 93 320 70 293 2.14e-11 67.8
Msa0255210 AT1G11410.1 22.892 415 234 22 93 456 72 451 3.03e-11 67.4
Msa0255210 AT1G11410.3 22.892 415 234 22 93 456 48 427 3.29e-11 67.0
Msa0255210 AT1G11410.4 22.892 415 234 22 93 456 79 458 3.46e-11 67.0
Msa0255210 AT4G03230.5 24.936 389 207 19 113 443 30 391 5.54e-11 66.6
Msa0255210 AT1G34300.1 25.911 247 151 8 93 332 74 295 5.83e-11 66.2

Find 120 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGAGAGATGTGGGAAATT+TGG 0.150939 2_2:+48833749 Msa0255210:CDS
CCAGAGAGATGTGGGAAATT+TGG 0.150939 2_2:+48835916 Msa0255210:CDS
GTGCTAGAGTGAAGGCATTT+TGG 0.194306 2_2:-48833031 None:intergenic
ACCTTCAAATTTGTCAATTC+AGG 0.207413 2_2:+48832915 Msa0255210:CDS
CCTATTGGAATTCATCTAAT+TGG 0.210505 2_2:+48835620 Msa0255210:CDS
CCTCTGGAGAATGGAATATT+TGG 0.242972 2_2:+48833803 Msa0255210:CDS
CAGAGAGATGTGGGAAATTT+GGG 0.259031 2_2:+48833750 Msa0255210:CDS
CAGAGAGATGTGGGAAATTT+GGG 0.259031 2_2:+48835917 Msa0255210:CDS
TGGTCCTTATAGTTTGGTTT+TGG 0.289630 2_2:+48833397 Msa0255210:CDS
AATCCATACTCAAATGATTC+TGG 0.297053 2_2:-48833524 None:intergenic
ATAGTACTTTAACATATCTT+AGG 0.298885 2_2:+48833609 Msa0255210:CDS
AAAGGCAACAACACCTATAT+TGG 0.309987 2_2:-48833213 None:intergenic
GTTGCCAATTCTACCACTTT+TGG 0.323929 2_2:+48833557 Msa0255210:CDS
GATCCAGAATCATTTGAGTA+TGG 0.330989 2_2:+48833521 Msa0255210:CDS
AAGTGTAATGCTAAGCCTTT+AGG 0.332502 2_2:+48836003 Msa0255210:CDS
TTTACCAAAAGTGGTAGAAT+TGG 0.337784 2_2:-48833561 None:intergenic
TATCTTAGGCTTGGAATTGA+TGG 0.341629 2_2:+48833623 Msa0255210:CDS
CATAATCACTGTTTCATTCC+AGG 0.343718 2_2:+48832989 Msa0255210:CDS
CAAACAAACACTTCCAATAT+AGG 0.347497 2_2:+48833200 Msa0255210:CDS
ATATAGGTGTTGTTGCCTTT+AGG 0.351793 2_2:+48833216 Msa0255210:CDS
GTTAAAGTGCTATTATTTAC+CGG 0.352398 2_2:-48835766 None:intergenic
TAATACAAAGCCAAACCTTT+AGG 0.354199 2_2:-48833422 None:intergenic
TGTTGATGGTCCTTATAGTT+TGG 0.357941 2_2:+48833391 Msa0255210:CDS
GATGAATCCATTGTAGAATA+TGG 0.358322 2_2:+48832945 Msa0255210:CDS
AAGTGTAGTCCTAAGCCTTT+AGG 0.361000 2_2:+48833836 Msa0255210:CDS
GGCTCCAAAACCAAACTATA+AGG 0.363469 2_2:-48833401 None:intergenic
GGCTTATCTTATTACTTATT+AGG 0.367191 2_2:-48836261 None:intergenic
CCAATTAGATGAATTCCAAT+AGG 0.367562 2_2:-48835620 None:intergenic
TAGATGTTCAAGATGGTGTT+TGG 0.367668 2_2:+48833672 Msa0255210:CDS
GATGAATTCCAATAGGGAAT+TGG 0.367962 2_2:-48835613 None:intergenic
TGTATTATAAGAGTATATAT+TGG 0.368951 2_2:+48833438 Msa0255210:CDS
GATCAATATTTAAAACCTAA+TGG 0.372051 2_2:+48833329 Msa0255210:CDS
ATATCTGATCCATTTGAGAT+TGG 0.374078 2_2:+48835688 Msa0255210:CDS
CACCTAGGCCAATTCCCTAT+TGG 0.381964 2_2:+48835605 Msa0255210:intron
ATAGCACTTTAACATATCTA+AGG 0.382513 2_2:+48835776 Msa0255210:CDS
TTAAATATTGATCAACCAAA+AGG 0.385064 2_2:-48833319 None:intergenic
GTCCTTCAAAACTTGTTAGT+AGG 0.397669 2_2:+48833351 Msa0255210:CDS
TCATCCAACAGATACCCTTT+TGG 0.400023 2_2:+48833304 Msa0255210:CDS
ACCTGAATTGACAAATTTGA+AGG 0.409406 2_2:-48832916 None:intergenic
TTTCATTACTACAAAATTGA+AGG 0.410194 2_2:+48833881 Msa0255210:CDS
GCCTTTAGGTTACTCTCAAA+TGG 0.414987 2_2:+48833230 Msa0255210:CDS
CCAAATTTCCCACATCTCTC+TGG 0.417212 2_2:-48833749 None:intergenic
CCAAATTTCCCACATCTCTC+TGG 0.417212 2_2:-48835916 None:intergenic
CCCAACACACTTACAATCCT+TGG 0.423492 2_2:-48836139 None:intergenic
TATCTAAGGCTAGGAATTGA+TGG 0.429940 2_2:+48835790 Msa0255210:CDS
ACACTACTGGTGATAGAGTA+AGG 0.430716 2_2:+48836091 Msa0255210:CDS
TTTCATTACTACAAAATTGA+AGG 0.432875 2_2:+48836045 Msa0255210:CDS
TATATGATCAAATACACTAT+TGG 0.435441 2_2:+48833914 Msa0255210:CDS
CCCGACACACTTGCAATCCT+TGG 0.436348 2_2:-48833975 None:intergenic
CCAAGGATTGCAAGTGTGTC+GGG 0.440786 2_2:+48833975 Msa0255210:CDS
TTGATGTACGTGATGGTGTT+TGG 0.443161 2_2:+48835839 Msa0255210:CDS
AAGTGCAATCCAATCTCAAA+TGG 0.453322 2_2:-48835697 None:intergenic
AACACCTTGAGTCATCCTTA+TGG 0.455333 2_2:-48834006 None:intergenic
ACTTTAACATATCTTAGGCT+TGG 0.464890 2_2:+48833614 Msa0255210:CDS
TGGAGAATGGAACATTTGCT+TGG 0.471864 2_2:+48835974 Msa0255210:CDS
CCAAGGATTGTAAGTGTGTT+GGG 0.480848 2_2:+48836139 Msa0255210:CDS
AACACCTTGACTTATCTTTG+TGG 0.487108 2_2:-48836170 None:intergenic
TTCACTCTAGCACTTCGAAT+GGG 0.488713 2_2:+48833041 Msa0255210:CDS
GAACAGTATAGTGAGAAAAG+AGG 0.491187 2_2:-48832844 None:intergenic
TTGGTAAAAGTATCATTGGT+AGG 0.499228 2_2:+48833576 Msa0255210:CDS
CAATTAGATGAATTCCAATA+GGG 0.502032 2_2:-48835619 None:intergenic
ATCAAATACACTATTGGTGA+TGG 0.503903 2_2:+48833920 Msa0255210:CDS
CATACTCCTCCTAAAGGCTT+AGG 0.506091 2_2:-48833845 None:intergenic
TAAATATTGATCAACCAAAA+GGG 0.511119 2_2:-48833318 None:intergenic
ACCATTTGAGAGTAACCTAA+AGG 0.511899 2_2:-48833231 None:intergenic
GTTAAAGTACTATTCTTCAC+TGG 0.513915 2_2:-48833599 None:intergenic
TGGAGGTAATTACAGAAGGA+TGG 0.518177 2_2:+48832965 Msa0255210:CDS
TGTCGGGTATTTCTACCATA+AGG 0.525920 2_2:+48833991 Msa0255210:CDS
ATGCTGATGGAAGAATTGTT+TGG 0.528512 2_2:+48833177 Msa0255210:CDS
CTTGTGTTGGCTAATGCTGA+TGG 0.532407 2_2:+48833164 Msa0255210:CDS
TCAATGTGTTGGTTGTCCTC+TGG 0.535016 2_2:+48833787 Msa0255210:CDS
TATGAAAATATTTAGTGAGC+CGG 0.539381 2_2:+48835747 Msa0255210:CDS
TACATGAGTAAATACACTAC+TGG 0.539734 2_2:+48836078 Msa0255210:CDS
GTTGGTTGTCCTCTGGAGAA+TGG 0.544761 2_2:+48833794 Msa0255210:CDS
GCATTGCATACTCCTCCTAA+AGG 0.549299 2_2:-48833851 None:intergenic
TACGCATGTGGGTTATATCA+AGG 0.551013 2_2:+48834072 Msa0255210:CDS
GTTGGTTGTCCATTGGAGAA+TGG 0.552362 2_2:+48835961 Msa0255210:CDS
TGGAGAATGGAATATTTGGT+TGG 0.554960 2_2:+48833807 Msa0255210:CDS
GGAGGTAATTACAGAAGGAT+GGG 0.555281 2_2:+48832966 Msa0255210:CDS
GTCAATTGCCAGAGAGATGT+GGG 0.558292 2_2:+48833741 Msa0255210:CDS
GTCAATTGCCAGAGAGATGT+GGG 0.558292 2_2:+48835908 Msa0255210:CDS
ACCAAGGATTGCAAGTGTGT+CGG 0.559055 2_2:+48833974 Msa0255210:CDS
TCAATGTGTTGGTTGTCCAT+TGG 0.560431 2_2:+48835954 Msa0255210:CDS
TGTGAGGATAATCAATGTGT+TGG 0.560707 2_2:+48833776 Msa0255210:CDS
TGTGAGGATAATCAATGTGT+TGG 0.560707 2_2:+48835943 Msa0255210:CDS
TCAACCAAAAGGGTATCTGT+TGG 0.567927 2_2:-48833308 None:intergenic
ATTACCTCCATATTCTACAA+TGG 0.570665 2_2:-48832952 None:intergenic
ATAAGGATGACTCAAGGTGT+TGG 0.572407 2_2:+48834008 Msa0255210:CDS
ACCAAGGATTGTAAGTGTGT+TGG 0.574147 2_2:+48836138 Msa0255210:CDS
ACTTTAACATATCTAAGGCT+AGG 0.589291 2_2:+48835781 Msa0255210:CDS
AAACACCATCACGTACATCA+AGG 0.590174 2_2:-48835837 None:intergenic
ACAAAGATAAGTCAAGGTGT+TGG 0.592666 2_2:+48836172 Msa0255210:CDS
AATATGGAGGTAATTACAGA+AGG 0.595926 2_2:+48832961 Msa0255210:CDS
TGTAGTCCTAAGCCTTTAGG+AGG 0.598203 2_2:+48833839 Msa0255210:CDS
GGAGTAAGCGAAGTTAATTG+TGG 0.599523 2_2:+48833941 Msa0255210:CDS
GTTACTCTCAAATGGTAACA+TGG 0.602406 2_2:+48833238 Msa0255210:CDS
CTTAATAAAACCCACATGTG+TGG 0.606669 2_2:-48836235 None:intergenic
GCAAATGTTCCATTCTCCAA+TGG 0.608211 2_2:-48835970 None:intergenic
CTTCACTCTAGCACTTCGAA+TGG 0.608386 2_2:+48833040 Msa0255210:CDS
CACTACTGGTGATAGAGTAA+GGG 0.612487 2_2:+48836092 Msa0255210:CDS
TTTGCAAACTCTTACTAGAG+TGG 0.613085 2_2:+48834042 Msa0255210:CDS
TGGGAAATTTGGGCTTTGTG+AGG 0.614311 2_2:+48833760 Msa0255210:CDS
TGGGAAATTTGGGCTTTGTG+AGG 0.614311 2_2:+48835927 Msa0255210:CDS
AGTGGCAAATACTACGCATG+TGG 0.615407 2_2:+48834060 Msa0255210:CDS
AGTTCAAAATACCACACATG+TGG 0.615945 2_2:+48836224 Msa0255210:CDS
CATTCGAAGTGCTAGAGTGA+AGG 0.617248 2_2:-48833039 None:intergenic
TGGGTTTGGGAAGCAAATAG+AGG 0.619163 2_2:+48833092 Msa0255210:CDS
TGTTGATGGAAATCTTGTGT+TGG 0.627952 2_2:+48833151 Msa0255210:CDS
TATTTCCTTGATGTACGTGA+TGG 0.628431 2_2:+48835832 Msa0255210:CDS
TCTACCACAAAGATAAGTCA+AGG 0.633995 2_2:+48836166 Msa0255210:CDS
TGTCAATTGCCAGAGAGATG+TGG 0.634284 2_2:+48833740 Msa0255210:CDS
TGTCAATTGCCAGAGAGATG+TGG 0.634284 2_2:+48835907 Msa0255210:CDS
TTGTGGAAACAAATGTACCA+AGG 0.648353 2_2:+48833958 Msa0255210:CDS
TTGTGCAAATAAATGTACCA+AGG 0.661724 2_2:+48836122 Msa0255210:CDS
GAATCCATTGTAGAATATGG+AGG 0.662158 2_2:+48832948 Msa0255210:CDS
CCAAATATTCCATTCTCCAG+AGG 0.664062 2_2:-48833803 None:intergenic
TCTACCATAAGGATGACTCA+AGG 0.669490 2_2:+48834002 Msa0255210:CDS
GTTCAAAATACCACACATGT+GGG 0.676015 2_2:+48836225 Msa0255210:CDS
GTGGCAAATACTACGCATGT+GGG 0.682570 2_2:+48834061 Msa0255210:CDS
TCGAATGGGATTTGAAACGT+CGG 0.694400 2_2:+48833055 Msa0255210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATAATTTTATTACTTATT+AGG - chr2_2:48834100-48834119 None:intergenic 10.0%
!! ATATTTAAAAATAACGATTT+CGG - chr2_2:48835226-48835245 None:intergenic 10.0%
!!! AAATCGTTATTTTTAAATAT+AGG + chr2_2:48835226-48835245 Msa0255210:intron 10.0%
!!! TATTATTACTTTGATAATTT+GGG - chr2_2:48835359-48835378 None:intergenic 10.0%
!!! TTATTATTACTTTGATAATT+TGG - chr2_2:48835360-48835379 None:intergenic 10.0%
!!! TGTATTATAAGAGTATATAT+TGG + chr2_2:48833438-48833457 Msa0255210:CDS 15.0%
!! ATCATTTAAGAATTATCTTA+CGG - chr2_2:48835076-48835095 None:intergenic 15.0%
!! GATAATTCTTAAATGATATT+TGG + chr2_2:48835079-48835098 Msa0255210:intron 15.0%
!! TATTTAAAAATAACGATTTC+GGG - chr2_2:48835225-48835244 None:intergenic 15.0%
!!! TAAAGTTAGTTTTGAAAATT+AGG + chr2_2:48835508-48835527 Msa0255210:intron 15.0%
!!! AAAGTTAGTTTTGAAAATTA+GGG + chr2_2:48835509-48835528 Msa0255210:intron 15.0%
!! TAAATATTGATCAACCAAAA+GGG - chr2_2:48833321-48833340 None:intergenic 20.0%
!! TTAAATATTGATCAACCAAA+AGG - chr2_2:48833322-48833341 None:intergenic 20.0%
!!! GATCAATATTTAAAACCTAA+TGG + chr2_2:48833329-48833348 Msa0255210:CDS 20.0%
!! ATAGTACTTTAACATATCTT+AGG + chr2_2:48833609-48833628 Msa0255210:CDS 20.0%
!! TTTCATTACTACAAAATTGA+AGG + chr2_2:48833881-48833900 Msa0255210:CDS 20.0%
!! TATATGATCAAATACACTAT+TGG + chr2_2:48833914-48833933 Msa0255210:CDS 20.0%
!!! ATTTTGTTATTTCCTAATAG+TGG + chr2_2:48834172-48834191 Msa0255210:intron 20.0%
!! AGATTGGAATAATAAAGATA+TGG + chr2_2:48834199-48834218 Msa0255210:intron 20.0%
!!! ATATGAATTGTAGTTTGTTT+TGG - chr2_2:48834513-48834532 None:intergenic 20.0%
!! ATGGTATAAATCATGTAATT+AGG + chr2_2:48834670-48834689 Msa0255210:intron 20.0%
!! CAAATATCAGAATTATCTTA+CGG - chr2_2:48834965-48834984 None:intergenic 20.0%
!! ATAATAAAGTAAGGCTATTT+CGG - chr2_2:48835050-48835069 None:intergenic 20.0%
!! TGATTGCGATAAATTTAAAA+AGG - chr2_2:48835184-48835203 None:intergenic 20.0%
!! ATCAAAAACAACAATTCATT+TGG + chr2_2:48835265-48835284 Msa0255210:intron 20.0%
!! TAGAAATTTCTTTAATGTAG+AGG + chr2_2:48835418-48835437 Msa0255210:intron 20.0%
!! TTTCATTACTACAAAATTGA+AGG + chr2_2:48833881-48833900 Msa0255210:CDS 20.0%
!! AATTTGAAGGTTTCATTTTG+TGG - chr2_2:48832906-48832925 None:intergenic 25.0%
!!! GAAAATGCAACTTTTTCATT+AGG + chr2_2:48833128-48833147 Msa0255210:CDS 25.0%
!!! ATGGTTTTAATTGATGCTAA+AGG + chr2_2:48833257-48833276 Msa0255210:CDS 25.0%
! TCAGAAAAAGAAAATGTTGA+TGG + chr2_2:48833377-48833396 Msa0255210:CDS 25.0%
!! AATGATACTTTTACCAAAAG+TGG - chr2_2:48833573-48833592 None:intergenic 25.0%
!!! ACTTTTGGTAAAAGTATCAT+TGG + chr2_2:48833572-48833591 Msa0255210:CDS 25.0%
!! TATTTTCTAGATGTTCAAGA+TGG + chr2_2:48833665-48833684 Msa0255210:CDS 25.0%
!!! GCACAAGTTAGATTTTTTTA+AGG - chr2_2:48834299-48834318 None:intergenic 25.0%
! TCTTACTAAATTGCTTTCTT+AGG - chr2_2:48834490-48834509 None:intergenic 25.0%
!! CACTTGATGTTATTTGATTA+AGG - chr2_2:48834637-48834656 None:intergenic 25.0%
! AATGAAGAATGAAGAAAACA+AGG + chr2_2:48834816-48834835 Msa0255210:intron 25.0%
! CTAATAAAGTAAGGCTATTT+CGG - chr2_2:48834939-48834958 None:intergenic 25.0%
! CGTAAGATAATTCTGATATT+TGG + chr2_2:48834963-48834982 Msa0255210:intron 25.0%
! ATAATTCTGATATTTGGTCT+AGG + chr2_2:48834969-48834988 Msa0255210:intron 25.0%
! TTACGGTGTATAATAAAGTA+AGG - chr2_2:48835059-48835078 None:intergenic 25.0%
! TCTTAAATGATATTTGGTCT+AGG + chr2_2:48835085-48835104 Msa0255210:intron 25.0%
! GAAATTAACAACAATTCTCA+TGG - chr2_2:48835394-48835413 None:intergenic 25.0%
! TGTAGAGGATATATTGAAAT+TGG + chr2_2:48835433-48835452 Msa0255210:intron 25.0%
! GTAGAGGATATATTGAAATT+GGG + chr2_2:48835434-48835453 Msa0255210:intron 25.0%
! TAGAGGATATATTGAAATTG+GGG + chr2_2:48835435-48835454 Msa0255210:intron 25.0%
!! TATTTTATAGTGAGCAATAG+AGG - chr2_2:48835559-48835578 None:intergenic 25.0%
! CAATTAGATGAATTCCAATA+GGG - chr2_2:48835622-48835641 None:intergenic 25.0%
! TATGAAAATATTTAGTGAGC+CGG + chr2_2:48835747-48835766 Msa0255210:CDS 25.0%
!! GTTAAAGTGCTATTATTTAC+CGG - chr2_2:48835769-48835788 None:intergenic 25.0%
! ATAGCACTTTAACATATCTA+AGG + chr2_2:48835776-48835795 Msa0255210:CDS 25.0%
! TAGTGAGAAAAGAGGTTTTT+AGG - chr2_2:48832839-48832858 None:intergenic 30.0%
ACCTTCAAATTTGTCAATTC+AGG + chr2_2:48832915-48832934 Msa0255210:CDS 30.0%
ACCTGAATTGACAAATTTGA+AGG - chr2_2:48832919-48832938 None:intergenic 30.0%
GATGAATCCATTGTAGAATA+TGG + chr2_2:48832945-48832964 Msa0255210:CDS 30.0%
ATTACCTCCATATTCTACAA+TGG - chr2_2:48832955-48832974 None:intergenic 30.0%
AATATGGAGGTAATTACAGA+AGG + chr2_2:48832961-48832980 Msa0255210:CDS 30.0%
TAGTGTTGTAAAAACAAACC+TGG - chr2_2:48833010-48833029 None:intergenic 30.0%
! AAGTTGCATTTTCATCAACT+GGG - chr2_2:48833121-48833140 None:intergenic 30.0%
! AAAGTTGCATTTTCATCAAC+TGG - chr2_2:48833122-48833141 None:intergenic 30.0%
!!! ACTTTTTCATTAGGTGTTGA+TGG + chr2_2:48833137-48833156 Msa0255210:CDS 30.0%
CAAACAAACACTTCCAATAT+AGG + chr2_2:48833200-48833219 Msa0255210:CDS 30.0%
!!! ATGCTAAAGGTAGTTTTGTT+TGG + chr2_2:48833270-48833289 Msa0255210:CDS 30.0%
TAATACAAAGCCAAACCTTT+AGG - chr2_2:48833425-48833444 None:intergenic 30.0%
!!! TATATTGGTTTTCATCTGCT+TGG + chr2_2:48833453-48833472 Msa0255210:CDS 30.0%
!! GCTTGGTTTTCATTTGAAAA+AGG + chr2_2:48833470-48833489 Msa0255210:CDS 30.0%
AATCCATACTCAAATGATTC+TGG - chr2_2:48833527-48833546 None:intergenic 30.0%
TTTACCAAAAGTGGTAGAAT+TGG - chr2_2:48833564-48833583 None:intergenic 30.0%
!! TTGGTAAAAGTATCATTGGT+AGG + chr2_2:48833576-48833595 Msa0255210:CDS 30.0%
! GTTAAAGTACTATTCTTCAC+TGG - chr2_2:48833602-48833621 None:intergenic 30.0%
ACTTTAACATATCTTAGGCT+TGG + chr2_2:48833614-48833633 Msa0255210:CDS 30.0%
ATCAAATACACTATTGGTGA+TGG + chr2_2:48833920-48833939 Msa0255210:CDS 30.0%
!! GAATCTCACTTTAAAACCTT+TGG - chr2_2:48834555-48834574 None:intergenic 30.0%
!!! GTTTTAAAGTGAGATTCTCA+TGG + chr2_2:48834558-48834577 Msa0255210:intron 30.0%
GATTCTCATGGTTTGAAAAA+TGG + chr2_2:48834570-48834589 Msa0255210:intron 30.0%
! CAAGTGTTTTGTGTTTTCTA+TGG + chr2_2:48834651-48834670 Msa0255210:intron 30.0%
GGTTTGAAGACAAAACAATT+CGG + chr2_2:48834747-48834766 Msa0255210:intron 30.0%
TTCTTCCTTAATATGAGCTT+GGG - chr2_2:48834791-48834810 None:intergenic 30.0%
TTTCTTCCTTAATATGAGCT+TGG - chr2_2:48834792-48834811 None:intergenic 30.0%
AAAAAAAATTCCCACAACCA+TGG + chr2_2:48834839-48834858 Msa0255210:intron 30.0%
TTACGGTGTCTAATAAAGTA+AGG - chr2_2:48834948-48834967 None:intergenic 30.0%
TAATCCAACAAGGAATTAGA+GGG + chr2_2:48835001-48835020 Msa0255210:intron 30.0%
TAATCCAACAAGGAATTAGA+GGG + chr2_2:48835001-48835020 Msa0255210:intron 30.0%
!!! TTAGAGACATAGTTTTGACA+GGG - chr2_2:48835160-48835179 None:intergenic 30.0%
!!! TTTAGAGACATAGTTTTGAC+AGG - chr2_2:48835161-48835180 None:intergenic 30.0%
GACTTACTACTCTATTACTT+TGG + chr2_2:48835295-48835314 Msa0255210:intron 30.0%
! TTTGATAATTTGGGTACACT+TGG - chr2_2:48835350-48835369 None:intergenic 30.0%
AGAGGATATATTGAAATTGG+GGG + chr2_2:48835436-48835455 Msa0255210:intron 30.0%
CCAATTAGATGAATTCCAAT+AGG - chr2_2:48835623-48835642 None:intergenic 30.0%
CCTATTGGAATTCATCTAAT+TGG + chr2_2:48835620-48835639 Msa0255210:CDS 30.0%
! ATATCTGATCCATTTGAGAT+TGG + chr2_2:48835688-48835707 Msa0255210:CDS 30.0%
!!! TTTTTTCACAATTTTGCCTC+TGG + chr2_2:48835721-48835740 Msa0255210:CDS 30.0%
! AAATATTTTCATACCACCAG+AGG - chr2_2:48835740-48835759 None:intergenic 30.0%
! ACTTTAACATATCTAAGGCT+AGG + chr2_2:48835781-48835800 Msa0255210:CDS 30.0%
TACATGAGTAAATACACTAC+TGG + chr2_2:48836078-48836097 Msa0255210:CDS 30.0%
TTGTGCAAATAAATGTACCA+AGG + chr2_2:48836122-48836141 Msa0255210:CDS 30.0%
GAACAGTATAGTGAGAAAAG+AGG - chr2_2:48832847-48832866 None:intergenic 35.0%
GAATCCATTGTAGAATATGG+AGG + chr2_2:48832948-48832967 Msa0255210:CDS 35.0%
CATAATCACTGTTTCATTCC+AGG + chr2_2:48832989-48833008 Msa0255210:CDS 35.0%
! TGTTGATGGAAATCTTGTGT+TGG + chr2_2:48833151-48833170 Msa0255210:CDS 35.0%
ATGCTGATGGAAGAATTGTT+TGG + chr2_2:48833177-48833196 Msa0255210:CDS 35.0%
AAAGGCAACAACACCTATAT+TGG - chr2_2:48833216-48833235 None:intergenic 35.0%
!! ATATAGGTGTTGTTGCCTTT+AGG + chr2_2:48833216-48833235 Msa0255210:CDS 35.0%
ACCATTTGAGAGTAACCTAA+AGG - chr2_2:48833234-48833253 None:intergenic 35.0%
GTTACTCTCAAATGGTAACA+TGG + chr2_2:48833238-48833257 Msa0255210:CDS 35.0%
!!! ACAAGTTTTGAAGGACCATT+AGG - chr2_2:48833347-48833366 None:intergenic 35.0%
!! GTCCTTCAAAACTTGTTAGT+AGG + chr2_2:48833351-48833370 Msa0255210:CDS 35.0%
!! AGCCTACTAACAAGTTTTGA+AGG - chr2_2:48833356-48833375 None:intergenic 35.0%
!! TGTTGATGGTCCTTATAGTT+TGG + chr2_2:48833391-48833410 Msa0255210:CDS 35.0%
!! TGGTCCTTATAGTTTGGTTT+TGG + chr2_2:48833397-48833416 Msa0255210:CDS 35.0%
GATCCAGAATCATTTGAGTA+TGG + chr2_2:48833521-48833540 Msa0255210:CDS 35.0%
TATCTTAGGCTTGGAATTGA+TGG + chr2_2:48833623-48833642 Msa0255210:CDS 35.0%
TAGATGTTCAAGATGGTGTT+TGG + chr2_2:48833672-48833691 Msa0255210:CDS 35.0%
TGTGAGGATAATCAATGTGT+TGG + chr2_2:48833776-48833795 Msa0255210:CDS 35.0%
TGGAGAATGGAATATTTGGT+TGG + chr2_2:48833807-48833826 Msa0255210:CDS 35.0%
TTGTGGAAACAAATGTACCA+AGG + chr2_2:48833958-48833977 Msa0255210:CDS 35.0%
TTTGCAAACTCTTACTAGAG+TGG + chr2_2:48834042-48834061 Msa0255210:CDS 35.0%
! ATTATACTAGCTTCCTCCTA+AGG + chr2_2:48834113-48834132 Msa0255210:intron 35.0%
TCCTAATAGTGGTTTCAGAT+TGG + chr2_2:48834183-48834202 Msa0255210:intron 35.0%
! TCCAATCTGAAACCACTATT+AGG - chr2_2:48834187-48834206 None:intergenic 35.0%
TTGTATCACCATTATCCACT+TGG + chr2_2:48834222-48834241 Msa0255210:intron 35.0%
! AAATCTAACTTGTGCCCATA+AGG + chr2_2:48834304-48834323 Msa0255210:intron 35.0%
! AATCTAACTTGTGCCCATAA+GGG + chr2_2:48834305-48834324 Msa0255210:intron 35.0%
TCTTTATCTTGTGCCCTTAT+GGG - chr2_2:48834321-48834340 None:intergenic 35.0%
ATCTTTATCTTGTGCCCTTA+TGG - chr2_2:48834322-48834341 None:intergenic 35.0%
TGCATTTGAACACATTCCAA+AGG + chr2_2:48834536-48834555 Msa0255210:intron 35.0%
TAGCTTCTGTAACTTTCATG+AGG - chr2_2:48834708-48834727 None:intergenic 35.0%
TAGAGAATCAAGCACTACAA+AGG + chr2_2:48834726-48834745 Msa0255210:intron 35.0%
TTGAAGACAAAACAATTCGG+AGG + chr2_2:48834750-48834769 Msa0255210:intron 35.0%
TTAATATGAGCTTGGGACTT+GGG - chr2_2:48834784-48834803 None:intergenic 35.0%
ATCACATTATCCATTGACCA+TGG - chr2_2:48834859-48834878 None:intergenic 35.0%
TATTTCGGCTACAGACATAT+AGG - chr2_2:48834924-48834943 None:intergenic 35.0%
CTAATCCAACAAGGAATTAG+AGG + chr2_2:48835000-48835019 Msa0255210:intron 35.0%
AATCCAACAAGGAATTAGAG+GGG + chr2_2:48835002-48835021 Msa0255210:intron 35.0%
! TAAAGTAAGGCTATTTCGGA+GGG - chr2_2:48835046-48835065 None:intergenic 35.0%
! ATAAAGTAAGGCTATTTCGG+AGG - chr2_2:48834936-48834955 None:intergenic 35.0%
CTAATCCAACAAGGAATTAG+AGG + chr2_2:48835000-48835019 Msa0255210:intron 35.0%
AATCCAACAAGGAATTAGAG+GGG + chr2_2:48835002-48835021 Msa0255210:intron 35.0%
!!! TAGAGACATAGTTTTGACAG+GGG - chr2_2:48835159-48835178 None:intergenic 35.0%
GATGAATTCCAATAGGGAAT+TGG - chr2_2:48835616-48835635 None:intergenic 35.0%
AAGTGCAATCCAATCTCAAA+TGG - chr2_2:48835700-48835719 None:intergenic 35.0%
! TATCTAAGGCTAGGAATTGA+TGG + chr2_2:48835790-48835809 Msa0255210:CDS 35.0%
TATTTCCTTGATGTACGTGA+TGG + chr2_2:48835832-48835851 Msa0255210:CDS 35.0%
TGTGAGGATAATCAATGTGT+TGG + chr2_2:48833776-48833795 Msa0255210:CDS 35.0%
AAGTGTAATGCTAAGCCTTT+AGG + chr2_2:48836003-48836022 Msa0255210:CDS 35.0%
!!! CTTGTTTTGCATTCTCCTAA+AGG - chr2_2:48836021-48836040 None:intergenic 35.0%
TCTACCACAAAGATAAGTCA+AGG + chr2_2:48836166-48836185 Msa0255210:CDS 35.0%
AACACCTTGACTTATCTTTG+TGG - chr2_2:48836173-48836192 None:intergenic 35.0%
ACAAAGATAAGTCAAGGTGT+TGG + chr2_2:48836172-48836191 Msa0255210:CDS 35.0%
AGTTCAAAATACCACACATG+TGG + chr2_2:48836224-48836243 Msa0255210:CDS 35.0%
GTTCAAAATACCACACATGT+GGG + chr2_2:48836225-48836244 Msa0255210:CDS 35.0%
CTTAATAAAACCCACATGTG+TGG - chr2_2:48836238-48836257 None:intergenic 35.0%
!!! CACACATGTGGGTTTTATTA+AGG + chr2_2:48836236-48836255 Msa0255210:CDS 35.0%
TGGAGGTAATTACAGAAGGA+TGG + chr2_2:48832965-48832984 Msa0255210:CDS 40.0%
GGAGGTAATTACAGAAGGAT+GGG + chr2_2:48832966-48832985 Msa0255210:CDS 40.0%
!!! TGCTAGAGTGAAGGCATTTT+GGG - chr2_2:48833033-48833052 None:intergenic 40.0%
TTCACTCTAGCACTTCGAAT+GGG + chr2_2:48833041-48833060 Msa0255210:CDS 40.0%
! TCGAATGGGATTTGAAACGT+CGG + chr2_2:48833055-48833074 Msa0255210:CDS 40.0%
! AAACGTCGGAAGAGCTTTTT+CGG + chr2_2:48833069-48833088 Msa0255210:CDS 40.0%
! GCCTTTAGGTTACTCTCAAA+TGG + chr2_2:48833230-48833249 Msa0255210:CDS 40.0%
! TCATCCAACAGATACCCTTT+TGG + chr2_2:48833304-48833323 Msa0255210:CDS 40.0%
!! TCAACCAAAAGGGTATCTGT+TGG - chr2_2:48833311-48833330 None:intergenic 40.0%
GGCTCCAAAACCAAACTATA+AGG - chr2_2:48833404-48833423 None:intergenic 40.0%
!!! AGTTTGGTTTTGGAGCCTAA+AGG + chr2_2:48833407-48833426 Msa0255210:CDS 40.0%
! GTTGCCAATTCTACCACTTT+TGG + chr2_2:48833557-48833576 Msa0255210:CDS 40.0%
CAGAGAGATGTGGGAAATTT+GGG + chr2_2:48833750-48833769 Msa0255210:CDS 40.0%
CCAAATATTCCATTCTCCAG+AGG - chr2_2:48833806-48833825 None:intergenic 40.0%
! CCTCTGGAGAATGGAATATT+TGG + chr2_2:48833803-48833822 Msa0255210:CDS 40.0%
AAGTGTAGTCCTAAGCCTTT+AGG + chr2_2:48833836-48833855 Msa0255210:CDS 40.0%
GGAGTAAGCGAAGTTAATTG+TGG + chr2_2:48833941-48833960 Msa0255210:CDS 40.0%
! TGTCGGGTATTTCTACCATA+AGG + chr2_2:48833991-48834010 Msa0255210:CDS 40.0%
TCTACCATAAGGATGACTCA+AGG + chr2_2:48834002-48834021 Msa0255210:CDS 40.0%
AACACCTTGAGTCATCCTTA+TGG - chr2_2:48834009-48834028 None:intergenic 40.0%
ATAAGGATGACTCAAGGTGT+TGG + chr2_2:48834008-48834027 Msa0255210:CDS 40.0%
! TACGCATGTGGGTTATATCA+AGG + chr2_2:48834072-48834091 Msa0255210:CDS 40.0%
ACAAGACCAATACCATCCTT+AGG - chr2_2:48834132-48834151 None:intergenic 40.0%
CTTAATATGAGCTTGGGACT+TGG - chr2_2:48834785-48834804 None:intergenic 40.0%
CAAGTCCCAAGCTCATATTA+AGG + chr2_2:48834783-48834802 Msa0255210:intron 40.0%
TATCCATTGACCATGGTTGT+GGG - chr2_2:48834852-48834871 None:intergenic 40.0%
TTATCCATTGACCATGGTTG+TGG - chr2_2:48834853-48834872 None:intergenic 40.0%
GAACATACGCTAATCCAACA+AGG + chr2_2:48834991-48835010 Msa0255210:intron 40.0%
AATCCCCTCTAATTCCTTGT+TGG - chr2_2:48835008-48835027 None:intergenic 40.0%
! AAAGTAAGGCTATTTCGGAG+GGG - chr2_2:48835045-48835064 None:intergenic 40.0%
GAACATACGCTAATCCAACA+AGG + chr2_2:48834991-48835010 Msa0255210:intron 40.0%
AATCCCCTCTAATTCCTTGT+TGG - chr2_2:48835008-48835027 None:intergenic 40.0%
ACAAGGAATTAGAGGGGATT+CGG + chr2_2:48835008-48835027 Msa0255210:intron 40.0%
! TTTTTATGCGACCAACCCAT+CGG - chr2_2:48835472-48835491 None:intergenic 40.0%
TGAACATTGAGAGAGAAGAG+AGG - chr2_2:48835587-48835606 None:intergenic 40.0%
TTCTCTCTCAATGTTCACCT+AGG + chr2_2:48835590-48835609 Msa0255210:intron 40.0%
! TTTCACAATTTTGCCTCTGG+TGG + chr2_2:48835724-48835743 Msa0255210:CDS 40.0%
AAACACCATCACGTACATCA+AGG - chr2_2:48835840-48835859 None:intergenic 40.0%
! TTGATGTACGTGATGGTGTT+TGG + chr2_2:48835839-48835858 Msa0255210:CDS 40.0%
CAGAGAGATGTGGGAAATTT+GGG + chr2_2:48833750-48833769 Msa0255210:CDS 40.0%
!! TCAATGTGTTGGTTGTCCAT+TGG + chr2_2:48835954-48835973 Msa0255210:CDS 40.0%
GCAAATGTTCCATTCTCCAA+TGG - chr2_2:48835973-48835992 None:intergenic 40.0%
TGGAGAATGGAACATTTGCT+TGG + chr2_2:48835974-48835993 Msa0255210:CDS 40.0%
ACACTACTGGTGATAGAGTA+AGG + chr2_2:48836091-48836110 Msa0255210:CDS 40.0%
CACTACTGGTGATAGAGTAA+GGG + chr2_2:48836092-48836111 Msa0255210:CDS 40.0%
ACCAAGGATTGTAAGTGTGT+TGG + chr2_2:48836138-48836157 Msa0255210:CDS 40.0%
CCAAGGATTGTAAGTGTGTT+GGG + chr2_2:48836139-48836158 Msa0255210:CDS 40.0%
!!! GTGCTAGAGTGAAGGCATTT+TGG - chr2_2:48833034-48833053 None:intergenic 45.0%
! CATTCGAAGTGCTAGAGTGA+AGG - chr2_2:48833042-48833061 None:intergenic 45.0%
CTTCACTCTAGCACTTCGAA+TGG + chr2_2:48833040-48833059 Msa0255210:CDS 45.0%
!!! AAGAGCTTTTTCGGTGGGTT+TGG + chr2_2:48833078-48833097 Msa0255210:CDS 45.0%
!!! AGAGCTTTTTCGGTGGGTTT+GGG + chr2_2:48833079-48833098 Msa0255210:CDS 45.0%
TGGGTTTGGGAAGCAAATAG+AGG + chr2_2:48833092-48833111 Msa0255210:CDS 45.0%
!! CTTGTGTTGGCTAATGCTGA+TGG + chr2_2:48833164-48833183 Msa0255210:CDS 45.0%
!!! GGTTTTGGAGCCTAAAGGTT+TGG + chr2_2:48833412-48833431 Msa0255210:CDS 45.0%
TGTCAATTGCCAGAGAGATG+TGG + chr2_2:48833740-48833759 Msa0255210:CDS 45.0%
GTCAATTGCCAGAGAGATGT+GGG + chr2_2:48833741-48833760 Msa0255210:CDS 45.0%
CCAAATTTCCCACATCTCTC+TGG - chr2_2:48833752-48833771 None:intergenic 45.0%
CCAGAGAGATGTGGGAAATT+TGG + chr2_2:48833749-48833768 Msa0255210:CDS 45.0%
! TGGGAAATTTGGGCTTTGTG+AGG + chr2_2:48833760-48833779 Msa0255210:CDS 45.0%
!! TCAATGTGTTGGTTGTCCTC+TGG + chr2_2:48833787-48833806 Msa0255210:CDS 45.0%
TGTAGTCCTAAGCCTTTAGG+AGG + chr2_2:48833839-48833858 Msa0255210:CDS 45.0%
CATACTCCTCCTAAAGGCTT+AGG - chr2_2:48833848-48833867 None:intergenic 45.0%
GCATTGCATACTCCTCCTAA+AGG - chr2_2:48833854-48833873 None:intergenic 45.0%
ACCAAGGATTGCAAGTGTGT+CGG + chr2_2:48833974-48833993 Msa0255210:CDS 45.0%
AGTGGCAAATACTACGCATG+TGG + chr2_2:48834060-48834079 Msa0255210:CDS 45.0%
GTGGCAAATACTACGCATGT+GGG + chr2_2:48834061-48834080 Msa0255210:CDS 45.0%
! TACTAGCTTCCTCCTAAGGA+TGG + chr2_2:48834117-48834136 Msa0255210:intron 45.0%
CTTCCTCCTAAGGATGGTAT+TGG + chr2_2:48834123-48834142 Msa0255210:intron 45.0%
AGACCAATACCATCCTTAGG+AGG - chr2_2:48834129-48834148 None:intergenic 45.0%
CACCATTATCCACTTGGAGA+AGG + chr2_2:48834228-48834247 Msa0255210:intron 45.0%
CTCCTTCTCCAAGTGGATAA+TGG - chr2_2:48834233-48834252 None:intergenic 45.0%
CAATCAACTCCTTCTCCAAG+TGG - chr2_2:48834240-48834259 None:intergenic 45.0%
ATTCCCACAACCATGGTCAA+TGG + chr2_2:48834846-48834865 Msa0255210:intron 45.0%
TAAGTCCCTACTAGCACTAG+CGG + chr2_2:48834878-48834897 Msa0255210:intron 45.0%
AGCGGTGGAATATTTCACGA+AGG + chr2_2:48834896-48834915 Msa0255210:intron 45.0%
GCGGTGGAATATTTCACGAA+GGG + chr2_2:48834897-48834916 Msa0255210:intron 45.0%
CGGTGGAATATTTCACGAAG+GGG + chr2_2:48834898-48834917 Msa0255210:intron 45.0%
AGGAATTAGAGGGGATTCGA+AGG + chr2_2:48835011-48835030 Msa0255210:intron 45.0%
GTGAGCAATAGAGGATTCGA+AGG - chr2_2:48835550-48835569 None:intergenic 45.0%
! TTCCAATAGGGAATTGGCCT+AGG - chr2_2:48835610-48835629 None:intergenic 45.0%
TGTCAATTGCCAGAGAGATG+TGG + chr2_2:48833740-48833759 Msa0255210:CDS 45.0%
GTCAATTGCCAGAGAGATGT+GGG + chr2_2:48833741-48833760 Msa0255210:CDS 45.0%
CCAAATTTCCCACATCTCTC+TGG - chr2_2:48833752-48833771 None:intergenic 45.0%
CCAGAGAGATGTGGGAAATT+TGG + chr2_2:48833749-48833768 Msa0255210:CDS 45.0%
! TGGGAAATTTGGGCTTTGTG+AGG + chr2_2:48833760-48833779 Msa0255210:CDS 45.0%
GTTGGTTGTCCATTGGAGAA+TGG + chr2_2:48835961-48835980 Msa0255210:CDS 45.0%
CCCAACACACTTACAATCCT+TGG - chr2_2:48836142-48836161 None:intergenic 45.0%
!!! GTCGGAAGAGCTTTTTCGGT+GGG + chr2_2:48833073-48833092 Msa0255210:CDS 50.0%
! GTTGGTTGTCCTCTGGAGAA+TGG + chr2_2:48833794-48833813 Msa0255210:CDS 50.0%
CCAAGGATTGCAAGTGTGTC+GGG + chr2_2:48833975-48833994 Msa0255210:CDS 50.0%
TTCCACCGCTAGTGCTAGTA+GGG - chr2_2:48834886-48834905 None:intergenic 50.0%
ATTCCACCGCTAGTGCTAGT+AGG - chr2_2:48834887-48834906 None:intergenic 50.0%
AGGAATTAGAGGGGATTCGG+AGG + chr2_2:48835127-48835146 Msa0255210:intron 50.0%
ATTGAAATTGGGGGTTGCCC+TGG + chr2_2:48835445-48835464 Msa0255210:intron 50.0%
TTGAAATTGGGGGTTGCCCT+GGG + chr2_2:48835446-48835465 Msa0255210:intron 50.0%
CACCTAGGCCAATTCCCTAT+TGG + chr2_2:48835605-48835624 Msa0255210:intron 50.0%
!!! CGTCGGAAGAGCTTTTTCGG+TGG + chr2_2:48833072-48833091 Msa0255210:CDS 55.0%
CCCGACACACTTGCAATCCT+TGG - chr2_2:48833978-48833997 None:intergenic 55.0%
GTCCCTACTAGCACTAGCGG+TGG + chr2_2:48834881-48834900 Msa0255210:intron 60.0%
GTTGCCCTGGGCCGATGGGT+TGG + chr2_2:48835458-48835477 Msa0255210:intron 70.0%
GCGACCAACCCATCGGCCCA+GGG - chr2_2:48835465-48835484 None:intergenic 70.0%
TGCGACCAACCCATCGGCCC+AGG - chr2_2:48835466-48835485 None:intergenic 70.0%
TGGGGGTTGCCCTGGGCCGA+TGG + chr2_2:48835453-48835472 Msa0255210:intron 75.0%
GGGGGTTGCCCTGGGCCGAT+GGG + chr2_2:48835454-48835473 Msa0255210:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 48832819 48836272 48832819 ID=Msa0255210;Name=Msa0255210
chr2_2 mRNA 48832819 48836272 48832819 ID=Msa0255210-mRNA-1;Parent=Msa0255210;Name=Msa0255210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|648
chr2_2 exon 48832819 48834104 48832819 ID=Msa0255210-mRNA-1:exon:14790;Parent=Msa0255210-mRNA-1
chr2_2 exon 48835612 48836272 48835612 ID=Msa0255210-mRNA-1:exon:14791;Parent=Msa0255210-mRNA-1
chr2_2 CDS 48832819 48834104 48832819 ID=Msa0255210-mRNA-1:cds;Parent=Msa0255210-mRNA-1
chr2_2 CDS 48835612 48836272 48835612 ID=Msa0255210-mRNA-1:cds;Parent=Msa0255210-mRNA-1
Gene Sequence

>Msa0255210

ATGTCTTTTGTTCTTCTCCTAAAAACCTCTTTTCTCACTATACTGTTCTTATCATTCTCTACTGTCATTGCTCATGCAATCGTTCCACAAAATGAAACCTTCAAATTTGTCAATTCAGGTGCACTTGATGAATCCATTGTAGAATATGGAGGTAATTACAGAAGGATGGGCATAATCACTGTTTCATTCCAGGTTTGTTTTTACAACACTACCCAAAATGCCTTCACTCTAGCACTTCGAATGGGATTTGAAACGTCGGAAGAGCTTTTTCGGTGGGTTTGGGAAGCAAATAGAGGCAACCCAGTTGATGAAAATGCAACTTTTTCATTAGGTGTTGATGGAAATCTTGTGTTGGCTAATGCTGATGGAAGAATTGTTTGGCAAACAAACACTTCCAATATAGGTGTTGTTGCCTTTAGGTTACTCTCAAATGGTAACATGGTTTTAATTGATGCTAAAGGTAGTTTTGTTTGGCAAAGTTTTGATCATCCAACAGATACCCTTTTGGTTGATCAATATTTAAAACCTAATGGTCCTTCAAAACTTGTTAGTAGGCTTTCAGAAAAAGAAAATGTTGATGGTCCTTATAGTTTGGTTTTGGAGCCTAAAGGTTTGGCTTTGTATTATAAGAGTATATATTGGTTTTCATCTGCTTGGTTTTCATTTGAAAAAGGCTCACTAAAAAATGTCACACTCAAATCTGATCCAGAATCATTTGAGTATGGATTTGATTTTTTTGTTGCCAATTCTACCACTTTTGGTAAAAGTATCATTGGTAGGCCAGTGAAGAATAGTACTTTAACATATCTTAGGCTTGGAATTGATGGTAACATCAGATTTTACACATATTTTCTAGATGTTCAAGATGGTGTTTGGAAAGTGACATACACTCTCTTTGATAGAGATTTTGATGAGAGTGAGTGTCAATTGCCAGAGAGATGTGGGAAATTTGGGCTTTGTGAGGATAATCAATGTGTTGGTTGTCCTCTGGAGAATGGAATATTTGGTTGGAGTAATAAGTGTAGTCCTAAGCCTTTAGGAGGAGTATGCAATGCAAGTAAATTTCATTACTACAAAATTGAAGGAGTTGAGCATTATATGATCAAATACACTATTGGTGATGGAGTAAGCGAAGTTAATTGTGGAAACAAATGTACCAAGGATTGCAAGTGTGTCGGGTATTTCTACCATAAGGATGACTCAAGGTGTTGGATAACTTATGATTTGCAAACTCTTACTAGAGTGGCAAATACTACGCATGTGGGTTATATCAAGGTGCCTAATAAGCCAATTCCCTATTGGAATTCATCTAATTGGTATTCATTTGATTTTAAACAATTTACATTAGAAAAAGTCACACTCATATCTGATCCATTTGAGATTGGATTGCACTTGTTTTTTCACAATTTTGCCTCTGGTGGTATGAAAATATTTAGTGAGCCGGTAAATAATAGCACTTTAACATATCTAAGGCTAGGAATTGATGGTAACATTAAAATTCACACTTATTTCCTTGATGTACGTGATGGTGTTTGGCAAGTGATGTACACTCTCTTTGATAGAAATTTTGATGAGAGTGAGTGTCAATTGCCAGAGAGATGTGGGAAATTTGGGCTTTGTGAGGATAATCAATGTGTTGGTTGTCCATTGGAGAATGGAACATTTGCTTGGAGCAATAAGTGTAATGCTAAGCCTTTAGGAGAATGCAAAACAAGTGAGTTTCATTACTACAAAATTGAAGGAGTTGAGCATTACATGAGTAAATACACTACTGGTGATAGAGTAAGGGAAGATACTTGTGCAAATAAATGTACCAAGGATTGTAAGTGTGTTGGGTATTTCTACCACAAAGATAAGTCAAGGTGTTGGATTGCTTATGATCTTCAAACTCTTACTAGAGTTCAAAATACCACACATGTGGGTTTTATTAAGGTGCCTAATAAGTAA
Protein sequence

>Msa0255210

MSFVLLLKTSFLTILFLSFSTVIAHAIVPQNETFKFVNSGALDESIVEYGGNYRRMGIITVSFQVCFYNTTQNAFTLALRMGFETSEELFRWVWEANRGNPVDENATFSLGVDGNLVLANADGRIVWQTNTSNIGVVAFRLLSNGNMVLIDAKGSFVWQSFDHPTDTLLVDQYLKPNGPSKLVSRLSEKENVDGPYSLVLEPKGLALYYKSIYWFSSAWFSFEKGSLKNVTLKSDPESFEYGFDFFVANSTTFGKSIIGRPVKNSTLTYLRLGIDGNIRFYTYFLDVQDGVWKVTYTLFDRDFDESECQLPERCGKFGLCEDNQCVGCPLENGIFGWSNKCSPKPLGGVCNASKFHYYKIEGVEHYMIKYTIGDGVSEVNCGNKCTKDCKCVGYFYHKDDSRCWITYDLQTLTRVANTTHVGYIKVPNKPIPYWNSSNWYSFDFKQFTLEKVTLISDPFEIGLHLFFHNFASGGMKIFSEPVNNSTLTYLRLGIDGNIKIHTYFLDVRDGVWQVMYTLFDRNFDESECQLPERCGKFGLCEDNQCVGCPLENGTFAWSNKCNAKPLGECKTSEFHYYKIEGVEHYMSKYTTGDRVREDTCANKCTKDCKCVGYFYHKDKSRCWIAYDLQTLTRVQNTTHVGFIKVPNK*