AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1193910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193910 MtrunA17_Chr8g0365221 98.521 541 7 1 1 540 1 541 0.0 1100
Msa1193910 MtrunA17_Chr4g0059221 80.716 503 96 1 38 540 43 544 0.0 875
Msa1193910 MtrunA17_Chr3g0117861 75.138 543 122 2 10 540 1 542 0.0 872
Msa1193910 MtrunA17_Chr8g0390631 55.601 491 218 0 50 540 4 494 0.0 580
Msa1193910 MtrunA17_Chr6g0485301 57.645 484 205 0 57 540 19 502 0.0 578
Msa1193910 MtrunA17_Chr8g0390651 54.339 484 221 0 57 540 20 503 0.0 563
Msa1193910 MtrunA17_Chr6g0485311 55.372 484 216 0 57 540 17 500 0.0 551
Msa1193910 MtrunA17_Chr3g0118121 38.742 493 289 6 57 539 5 494 1.06e-113 346
Msa1193910 MtrunA17_Chr4g0059521 40.202 495 283 6 55 539 3 494 5.35e-112 342
Msa1193910 MtrunA17_Chr3g0118081 37.952 498 292 6 54 539 32 524 1.43e-107 332
Msa1193910 MtrunA17_Chr2g0310091 39.746 473 280 4 59 530 61 529 8.82e-104 322
Msa1193910 MtrunA17_Chr1g0149961 31.557 488 306 10 65 539 21 493 2.17e-61 210
Msa1193910 MtrunA17_Chr2g0294411 30.078 512 319 11 50 531 26 528 2.45e-60 209
Msa1193910 MtrunA17_Chr4g0074171 30.943 488 309 10 65 539 21 493 5.57e-59 203
Msa1193910 MtrunA17_Chr2g0300801 30.655 473 309 11 66 526 23 488 1.27e-58 202
Msa1193910 MtrunA17_Chr2g0279751 31.276 486 312 11 63 536 18 493 2.17e-54 191
Msa1193910 MtrunA17_Chr4g0049641 31.200 500 307 13 58 536 37 520 4.68e-53 188
Msa1193910 MtrunA17_Chr8g0372381 28.825 451 285 14 98 531 8 439 2.35e-35 138
Msa1193910 MtrunA17_Chr8g0365101 64.773 88 12 1 425 512 20 88 1.05e-30 115
Msa1193910 MtrunA17_Chr8g0384741 27.235 481 326 14 61 531 33 499 1.29e-30 125
Msa1193910 MtrunA17_Chr2g0328781 29.103 457 287 16 93 530 14 452 6.48e-30 123
Msa1193910 MtrunA17_Chr3g0124811 27.169 438 299 13 103 531 22 448 1.27e-29 122
Msa1193910 MtrunA17_Chr1g0159811 27.735 393 266 10 133 516 48 431 7.66e-28 117
Msa1193910 MtrunA17_Chr4g0032441 28.469 418 263 15 133 531 38 438 1.10e-20 95.1
Msa1193910 MtrunA17_Chr0c02g0489831 82.353 34 6 0 304 337 1 34 4.45e-13 63.9
Msa1193910 MtrunA17_Chr4g0060261 25.304 411 270 15 63 450 54 450 4.56e-12 68.6
Msa1193910 MtrunA17_Chr7g0229421 79.412 34 7 0 304 337 1 34 7.86e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193910 AT3G48000.1 76.822 535 123 1 6 540 5 538 0.0 878
Msa1193910 AT1G23800.1 81.275 502 94 0 39 540 33 534 0.0 873
Msa1193910 AT1G23800.2 82.081 346 62 0 39 384 33 378 0.0 615
Msa1193910 AT3G24503.1 55.350 486 216 1 56 540 16 501 0.0 558
Msa1193910 AT3G48170.1 41.331 496 278 6 54 539 2 494 6.61e-128 383
Msa1193910 AT1G74920.1 40.695 489 277 6 61 539 9 494 2.43e-121 366
Msa1193910 AT1G74920.2 40.900 489 271 7 61 539 9 489 9.29e-120 362
Msa1193910 AT1G79440.1 39.746 473 280 4 59 530 52 520 1.26e-102 319
Msa1193910 AT2G24270.4 31.707 492 300 11 65 539 21 493 2.07e-58 202
Msa1193910 AT2G24270.3 31.707 492 300 11 65 539 21 493 2.08e-58 202
Msa1193910 AT2G24270.1 31.707 492 300 11 65 539 21 493 2.08e-58 202
Msa1193910 AT1G54100.2 31.049 467 300 12 72 526 31 487 2.53e-58 202
Msa1193910 AT1G54100.1 31.049 467 300 12 72 526 31 487 2.53e-58 202
Msa1193910 AT3G66658.1 28.487 509 331 9 50 531 26 528 4.12e-58 203
Msa1193910 AT2G24270.2 31.707 492 300 11 65 539 61 533 6.25e-58 202
Msa1193910 AT3G66658.2 28.487 509 331 9 50 531 26 528 7.45e-58 203
Msa1193910 AT2G14170.2 31.417 487 310 12 63 536 8 483 3.46e-57 199
Msa1193910 AT2G14170.3 33.030 439 277 10 63 493 117 546 1.36e-56 199
Msa1193910 AT2G14170.1 31.417 487 310 12 63 536 117 592 1.83e-56 199
Msa1193910 AT1G44170.1 28.829 444 298 12 96 531 9 442 1.80e-38 147
Msa1193910 AT1G44170.2 28.829 444 298 12 96 531 9 442 1.80e-38 147
Msa1193910 AT1G44170.3 29.971 347 233 8 188 531 40 379 9.67e-34 133
Msa1193910 AT4G36250.1 27.912 455 297 16 93 531 2 441 3.10e-32 130
Msa1193910 AT4G34240.3 28.736 348 236 8 188 531 24 363 3.02e-28 117
Msa1193910 AT4G34240.1 28.736 348 236 8 188 531 166 505 1.99e-27 116
Msa1193910 AT4G34240.4 28.736 348 236 8 188 531 151 490 2.45e-27 116
Msa1193910 AT4G34240.2 38.065 155 91 4 188 341 166 316 4.58e-15 77.8
Msa1193910 AT5G62530.1 25.587 426 257 18 60 450 53 453 3.19e-11 66.2

Find 126 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGGTGGGAATGGTTATC+TGG 0.219323 8_1:-40752496 Msa1193910:intron
CCACCAAGCTCCAAAGTTAC+TGG 0.253675 8_1:+40750803 None:intergenic
ACAAGGGTACACAATGTTAT+TGG 0.266650 8_1:+40753435 None:intergenic
GCATCTTCGCAAACAATAAA+TGG 0.267947 8_1:+40750773 None:intergenic
AGTGGACAGGGCAGAGAAAA+AGG 0.274646 8_1:-40749465 Msa1193910:CDS
TTTACTGGTTCAACCGATAC+TGG 0.279461 8_1:-40750866 Msa1193910:CDS
CACGAACCAATTGGCGTTGC+TGG 0.282957 8_1:-40751647 Msa1193910:CDS
GTCTCACTTGAATTTCAATA+TGG 0.295168 8_1:+40749954 None:intergenic
TCTTCTCATGTTTGCTTGGA+AGG 0.308492 8_1:-40751600 Msa1193910:CDS
CTCATGTTTGCTTGGAAGGT+TGG 0.312209 8_1:-40751596 Msa1193910:CDS
GTAATATAGATCAATAAATA+TGG 0.314788 8_1:-40749363 Msa1193910:three_prime_UTR
GCACTTGAGACTTGGGATAA+TGG 0.315242 8_1:-40751891 Msa1193910:CDS
TTTGATGCTGCAATTCCTTT+TGG 0.326962 8_1:-40749501 Msa1193910:CDS
CATTGAAAGTTGGAACAGTT+TGG 0.327575 8_1:-40749542 Msa1193910:CDS
ATCTGAGCAGATTGTTCATA+TGG 0.331515 8_1:+40751864 None:intergenic
ATTGCAAAAGAAGAGATATT+TGG 0.335473 8_1:-40749988 Msa1193910:CDS
CACTTGAGACTTGGGATAAT+GGG 0.341726 8_1:-40751890 Msa1193910:CDS
TACTGTCTTCTCAAATGTTC+AGG 0.364449 8_1:-40750127 Msa1193910:intron
CTACAAATTTGCCATCGATT+AGG 0.366038 8_1:+40752388 None:intergenic
ATTGAAAGTTGGAACAGTTT+GGG 0.367636 8_1:-40749541 Msa1193910:CDS
ACTTGCACCGATGGTTTAAT+CGG 0.379104 8_1:+40752426 None:intergenic
ATTAGATCTGGCGTTGATAA+TGG 0.379386 8_1:-40750207 Msa1193910:CDS
AAAGCAATAGATGCAGTATC+AGG 0.390480 8_1:+40749190 None:intergenic
CAATCTTAAGCCAGTAACTT+TGG 0.390920 8_1:-40750813 Msa1193910:CDS
AGAGCAAACAATTCAAAGTA+TGG 0.393602 8_1:-40749621 Msa1193910:CDS
TCCCTCTTCTCATGTTTGCT+TGG 0.401686 8_1:-40751604 Msa1193910:CDS
CAGGGACAATGTTGCTGTGC+CGG 0.407196 8_1:-40750615 Msa1193910:CDS
TGGAAAAGTTGTCCTTCAAT+TGG 0.409434 8_1:-40750846 Msa1193910:CDS
AATTTCAATATGGTTTGTAC+TGG 0.414009 8_1:+40749964 None:intergenic
TGTTCTGTTCCTGACTTGAA+TGG 0.414781 8_1:+40750507 None:intergenic
TGCAATGTCTGCACATGATA+TGG 0.425470 8_1:+40751668 None:intergenic
TACCAGCATAGTAACGAATT+AGG 0.432343 8_1:+40751820 None:intergenic
AGCAATGATCATACATAAGC+TGG 0.439518 8_1:+40752092 None:intergenic
ATCTGACCAGCAACGCCAAT+TGG 0.441277 8_1:+40751641 None:intergenic
CATACATAAGCTGGAAACTT+AGG 0.447847 8_1:+40752101 None:intergenic
CAGACATTGCACGAACCAAT+TGG 0.452449 8_1:-40751656 Msa1193910:CDS
AATGGCGCTACACTTGAAAC+TGG 0.456541 8_1:-40750189 Msa1193910:CDS
CGCCTAATTCGTTACTATGC+TGG 0.456816 8_1:-40751822 Msa1193910:intron
CGAATTAGGCGAACCAGCAT+TGG 0.458512 8_1:+40751834 None:intergenic
AAATTGCAGCACTTGAGACT+TGG 0.458601 8_1:-40751899 Msa1193910:CDS
AGCAGACAATGGCGTCTGTT+CGG 0.461854 8_1:+40751532 None:intergenic
TTGTAGGCCGGACTTCCTGC+TGG 0.465059 8_1:-40751360 Msa1193910:intron
AAGCCAGTAACTTTGGAGCT+TGG 0.466523 8_1:-40750806 Msa1193910:CDS
GCAATCACTTCCCCTGTCCT+TGG 0.470122 8_1:+40752203 None:intergenic
TTGACTAGAGCATTGAAAGT+TGG 0.470715 8_1:-40749552 Msa1193910:CDS
GCACGCAAAGCATTTGATCA+AGG 0.473740 8_1:-40752131 Msa1193910:CDS
GGTTGGGCAGATAAGATTCA+TGG 0.473931 8_1:-40751713 Msa1193910:CDS
TGCTTTGCGTGCAGCTGCAA+CGG 0.475234 8_1:+40752142 None:intergenic
TTGAATATAATATCTGGCTT+TGG 0.484962 8_1:-40751333 Msa1193910:CDS
CTTTGCCTTGTTCTTTAACC+AGG 0.485383 8_1:-40750720 Msa1193910:intron
CCAGTAACTTTGGAGCTTGG+TGG 0.486152 8_1:-40750803 Msa1193910:CDS
AATGTACTTTCAGGTGGGAA+TGG 0.487239 8_1:-40752504 Msa1193910:intron
AGGGACAATGTTGCTGTGCC+GGG 0.490364 8_1:-40750614 Msa1193910:CDS
TCAAAGTATGGTCTTGCAGC+AGG 0.491649 8_1:-40749609 Msa1193910:CDS
TAGTCACATGGATGTTGATA+AGG 0.496076 8_1:-40751286 Msa1193910:intron
TCAGATTGAAATTCCAATGC+TGG 0.496455 8_1:-40751847 Msa1193910:CDS
TCTGGCTTTGGTCCAACTGC+AGG 0.500521 8_1:-40751321 Msa1193910:CDS
CCAACATTGGATCCAAGGAC+AGG 0.507885 8_1:-40752215 Msa1193910:CDS
CCTGTCCTTGGATCCAATGT+TGG 0.511997 8_1:+40752215 None:intergenic
GGTGTGTTGAATATAATATC+TGG 0.513993 8_1:-40751339 Msa1193910:CDS
CTCATCTTATATCCACCAAA+AGG 0.515568 8_1:+40749486 None:intergenic
ATATTGAAGTATATTAGATC+TGG 0.517435 8_1:-40750219 Msa1193910:CDS
CAGTAACTTTGGAGCTTGGT+GGG 0.518287 8_1:-40750802 Msa1193910:CDS
CAACACACCAGCAGGAAGTC+CGG 0.521409 8_1:+40751353 None:intergenic
CTTCTTCAATCAAAATCTCA+AGG 0.522051 8_1:-40753368 Msa1193910:CDS
GGGCTCACAGTTCCAGCTGA+TGG 0.526400 8_1:-40751692 Msa1193910:CDS
ATGCTTATCTTCTATAAAGT+AGG 0.529128 8_1:-40753460 Msa1193910:five_prime_UTR
ACGTGTGCATGAGGAGTTTG+TGG 0.530875 8_1:-40750571 Msa1193910:CDS
GTAGGAGATCCATTCAAGTC+AGG 0.532267 8_1:-40750516 Msa1193910:CDS
TCAGGTGGGAATGGTTATCT+GGG 0.532469 8_1:-40752495 Msa1193910:intron
ATTATATTCAACACACCAGC+AGG 0.533022 8_1:+40751345 None:intergenic
AATTGCAGCACTTGAGACTT+GGG 0.535187 8_1:-40751898 Msa1193910:CDS
TGGATATAAGATGAGTGGAC+AGG 0.537139 8_1:-40749478 Msa1193910:CDS
AGGAACAGAACAAGGTCCTC+AGG 0.538549 8_1:-40750496 Msa1193910:intron
ACAGATGCTCAAAGCCATGC+TGG 0.538877 8_1:+40749384 None:intergenic
ATGAGAAGAGGGAAGTTCCA+TGG 0.539559 8_1:+40751614 None:intergenic
ACATGATATGGTCCATCAGC+TGG 0.548696 8_1:+40751680 None:intergenic
GTGTGGTCGACTTGCACCGA+TGG 0.550868 8_1:+40752417 None:intergenic
GCAAGAGCAGCACCTGCAGT+TGG 0.553046 8_1:+40751309 None:intergenic
TGCTGCTCTTGCTAGTCACA+TGG 0.554143 8_1:-40751298 Msa1193910:CDS
CATTTCCAACATTGGATCCA+AGG 0.556983 8_1:-40752220 Msa1193910:CDS
CACGCAAAGCATTTGATCAA+GGG 0.557713 8_1:-40752130 Msa1193910:CDS
TACAGCACGTTTCAAAGCAC+GGG 0.560601 8_1:+40750536 None:intergenic
CAACATTGGATCCAAGGACA+GGG 0.563764 8_1:-40752214 Msa1193910:CDS
TTGATTGATTCAAGGGACCT+TGG 0.567569 8_1:-40749657 Msa1193910:intron
AGGTAGAACATTTCCAACAT+TGG 0.570539 8_1:-40752228 Msa1193910:CDS
AAGCATTTGATCAAGGGCCG+TGG 0.572236 8_1:-40752124 Msa1193910:CDS
GTGTTGCCACACGCTAATGC+TGG 0.572272 8_1:+40751572 None:intergenic
AAATTTGTAGATGCTGCTGC+TGG 0.577592 8_1:-40752375 Msa1193910:intron
CTACAGCACGTTTCAAAGCA+CGG 0.582648 8_1:+40750535 None:intergenic
TCCAAGCAAACATGAGAAGA+GGG 0.585819 8_1:+40751603 None:intergenic
AGGAGAAAGACTTGGTAGCA+AGG 0.587482 8_1:-40750166 Msa1193910:CDS
ATGTACAAATGTTCGAGACC+CGG 0.588405 8_1:+40750596 None:intergenic
AGTGATTGCTCATGTTGCTG+AGG 0.588599 8_1:-40752189 Msa1193910:CDS
TTTGGTGGATATAAGATGAG+TGG 0.589571 8_1:-40749483 Msa1193910:CDS
TTCAAGTCAGGAACAGAACA+AGG 0.593415 8_1:-40750504 Msa1193910:CDS
GGATATAAGATGAGTGGACA+GGG 0.593641 8_1:-40749477 Msa1193910:CDS
CTCTTTGAATTACCTCACCA+AGG 0.596102 8_1:+40749640 None:intergenic
CACCTTTGAAGAATCCAGCA+TGG 0.596410 8_1:-40749398 Msa1193910:CDS
GTTGGGCAGATAAGATTCAT+GGG 0.597943 8_1:-40751712 Msa1193910:CDS
TTCCAAGCAAACATGAGAAG+AGG 0.599102 8_1:+40751602 None:intergenic
GGAGAAAGACTTGGTAGCAA+GGG 0.599344 8_1:-40750165 Msa1193910:CDS
CGTGCTTTGAAACGTGCTGT+AGG 0.601175 8_1:-40750534 Msa1193910:CDS
TTTCACACACACTATTCACA+AGG 0.603941 8_1:+40753418 None:intergenic
GGTGGGAATGGTTATCTGGG+TGG 0.605677 8_1:-40752492 Msa1193910:CDS
ACCACGAGAAAACAAGGAGG+TGG 0.610351 8_1:+40753311 None:intergenic
AGCCATGCTGGATTCTTCAA+AGG 0.612311 8_1:+40749396 None:intergenic
TAATTTACCACGAGAAAACA+AGG 0.622670 8_1:+40753305 None:intergenic
TTGCTGGTCAGATCATTCCA+TGG 0.623473 8_1:-40751631 Msa1193910:CDS
GAAACTGGAGGAGAAAGACT+TGG 0.623804 8_1:-40750174 Msa1193910:CDS
TGATTCAAGGGACCTTGGTG+AGG 0.625920 8_1:-40749652 Msa1193910:intron
CACACTCAGCTCCTAATCGA+TGG 0.626153 8_1:-40752399 Msa1193910:CDS
GCTACATACAAAGCAGACAA+TGG 0.629627 8_1:+40751521 None:intergenic
TGAACATTTGAGAAGACAGT+AGG 0.631599 8_1:+40750129 None:intergenic
ACATACCTGGTTAAAGAACA+AGG 0.635925 8_1:+40750715 None:intergenic
GTGATTGCTCATGTTGCTGA+GGG 0.636914 8_1:-40752188 Msa1193910:CDS
GGCGCTACACTTGAAACTGG+AGG 0.646681 8_1:-40750186 Msa1193910:CDS
TAAGCTGGAAACTTAGGCCA+CGG 0.652576 8_1:+40752107 None:intergenic
GGAGTTTGTGGAGAAAGCAA+AGG 0.675768 8_1:-40750559 Msa1193910:CDS
TGTAGCAAAACTATTTCACG+AGG 0.677900 8_1:-40751504 Msa1193910:intron
TGTACATGAACGTGTGCATG+AGG 0.681956 8_1:-40750580 Msa1193910:CDS
AACATTGGATCCAAGGACAG+GGG 0.683175 8_1:-40752213 Msa1193910:CDS
GTTGGACCAGCATTAGCGTG+TGG 0.686548 8_1:-40751578 Msa1193910:CDS
TTCACACACACTATTCACAA+GGG 0.689461 8_1:+40753419 None:intergenic
CATCGATTAGGAGCTGAGTG+TGG 0.695634 8_1:+40752400 None:intergenic
TTTACCACGAGAAAACAAGG+AGG 0.806523 8_1:+40753308 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAATAAAATTTATTTT+TGG - chr8_1:40753460-40753479 Msa1193910:five_prime_UTR 0.0%
!!! TAATAATAAAATTTATTTTT+GGG - chr8_1:40753461-40753480 Msa1193910:five_prime_UTR 0.0%
!! TATATAAATTAAAACAAGAT+TGG + chr8_1:40751229-40751248 None:intergenic 10.0%
!! AAAAAAAGCAAATAAAAATA+GGG + chr8_1:40752990-40753009 None:intergenic 10.0%
!! TAAAAAAAGCAAATAAAAAT+AGG + chr8_1:40752991-40753010 None:intergenic 10.0%
!!! TTTTTAAGAAAATGATTTTC+TGG - chr8_1:40749526-40749545 Msa1193910:CDS 15.0%
!!! TTTTAAGAAAATGATTTTCT+GGG - chr8_1:40749527-40749546 Msa1193910:CDS 15.0%
!!! AGAAAAATAAGATAAGATTT+TGG - chr8_1:40749601-40749620 Msa1193910:CDS 15.0%
!!! CTTTTTATACAATTTTGATT+AGG - chr8_1:40750367-40750386 Msa1193910:intron 15.0%
!!! GAAGATAAAGATATATTTTA+TGG + chr8_1:40751293-40751312 None:intergenic 15.0%
!! GTAATATAGATCAATAAATA+TGG - chr8_1:40753331-40753350 Msa1193910:CDS 15.0%
!! ACAAAACAAAAAATCTCTAA+TGG - chr8_1:40749303-40749322 Msa1193910:three_prime_UTR 20.0%
!!! TTTAAGAAAATGATTTTCTG+GGG - chr8_1:40749528-40749547 Msa1193910:CDS 20.0%
!!! TTTTGAATTTGATTGATGAT+AGG - chr8_1:40749554-40749573 Msa1193910:CDS 20.0%
!!! TTTTTCTTTCATTAATTGCA+TGG - chr8_1:40749667-40749686 Msa1193910:intron 20.0%
!! TAATTTAAACATGCATTTCA+AGG + chr8_1:40749881-40749900 None:intergenic 20.0%
!! GAAATGCATGTTTAAATTAA+CGG - chr8_1:40749882-40749901 Msa1193910:intron 20.0%
!!! ATTTCAATTGGTGATTAAAA+GGG - chr8_1:40750076-40750095 Msa1193910:intron 20.0%
!!! TTCAGTTTATGATTTTCATT+AGG - chr8_1:40750103-40750122 Msa1193910:intron 20.0%
!!! TCAGTTTATGATTTTCATTA+GGG - chr8_1:40750104-40750123 Msa1193910:intron 20.0%
!! ATGATAGATTGAATATTGAA+AGG - chr8_1:40750161-40750180 Msa1193910:CDS 20.0%
!! TGATAGATTGAATATTGAAA+GGG - chr8_1:40750162-40750181 Msa1193910:CDS 20.0%
!!! TACAAAAACATTGTTTTTAG+TGG - chr8_1:40751255-40751274 Msa1193910:intron 20.0%
!! TACAAGAAAGATTACAAATT+AGG + chr8_1:40751319-40751338 None:intergenic 20.0%
!!! TAATTTGTAATCTTTCTTGT+AGG - chr8_1:40751318-40751337 Msa1193910:CDS 20.0%
!! AAAAAGAGTCATAAACATTA+AGG + chr8_1:40752382-40752401 None:intergenic 20.0%
!! ATATTGAAGTATATTAGATC+TGG - chr8_1:40752475-40752494 Msa1193910:CDS 20.0%
!! CAGATACAATTAAAAACATT+AGG + chr8_1:40752660-40752679 None:intergenic 20.0%
!!! TCACTAGAAAATTTTATAAG+AGG - chr8_1:40752931-40752950 Msa1193910:intron 20.0%
!!! ATTTAATGTTGATTGATTCA+AGG - chr8_1:40753029-40753048 Msa1193910:intron 20.0%
!!! TTTAATGTTGATTGATTCAA+GGG - chr8_1:40753030-40753049 Msa1193910:intron 20.0%
! ATGCTTATCTTCTATAAAGT+AGG - chr8_1:40749234-40749253 Msa1193910:three_prime_UTR 25.0%
! GGCTATAGTAATATGAAAAT+TGG - chr8_1:40749805-40749824 Msa1193910:intron 25.0%
! GTTTAGATTGATTGTCTATT+TGG - chr8_1:40749837-40749856 Msa1193910:intron 25.0%
!! ATTTTTGTTAAGTCCATCTT+TGG + chr8_1:40749961-40749980 None:intergenic 25.0%
! GATGTTATCTTGATTTCAAT+TGG - chr8_1:40750064-40750083 Msa1193910:intron 25.0%
!! GATTTCAATTGGTGATTAAA+AGG - chr8_1:40750075-40750094 Msa1193910:intron 25.0%
!! TTTCAATTGGTGATTAAAAG+GGG - chr8_1:40750077-40750096 Msa1193910:intron 25.0%
!! CAGTTTATGATTTTCATTAG+GGG - chr8_1:40750105-40750124 Msa1193910:intron 25.0%
!! AAAAAAATGTACTTTCAGGT+GGG - chr8_1:40750185-40750204 Msa1193910:CDS 25.0%
!!! TTTAATCGGTTTTTCATCAA+TGG + chr8_1:40750257-40750276 None:intergenic 25.0%
!!! TTTTGATTAGGAAAGAAAAG+AGG - chr8_1:40750379-40750398 Msa1193910:intron 25.0%
! AAGAAAAGAGGATTAACTAA+AGG - chr8_1:40750391-40750410 Msa1193910:intron 25.0%
! GATTAACTAAAGGAAAAGAA+GGG - chr8_1:40750401-40750420 Msa1193910:intron 25.0%
! GTTTGTCAAGTCATTATATT+TGG - chr8_1:40750656-40750675 Msa1193910:intron 25.0%
!!! TTTCTGTTTCTGTGTTTTAT+AGG - chr8_1:40750718-40750737 Msa1193910:intron 25.0%
!! TTGAATATAATATCTGGCTT+TGG - chr8_1:40751361-40751380 Msa1193910:intron 25.0%
!! ATGCTTTCAATCTAAAATGT+CGG + chr8_1:40751515-40751534 None:intergenic 25.0%
!! ATCAATGATATCCGAATTTT+AGG + chr8_1:40752040-40752059 None:intergenic 25.0%
! AAAATTCGGATATCATTGAT+TGG - chr8_1:40752040-40752059 Msa1193910:intron 25.0%
! TATTCATTGTAATTTACCTG+AGG + chr8_1:40752217-40752236 None:intergenic 25.0%
! TTTGAATCAATCTGATTGTT+TGG + chr8_1:40752442-40752461 None:intergenic 25.0%
! TTATATTCTCATCTTTGCAA+AGG - chr8_1:40752617-40752636 Msa1193910:intron 25.0%
! ATTGCAAAAGAAGAGATATT+TGG - chr8_1:40752706-40752725 Msa1193910:intron 25.0%
!! AATTTCAATATGGTTTGTAC+TGG + chr8_1:40752733-40752752 None:intergenic 25.0%
! TATAGACTACATTTGATGAA+GGG + chr8_1:40752834-40752853 None:intergenic 25.0%
! ATATAGACTACATTTGATGA+AGG + chr8_1:40752835-40752854 None:intergenic 25.0%
!!! TATAAGAGGTGTATTTTACA+AGG - chr8_1:40752945-40752964 Msa1193910:intron 25.0%
!!! ACATTTGATGTTTTTACCTT+TGG - chr8_1:40753407-40753426 Msa1193910:five_prime_UTR 25.0%
! ATTCAAGCATAAAAAACCAA+AGG + chr8_1:40753426-40753445 None:intergenic 25.0%
CTTCTTCAATCAAAATCTCA+AGG - chr8_1:40749326-40749345 Msa1193910:three_prime_UTR 30.0%
TAATTTACCACGAGAAAACA+AGG + chr8_1:40749392-40749411 None:intergenic 30.0%
TCTTTCATTAATTGCATGGT+TGG - chr8_1:40749671-40749690 Msa1193910:intron 30.0%
!!! TAAGAGTGCTACTACTTTTT+TGG - chr8_1:40749784-40749803 Msa1193910:intron 30.0%
TTTAAACATGCATTTCAAGG+TGG + chr8_1:40749878-40749897 None:intergenic 30.0%
! ATGATTTTCATTAGGGGTTT+AGG - chr8_1:40750111-40750130 Msa1193910:intron 30.0%
!!! TAGGGGTTTAGGTTTTTTAA+AGG - chr8_1:40750122-40750141 Msa1193910:intron 30.0%
AGGGAAAAAAATGTACTTTC+AGG - chr8_1:40750181-40750200 Msa1193910:CDS 30.0%
GAAAAAAATGTACTTTCAGG+TGG - chr8_1:40750184-40750203 Msa1193910:CDS 30.0%
TGAAAAACCGATTAAACCAT+CGG - chr8_1:40750261-40750280 Msa1193910:intron 30.0%
GGATTAACTAAAGGAAAAGA+AGG - chr8_1:40750400-40750419 Msa1193910:intron 30.0%
! TTTTGTGGTATCTTACCTTT+TGG - chr8_1:40750428-40750447 Msa1193910:intron 30.0%
CAGAAACAGAAAAACAAAAG+TGG + chr8_1:40750710-40750729 None:intergenic 30.0%
! GTTTCTGTGTTTTATAGGAA+AGG - chr8_1:40750723-40750742 Msa1193910:CDS 30.0%
! TGTATTTTCATATTTACCCC+AGG - chr8_1:40750960-40750979 Msa1193910:intron 30.0%
GGTGTGTTGAATATAATATC+TGG - chr8_1:40751355-40751374 Msa1193910:CDS 30.0%
!! TTTTAGATTGAAAGCATGTC+TGG - chr8_1:40751518-40751537 Msa1193910:CDS 30.0%
TGTCAAACACTAACACATAT+CGG + chr8_1:40751547-40751566 None:intergenic 30.0%
! CAAAAGATTTTCCAAGATTC+AGG + chr8_1:40751799-40751818 None:intergenic 30.0%
CAATTGTCTCTCCTAAAATT+CGG - chr8_1:40752026-40752045 Msa1193910:intron 30.0%
!! TTTGTTTTCCTAATTCGCTA+CGG - chr8_1:40752271-40752290 Msa1193910:intron 30.0%
GTCTCACTTGAATTTCAATA+TGG + chr8_1:40752743-40752762 None:intergenic 30.0%
ATCTACAAATCAAGACTCAT+TGG + chr8_1:40752765-40752784 None:intergenic 30.0%
AGAGCAAACAATTCAAAGTA+TGG - chr8_1:40753073-40753092 Msa1193910:intron 30.0%
ATTGAAAGTTGGAACAGTTT+GGG - chr8_1:40753153-40753172 Msa1193910:intron 30.0%
TAAAAACTACTTGCAAGTGA+AGG - chr8_1:40753264-40753283 Msa1193910:intron 30.0%
! ACAAGGGTACACAATGTTAT+TGG + chr8_1:40749262-40749281 None:intergenic 35.0%
TTCACACACACTATTCACAA+GGG + chr8_1:40749278-40749297 None:intergenic 35.0%
TTTCACACACACTATTCACA+AGG + chr8_1:40749279-40749298 None:intergenic 35.0%
TGTAATCTGTGTGACATGAA+AGG - chr8_1:40749636-40749655 Msa1193910:CDS 35.0%
TTGTCTATTTGGCAGAATCA+CGG - chr8_1:40749848-40749867 Msa1193910:intron 35.0%
ATTGACACTAGATCCAAAGA+TGG - chr8_1:40749945-40749964 Msa1193910:intron 35.0%
CTAAAAACTCATGTCTGTGT+CGG - chr8_1:40750033-40750052 Msa1193910:intron 35.0%
! CTACAAATTTGCCATCGATT+AGG + chr8_1:40750309-40750328 None:intergenic 35.0%
!!! GAAAAGAAGGGTTGTTTTTG+TGG - chr8_1:40750413-40750432 Msa1193910:intron 35.0%
AGGTAGAACATTTCCAACAT+TGG - chr8_1:40750466-40750485 Msa1193910:intron 35.0%
CATACATAAGCTGGAAACTT+AGG + chr8_1:40750596-40750615 None:intergenic 35.0%
AGCAATGATCATACATAAGC+TGG + chr8_1:40750605-40750624 None:intergenic 35.0%
ATCTGAGCAGATTGTTCATA+TGG + chr8_1:40750833-40750852 None:intergenic 35.0%
TCAGATTGAAATTCCAATGC+TGG - chr8_1:40750847-40750866 Msa1193910:CDS 35.0%
TACCAGCATAGTAACGAATT+AGG + chr8_1:40750877-40750896 None:intergenic 35.0%
! TTTTCATATTTACCCCAGGT+TGG - chr8_1:40750964-40750983 Msa1193910:intron 35.0%
TTTCATATTTACCCCAGGTT+GGG - chr8_1:40750965-40750984 Msa1193910:intron 35.0%
TGTAGCAAAACTATTTCACG+AGG - chr8_1:40751190-40751209 Msa1193910:intron 35.0%
TTGTAATCTTTCTTGTAGGC+CGG - chr8_1:40751322-40751341 Msa1193910:CDS 35.0%
ATTATATTCAACACACCAGC+AGG + chr8_1:40751352-40751371 None:intergenic 35.0%
TAGTCACATGGATGTTGATA+AGG - chr8_1:40751408-40751427 Msa1193910:intron 35.0%
CTATGTATCAAAGTTGTGTC+CGG - chr8_1:40751632-40751651 Msa1193910:CDS 35.0%
!!! GCGTTTTGTTTGTACATTAG+TGG - chr8_1:40751751-40751770 Msa1193910:intron 35.0%
! AAGGACAACTTTTCCAGTAT+CGG + chr8_1:40751844-40751863 None:intergenic 35.0%
TGGAAAAGTTGTCCTTCAAT+TGG - chr8_1:40751848-40751867 Msa1193910:CDS 35.0%
CAATCTTAAGCCAGTAACTT+TGG - chr8_1:40751881-40751900 Msa1193910:CDS 35.0%
GCATCTTCGCAAACAATAAA+TGG + chr8_1:40751924-40751943 None:intergenic 35.0%
ACATACCTGGTTAAAGAACA+AGG + chr8_1:40751982-40752001 None:intergenic 35.0%
TTGTGATGTTCAGATACTAG+AGG - chr8_1:40752297-40752316 Msa1193910:intron 35.0%
!! ATTAGATCTGGCGTTGATAA+TGG - chr8_1:40752487-40752506 Msa1193910:CDS 35.0%
TGAACATTTGAGAAGACAGT+AGG + chr8_1:40752568-40752587 None:intergenic 35.0%
TACTGTCTTCTCAAATGTTC+AGG - chr8_1:40752567-40752586 Msa1193910:intron 35.0%
TGTATCTGTAACAATCATCC+AGG - chr8_1:40752672-40752691 Msa1193910:intron 35.0%
! TTGATGAAGGGTGCATTAAA+GGG + chr8_1:40752822-40752841 None:intergenic 35.0%
! TTTGATGAAGGGTGCATTAA+AGG + chr8_1:40752823-40752842 None:intergenic 35.0%
TTCGCACAAATCGTCAAATT+GGG + chr8_1:40752881-40752900 None:intergenic 35.0%
TTTCGCACAAATCGTCAAAT+TGG + chr8_1:40752882-40752901 None:intergenic 35.0%
!! TTGACTAGAGCATTGAAAGT+TGG - chr8_1:40753142-40753161 Msa1193910:intron 35.0%
CATTGAAAGTTGGAACAGTT+TGG - chr8_1:40753152-40753171 Msa1193910:intron 35.0%
! TTTGATGCTGCAATTCCTTT+TGG - chr8_1:40753193-40753212 Msa1193910:intron 35.0%
CTCATCTTATATCCACCAAA+AGG + chr8_1:40753211-40753230 None:intergenic 35.0%
! TTTGGTGGATATAAGATGAG+TGG - chr8_1:40753211-40753230 Msa1193910:intron 35.0%
TTTACCACGAGAAAACAAGG+AGG + chr8_1:40749389-40749408 None:intergenic 40.0%
ATCTGTGTGACATGAAAGGA+AGG - chr8_1:40749640-40749659 Msa1193910:CDS 40.0%
!! CATGGTTGGTACTACTTTTG+TGG - chr8_1:40749685-40749704 Msa1193910:intron 40.0%
CGGTGAGATAAGTGAAATCA+CGG - chr8_1:40749902-40749921 Msa1193910:intron 40.0%
TGAGATAAGTGAAATCACGG+TGG - chr8_1:40749905-40749924 Msa1193910:intron 40.0%
!!! CACAGACATGAGTTTTTAGC+AGG + chr8_1:40750032-40750051 None:intergenic 40.0%
! AATGTACTTTCAGGTGGGAA+TGG - chr8_1:40750190-40750209 Msa1193910:CDS 40.0%
! ACTTGCACCGATGGTTTAAT+CGG + chr8_1:40750271-40750290 None:intergenic 40.0%
AAATTTGTAGATGCTGCTGC+TGG - chr8_1:40750319-40750338 Msa1193910:intron 40.0%
GATCACAGACAAACTCCAAA+AGG + chr8_1:40750446-40750465 None:intergenic 40.0%
! TTTGGAGTTTGTCTGTGATC+AGG - chr8_1:40750446-40750465 Msa1193910:intron 40.0%
CATTTCCAACATTGGATCCA+AGG - chr8_1:40750474-40750493 Msa1193910:intron 40.0%
! CACGCAAAGCATTTGATCAA+GGG - chr8_1:40750564-40750583 Msa1193910:CDS 40.0%
AAATTGCAGCACTTGAGACT+TGG - chr8_1:40750795-40750814 Msa1193910:CDS 40.0%
AATTGCAGCACTTGAGACTT+GGG - chr8_1:40750796-40750815 Msa1193910:CDS 40.0%
CACTTGAGACTTGGGATAAT+GGG - chr8_1:40750804-40750823 Msa1193910:CDS 40.0%
GTTGGGCAGATAAGATTCAT+GGG - chr8_1:40750982-40751001 Msa1193910:intron 40.0%
TGCAATGTCTGCACATGATA+TGG + chr8_1:40751029-40751048 None:intergenic 40.0%
TCCAAGCAAACATGAGAAGA+GGG + chr8_1:40751094-40751113 None:intergenic 40.0%
TTCCAAGCAAACATGAGAAG+AGG + chr8_1:40751095-40751114 None:intergenic 40.0%
TCTTCTCATGTTTGCTTGGA+AGG - chr8_1:40751094-40751113 Msa1193910:intron 40.0%
GCTACATACAAAGCAGACAA+TGG + chr8_1:40751176-40751195 None:intergenic 40.0%
! CAATCTAAAATGTCGGTGCA+TGG + chr8_1:40751508-40751527 None:intergenic 40.0%
TGAAACACTAACACAGACAC+CGG + chr8_1:40751654-40751673 None:intergenic 40.0%
! TCGATCTTTGTTTCGTGTAG+AGG - chr8_1:40751711-40751730 Msa1193910:CDS 40.0%
! TCTAGAACAAGCCTGAATCT+TGG - chr8_1:40751785-40751804 Msa1193910:intron 40.0%
! CTTTTGCAGCTTGCATTTAC+TGG - chr8_1:40751813-40751832 Msa1193910:intron 40.0%
!! TTTACTGGTTCAACCGATAC+TGG - chr8_1:40751828-40751847 Msa1193910:CDS 40.0%
!! TGCTTTTAGCTGCCAATTGA+AGG + chr8_1:40751863-40751882 None:intergenic 40.0%
! CTTTGCCTTGTTCTTTAACC+AGG - chr8_1:40751974-40751993 Msa1193910:intron 40.0%
GAACTCTGATTGTACATACC+TGG + chr8_1:40751995-40752014 None:intergenic 40.0%
ATGTACAAATGTTCGAGACC+CGG + chr8_1:40752101-40752120 None:intergenic 40.0%
! TGTTCTGTTCCTGACTTGAA+TGG + chr8_1:40752190-40752209 None:intergenic 40.0%
TTCAAGTCAGGAACAGAACA+AGG - chr8_1:40752190-40752209 Msa1193910:CDS 40.0%
TCTGTAACAATCATCCAGGA+TGG - chr8_1:40752676-40752695 Msa1193910:intron 40.0%
! TTGATTGATTCAAGGGACCT+TGG - chr8_1:40753037-40753056 Msa1193910:intron 40.0%
CTCTTTGAATTACCTCACCA+AGG + chr8_1:40753057-40753076 None:intergenic 40.0%
TGGATATAAGATGAGTGGAC+AGG - chr8_1:40753216-40753235 Msa1193910:intron 40.0%
GGATATAAGATGAGTGGACA+GGG - chr8_1:40753217-40753236 Msa1193910:intron 40.0%
! AAACTCATGTCTGTGTCGGT+TGG - chr8_1:40750037-40750056 Msa1193910:intron 45.0%
TTCAGGTGGGAATGGTTATC+TGG - chr8_1:40750198-40750217 Msa1193910:CDS 45.0%
TCAGGTGGGAATGGTTATCT+GGG - chr8_1:40750199-40750218 Msa1193910:CDS 45.0%
CAACATTGGATCCAAGGACA+GGG - chr8_1:40750480-40750499 Msa1193910:intron 45.0%
AACATTGGATCCAAGGACAG+GGG - chr8_1:40750481-40750500 Msa1193910:intron 45.0%
AGTGATTGCTCATGTTGCTG+AGG - chr8_1:40750505-40750524 Msa1193910:CDS 45.0%
GTGATTGCTCATGTTGCTGA+GGG - chr8_1:40750506-40750525 Msa1193910:CDS 45.0%
! GCACGCAAAGCATTTGATCA+AGG - chr8_1:40750563-40750582 Msa1193910:CDS 45.0%
TAAGCTGGAAACTTAGGCCA+CGG + chr8_1:40750590-40750609 None:intergenic 45.0%
GCACTTGAGACTTGGGATAA+TGG - chr8_1:40750803-40750822 Msa1193910:CDS 45.0%
CGCCTAATTCGTTACTATGC+TGG - chr8_1:40750872-40750891 Msa1193910:CDS 45.0%
AATCTTATCTGCCCAACCTG+GGG + chr8_1:40750979-40750998 None:intergenic 45.0%
GAATCTTATCTGCCCAACCT+GGG + chr8_1:40750980-40750999 None:intergenic 45.0%
TGAATCTTATCTGCCCAACC+TGG + chr8_1:40750981-40751000 None:intergenic 45.0%
GGTTGGGCAGATAAGATTCA+TGG - chr8_1:40750981-40751000 Msa1193910:intron 45.0%
ACATGATATGGTCCATCAGC+TGG + chr8_1:40751017-40751036 None:intergenic 45.0%
CAGACATTGCACGAACCAAT+TGG - chr8_1:40751038-40751057 Msa1193910:intron 45.0%
TTGCTGGTCAGATCATTCCA+TGG - chr8_1:40751063-40751082 Msa1193910:intron 45.0%
ATGAGAAGAGGGAAGTTCCA+TGG + chr8_1:40751083-40751102 None:intergenic 45.0%
TCCCTCTTCTCATGTTTGCT+TGG - chr8_1:40751090-40751109 Msa1193910:intron 45.0%
CTCATGTTTGCTTGGAAGGT+TGG - chr8_1:40751098-40751117 Msa1193910:intron 45.0%
!! AAGCCAGTAACTTTGGAGCT+TGG - chr8_1:40751888-40751907 Msa1193910:CDS 45.0%
!! CAGTAACTTTGGAGCTTGGT+GGG - chr8_1:40751892-40751911 Msa1193910:CDS 45.0%
TGGCGTTCTTTCTGACATTC+AGG - chr8_1:40752060-40752079 Msa1193910:intron 45.0%
GGCGTTCTTTCTGACATTCA+GGG - chr8_1:40752061-40752080 Msa1193910:intron 45.0%
TGTACATGAACGTGTGCATG+AGG - chr8_1:40752114-40752133 Msa1193910:CDS 45.0%
GGAGTTTGTGGAGAAAGCAA+AGG - chr8_1:40752135-40752154 Msa1193910:CDS 45.0%
TACAGCACGTTTCAAAGCAC+GGG + chr8_1:40752161-40752180 None:intergenic 45.0%
CTACAGCACGTTTCAAAGCA+CGG + chr8_1:40752162-40752181 None:intergenic 45.0%
GTAGGAGATCCATTCAAGTC+AGG - chr8_1:40752178-40752197 Msa1193910:CDS 45.0%
CACAATGACCGTAGCGAATT+AGG + chr8_1:40752282-40752301 None:intergenic 45.0%
AATGGCGCTACACTTGAAAC+TGG - chr8_1:40752505-40752524 Msa1193910:intron 45.0%
GAAACTGGAGGAGAAAGACT+TGG - chr8_1:40752520-40752539 Msa1193910:intron 45.0%
! AGGAGAAAGACTTGGTAGCA+AGG - chr8_1:40752528-40752547 Msa1193910:intron 45.0%
! GGAGAAAGACTTGGTAGCAA+GGG - chr8_1:40752529-40752548 Msa1193910:intron 45.0%
GTGATGCTCAGTTCTCAATC+TGG + chr8_1:40752915-40752934 None:intergenic 45.0%
! TCAAAGTATGGTCTTGCAGC+AGG - chr8_1:40753085-40753104 Msa1193910:intron 45.0%
! GATGCTGCAATTCCTTTTGG+TGG - chr8_1:40753196-40753215 Msa1193910:intron 45.0%
! CACCTTTGAAGAATCCAGCA+TGG - chr8_1:40753296-40753315 Msa1193910:intron 45.0%
AGCCATGCTGGATTCTTCAA+AGG + chr8_1:40753301-40753320 None:intergenic 45.0%
!!! AAATTTTATTATTAATATAC+TGG + chr8_1:40753455-40753474 None:intergenic 5.0%
!!! TCCACCTCCTTGTTTTCTCG+TGG - chr8_1:40749382-40749401 Msa1193910:exon 50.0%
ACCACGAGAAAACAAGGAGG+TGG + chr8_1:40749386-40749405 None:intergenic 50.0%
! CATCGATTAGGAGCTGAGTG+TGG + chr8_1:40750297-40750316 None:intergenic 50.0%
CACACTCAGCTCCTAATCGA+TGG - chr8_1:40750295-40750314 Msa1193910:intron 50.0%
CCTGTCCTTGGATCCAATGT+TGG + chr8_1:40750482-40750501 None:intergenic 50.0%
CCAACATTGGATCCAAGGAC+AGG - chr8_1:40750479-40750498 Msa1193910:intron 50.0%
AAGCATTTGATCAAGGGCCG+TGG - chr8_1:40750570-40750589 Msa1193910:CDS 50.0%
CGAATTAGGCGAACCAGCAT+TGG + chr8_1:40750863-40750882 None:intergenic 50.0%
CGTTACTATGCTGGTACGTG+CGG - chr8_1:40750881-40750900 Msa1193910:intron 50.0%
ATCTGACCAGCAACGCCAAT+TGG + chr8_1:40751056-40751075 None:intergenic 50.0%
AGCAGACAATGGCGTCTGTT+CGG + chr8_1:40751165-40751184 None:intergenic 50.0%
TGCTGCTCTTGCTAGTCACA+TGG - chr8_1:40751396-40751415 Msa1193910:intron 50.0%
CCACCAAGCTCCAAAGTTAC+TGG + chr8_1:40751894-40751913 None:intergenic 50.0%
!! CCAGTAACTTTGGAGCTTGG+TGG - chr8_1:40751891-40751910 Msa1193910:CDS 50.0%
ACGTGTGCATGAGGAGTTTG+TGG - chr8_1:40752123-40752142 Msa1193910:CDS 50.0%
!! CGTGCTTTGAAACGTGCTGT+AGG - chr8_1:40752160-40752179 Msa1193910:CDS 50.0%
AGGAACAGAACAAGGTCCTC+AGG - chr8_1:40752198-40752217 Msa1193910:CDS 50.0%
TTGCAATCTGCATGCCATCC+TGG + chr8_1:40752693-40752712 None:intergenic 50.0%
TGATTCAAGGGACCTTGGTG+AGG - chr8_1:40753042-40753061 Msa1193910:intron 50.0%
AGTGGACAGGGCAGAGAAAA+AGG - chr8_1:40753229-40753248 Msa1193910:intron 50.0%
ACAGATGCTCAAAGCCATGC+TGG + chr8_1:40753313-40753332 None:intergenic 50.0%
GGTGGGAATGGTTATCTGGG+TGG - chr8_1:40750202-40750221 Msa1193910:CDS 55.0%
GCAATCACTTCCCCTGTCCT+TGG + chr8_1:40750494-40750513 None:intergenic 55.0%
TGCTTTGCGTGCAGCTGCAA+CGG + chr8_1:40750555-40750574 None:intergenic 55.0%
CACGAACCAATTGGCGTTGC+TGG - chr8_1:40751047-40751066 Msa1193910:intron 55.0%
GTTGGACCAGCATTAGCGTG+TGG - chr8_1:40751116-40751135 Msa1193910:intron 55.0%
GTGTTGCCACACGCTAATGC+TGG + chr8_1:40751125-40751144 None:intergenic 55.0%
CAACACACCAGCAGGAAGTC+CGG + chr8_1:40751344-40751363 None:intergenic 55.0%
!! TCTGGCTTTGGTCCAACTGC+AGG - chr8_1:40751373-40751392 Msa1193910:intron 55.0%
CAGGGACAATGTTGCTGTGC+CGG - chr8_1:40752079-40752098 Msa1193910:intron 55.0%
AGGGACAATGTTGCTGTGCC+GGG - chr8_1:40752080-40752099 Msa1193910:intron 55.0%
GGCGCTACACTTGAAACTGG+AGG - chr8_1:40752508-40752527 Msa1193910:intron 55.0%
!! GTGTGGTCGACTTGCACCGA+TGG + chr8_1:40750280-40750299 None:intergenic 60.0%
CTATGCTGGTACGTGCGGTG+TGG - chr8_1:40750886-40750905 Msa1193910:intron 60.0%
GGGCTCACAGTTCCAGCTGA+TGG - chr8_1:40751002-40751021 Msa1193910:intron 60.0%
TTGTAGGCCGGACTTCCTGC+TGG - chr8_1:40751334-40751353 Msa1193910:CDS 60.0%
GCAAGAGCAGCACCTGCAGT+TGG + chr8_1:40751388-40751407 None:intergenic 60.0%
GCTGGTACGTGCGGTGTGGA+AGG - chr8_1:40750890-40750909 Msa1193910:intron 65.0%
GGTACGTGCGGTGTGGAAGG+TGG - chr8_1:40750893-40750912 Msa1193910:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 40749202 40753514 40749202 ID=Msa1193910;Name=Msa1193910
chr8_1 mRNA 40749202 40753514 40749202 ID=Msa1193910-mRNA-1;Parent=Msa1193910;Name=Msa1193910-mRNA-1;_AED=0.10;_eAED=0.10;_QI=120|1|1|1|1|1|11|190|540
chr8_1 exon 40749202 40749665 40749202 ID=Msa1193910-mRNA-1:exon:13177;Parent=Msa1193910-mRNA-1
chr8_1 exon 40749961 40750022 40749961 ID=Msa1193910-mRNA-1:exon:13176;Parent=Msa1193910-mRNA-1
chr8_1 exon 40750128 40750265 40750128 ID=Msa1193910-mRNA-1:exon:13175;Parent=Msa1193910-mRNA-1
chr8_1 exon 40750497 40750634 40750497 ID=Msa1193910-mRNA-1:exon:13174;Parent=Msa1193910-mRNA-1
chr8_1 exon 40750721 40750894 40750721 ID=Msa1193910-mRNA-1:exon:13173;Parent=Msa1193910-mRNA-1
chr8_1 exon 40751287 40751376 40751287 ID=Msa1193910-mRNA-1:exon:13172;Parent=Msa1193910-mRNA-1
chr8_1 exon 40751505 40751734 40751505 ID=Msa1193910-mRNA-1:exon:13171;Parent=Msa1193910-mRNA-1
chr8_1 exon 40751823 40751976 40751823 ID=Msa1193910-mRNA-1:exon:13170;Parent=Msa1193910-mRNA-1
chr8_1 exon 40752106 40752248 40752106 ID=Msa1193910-mRNA-1:exon:13169;Parent=Msa1193910-mRNA-1
chr8_1 exon 40752376 40752513 40752376 ID=Msa1193910-mRNA-1:exon:13168;Parent=Msa1193910-mRNA-1
chr8_1 exon 40753313 40753514 40753313 ID=Msa1193910-mRNA-1:exon:13167;Parent=Msa1193910-mRNA-1
chr8_1 five_prime_UTR 40753395 40753514 40753395 ID=Msa1193910-mRNA-1:five_prime_utr;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40753313 40753394 40753313 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40752376 40752513 40752376 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40752106 40752248 40752106 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40751823 40751976 40751823 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40751505 40751734 40751505 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40751287 40751376 40751287 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40750721 40750894 40750721 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40750497 40750634 40750497 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40750128 40750265 40750128 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40749961 40750022 40749961 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 CDS 40749392 40749665 40749392 ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1
chr8_1 three_prime_UTR 40749202 40749391 40749202 ID=Msa1193910-mRNA-1:three_prime_utr;Parent=Msa1193910-mRNA-1
Gene Sequence

>Msa1193910

ATGGCTTCTTCAATCAAAATCTCAAGGCTTATTTCTCGATCATTTTCTTCTGCTTCTTCTTCCACCTCCTTGTTTTCTCGTGGTGGGAATGGTTATCTGGGTGGATTACTCTCTAAATACAGCACTGCTGCTGCCATTGATGAAAAACCGATTAAACCATCGGTGCAAGTCGACCACACTCAGCTCCTAATCGATGGCAAATTTGTAGATGCTGCTGCTGGTAGAACATTTCCAACATTGGATCCAAGGACAGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATAGAGCCGTTGCAGCTGCACGCAAAGCATTTGATCAAGGGCCGTGGCCTAAGTTTCCAGCTTATGAAAGGCAAAAGATAATGTTGCGTGCTGCTGATTTGATTGAAAAGCATAACGATGAAATTGCAGCACTTGAGACTTGGGATAATGGGAAACCATATGAACAATCTGCTCAGATTGAAATTCCAATGCTGGTTCGCCTAATTCGTTACTATGCTGGTTGGGCAGATAAGATTCATGGGCTCACAGTTCCAGCTGATGGACCATATCATGTGCAGACATTGCACGAACCAATTGGCGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTTGGACCAGCATTAGCGTGTGGCAACACTGTCGTTCTAAAAACAGCCGAACAGACGCCATTGTCTGCTTTGTATGTAGCAAAACTATTTCACGAGGCCGGACTTCCTGCTGGTGTGTTGAATATAATATCTGGCTTTGGTCCAACTGCAGGTGCTGCTCTTGCTAGTCACATGGATGTTGATAAGCTTGCATTTACTGGTTCAACCGATACTGGAAAAGTTGTCCTTCAATTGGCAGCTAAAAGCAATCTTAAGCCAGTAACTTTGGAGCTTGGTGGGAAATCTCCATTTATTGTTTGCGAAGATGCTGATATAGATGAAGCTGTTGAGCTAGCACACTTTGCCTTGTTCTTTAACCAGGGACAATGTTGCTGTGCCGGGTCTCGAACATTTGTACATGAACGTGTGCATGAGGAGTTTGTGGAGAAAGCAAAGGCCCGTGCTTTGAAACGTGCTGTAGGAGATCCATTCAAGTCAGGAACAGAACAAGGTCCTCAGATTGATTCAAAGCAATTTGAGAAAATATTGAAGTATATTAGATCTGGCGTTGATAATGGCGCTACACTTGAAACTGGAGGAGAAAGACTTGGTAGCAAGGGCTACTATATTCAGCCTACTGTCTTCTCAAATGTTCAGGATGGCATGCAGATTGCAAAAGAAGAGATATTTGGTCCAGTACAAACCATATTGAAATTCAAGGACCTTGGTGAGGTAATTCAAAGAGCAAACAATTCAAAGTATGGTCTTGCAGCAGGAGTTTTCACAAAGAACATAGACACTGCAAATACTTTGACTAGAGCATTGAAAGTTGGAACAGTTTGGGTAAATTGCTTTGATACATTTGATGCTGCAATTCCTTTTGGTGGATATAAGATGAGTGGACAGGGCAGAGAAAAAGGAGAATACAGTCTTAAAAACTACTTGCAAGTGAAGGCTGTTGTTACACCTTTGAAGAATCCAGCATGGCTTTGA

Protein sequence

>Msa1193910

MASSIKISRLISRSFSSASSSTSLFSRGGNGYLGGLLSKYSTAAAIDEKPIKPSVQVDHTQLLIDGKFVDAAAGRTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDQGPWPKFPAYERQKIMLRAADLIEKHNDEIAALETWDNGKPYEQSAQIEIPMLVRLIRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALYVAKLFHEAGLPAGVLNIISGFGPTAGAALASHMDVDKLAFTGSTDTGKVVLQLAAKSNLKPVTLELGGKSPFIVCEDADIDEAVELAHFALFFNQGQCCCAGSRTFVHERVHEEFVEKAKARALKRAVGDPFKSGTEQGPQIDSKQFEKILKYIRSGVDNGATLETGGERLGSKGYYIQPTVFSNVQDGMQIAKEEIFGPVQTILKFKDLGEVIQRANNSKYGLAAGVFTKNIDTANTLTRALKVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL*