Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193910 | XP_024627803.1 | 98.521 | 541 | 7 | 1 | 1 | 540 | 1 | 541 | 0.0 | 1100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193910 | sp|C7A2A0|BALDH_ANTMA | 81.461 | 534 | 96 | 3 | 10 | 540 | 1 | 534 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030050 | Msa1193910 | 0.802639 | 5.099508e-49 | -8.615850e-47 |
| Msa0037180 | Msa1193910 | 0.832944 | 7.077660e-56 | -8.615850e-47 |
| Msa0081610 | Msa1193910 | -0.802666 | 5.035092e-49 | -8.615850e-47 |
| Msa0092220 | Msa1193910 | 0.845958 | 2.934021e-59 | -8.615850e-47 |
| Msa0621670 | Msa1193910 | -0.820524 | 6.555665e-53 | -8.615850e-47 |
| Msa0682110 | Msa1193910 | 0.808983 | 2.369028e-50 | -8.615850e-47 |
| Msa0682160 | Msa1193910 | 0.828058 | 1.110288e-54 | -8.615850e-47 |
| Msa0683840 | Msa1193910 | 0.804896 | 1.733162e-49 | -8.615850e-47 |
| Msa0698280 | Msa1193910 | 0.806480 | 8.060774e-50 | -8.615850e-47 |
| Msa0737030 | Msa1193910 | 0.809068 | 2.271810e-50 | -8.615850e-47 |
| Msa0138990 | Msa1193910 | -0.807496 | 4.913922e-50 | -8.615850e-47 |
| Msa0173950 | Msa1193910 | -0.814286 | 1.664944e-51 | -8.615850e-47 |
| Msa0177320 | Msa1193910 | 0.834856 | 2.352671e-56 | -8.615850e-47 |
| Msa0189680 | Msa1193910 | 0.802328 | 5.910030e-49 | -8.615850e-47 |
| Msa0216150 | Msa1193910 | -0.811969 | 5.364916e-51 | -8.615850e-47 |
| Msa0231990 | Msa1193910 | 0.818851 | 1.580076e-52 | -8.615850e-47 |
| Msa0232060 | Msa1193910 | 0.809617 | 1.732227e-50 | -8.615850e-47 |
| Msa0389080 | Msa1193910 | -0.822724 | 2.032536e-53 | -8.615850e-47 |
| Msa0458220 | Msa1193910 | 0.817458 | 3.263872e-52 | -8.615850e-47 |
| Msa1055520 | Msa1193910 | -0.810446 | 1.148255e-50 | -8.615850e-47 |
| Msa0247030 | Msa1193910 | 0.835549 | 1.573159e-56 | -8.615850e-47 |
| Msa0255210 | Msa1193910 | 0.803448 | 3.468772e-49 | -8.615850e-47 |
| Msa0285420 | Msa1193910 | 0.809043 | 2.299765e-50 | -8.615850e-47 |
| Msa0294200 | Msa1193910 | 0.804302 | 2.305636e-49 | -8.615850e-47 |
| Msa0318490 | Msa1193910 | 0.803226 | 3.856438e-49 | -8.615850e-47 |
| Msa0324220 | Msa1193910 | 0.804857 | 1.766393e-49 | -8.615850e-47 |
| Msa0326710 | Msa1193910 | 0.805158 | 1.527694e-49 | -8.615850e-47 |
| Msa0333770 | Msa1193910 | 0.809385 | 1.941911e-50 | -8.615850e-47 |
| Msa0334450 | Msa1193910 | -0.803322 | 3.684414e-49 | -8.615850e-47 |
| Msa1129120 | Msa1193910 | -0.825891 | 3.661032e-54 | -8.615850e-47 |
| Msa1173150 | Msa1193910 | 0.801517 | 8.675843e-49 | -8.615850e-47 |
| Msa1181370 | Msa1193910 | -0.803997 | 2.668631e-49 | -8.615850e-47 |
| Msa1193910 | Msa1202470 | 0.821850 | 3.242809e-53 | -8.615850e-47 |
| Msa1193910 | Msa1249600 | 0.926789 | 2.891230e-91 | -8.615850e-47 |
| Msa1193910 | Msa1254910 | 0.807497 | 4.910899e-50 | -8.615850e-47 |
| Msa1193910 | Msa1265020 | 0.817468 | 3.246480e-52 | -8.615850e-47 |
| Msa1193910 | Msa1273620 | -0.821715 | 3.484050e-53 | -8.615850e-47 |
| Msa1193910 | Msa1284020 | 0.814861 | 1.241971e-51 | -8.615850e-47 |
| Msa1193910 | Msa1290900 | 0.960656 | 8.359204e-119 | -8.615850e-47 |
| Msa1193910 | Msa1304790 | 0.816982 | 4.175882e-52 | -8.615850e-47 |
| Msa1193910 | Msa1323070 | 0.862447 | 5.036963e-64 | -8.615850e-47 |
| Msa1193910 | Msa1326180 | 0.972990 | 1.124104e-135 | -8.615850e-47 |
| Msa1193910 | Msa1337850 | 0.803466 | 3.439563e-49 | -8.615850e-47 |
| Msa1193910 | Msa1343280 | 0.805502 | 1.294248e-49 | -8.615850e-47 |
| Msa1193910 | Msa1383820 | 0.804773 | 1.839184e-49 | -8.615850e-47 |
| Msa1193910 | Msa1388720 | -0.821981 | 3.023444e-53 | -8.615850e-47 |
| Msa1193910 | Msa1432730 | -0.801097 | 1.057326e-48 | -8.615850e-47 |
| Msa1193910 | Msa1439250 | 0.850891 | 1.266009e-60 | -8.615850e-47 |
| Msa1193910 | Msa1439270 | 0.804743 | 1.866158e-49 | -8.615850e-47 |
| Msa1193910 | Msa1453430 | 0.814791 | 1.287205e-51 | -8.615850e-47 |
| Msa0504700 | Msa1193910 | 0.829777 | 4.256324e-55 | -8.615850e-47 |
| Msa0563440 | Msa1193910 | 0.817964 | 2.508723e-52 | -8.615850e-47 |
| Msa0856020 | Msa1193910 | 0.807602 | 4.666308e-50 | -8.615850e-47 |
| Msa0931550 | Msa1193910 | -0.801175 | 1.019443e-48 | -8.615850e-47 |
| Msa0969380 | Msa1193910 | 0.825731 | 3.995532e-54 | -8.615850e-47 |
| Msa0969720 | Msa1193910 | 0.824833 | 6.515549e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193910 | MtrunA17_Chr8g0365221 | 98.521 | 541 | 7 | 1 | 1 | 540 | 1 | 541 | 0.0 | 1100 |
| Msa1193910 | MtrunA17_Chr4g0059221 | 80.716 | 503 | 96 | 1 | 38 | 540 | 43 | 544 | 0.0 | 875 |
| Msa1193910 | MtrunA17_Chr3g0117861 | 75.138 | 543 | 122 | 2 | 10 | 540 | 1 | 542 | 0.0 | 872 |
| Msa1193910 | MtrunA17_Chr8g0390631 | 55.601 | 491 | 218 | 0 | 50 | 540 | 4 | 494 | 0.0 | 580 |
| Msa1193910 | MtrunA17_Chr6g0485301 | 57.645 | 484 | 205 | 0 | 57 | 540 | 19 | 502 | 0.0 | 578 |
| Msa1193910 | MtrunA17_Chr8g0390651 | 54.339 | 484 | 221 | 0 | 57 | 540 | 20 | 503 | 0.0 | 563 |
| Msa1193910 | MtrunA17_Chr6g0485311 | 55.372 | 484 | 216 | 0 | 57 | 540 | 17 | 500 | 0.0 | 551 |
| Msa1193910 | MtrunA17_Chr3g0118121 | 38.742 | 493 | 289 | 6 | 57 | 539 | 5 | 494 | 1.06e-113 | 346 |
| Msa1193910 | MtrunA17_Chr4g0059521 | 40.202 | 495 | 283 | 6 | 55 | 539 | 3 | 494 | 5.35e-112 | 342 |
| Msa1193910 | MtrunA17_Chr3g0118081 | 37.952 | 498 | 292 | 6 | 54 | 539 | 32 | 524 | 1.43e-107 | 332 |
| Msa1193910 | MtrunA17_Chr2g0310091 | 39.746 | 473 | 280 | 4 | 59 | 530 | 61 | 529 | 8.82e-104 | 322 |
| Msa1193910 | MtrunA17_Chr1g0149961 | 31.557 | 488 | 306 | 10 | 65 | 539 | 21 | 493 | 2.17e-61 | 210 |
| Msa1193910 | MtrunA17_Chr2g0294411 | 30.078 | 512 | 319 | 11 | 50 | 531 | 26 | 528 | 2.45e-60 | 209 |
| Msa1193910 | MtrunA17_Chr4g0074171 | 30.943 | 488 | 309 | 10 | 65 | 539 | 21 | 493 | 5.57e-59 | 203 |
| Msa1193910 | MtrunA17_Chr2g0300801 | 30.655 | 473 | 309 | 11 | 66 | 526 | 23 | 488 | 1.27e-58 | 202 |
| Msa1193910 | MtrunA17_Chr2g0279751 | 31.276 | 486 | 312 | 11 | 63 | 536 | 18 | 493 | 2.17e-54 | 191 |
| Msa1193910 | MtrunA17_Chr4g0049641 | 31.200 | 500 | 307 | 13 | 58 | 536 | 37 | 520 | 4.68e-53 | 188 |
| Msa1193910 | MtrunA17_Chr8g0372381 | 28.825 | 451 | 285 | 14 | 98 | 531 | 8 | 439 | 2.35e-35 | 138 |
| Msa1193910 | MtrunA17_Chr8g0365101 | 64.773 | 88 | 12 | 1 | 425 | 512 | 20 | 88 | 1.05e-30 | 115 |
| Msa1193910 | MtrunA17_Chr8g0384741 | 27.235 | 481 | 326 | 14 | 61 | 531 | 33 | 499 | 1.29e-30 | 125 |
| Msa1193910 | MtrunA17_Chr2g0328781 | 29.103 | 457 | 287 | 16 | 93 | 530 | 14 | 452 | 6.48e-30 | 123 |
| Msa1193910 | MtrunA17_Chr3g0124811 | 27.169 | 438 | 299 | 13 | 103 | 531 | 22 | 448 | 1.27e-29 | 122 |
| Msa1193910 | MtrunA17_Chr1g0159811 | 27.735 | 393 | 266 | 10 | 133 | 516 | 48 | 431 | 7.66e-28 | 117 |
| Msa1193910 | MtrunA17_Chr4g0032441 | 28.469 | 418 | 263 | 15 | 133 | 531 | 38 | 438 | 1.10e-20 | 95.1 |
| Msa1193910 | MtrunA17_Chr0c02g0489831 | 82.353 | 34 | 6 | 0 | 304 | 337 | 1 | 34 | 4.45e-13 | 63.9 |
| Msa1193910 | MtrunA17_Chr4g0060261 | 25.304 | 411 | 270 | 15 | 63 | 450 | 54 | 450 | 4.56e-12 | 68.6 |
| Msa1193910 | MtrunA17_Chr7g0229421 | 79.412 | 34 | 7 | 0 | 304 | 337 | 1 | 34 | 7.86e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193910 | AT3G48000.1 | 76.822 | 535 | 123 | 1 | 6 | 540 | 5 | 538 | 0.0 | 878 |
| Msa1193910 | AT1G23800.1 | 81.275 | 502 | 94 | 0 | 39 | 540 | 33 | 534 | 0.0 | 873 |
| Msa1193910 | AT1G23800.2 | 82.081 | 346 | 62 | 0 | 39 | 384 | 33 | 378 | 0.0 | 615 |
| Msa1193910 | AT3G24503.1 | 55.350 | 486 | 216 | 1 | 56 | 540 | 16 | 501 | 0.0 | 558 |
| Msa1193910 | AT3G48170.1 | 41.331 | 496 | 278 | 6 | 54 | 539 | 2 | 494 | 6.61e-128 | 383 |
| Msa1193910 | AT1G74920.1 | 40.695 | 489 | 277 | 6 | 61 | 539 | 9 | 494 | 2.43e-121 | 366 |
| Msa1193910 | AT1G74920.2 | 40.900 | 489 | 271 | 7 | 61 | 539 | 9 | 489 | 9.29e-120 | 362 |
| Msa1193910 | AT1G79440.1 | 39.746 | 473 | 280 | 4 | 59 | 530 | 52 | 520 | 1.26e-102 | 319 |
| Msa1193910 | AT2G24270.4 | 31.707 | 492 | 300 | 11 | 65 | 539 | 21 | 493 | 2.07e-58 | 202 |
| Msa1193910 | AT2G24270.3 | 31.707 | 492 | 300 | 11 | 65 | 539 | 21 | 493 | 2.08e-58 | 202 |
| Msa1193910 | AT2G24270.1 | 31.707 | 492 | 300 | 11 | 65 | 539 | 21 | 493 | 2.08e-58 | 202 |
| Msa1193910 | AT1G54100.2 | 31.049 | 467 | 300 | 12 | 72 | 526 | 31 | 487 | 2.53e-58 | 202 |
| Msa1193910 | AT1G54100.1 | 31.049 | 467 | 300 | 12 | 72 | 526 | 31 | 487 | 2.53e-58 | 202 |
| Msa1193910 | AT3G66658.1 | 28.487 | 509 | 331 | 9 | 50 | 531 | 26 | 528 | 4.12e-58 | 203 |
| Msa1193910 | AT2G24270.2 | 31.707 | 492 | 300 | 11 | 65 | 539 | 61 | 533 | 6.25e-58 | 202 |
| Msa1193910 | AT3G66658.2 | 28.487 | 509 | 331 | 9 | 50 | 531 | 26 | 528 | 7.45e-58 | 203 |
| Msa1193910 | AT2G14170.2 | 31.417 | 487 | 310 | 12 | 63 | 536 | 8 | 483 | 3.46e-57 | 199 |
| Msa1193910 | AT2G14170.3 | 33.030 | 439 | 277 | 10 | 63 | 493 | 117 | 546 | 1.36e-56 | 199 |
| Msa1193910 | AT2G14170.1 | 31.417 | 487 | 310 | 12 | 63 | 536 | 117 | 592 | 1.83e-56 | 199 |
| Msa1193910 | AT1G44170.1 | 28.829 | 444 | 298 | 12 | 96 | 531 | 9 | 442 | 1.80e-38 | 147 |
| Msa1193910 | AT1G44170.2 | 28.829 | 444 | 298 | 12 | 96 | 531 | 9 | 442 | 1.80e-38 | 147 |
| Msa1193910 | AT1G44170.3 | 29.971 | 347 | 233 | 8 | 188 | 531 | 40 | 379 | 9.67e-34 | 133 |
| Msa1193910 | AT4G36250.1 | 27.912 | 455 | 297 | 16 | 93 | 531 | 2 | 441 | 3.10e-32 | 130 |
| Msa1193910 | AT4G34240.3 | 28.736 | 348 | 236 | 8 | 188 | 531 | 24 | 363 | 3.02e-28 | 117 |
| Msa1193910 | AT4G34240.1 | 28.736 | 348 | 236 | 8 | 188 | 531 | 166 | 505 | 1.99e-27 | 116 |
| Msa1193910 | AT4G34240.4 | 28.736 | 348 | 236 | 8 | 188 | 531 | 151 | 490 | 2.45e-27 | 116 |
| Msa1193910 | AT4G34240.2 | 38.065 | 155 | 91 | 4 | 188 | 341 | 166 | 316 | 4.58e-15 | 77.8 |
| Msa1193910 | AT5G62530.1 | 25.587 | 426 | 257 | 18 | 60 | 450 | 53 | 453 | 3.19e-11 | 66.2 |
Find 126 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTGGGAATGGTTATC+TGG | 0.219323 | 8_1:-40752496 | Msa1193910:intron |
| CCACCAAGCTCCAAAGTTAC+TGG | 0.253675 | 8_1:+40750803 | None:intergenic |
| ACAAGGGTACACAATGTTAT+TGG | 0.266650 | 8_1:+40753435 | None:intergenic |
| GCATCTTCGCAAACAATAAA+TGG | 0.267947 | 8_1:+40750773 | None:intergenic |
| AGTGGACAGGGCAGAGAAAA+AGG | 0.274646 | 8_1:-40749465 | Msa1193910:CDS |
| TTTACTGGTTCAACCGATAC+TGG | 0.279461 | 8_1:-40750866 | Msa1193910:CDS |
| CACGAACCAATTGGCGTTGC+TGG | 0.282957 | 8_1:-40751647 | Msa1193910:CDS |
| GTCTCACTTGAATTTCAATA+TGG | 0.295168 | 8_1:+40749954 | None:intergenic |
| TCTTCTCATGTTTGCTTGGA+AGG | 0.308492 | 8_1:-40751600 | Msa1193910:CDS |
| CTCATGTTTGCTTGGAAGGT+TGG | 0.312209 | 8_1:-40751596 | Msa1193910:CDS |
| GTAATATAGATCAATAAATA+TGG | 0.314788 | 8_1:-40749363 | Msa1193910:three_prime_UTR |
| GCACTTGAGACTTGGGATAA+TGG | 0.315242 | 8_1:-40751891 | Msa1193910:CDS |
| TTTGATGCTGCAATTCCTTT+TGG | 0.326962 | 8_1:-40749501 | Msa1193910:CDS |
| CATTGAAAGTTGGAACAGTT+TGG | 0.327575 | 8_1:-40749542 | Msa1193910:CDS |
| ATCTGAGCAGATTGTTCATA+TGG | 0.331515 | 8_1:+40751864 | None:intergenic |
| ATTGCAAAAGAAGAGATATT+TGG | 0.335473 | 8_1:-40749988 | Msa1193910:CDS |
| CACTTGAGACTTGGGATAAT+GGG | 0.341726 | 8_1:-40751890 | Msa1193910:CDS |
| TACTGTCTTCTCAAATGTTC+AGG | 0.364449 | 8_1:-40750127 | Msa1193910:intron |
| CTACAAATTTGCCATCGATT+AGG | 0.366038 | 8_1:+40752388 | None:intergenic |
| ATTGAAAGTTGGAACAGTTT+GGG | 0.367636 | 8_1:-40749541 | Msa1193910:CDS |
| ACTTGCACCGATGGTTTAAT+CGG | 0.379104 | 8_1:+40752426 | None:intergenic |
| ATTAGATCTGGCGTTGATAA+TGG | 0.379386 | 8_1:-40750207 | Msa1193910:CDS |
| AAAGCAATAGATGCAGTATC+AGG | 0.390480 | 8_1:+40749190 | None:intergenic |
| CAATCTTAAGCCAGTAACTT+TGG | 0.390920 | 8_1:-40750813 | Msa1193910:CDS |
| AGAGCAAACAATTCAAAGTA+TGG | 0.393602 | 8_1:-40749621 | Msa1193910:CDS |
| TCCCTCTTCTCATGTTTGCT+TGG | 0.401686 | 8_1:-40751604 | Msa1193910:CDS |
| CAGGGACAATGTTGCTGTGC+CGG | 0.407196 | 8_1:-40750615 | Msa1193910:CDS |
| TGGAAAAGTTGTCCTTCAAT+TGG | 0.409434 | 8_1:-40750846 | Msa1193910:CDS |
| AATTTCAATATGGTTTGTAC+TGG | 0.414009 | 8_1:+40749964 | None:intergenic |
| TGTTCTGTTCCTGACTTGAA+TGG | 0.414781 | 8_1:+40750507 | None:intergenic |
| TGCAATGTCTGCACATGATA+TGG | 0.425470 | 8_1:+40751668 | None:intergenic |
| TACCAGCATAGTAACGAATT+AGG | 0.432343 | 8_1:+40751820 | None:intergenic |
| AGCAATGATCATACATAAGC+TGG | 0.439518 | 8_1:+40752092 | None:intergenic |
| ATCTGACCAGCAACGCCAAT+TGG | 0.441277 | 8_1:+40751641 | None:intergenic |
| CATACATAAGCTGGAAACTT+AGG | 0.447847 | 8_1:+40752101 | None:intergenic |
| CAGACATTGCACGAACCAAT+TGG | 0.452449 | 8_1:-40751656 | Msa1193910:CDS |
| AATGGCGCTACACTTGAAAC+TGG | 0.456541 | 8_1:-40750189 | Msa1193910:CDS |
| CGCCTAATTCGTTACTATGC+TGG | 0.456816 | 8_1:-40751822 | Msa1193910:intron |
| CGAATTAGGCGAACCAGCAT+TGG | 0.458512 | 8_1:+40751834 | None:intergenic |
| AAATTGCAGCACTTGAGACT+TGG | 0.458601 | 8_1:-40751899 | Msa1193910:CDS |
| AGCAGACAATGGCGTCTGTT+CGG | 0.461854 | 8_1:+40751532 | None:intergenic |
| TTGTAGGCCGGACTTCCTGC+TGG | 0.465059 | 8_1:-40751360 | Msa1193910:intron |
| AAGCCAGTAACTTTGGAGCT+TGG | 0.466523 | 8_1:-40750806 | Msa1193910:CDS |
| GCAATCACTTCCCCTGTCCT+TGG | 0.470122 | 8_1:+40752203 | None:intergenic |
| TTGACTAGAGCATTGAAAGT+TGG | 0.470715 | 8_1:-40749552 | Msa1193910:CDS |
| GCACGCAAAGCATTTGATCA+AGG | 0.473740 | 8_1:-40752131 | Msa1193910:CDS |
| GGTTGGGCAGATAAGATTCA+TGG | 0.473931 | 8_1:-40751713 | Msa1193910:CDS |
| TGCTTTGCGTGCAGCTGCAA+CGG | 0.475234 | 8_1:+40752142 | None:intergenic |
| TTGAATATAATATCTGGCTT+TGG | 0.484962 | 8_1:-40751333 | Msa1193910:CDS |
| CTTTGCCTTGTTCTTTAACC+AGG | 0.485383 | 8_1:-40750720 | Msa1193910:intron |
| CCAGTAACTTTGGAGCTTGG+TGG | 0.486152 | 8_1:-40750803 | Msa1193910:CDS |
| AATGTACTTTCAGGTGGGAA+TGG | 0.487239 | 8_1:-40752504 | Msa1193910:intron |
| AGGGACAATGTTGCTGTGCC+GGG | 0.490364 | 8_1:-40750614 | Msa1193910:CDS |
| TCAAAGTATGGTCTTGCAGC+AGG | 0.491649 | 8_1:-40749609 | Msa1193910:CDS |
| TAGTCACATGGATGTTGATA+AGG | 0.496076 | 8_1:-40751286 | Msa1193910:intron |
| TCAGATTGAAATTCCAATGC+TGG | 0.496455 | 8_1:-40751847 | Msa1193910:CDS |
| TCTGGCTTTGGTCCAACTGC+AGG | 0.500521 | 8_1:-40751321 | Msa1193910:CDS |
| CCAACATTGGATCCAAGGAC+AGG | 0.507885 | 8_1:-40752215 | Msa1193910:CDS |
| CCTGTCCTTGGATCCAATGT+TGG | 0.511997 | 8_1:+40752215 | None:intergenic |
| GGTGTGTTGAATATAATATC+TGG | 0.513993 | 8_1:-40751339 | Msa1193910:CDS |
| CTCATCTTATATCCACCAAA+AGG | 0.515568 | 8_1:+40749486 | None:intergenic |
| ATATTGAAGTATATTAGATC+TGG | 0.517435 | 8_1:-40750219 | Msa1193910:CDS |
| CAGTAACTTTGGAGCTTGGT+GGG | 0.518287 | 8_1:-40750802 | Msa1193910:CDS |
| CAACACACCAGCAGGAAGTC+CGG | 0.521409 | 8_1:+40751353 | None:intergenic |
| CTTCTTCAATCAAAATCTCA+AGG | 0.522051 | 8_1:-40753368 | Msa1193910:CDS |
| GGGCTCACAGTTCCAGCTGA+TGG | 0.526400 | 8_1:-40751692 | Msa1193910:CDS |
| ATGCTTATCTTCTATAAAGT+AGG | 0.529128 | 8_1:-40753460 | Msa1193910:five_prime_UTR |
| ACGTGTGCATGAGGAGTTTG+TGG | 0.530875 | 8_1:-40750571 | Msa1193910:CDS |
| GTAGGAGATCCATTCAAGTC+AGG | 0.532267 | 8_1:-40750516 | Msa1193910:CDS |
| TCAGGTGGGAATGGTTATCT+GGG | 0.532469 | 8_1:-40752495 | Msa1193910:intron |
| ATTATATTCAACACACCAGC+AGG | 0.533022 | 8_1:+40751345 | None:intergenic |
| AATTGCAGCACTTGAGACTT+GGG | 0.535187 | 8_1:-40751898 | Msa1193910:CDS |
| TGGATATAAGATGAGTGGAC+AGG | 0.537139 | 8_1:-40749478 | Msa1193910:CDS |
| AGGAACAGAACAAGGTCCTC+AGG | 0.538549 | 8_1:-40750496 | Msa1193910:intron |
| ACAGATGCTCAAAGCCATGC+TGG | 0.538877 | 8_1:+40749384 | None:intergenic |
| ATGAGAAGAGGGAAGTTCCA+TGG | 0.539559 | 8_1:+40751614 | None:intergenic |
| ACATGATATGGTCCATCAGC+TGG | 0.548696 | 8_1:+40751680 | None:intergenic |
| GTGTGGTCGACTTGCACCGA+TGG | 0.550868 | 8_1:+40752417 | None:intergenic |
| GCAAGAGCAGCACCTGCAGT+TGG | 0.553046 | 8_1:+40751309 | None:intergenic |
| TGCTGCTCTTGCTAGTCACA+TGG | 0.554143 | 8_1:-40751298 | Msa1193910:CDS |
| CATTTCCAACATTGGATCCA+AGG | 0.556983 | 8_1:-40752220 | Msa1193910:CDS |
| CACGCAAAGCATTTGATCAA+GGG | 0.557713 | 8_1:-40752130 | Msa1193910:CDS |
| TACAGCACGTTTCAAAGCAC+GGG | 0.560601 | 8_1:+40750536 | None:intergenic |
| CAACATTGGATCCAAGGACA+GGG | 0.563764 | 8_1:-40752214 | Msa1193910:CDS |
| TTGATTGATTCAAGGGACCT+TGG | 0.567569 | 8_1:-40749657 | Msa1193910:intron |
| AGGTAGAACATTTCCAACAT+TGG | 0.570539 | 8_1:-40752228 | Msa1193910:CDS |
| AAGCATTTGATCAAGGGCCG+TGG | 0.572236 | 8_1:-40752124 | Msa1193910:CDS |
| GTGTTGCCACACGCTAATGC+TGG | 0.572272 | 8_1:+40751572 | None:intergenic |
| AAATTTGTAGATGCTGCTGC+TGG | 0.577592 | 8_1:-40752375 | Msa1193910:intron |
| CTACAGCACGTTTCAAAGCA+CGG | 0.582648 | 8_1:+40750535 | None:intergenic |
| TCCAAGCAAACATGAGAAGA+GGG | 0.585819 | 8_1:+40751603 | None:intergenic |
| AGGAGAAAGACTTGGTAGCA+AGG | 0.587482 | 8_1:-40750166 | Msa1193910:CDS |
| ATGTACAAATGTTCGAGACC+CGG | 0.588405 | 8_1:+40750596 | None:intergenic |
| AGTGATTGCTCATGTTGCTG+AGG | 0.588599 | 8_1:-40752189 | Msa1193910:CDS |
| TTTGGTGGATATAAGATGAG+TGG | 0.589571 | 8_1:-40749483 | Msa1193910:CDS |
| TTCAAGTCAGGAACAGAACA+AGG | 0.593415 | 8_1:-40750504 | Msa1193910:CDS |
| GGATATAAGATGAGTGGACA+GGG | 0.593641 | 8_1:-40749477 | Msa1193910:CDS |
| CTCTTTGAATTACCTCACCA+AGG | 0.596102 | 8_1:+40749640 | None:intergenic |
| CACCTTTGAAGAATCCAGCA+TGG | 0.596410 | 8_1:-40749398 | Msa1193910:CDS |
| GTTGGGCAGATAAGATTCAT+GGG | 0.597943 | 8_1:-40751712 | Msa1193910:CDS |
| TTCCAAGCAAACATGAGAAG+AGG | 0.599102 | 8_1:+40751602 | None:intergenic |
| GGAGAAAGACTTGGTAGCAA+GGG | 0.599344 | 8_1:-40750165 | Msa1193910:CDS |
| CGTGCTTTGAAACGTGCTGT+AGG | 0.601175 | 8_1:-40750534 | Msa1193910:CDS |
| TTTCACACACACTATTCACA+AGG | 0.603941 | 8_1:+40753418 | None:intergenic |
| GGTGGGAATGGTTATCTGGG+TGG | 0.605677 | 8_1:-40752492 | Msa1193910:CDS |
| ACCACGAGAAAACAAGGAGG+TGG | 0.610351 | 8_1:+40753311 | None:intergenic |
| AGCCATGCTGGATTCTTCAA+AGG | 0.612311 | 8_1:+40749396 | None:intergenic |
| TAATTTACCACGAGAAAACA+AGG | 0.622670 | 8_1:+40753305 | None:intergenic |
| TTGCTGGTCAGATCATTCCA+TGG | 0.623473 | 8_1:-40751631 | Msa1193910:CDS |
| GAAACTGGAGGAGAAAGACT+TGG | 0.623804 | 8_1:-40750174 | Msa1193910:CDS |
| TGATTCAAGGGACCTTGGTG+AGG | 0.625920 | 8_1:-40749652 | Msa1193910:intron |
| CACACTCAGCTCCTAATCGA+TGG | 0.626153 | 8_1:-40752399 | Msa1193910:CDS |
| GCTACATACAAAGCAGACAA+TGG | 0.629627 | 8_1:+40751521 | None:intergenic |
| TGAACATTTGAGAAGACAGT+AGG | 0.631599 | 8_1:+40750129 | None:intergenic |
| ACATACCTGGTTAAAGAACA+AGG | 0.635925 | 8_1:+40750715 | None:intergenic |
| GTGATTGCTCATGTTGCTGA+GGG | 0.636914 | 8_1:-40752188 | Msa1193910:CDS |
| GGCGCTACACTTGAAACTGG+AGG | 0.646681 | 8_1:-40750186 | Msa1193910:CDS |
| TAAGCTGGAAACTTAGGCCA+CGG | 0.652576 | 8_1:+40752107 | None:intergenic |
| GGAGTTTGTGGAGAAAGCAA+AGG | 0.675768 | 8_1:-40750559 | Msa1193910:CDS |
| TGTAGCAAAACTATTTCACG+AGG | 0.677900 | 8_1:-40751504 | Msa1193910:intron |
| TGTACATGAACGTGTGCATG+AGG | 0.681956 | 8_1:-40750580 | Msa1193910:CDS |
| AACATTGGATCCAAGGACAG+GGG | 0.683175 | 8_1:-40752213 | Msa1193910:CDS |
| GTTGGACCAGCATTAGCGTG+TGG | 0.686548 | 8_1:-40751578 | Msa1193910:CDS |
| TTCACACACACTATTCACAA+GGG | 0.689461 | 8_1:+40753419 | None:intergenic |
| CATCGATTAGGAGCTGAGTG+TGG | 0.695634 | 8_1:+40752400 | None:intergenic |
| TTTACCACGAGAAAACAAGG+AGG | 0.806523 | 8_1:+40753308 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATAATAAAATTTATTTT+TGG | - | chr8_1:40753460-40753479 | Msa1193910:five_prime_UTR | 0.0% |
| !!! | TAATAATAAAATTTATTTTT+GGG | - | chr8_1:40753461-40753480 | Msa1193910:five_prime_UTR | 0.0% |
| !! | TATATAAATTAAAACAAGAT+TGG | + | chr8_1:40751229-40751248 | None:intergenic | 10.0% |
| !! | AAAAAAAGCAAATAAAAATA+GGG | + | chr8_1:40752990-40753009 | None:intergenic | 10.0% |
| !! | TAAAAAAAGCAAATAAAAAT+AGG | + | chr8_1:40752991-40753010 | None:intergenic | 10.0% |
| !!! | TTTTTAAGAAAATGATTTTC+TGG | - | chr8_1:40749526-40749545 | Msa1193910:CDS | 15.0% |
| !!! | TTTTAAGAAAATGATTTTCT+GGG | - | chr8_1:40749527-40749546 | Msa1193910:CDS | 15.0% |
| !!! | AGAAAAATAAGATAAGATTT+TGG | - | chr8_1:40749601-40749620 | Msa1193910:CDS | 15.0% |
| !!! | CTTTTTATACAATTTTGATT+AGG | - | chr8_1:40750367-40750386 | Msa1193910:intron | 15.0% |
| !!! | GAAGATAAAGATATATTTTA+TGG | + | chr8_1:40751293-40751312 | None:intergenic | 15.0% |
| !! | GTAATATAGATCAATAAATA+TGG | - | chr8_1:40753331-40753350 | Msa1193910:CDS | 15.0% |
| !! | ACAAAACAAAAAATCTCTAA+TGG | - | chr8_1:40749303-40749322 | Msa1193910:three_prime_UTR | 20.0% |
| !!! | TTTAAGAAAATGATTTTCTG+GGG | - | chr8_1:40749528-40749547 | Msa1193910:CDS | 20.0% |
| !!! | TTTTGAATTTGATTGATGAT+AGG | - | chr8_1:40749554-40749573 | Msa1193910:CDS | 20.0% |
| !!! | TTTTTCTTTCATTAATTGCA+TGG | - | chr8_1:40749667-40749686 | Msa1193910:intron | 20.0% |
| !! | TAATTTAAACATGCATTTCA+AGG | + | chr8_1:40749881-40749900 | None:intergenic | 20.0% |
| !! | GAAATGCATGTTTAAATTAA+CGG | - | chr8_1:40749882-40749901 | Msa1193910:intron | 20.0% |
| !!! | ATTTCAATTGGTGATTAAAA+GGG | - | chr8_1:40750076-40750095 | Msa1193910:intron | 20.0% |
| !!! | TTCAGTTTATGATTTTCATT+AGG | - | chr8_1:40750103-40750122 | Msa1193910:intron | 20.0% |
| !!! | TCAGTTTATGATTTTCATTA+GGG | - | chr8_1:40750104-40750123 | Msa1193910:intron | 20.0% |
| !! | ATGATAGATTGAATATTGAA+AGG | - | chr8_1:40750161-40750180 | Msa1193910:CDS | 20.0% |
| !! | TGATAGATTGAATATTGAAA+GGG | - | chr8_1:40750162-40750181 | Msa1193910:CDS | 20.0% |
| !!! | TACAAAAACATTGTTTTTAG+TGG | - | chr8_1:40751255-40751274 | Msa1193910:intron | 20.0% |
| !! | TACAAGAAAGATTACAAATT+AGG | + | chr8_1:40751319-40751338 | None:intergenic | 20.0% |
| !!! | TAATTTGTAATCTTTCTTGT+AGG | - | chr8_1:40751318-40751337 | Msa1193910:CDS | 20.0% |
| !! | AAAAAGAGTCATAAACATTA+AGG | + | chr8_1:40752382-40752401 | None:intergenic | 20.0% |
| !! | ATATTGAAGTATATTAGATC+TGG | - | chr8_1:40752475-40752494 | Msa1193910:CDS | 20.0% |
| !! | CAGATACAATTAAAAACATT+AGG | + | chr8_1:40752660-40752679 | None:intergenic | 20.0% |
| !!! | TCACTAGAAAATTTTATAAG+AGG | - | chr8_1:40752931-40752950 | Msa1193910:intron | 20.0% |
| !!! | ATTTAATGTTGATTGATTCA+AGG | - | chr8_1:40753029-40753048 | Msa1193910:intron | 20.0% |
| !!! | TTTAATGTTGATTGATTCAA+GGG | - | chr8_1:40753030-40753049 | Msa1193910:intron | 20.0% |
| ! | ATGCTTATCTTCTATAAAGT+AGG | - | chr8_1:40749234-40749253 | Msa1193910:three_prime_UTR | 25.0% |
| ! | GGCTATAGTAATATGAAAAT+TGG | - | chr8_1:40749805-40749824 | Msa1193910:intron | 25.0% |
| ! | GTTTAGATTGATTGTCTATT+TGG | - | chr8_1:40749837-40749856 | Msa1193910:intron | 25.0% |
| !! | ATTTTTGTTAAGTCCATCTT+TGG | + | chr8_1:40749961-40749980 | None:intergenic | 25.0% |
| ! | GATGTTATCTTGATTTCAAT+TGG | - | chr8_1:40750064-40750083 | Msa1193910:intron | 25.0% |
| !! | GATTTCAATTGGTGATTAAA+AGG | - | chr8_1:40750075-40750094 | Msa1193910:intron | 25.0% |
| !! | TTTCAATTGGTGATTAAAAG+GGG | - | chr8_1:40750077-40750096 | Msa1193910:intron | 25.0% |
| !! | CAGTTTATGATTTTCATTAG+GGG | - | chr8_1:40750105-40750124 | Msa1193910:intron | 25.0% |
| !! | AAAAAAATGTACTTTCAGGT+GGG | - | chr8_1:40750185-40750204 | Msa1193910:CDS | 25.0% |
| !!! | TTTAATCGGTTTTTCATCAA+TGG | + | chr8_1:40750257-40750276 | None:intergenic | 25.0% |
| !!! | TTTTGATTAGGAAAGAAAAG+AGG | - | chr8_1:40750379-40750398 | Msa1193910:intron | 25.0% |
| ! | AAGAAAAGAGGATTAACTAA+AGG | - | chr8_1:40750391-40750410 | Msa1193910:intron | 25.0% |
| ! | GATTAACTAAAGGAAAAGAA+GGG | - | chr8_1:40750401-40750420 | Msa1193910:intron | 25.0% |
| ! | GTTTGTCAAGTCATTATATT+TGG | - | chr8_1:40750656-40750675 | Msa1193910:intron | 25.0% |
| !!! | TTTCTGTTTCTGTGTTTTAT+AGG | - | chr8_1:40750718-40750737 | Msa1193910:intron | 25.0% |
| !! | TTGAATATAATATCTGGCTT+TGG | - | chr8_1:40751361-40751380 | Msa1193910:intron | 25.0% |
| !! | ATGCTTTCAATCTAAAATGT+CGG | + | chr8_1:40751515-40751534 | None:intergenic | 25.0% |
| !! | ATCAATGATATCCGAATTTT+AGG | + | chr8_1:40752040-40752059 | None:intergenic | 25.0% |
| ! | AAAATTCGGATATCATTGAT+TGG | - | chr8_1:40752040-40752059 | Msa1193910:intron | 25.0% |
| ! | TATTCATTGTAATTTACCTG+AGG | + | chr8_1:40752217-40752236 | None:intergenic | 25.0% |
| ! | TTTGAATCAATCTGATTGTT+TGG | + | chr8_1:40752442-40752461 | None:intergenic | 25.0% |
| ! | TTATATTCTCATCTTTGCAA+AGG | - | chr8_1:40752617-40752636 | Msa1193910:intron | 25.0% |
| ! | ATTGCAAAAGAAGAGATATT+TGG | - | chr8_1:40752706-40752725 | Msa1193910:intron | 25.0% |
| !! | AATTTCAATATGGTTTGTAC+TGG | + | chr8_1:40752733-40752752 | None:intergenic | 25.0% |
| ! | TATAGACTACATTTGATGAA+GGG | + | chr8_1:40752834-40752853 | None:intergenic | 25.0% |
| ! | ATATAGACTACATTTGATGA+AGG | + | chr8_1:40752835-40752854 | None:intergenic | 25.0% |
| !!! | TATAAGAGGTGTATTTTACA+AGG | - | chr8_1:40752945-40752964 | Msa1193910:intron | 25.0% |
| !!! | ACATTTGATGTTTTTACCTT+TGG | - | chr8_1:40753407-40753426 | Msa1193910:five_prime_UTR | 25.0% |
| ! | ATTCAAGCATAAAAAACCAA+AGG | + | chr8_1:40753426-40753445 | None:intergenic | 25.0% |
| CTTCTTCAATCAAAATCTCA+AGG | - | chr8_1:40749326-40749345 | Msa1193910:three_prime_UTR | 30.0% | |
| TAATTTACCACGAGAAAACA+AGG | + | chr8_1:40749392-40749411 | None:intergenic | 30.0% | |
| TCTTTCATTAATTGCATGGT+TGG | - | chr8_1:40749671-40749690 | Msa1193910:intron | 30.0% | |
| !!! | TAAGAGTGCTACTACTTTTT+TGG | - | chr8_1:40749784-40749803 | Msa1193910:intron | 30.0% |
| TTTAAACATGCATTTCAAGG+TGG | + | chr8_1:40749878-40749897 | None:intergenic | 30.0% | |
| ! | ATGATTTTCATTAGGGGTTT+AGG | - | chr8_1:40750111-40750130 | Msa1193910:intron | 30.0% |
| !!! | TAGGGGTTTAGGTTTTTTAA+AGG | - | chr8_1:40750122-40750141 | Msa1193910:intron | 30.0% |
| AGGGAAAAAAATGTACTTTC+AGG | - | chr8_1:40750181-40750200 | Msa1193910:CDS | 30.0% | |
| GAAAAAAATGTACTTTCAGG+TGG | - | chr8_1:40750184-40750203 | Msa1193910:CDS | 30.0% | |
| TGAAAAACCGATTAAACCAT+CGG | - | chr8_1:40750261-40750280 | Msa1193910:intron | 30.0% | |
| GGATTAACTAAAGGAAAAGA+AGG | - | chr8_1:40750400-40750419 | Msa1193910:intron | 30.0% | |
| ! | TTTTGTGGTATCTTACCTTT+TGG | - | chr8_1:40750428-40750447 | Msa1193910:intron | 30.0% |
| CAGAAACAGAAAAACAAAAG+TGG | + | chr8_1:40750710-40750729 | None:intergenic | 30.0% | |
| ! | GTTTCTGTGTTTTATAGGAA+AGG | - | chr8_1:40750723-40750742 | Msa1193910:CDS | 30.0% |
| ! | TGTATTTTCATATTTACCCC+AGG | - | chr8_1:40750960-40750979 | Msa1193910:intron | 30.0% |
| GGTGTGTTGAATATAATATC+TGG | - | chr8_1:40751355-40751374 | Msa1193910:CDS | 30.0% | |
| !! | TTTTAGATTGAAAGCATGTC+TGG | - | chr8_1:40751518-40751537 | Msa1193910:CDS | 30.0% |
| TGTCAAACACTAACACATAT+CGG | + | chr8_1:40751547-40751566 | None:intergenic | 30.0% | |
| ! | CAAAAGATTTTCCAAGATTC+AGG | + | chr8_1:40751799-40751818 | None:intergenic | 30.0% |
| CAATTGTCTCTCCTAAAATT+CGG | - | chr8_1:40752026-40752045 | Msa1193910:intron | 30.0% | |
| !! | TTTGTTTTCCTAATTCGCTA+CGG | - | chr8_1:40752271-40752290 | Msa1193910:intron | 30.0% |
| GTCTCACTTGAATTTCAATA+TGG | + | chr8_1:40752743-40752762 | None:intergenic | 30.0% | |
| ATCTACAAATCAAGACTCAT+TGG | + | chr8_1:40752765-40752784 | None:intergenic | 30.0% | |
| AGAGCAAACAATTCAAAGTA+TGG | - | chr8_1:40753073-40753092 | Msa1193910:intron | 30.0% | |
| ATTGAAAGTTGGAACAGTTT+GGG | - | chr8_1:40753153-40753172 | Msa1193910:intron | 30.0% | |
| TAAAAACTACTTGCAAGTGA+AGG | - | chr8_1:40753264-40753283 | Msa1193910:intron | 30.0% | |
| ! | ACAAGGGTACACAATGTTAT+TGG | + | chr8_1:40749262-40749281 | None:intergenic | 35.0% |
| TTCACACACACTATTCACAA+GGG | + | chr8_1:40749278-40749297 | None:intergenic | 35.0% | |
| TTTCACACACACTATTCACA+AGG | + | chr8_1:40749279-40749298 | None:intergenic | 35.0% | |
| TGTAATCTGTGTGACATGAA+AGG | - | chr8_1:40749636-40749655 | Msa1193910:CDS | 35.0% | |
| TTGTCTATTTGGCAGAATCA+CGG | - | chr8_1:40749848-40749867 | Msa1193910:intron | 35.0% | |
| ATTGACACTAGATCCAAAGA+TGG | - | chr8_1:40749945-40749964 | Msa1193910:intron | 35.0% | |
| CTAAAAACTCATGTCTGTGT+CGG | - | chr8_1:40750033-40750052 | Msa1193910:intron | 35.0% | |
| ! | CTACAAATTTGCCATCGATT+AGG | + | chr8_1:40750309-40750328 | None:intergenic | 35.0% |
| !!! | GAAAAGAAGGGTTGTTTTTG+TGG | - | chr8_1:40750413-40750432 | Msa1193910:intron | 35.0% |
| AGGTAGAACATTTCCAACAT+TGG | - | chr8_1:40750466-40750485 | Msa1193910:intron | 35.0% | |
| CATACATAAGCTGGAAACTT+AGG | + | chr8_1:40750596-40750615 | None:intergenic | 35.0% | |
| AGCAATGATCATACATAAGC+TGG | + | chr8_1:40750605-40750624 | None:intergenic | 35.0% | |
| ATCTGAGCAGATTGTTCATA+TGG | + | chr8_1:40750833-40750852 | None:intergenic | 35.0% | |
| TCAGATTGAAATTCCAATGC+TGG | - | chr8_1:40750847-40750866 | Msa1193910:CDS | 35.0% | |
| TACCAGCATAGTAACGAATT+AGG | + | chr8_1:40750877-40750896 | None:intergenic | 35.0% | |
| ! | TTTTCATATTTACCCCAGGT+TGG | - | chr8_1:40750964-40750983 | Msa1193910:intron | 35.0% |
| TTTCATATTTACCCCAGGTT+GGG | - | chr8_1:40750965-40750984 | Msa1193910:intron | 35.0% | |
| TGTAGCAAAACTATTTCACG+AGG | - | chr8_1:40751190-40751209 | Msa1193910:intron | 35.0% | |
| TTGTAATCTTTCTTGTAGGC+CGG | - | chr8_1:40751322-40751341 | Msa1193910:CDS | 35.0% | |
| ATTATATTCAACACACCAGC+AGG | + | chr8_1:40751352-40751371 | None:intergenic | 35.0% | |
| TAGTCACATGGATGTTGATA+AGG | - | chr8_1:40751408-40751427 | Msa1193910:intron | 35.0% | |
| CTATGTATCAAAGTTGTGTC+CGG | - | chr8_1:40751632-40751651 | Msa1193910:CDS | 35.0% | |
| !!! | GCGTTTTGTTTGTACATTAG+TGG | - | chr8_1:40751751-40751770 | Msa1193910:intron | 35.0% |
| ! | AAGGACAACTTTTCCAGTAT+CGG | + | chr8_1:40751844-40751863 | None:intergenic | 35.0% |
| TGGAAAAGTTGTCCTTCAAT+TGG | - | chr8_1:40751848-40751867 | Msa1193910:CDS | 35.0% | |
| CAATCTTAAGCCAGTAACTT+TGG | - | chr8_1:40751881-40751900 | Msa1193910:CDS | 35.0% | |
| GCATCTTCGCAAACAATAAA+TGG | + | chr8_1:40751924-40751943 | None:intergenic | 35.0% | |
| ACATACCTGGTTAAAGAACA+AGG | + | chr8_1:40751982-40752001 | None:intergenic | 35.0% | |
| TTGTGATGTTCAGATACTAG+AGG | - | chr8_1:40752297-40752316 | Msa1193910:intron | 35.0% | |
| !! | ATTAGATCTGGCGTTGATAA+TGG | - | chr8_1:40752487-40752506 | Msa1193910:CDS | 35.0% |
| TGAACATTTGAGAAGACAGT+AGG | + | chr8_1:40752568-40752587 | None:intergenic | 35.0% | |
| TACTGTCTTCTCAAATGTTC+AGG | - | chr8_1:40752567-40752586 | Msa1193910:intron | 35.0% | |
| TGTATCTGTAACAATCATCC+AGG | - | chr8_1:40752672-40752691 | Msa1193910:intron | 35.0% | |
| ! | TTGATGAAGGGTGCATTAAA+GGG | + | chr8_1:40752822-40752841 | None:intergenic | 35.0% |
| ! | TTTGATGAAGGGTGCATTAA+AGG | + | chr8_1:40752823-40752842 | None:intergenic | 35.0% |
| TTCGCACAAATCGTCAAATT+GGG | + | chr8_1:40752881-40752900 | None:intergenic | 35.0% | |
| TTTCGCACAAATCGTCAAAT+TGG | + | chr8_1:40752882-40752901 | None:intergenic | 35.0% | |
| !! | TTGACTAGAGCATTGAAAGT+TGG | - | chr8_1:40753142-40753161 | Msa1193910:intron | 35.0% |
| CATTGAAAGTTGGAACAGTT+TGG | - | chr8_1:40753152-40753171 | Msa1193910:intron | 35.0% | |
| ! | TTTGATGCTGCAATTCCTTT+TGG | - | chr8_1:40753193-40753212 | Msa1193910:intron | 35.0% |
| CTCATCTTATATCCACCAAA+AGG | + | chr8_1:40753211-40753230 | None:intergenic | 35.0% | |
| ! | TTTGGTGGATATAAGATGAG+TGG | - | chr8_1:40753211-40753230 | Msa1193910:intron | 35.0% |
| TTTACCACGAGAAAACAAGG+AGG | + | chr8_1:40749389-40749408 | None:intergenic | 40.0% | |
| ATCTGTGTGACATGAAAGGA+AGG | - | chr8_1:40749640-40749659 | Msa1193910:CDS | 40.0% | |
| !! | CATGGTTGGTACTACTTTTG+TGG | - | chr8_1:40749685-40749704 | Msa1193910:intron | 40.0% |
| CGGTGAGATAAGTGAAATCA+CGG | - | chr8_1:40749902-40749921 | Msa1193910:intron | 40.0% | |
| TGAGATAAGTGAAATCACGG+TGG | - | chr8_1:40749905-40749924 | Msa1193910:intron | 40.0% | |
| !!! | CACAGACATGAGTTTTTAGC+AGG | + | chr8_1:40750032-40750051 | None:intergenic | 40.0% |
| ! | AATGTACTTTCAGGTGGGAA+TGG | - | chr8_1:40750190-40750209 | Msa1193910:CDS | 40.0% |
| ! | ACTTGCACCGATGGTTTAAT+CGG | + | chr8_1:40750271-40750290 | None:intergenic | 40.0% |
| AAATTTGTAGATGCTGCTGC+TGG | - | chr8_1:40750319-40750338 | Msa1193910:intron | 40.0% | |
| GATCACAGACAAACTCCAAA+AGG | + | chr8_1:40750446-40750465 | None:intergenic | 40.0% | |
| ! | TTTGGAGTTTGTCTGTGATC+AGG | - | chr8_1:40750446-40750465 | Msa1193910:intron | 40.0% |
| CATTTCCAACATTGGATCCA+AGG | - | chr8_1:40750474-40750493 | Msa1193910:intron | 40.0% | |
| ! | CACGCAAAGCATTTGATCAA+GGG | - | chr8_1:40750564-40750583 | Msa1193910:CDS | 40.0% |
| AAATTGCAGCACTTGAGACT+TGG | - | chr8_1:40750795-40750814 | Msa1193910:CDS | 40.0% | |
| AATTGCAGCACTTGAGACTT+GGG | - | chr8_1:40750796-40750815 | Msa1193910:CDS | 40.0% | |
| CACTTGAGACTTGGGATAAT+GGG | - | chr8_1:40750804-40750823 | Msa1193910:CDS | 40.0% | |
| GTTGGGCAGATAAGATTCAT+GGG | - | chr8_1:40750982-40751001 | Msa1193910:intron | 40.0% | |
| TGCAATGTCTGCACATGATA+TGG | + | chr8_1:40751029-40751048 | None:intergenic | 40.0% | |
| TCCAAGCAAACATGAGAAGA+GGG | + | chr8_1:40751094-40751113 | None:intergenic | 40.0% | |
| TTCCAAGCAAACATGAGAAG+AGG | + | chr8_1:40751095-40751114 | None:intergenic | 40.0% | |
| TCTTCTCATGTTTGCTTGGA+AGG | - | chr8_1:40751094-40751113 | Msa1193910:intron | 40.0% | |
| GCTACATACAAAGCAGACAA+TGG | + | chr8_1:40751176-40751195 | None:intergenic | 40.0% | |
| ! | CAATCTAAAATGTCGGTGCA+TGG | + | chr8_1:40751508-40751527 | None:intergenic | 40.0% |
| TGAAACACTAACACAGACAC+CGG | + | chr8_1:40751654-40751673 | None:intergenic | 40.0% | |
| ! | TCGATCTTTGTTTCGTGTAG+AGG | - | chr8_1:40751711-40751730 | Msa1193910:CDS | 40.0% |
| ! | TCTAGAACAAGCCTGAATCT+TGG | - | chr8_1:40751785-40751804 | Msa1193910:intron | 40.0% |
| ! | CTTTTGCAGCTTGCATTTAC+TGG | - | chr8_1:40751813-40751832 | Msa1193910:intron | 40.0% |
| !! | TTTACTGGTTCAACCGATAC+TGG | - | chr8_1:40751828-40751847 | Msa1193910:CDS | 40.0% |
| !! | TGCTTTTAGCTGCCAATTGA+AGG | + | chr8_1:40751863-40751882 | None:intergenic | 40.0% |
| ! | CTTTGCCTTGTTCTTTAACC+AGG | - | chr8_1:40751974-40751993 | Msa1193910:intron | 40.0% |
| GAACTCTGATTGTACATACC+TGG | + | chr8_1:40751995-40752014 | None:intergenic | 40.0% | |
| ATGTACAAATGTTCGAGACC+CGG | + | chr8_1:40752101-40752120 | None:intergenic | 40.0% | |
| ! | TGTTCTGTTCCTGACTTGAA+TGG | + | chr8_1:40752190-40752209 | None:intergenic | 40.0% |
| TTCAAGTCAGGAACAGAACA+AGG | - | chr8_1:40752190-40752209 | Msa1193910:CDS | 40.0% | |
| TCTGTAACAATCATCCAGGA+TGG | - | chr8_1:40752676-40752695 | Msa1193910:intron | 40.0% | |
| ! | TTGATTGATTCAAGGGACCT+TGG | - | chr8_1:40753037-40753056 | Msa1193910:intron | 40.0% |
| CTCTTTGAATTACCTCACCA+AGG | + | chr8_1:40753057-40753076 | None:intergenic | 40.0% | |
| TGGATATAAGATGAGTGGAC+AGG | - | chr8_1:40753216-40753235 | Msa1193910:intron | 40.0% | |
| GGATATAAGATGAGTGGACA+GGG | - | chr8_1:40753217-40753236 | Msa1193910:intron | 40.0% | |
| ! | AAACTCATGTCTGTGTCGGT+TGG | - | chr8_1:40750037-40750056 | Msa1193910:intron | 45.0% |
| TTCAGGTGGGAATGGTTATC+TGG | - | chr8_1:40750198-40750217 | Msa1193910:CDS | 45.0% | |
| TCAGGTGGGAATGGTTATCT+GGG | - | chr8_1:40750199-40750218 | Msa1193910:CDS | 45.0% | |
| CAACATTGGATCCAAGGACA+GGG | - | chr8_1:40750480-40750499 | Msa1193910:intron | 45.0% | |
| AACATTGGATCCAAGGACAG+GGG | - | chr8_1:40750481-40750500 | Msa1193910:intron | 45.0% | |
| AGTGATTGCTCATGTTGCTG+AGG | - | chr8_1:40750505-40750524 | Msa1193910:CDS | 45.0% | |
| GTGATTGCTCATGTTGCTGA+GGG | - | chr8_1:40750506-40750525 | Msa1193910:CDS | 45.0% | |
| ! | GCACGCAAAGCATTTGATCA+AGG | - | chr8_1:40750563-40750582 | Msa1193910:CDS | 45.0% |
| TAAGCTGGAAACTTAGGCCA+CGG | + | chr8_1:40750590-40750609 | None:intergenic | 45.0% | |
| GCACTTGAGACTTGGGATAA+TGG | - | chr8_1:40750803-40750822 | Msa1193910:CDS | 45.0% | |
| CGCCTAATTCGTTACTATGC+TGG | - | chr8_1:40750872-40750891 | Msa1193910:CDS | 45.0% | |
| AATCTTATCTGCCCAACCTG+GGG | + | chr8_1:40750979-40750998 | None:intergenic | 45.0% | |
| GAATCTTATCTGCCCAACCT+GGG | + | chr8_1:40750980-40750999 | None:intergenic | 45.0% | |
| TGAATCTTATCTGCCCAACC+TGG | + | chr8_1:40750981-40751000 | None:intergenic | 45.0% | |
| GGTTGGGCAGATAAGATTCA+TGG | - | chr8_1:40750981-40751000 | Msa1193910:intron | 45.0% | |
| ACATGATATGGTCCATCAGC+TGG | + | chr8_1:40751017-40751036 | None:intergenic | 45.0% | |
| CAGACATTGCACGAACCAAT+TGG | - | chr8_1:40751038-40751057 | Msa1193910:intron | 45.0% | |
| TTGCTGGTCAGATCATTCCA+TGG | - | chr8_1:40751063-40751082 | Msa1193910:intron | 45.0% | |
| ATGAGAAGAGGGAAGTTCCA+TGG | + | chr8_1:40751083-40751102 | None:intergenic | 45.0% | |
| TCCCTCTTCTCATGTTTGCT+TGG | - | chr8_1:40751090-40751109 | Msa1193910:intron | 45.0% | |
| CTCATGTTTGCTTGGAAGGT+TGG | - | chr8_1:40751098-40751117 | Msa1193910:intron | 45.0% | |
| !! | AAGCCAGTAACTTTGGAGCT+TGG | - | chr8_1:40751888-40751907 | Msa1193910:CDS | 45.0% |
| !! | CAGTAACTTTGGAGCTTGGT+GGG | - | chr8_1:40751892-40751911 | Msa1193910:CDS | 45.0% |
| TGGCGTTCTTTCTGACATTC+AGG | - | chr8_1:40752060-40752079 | Msa1193910:intron | 45.0% | |
| GGCGTTCTTTCTGACATTCA+GGG | - | chr8_1:40752061-40752080 | Msa1193910:intron | 45.0% | |
| TGTACATGAACGTGTGCATG+AGG | - | chr8_1:40752114-40752133 | Msa1193910:CDS | 45.0% | |
| GGAGTTTGTGGAGAAAGCAA+AGG | - | chr8_1:40752135-40752154 | Msa1193910:CDS | 45.0% | |
| TACAGCACGTTTCAAAGCAC+GGG | + | chr8_1:40752161-40752180 | None:intergenic | 45.0% | |
| CTACAGCACGTTTCAAAGCA+CGG | + | chr8_1:40752162-40752181 | None:intergenic | 45.0% | |
| GTAGGAGATCCATTCAAGTC+AGG | - | chr8_1:40752178-40752197 | Msa1193910:CDS | 45.0% | |
| CACAATGACCGTAGCGAATT+AGG | + | chr8_1:40752282-40752301 | None:intergenic | 45.0% | |
| AATGGCGCTACACTTGAAAC+TGG | - | chr8_1:40752505-40752524 | Msa1193910:intron | 45.0% | |
| GAAACTGGAGGAGAAAGACT+TGG | - | chr8_1:40752520-40752539 | Msa1193910:intron | 45.0% | |
| ! | AGGAGAAAGACTTGGTAGCA+AGG | - | chr8_1:40752528-40752547 | Msa1193910:intron | 45.0% |
| ! | GGAGAAAGACTTGGTAGCAA+GGG | - | chr8_1:40752529-40752548 | Msa1193910:intron | 45.0% |
| GTGATGCTCAGTTCTCAATC+TGG | + | chr8_1:40752915-40752934 | None:intergenic | 45.0% | |
| ! | TCAAAGTATGGTCTTGCAGC+AGG | - | chr8_1:40753085-40753104 | Msa1193910:intron | 45.0% |
| ! | GATGCTGCAATTCCTTTTGG+TGG | - | chr8_1:40753196-40753215 | Msa1193910:intron | 45.0% |
| ! | CACCTTTGAAGAATCCAGCA+TGG | - | chr8_1:40753296-40753315 | Msa1193910:intron | 45.0% |
| AGCCATGCTGGATTCTTCAA+AGG | + | chr8_1:40753301-40753320 | None:intergenic | 45.0% | |
| !!! | AAATTTTATTATTAATATAC+TGG | + | chr8_1:40753455-40753474 | None:intergenic | 5.0% |
| !!! | TCCACCTCCTTGTTTTCTCG+TGG | - | chr8_1:40749382-40749401 | Msa1193910:exon | 50.0% |
| ACCACGAGAAAACAAGGAGG+TGG | + | chr8_1:40749386-40749405 | None:intergenic | 50.0% | |
| ! | CATCGATTAGGAGCTGAGTG+TGG | + | chr8_1:40750297-40750316 | None:intergenic | 50.0% |
| CACACTCAGCTCCTAATCGA+TGG | - | chr8_1:40750295-40750314 | Msa1193910:intron | 50.0% | |
| CCTGTCCTTGGATCCAATGT+TGG | + | chr8_1:40750482-40750501 | None:intergenic | 50.0% | |
| CCAACATTGGATCCAAGGAC+AGG | - | chr8_1:40750479-40750498 | Msa1193910:intron | 50.0% | |
| AAGCATTTGATCAAGGGCCG+TGG | - | chr8_1:40750570-40750589 | Msa1193910:CDS | 50.0% | |
| CGAATTAGGCGAACCAGCAT+TGG | + | chr8_1:40750863-40750882 | None:intergenic | 50.0% | |
| CGTTACTATGCTGGTACGTG+CGG | - | chr8_1:40750881-40750900 | Msa1193910:intron | 50.0% | |
| ATCTGACCAGCAACGCCAAT+TGG | + | chr8_1:40751056-40751075 | None:intergenic | 50.0% | |
| AGCAGACAATGGCGTCTGTT+CGG | + | chr8_1:40751165-40751184 | None:intergenic | 50.0% | |
| TGCTGCTCTTGCTAGTCACA+TGG | - | chr8_1:40751396-40751415 | Msa1193910:intron | 50.0% | |
| CCACCAAGCTCCAAAGTTAC+TGG | + | chr8_1:40751894-40751913 | None:intergenic | 50.0% | |
| !! | CCAGTAACTTTGGAGCTTGG+TGG | - | chr8_1:40751891-40751910 | Msa1193910:CDS | 50.0% |
| ACGTGTGCATGAGGAGTTTG+TGG | - | chr8_1:40752123-40752142 | Msa1193910:CDS | 50.0% | |
| !! | CGTGCTTTGAAACGTGCTGT+AGG | - | chr8_1:40752160-40752179 | Msa1193910:CDS | 50.0% |
| AGGAACAGAACAAGGTCCTC+AGG | - | chr8_1:40752198-40752217 | Msa1193910:CDS | 50.0% | |
| TTGCAATCTGCATGCCATCC+TGG | + | chr8_1:40752693-40752712 | None:intergenic | 50.0% | |
| TGATTCAAGGGACCTTGGTG+AGG | - | chr8_1:40753042-40753061 | Msa1193910:intron | 50.0% | |
| AGTGGACAGGGCAGAGAAAA+AGG | - | chr8_1:40753229-40753248 | Msa1193910:intron | 50.0% | |
| ACAGATGCTCAAAGCCATGC+TGG | + | chr8_1:40753313-40753332 | None:intergenic | 50.0% | |
| GGTGGGAATGGTTATCTGGG+TGG | - | chr8_1:40750202-40750221 | Msa1193910:CDS | 55.0% | |
| GCAATCACTTCCCCTGTCCT+TGG | + | chr8_1:40750494-40750513 | None:intergenic | 55.0% | |
| TGCTTTGCGTGCAGCTGCAA+CGG | + | chr8_1:40750555-40750574 | None:intergenic | 55.0% | |
| CACGAACCAATTGGCGTTGC+TGG | - | chr8_1:40751047-40751066 | Msa1193910:intron | 55.0% | |
| GTTGGACCAGCATTAGCGTG+TGG | - | chr8_1:40751116-40751135 | Msa1193910:intron | 55.0% | |
| GTGTTGCCACACGCTAATGC+TGG | + | chr8_1:40751125-40751144 | None:intergenic | 55.0% | |
| CAACACACCAGCAGGAAGTC+CGG | + | chr8_1:40751344-40751363 | None:intergenic | 55.0% | |
| !! | TCTGGCTTTGGTCCAACTGC+AGG | - | chr8_1:40751373-40751392 | Msa1193910:intron | 55.0% |
| CAGGGACAATGTTGCTGTGC+CGG | - | chr8_1:40752079-40752098 | Msa1193910:intron | 55.0% | |
| AGGGACAATGTTGCTGTGCC+GGG | - | chr8_1:40752080-40752099 | Msa1193910:intron | 55.0% | |
| GGCGCTACACTTGAAACTGG+AGG | - | chr8_1:40752508-40752527 | Msa1193910:intron | 55.0% | |
| !! | GTGTGGTCGACTTGCACCGA+TGG | + | chr8_1:40750280-40750299 | None:intergenic | 60.0% |
| CTATGCTGGTACGTGCGGTG+TGG | - | chr8_1:40750886-40750905 | Msa1193910:intron | 60.0% | |
| GGGCTCACAGTTCCAGCTGA+TGG | - | chr8_1:40751002-40751021 | Msa1193910:intron | 60.0% | |
| TTGTAGGCCGGACTTCCTGC+TGG | - | chr8_1:40751334-40751353 | Msa1193910:CDS | 60.0% | |
| GCAAGAGCAGCACCTGCAGT+TGG | + | chr8_1:40751388-40751407 | None:intergenic | 60.0% | |
| GCTGGTACGTGCGGTGTGGA+AGG | - | chr8_1:40750890-40750909 | Msa1193910:intron | 65.0% | |
| GGTACGTGCGGTGTGGAAGG+TGG | - | chr8_1:40750893-40750912 | Msa1193910:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 40749202 | 40753514 | 40749202 | ID=Msa1193910;Name=Msa1193910 |
| chr8_1 | mRNA | 40749202 | 40753514 | 40749202 | ID=Msa1193910-mRNA-1;Parent=Msa1193910;Name=Msa1193910-mRNA-1;_AED=0.10;_eAED=0.10;_QI=120|1|1|1|1|1|11|190|540 |
| chr8_1 | exon | 40749202 | 40749665 | 40749202 | ID=Msa1193910-mRNA-1:exon:13177;Parent=Msa1193910-mRNA-1 |
| chr8_1 | exon | 40749961 | 40750022 | 40749961 | ID=Msa1193910-mRNA-1:exon:13176;Parent=Msa1193910-mRNA-1 |
| chr8_1 | exon | 40750128 | 40750265 | 40750128 | ID=Msa1193910-mRNA-1:exon:13175;Parent=Msa1193910-mRNA-1 |
| chr8_1 | exon | 40750497 | 40750634 | 40750497 | ID=Msa1193910-mRNA-1:exon:13174;Parent=Msa1193910-mRNA-1 |
| chr8_1 | exon | 40750721 | 40750894 | 40750721 | ID=Msa1193910-mRNA-1:exon:13173;Parent=Msa1193910-mRNA-1 |
| chr8_1 | exon | 40751287 | 40751376 | 40751287 | ID=Msa1193910-mRNA-1:exon:13172;Parent=Msa1193910-mRNA-1 |
| chr8_1 | exon | 40751505 | 40751734 | 40751505 | ID=Msa1193910-mRNA-1:exon:13171;Parent=Msa1193910-mRNA-1 |
| chr8_1 | exon | 40751823 | 40751976 | 40751823 | ID=Msa1193910-mRNA-1:exon:13170;Parent=Msa1193910-mRNA-1 |
| chr8_1 | exon | 40752106 | 40752248 | 40752106 | ID=Msa1193910-mRNA-1:exon:13169;Parent=Msa1193910-mRNA-1 |
| chr8_1 | exon | 40752376 | 40752513 | 40752376 | ID=Msa1193910-mRNA-1:exon:13168;Parent=Msa1193910-mRNA-1 |
| chr8_1 | exon | 40753313 | 40753514 | 40753313 | ID=Msa1193910-mRNA-1:exon:13167;Parent=Msa1193910-mRNA-1 |
| chr8_1 | five_prime_UTR | 40753395 | 40753514 | 40753395 | ID=Msa1193910-mRNA-1:five_prime_utr;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40753313 | 40753394 | 40753313 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40752376 | 40752513 | 40752376 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40752106 | 40752248 | 40752106 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40751823 | 40751976 | 40751823 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40751505 | 40751734 | 40751505 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40751287 | 40751376 | 40751287 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40750721 | 40750894 | 40750721 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40750497 | 40750634 | 40750497 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40750128 | 40750265 | 40750128 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40749961 | 40750022 | 40749961 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | CDS | 40749392 | 40749665 | 40749392 | ID=Msa1193910-mRNA-1:cds;Parent=Msa1193910-mRNA-1 |
| chr8_1 | three_prime_UTR | 40749202 | 40749391 | 40749202 | ID=Msa1193910-mRNA-1:three_prime_utr;Parent=Msa1193910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
