Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258500 | AES67507.1 | 82.511 | 223 | 30 | 3 | 2 | 215 | 1 | 223 | 4.09e-119 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258500 | sp|Q9SKN5|ARFJ_ARATH | 69.714 | 175 | 34 | 6 | 58 | 215 | 2 | 174 | 8.34e-70 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258500 | G7IRU1 | 82.511 | 223 | 30 | 3 | 2 | 215 | 1 | 223 | 1.95e-119 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0258500 | Msa0824730 | 0.808511 | 2.987285e-50 | -8.615850e-47 |
| Msa0258500 | Msa0863800 | 0.801194 | 1.010015e-48 | -8.615850e-47 |
| Msa0258500 | Msa0993530 | 0.804450 | 2.147524e-49 | -8.615850e-47 |
| Msa0258500 | Msa1398860 | 0.815061 | 1.120881e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258500 | MtrunA17_Chr2g0326761 | 91.018 | 167 | 8 | 2 | 56 | 215 | 1 | 167 | 6.75e-101 | 310 |
| Msa0258500 | MtrunA17_Chr1g0199681 | 66.864 | 169 | 45 | 4 | 57 | 215 | 85 | 252 | 2.70e-71 | 232 |
| Msa0258500 | MtrunA17_Chr4g0028971 | 72.353 | 170 | 35 | 5 | 56 | 215 | 1 | 168 | 1.08e-70 | 231 |
| Msa0258500 | MtrunA17_Chr1g0181211 | 62.209 | 172 | 51 | 4 | 57 | 215 | 18 | 188 | 1.25e-67 | 223 |
| Msa0258500 | MtrunA17_Chr7g0264171 | 56.322 | 174 | 66 | 3 | 45 | 211 | 13 | 183 | 1.78e-59 | 199 |
| Msa0258500 | MtrunA17_Chr7g0264161 | 55.944 | 143 | 56 | 2 | 75 | 210 | 1 | 143 | 8.33e-49 | 164 |
| Msa0258500 | MtrunA17_Chr3g0115271 | 47.399 | 173 | 83 | 3 | 51 | 215 | 4 | 176 | 1.12e-41 | 151 |
| Msa0258500 | MtrunA17_Chr2g0285461 | 36.792 | 212 | 101 | 6 | 55 | 233 | 11 | 222 | 5.61e-34 | 130 |
| Msa0258500 | MtrunA17_Chr1g0156321 | 38.739 | 222 | 109 | 8 | 53 | 253 | 27 | 242 | 1.79e-33 | 129 |
| Msa0258500 | MtrunA17_Chr2g0277461 | 41.935 | 155 | 76 | 4 | 65 | 207 | 12 | 164 | 2.83e-33 | 126 |
| Msa0258500 | MtrunA17_Chr2g0289221 | 34.513 | 226 | 108 | 7 | 63 | 254 | 17 | 236 | 3.21e-33 | 124 |
| Msa0258500 | MtrunA17_Chr4g0070181 | 36.744 | 215 | 109 | 7 | 60 | 247 | 17 | 231 | 7.96e-33 | 127 |
| Msa0258500 | MtrunA17_Chr2g0301251 | 41.304 | 184 | 94 | 6 | 49 | 218 | 5 | 188 | 9.34e-33 | 127 |
| Msa0258500 | MtrunA17_Chr8g0376771 | 36.019 | 211 | 103 | 7 | 55 | 233 | 11 | 221 | 2.45e-32 | 126 |
| Msa0258500 | MtrunA17_Chr3g0109391 | 36.408 | 206 | 99 | 7 | 60 | 233 | 20 | 225 | 8.25e-32 | 124 |
| Msa0258500 | MtrunA17_Chr5g0433301 | 36.408 | 206 | 99 | 7 | 60 | 233 | 18 | 223 | 1.05e-31 | 124 |
| Msa0258500 | MtrunA17_Chr5g0417211 | 42.262 | 168 | 70 | 6 | 63 | 211 | 9 | 168 | 6.55e-31 | 119 |
| Msa0258500 | MtrunA17_Chr8g0385791 | 38.542 | 192 | 93 | 5 | 57 | 235 | 50 | 229 | 8.38e-30 | 118 |
| Msa0258500 | MtrunA17_Chr2g0276781 | 39.891 | 183 | 80 | 7 | 66 | 233 | 23 | 190 | 1.07e-29 | 118 |
| Msa0258500 | MtrunA17_Chr5g0424931 | 41.830 | 153 | 69 | 5 | 66 | 205 | 19 | 164 | 1.23e-28 | 114 |
| Msa0258500 | MtrunA17_Chr5g0417281 | 39.157 | 166 | 82 | 4 | 56 | 207 | 1 | 161 | 1.25e-28 | 114 |
| Msa0258500 | MtrunA17_Chr8g0389081 | 39.759 | 166 | 86 | 4 | 60 | 211 | 26 | 191 | 4.26e-28 | 114 |
| Msa0258500 | MtrunA17_Chr2g0282961 | 41.463 | 164 | 75 | 6 | 66 | 211 | 53 | 213 | 4.77e-28 | 113 |
| Msa0258500 | MtrunA17_Chr4g0046371 | 39.773 | 176 | 80 | 5 | 59 | 211 | 31 | 203 | 7.66e-28 | 112 |
| Msa0258500 | MtrunA17_Chr1g0178011 | 36.875 | 160 | 83 | 5 | 61 | 207 | 7 | 161 | 1.38e-27 | 110 |
| Msa0258500 | MtrunA17_Chr7g0239061 | 41.304 | 184 | 88 | 7 | 60 | 233 | 8 | 181 | 3.01e-27 | 111 |
| Msa0258500 | MtrunA17_Chr4g0029671 | 37.566 | 189 | 86 | 6 | 66 | 233 | 54 | 231 | 7.89e-27 | 110 |
| Msa0258500 | MtrunA17_Chr5g0436761 | 40.764 | 157 | 80 | 5 | 61 | 206 | 7 | 161 | 8.48e-27 | 108 |
| Msa0258500 | MtrunA17_Chr8g0346711 | 38.202 | 178 | 90 | 5 | 66 | 233 | 29 | 196 | 3.94e-26 | 107 |
| Msa0258500 | MtrunA17_Chr2g0326281 | 33.858 | 254 | 117 | 12 | 66 | 283 | 56 | 294 | 5.86e-26 | 107 |
| Msa0258500 | MtrunA17_Chr5g0425661 | 35.065 | 154 | 83 | 2 | 66 | 207 | 37 | 185 | 2.28e-25 | 101 |
| Msa0258500 | MtrunA17_Chr4g0009751 | 39.011 | 182 | 87 | 6 | 64 | 233 | 17 | 186 | 4.75e-25 | 104 |
| Msa0258500 | MtrunA17_Chr2g0277531 | 33.962 | 159 | 87 | 5 | 63 | 207 | 17 | 171 | 9.18e-24 | 98.6 |
| Msa0258500 | MtrunA17_Chr5g0425261 | 34.615 | 156 | 86 | 5 | 63 | 209 | 9 | 157 | 2.29e-20 | 89.7 |
| Msa0258500 | MtrunA17_Chr5g0424801 | 30.000 | 220 | 136 | 6 | 63 | 273 | 9 | 219 | 9.45e-20 | 88.2 |
| Msa0258500 | MtrunA17_Chr5g0424741 | 30.460 | 174 | 81 | 6 | 61 | 198 | 7 | 176 | 2.16e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258500 | AT2G28350.2 | 69.714 | 175 | 34 | 6 | 58 | 215 | 2 | 174 | 8.15e-71 | 231 |
| Msa0258500 | AT2G28350.1 | 69.714 | 175 | 34 | 6 | 58 | 215 | 2 | 174 | 8.48e-71 | 231 |
| Msa0258500 | AT4G30080.1 | 63.842 | 177 | 48 | 6 | 53 | 215 | 5 | 179 | 4.19e-68 | 224 |
| Msa0258500 | AT1G77850.2 | 40.854 | 164 | 83 | 4 | 60 | 211 | 13 | 174 | 3.93e-34 | 130 |
| Msa0258500 | AT1G77850.1 | 41.104 | 163 | 82 | 4 | 61 | 211 | 14 | 174 | 4.47e-34 | 130 |
| Msa0258500 | AT1G30330.1 | 35.514 | 214 | 106 | 5 | 52 | 233 | 9 | 222 | 3.64e-32 | 125 |
| Msa0258500 | AT1G19220.1 | 42.938 | 177 | 87 | 6 | 49 | 211 | 5 | 181 | 6.99e-32 | 125 |
| Msa0258500 | AT5G37020.2 | 41.714 | 175 | 88 | 5 | 58 | 218 | 14 | 188 | 8.15e-32 | 125 |
| Msa0258500 | AT5G37020.1 | 41.714 | 175 | 88 | 5 | 58 | 218 | 14 | 188 | 1.13e-31 | 124 |
| Msa0258500 | AT5G20730.3 | 38.983 | 177 | 95 | 5 | 55 | 218 | 13 | 189 | 1.79e-31 | 124 |
| Msa0258500 | AT5G20730.1 | 38.983 | 177 | 95 | 5 | 55 | 218 | 13 | 189 | 2.11e-31 | 124 |
| Msa0258500 | AT5G20730.2 | 38.983 | 177 | 95 | 5 | 55 | 218 | 13 | 189 | 2.12e-31 | 124 |
| Msa0258500 | AT1G30330.3 | 35.922 | 206 | 100 | 5 | 60 | 233 | 19 | 224 | 3.45e-31 | 123 |
| Msa0258500 | AT1G30330.2 | 35.922 | 206 | 100 | 5 | 60 | 233 | 19 | 224 | 3.45e-31 | 123 |
| Msa0258500 | AT5G60450.2 | 39.888 | 178 | 83 | 5 | 57 | 211 | 32 | 208 | 1.37e-28 | 115 |
| Msa0258500 | AT1G59750.1 | 40.449 | 178 | 86 | 6 | 66 | 233 | 22 | 189 | 2.13e-28 | 114 |
| Msa0258500 | AT1G59750.3 | 40.449 | 178 | 86 | 6 | 66 | 233 | 22 | 189 | 2.13e-28 | 114 |
| Msa0258500 | AT1G59750.2 | 40.449 | 178 | 86 | 6 | 66 | 233 | 22 | 189 | 2.18e-28 | 114 |
| Msa0258500 | AT1G59750.4 | 40.449 | 178 | 86 | 6 | 66 | 233 | 22 | 189 | 2.24e-28 | 114 |
| Msa0258500 | AT5G60450.1 | 40.828 | 169 | 76 | 5 | 66 | 211 | 65 | 232 | 3.63e-28 | 114 |
| Msa0258500 | AT2G33860.1 | 42.169 | 166 | 71 | 8 | 66 | 211 | 54 | 214 | 3.82e-28 | 114 |
| Msa0258500 | AT5G62000.4 | 37.313 | 201 | 85 | 7 | 59 | 235 | 48 | 231 | 1.14e-27 | 112 |
| Msa0258500 | AT5G62000.2 | 37.313 | 201 | 85 | 7 | 59 | 235 | 48 | 231 | 1.18e-27 | 112 |
| Msa0258500 | AT5G62000.5 | 37.313 | 201 | 85 | 7 | 59 | 235 | 48 | 231 | 1.18e-27 | 112 |
| Msa0258500 | AT5G62000.3 | 37.313 | 201 | 85 | 7 | 59 | 235 | 48 | 231 | 1.18e-27 | 112 |
| Msa0258500 | AT5G62000.1 | 37.313 | 201 | 85 | 7 | 59 | 235 | 48 | 231 | 1.18e-27 | 112 |
| Msa0258500 | AT1G19850.1 | 34.762 | 210 | 112 | 7 | 63 | 253 | 51 | 254 | 3.62e-27 | 111 |
| Msa0258500 | AT1G19850.2 | 34.762 | 210 | 112 | 7 | 63 | 253 | 40 | 243 | 3.78e-27 | 111 |
| Msa0258500 | AT2G46530.3 | 39.674 | 184 | 80 | 7 | 66 | 233 | 42 | 210 | 8.87e-26 | 107 |
| Msa0258500 | AT2G46530.1 | 39.674 | 184 | 80 | 7 | 66 | 233 | 21 | 189 | 1.05e-25 | 107 |
| Msa0258500 | AT4G23980.2 | 36.667 | 180 | 92 | 5 | 66 | 233 | 12 | 181 | 2.58e-25 | 105 |
| Msa0258500 | AT4G23980.1 | 36.667 | 180 | 92 | 5 | 66 | 233 | 12 | 181 | 2.74e-25 | 105 |
| Msa0258500 | AT3G61830.1 | 37.234 | 188 | 97 | 5 | 57 | 233 | 16 | 193 | 2.59e-24 | 102 |
| Msa0258500 | AT1G35540.1 | 32.558 | 172 | 97 | 5 | 66 | 223 | 27 | 193 | 4.96e-18 | 84.3 |
| Msa0258500 | AT1G43950.1 | 34.868 | 152 | 83 | 4 | 66 | 206 | 27 | 173 | 7.89e-18 | 80.9 |
| Msa0258500 | AT1G34310.1 | 34.211 | 152 | 84 | 4 | 66 | 206 | 27 | 173 | 5.08e-17 | 81.3 |
| Msa0258500 | AT1G34170.2 | 33.333 | 153 | 86 | 5 | 66 | 207 | 25 | 172 | 9.02e-17 | 80.5 |
| Msa0258500 | AT1G34170.1 | 33.333 | 153 | 86 | 5 | 66 | 207 | 25 | 172 | 1.11e-16 | 80.5 |
| Msa0258500 | AT1G34170.3 | 33.333 | 153 | 86 | 5 | 66 | 207 | 25 | 172 | 1.47e-16 | 80.1 |
| Msa0258500 | AT1G34410.1 | 34.437 | 151 | 83 | 4 | 66 | 205 | 27 | 172 | 3.38e-16 | 79.0 |
| Msa0258500 | AT1G35240.1 | 34.211 | 152 | 84 | 4 | 66 | 206 | 27 | 173 | 3.91e-16 | 79.0 |
| Msa0258500 | AT1G35520.1 | 33.553 | 152 | 85 | 4 | 66 | 206 | 27 | 173 | 1.62e-15 | 77.0 |
| Msa0258500 | AT1G34390.1 | 32.895 | 152 | 84 | 5 | 66 | 206 | 27 | 171 | 5.82e-15 | 75.5 |
| Msa0258500 | AT3G61830.2 | 39.098 | 133 | 66 | 4 | 106 | 233 | 20 | 142 | 8.97e-13 | 68.6 |
| Msa0258500 | AT5G37020.3 | 48.571 | 70 | 32 | 2 | 153 | 218 | 24 | 93 | 4.22e-12 | 67.0 |
Find 55 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATACTTCATCAGTTTC+AGG | 0.152637 | 2_2:+54845980 | None:intergenic |
| GCACAATCCAACGTTGATTT+TGG | 0.154632 | 2_2:-54846067 | Msa0258500:CDS |
| AAGGAAACAATTACAGCTTT+TGG | 0.228298 | 2_2:+54844881 | None:intergenic |
| TTCAAGCTCTGAATTTCTTA+AGG | 0.295501 | 2_2:+54845940 | None:intergenic |
| AGCTACCCCTTGCTTGAAAC+TGG | 0.336456 | 2_2:+54845095 | None:intergenic |
| TTTCTTTGTCTCTTATCCTT+TGG | 0.337813 | 2_2:+54846843 | None:intergenic |
| TCAAGCTCTGAATTTCTTAA+GGG | 0.365482 | 2_2:+54845941 | None:intergenic |
| AGAAGAAGCTTCTAAAATAT+CGG | 0.420921 | 2_2:-54844981 | Msa0258500:CDS |
| GCTTCTAAAATATCGGTAGA+AGG | 0.434502 | 2_2:-54844974 | Msa0258500:CDS |
| AAAATACTTCATCAGTTTCA+GGG | 0.442229 | 2_2:+54845981 | None:intergenic |
| AAAGCTTAGATCCACAACTA+TGG | 0.458962 | 2_2:-54846171 | Msa0258500:CDS |
| CAACTATGGCACGCATGTGC+TGG | 0.459997 | 2_2:-54846157 | Msa0258500:CDS |
| TTTGCAATCACCGTCTGAAC+CGG | 0.476719 | 2_2:+54845758 | None:intergenic |
| GGTTGGAAGAATCACGTTTG+TGG | 0.486012 | 2_2:-54846529 | Msa0258500:CDS |
| GAGAAAGAGAAGAAATCTGC+TGG | 0.496712 | 2_2:-54845058 | Msa0258500:CDS |
| AAAGTCTTTGCAAAAGATGC+AGG | 0.501554 | 2_2:+54845875 | None:intergenic |
| TGATTACTCGGCTGAGCCAC+CGG | 0.514373 | 2_2:-54845777 | Msa0258500:CDS |
| GCATGTTCTGCATGCCCTTG+TGG | 0.516128 | 2_2:+54846088 | None:intergenic |
| GGGTAGCTAAAATCTTCTGC+TGG | 0.521440 | 2_2:-54845080 | Msa0258500:CDS |
| TTCATGTTCCCATCTGCAGC+TGG | 0.528225 | 2_2:+54844920 | None:intergenic |
| AGTGCGGTAGAAAAGTGTAT+TGG | 0.531913 | 2_2:+54846492 | None:intergenic |
| AAAACTTCACCAGCTGCAGA+TGG | 0.540159 | 2_2:-54844929 | Msa0258500:CDS |
| ATCGTTTCAGCACAGTATCT+AGG | 0.540548 | 2_2:+54845812 | None:intergenic |
| AACACTTTCGTGTTCACTGA+TGG | 0.541563 | 2_2:+54846118 | None:intergenic |
| GCAGATGGGAACATGAATCC+AGG | 0.554878 | 2_2:-54844914 | Msa0258500:CDS |
| GGCTGAGCCACCGGTTCAGA+CGG | 0.555712 | 2_2:-54845768 | Msa0258500:CDS |
| TTGCGGCCAGTTTCAAGCAA+GGG | 0.561050 | 2_2:-54845101 | Msa0258500:CDS |
| GCACATGCGTGCCATAGTTG+TGG | 0.562709 | 2_2:+54846160 | None:intergenic |
| GTGATTGCAAAGGATGTTCA+CGG | 0.562856 | 2_2:-54845746 | Msa0258500:CDS |
| TCTGATGCAAACAATGGTGG+AGG | 0.563598 | 2_2:-54845845 | Msa0258500:CDS |
| TCTTCTGTTGCCTCTCAAGA+TGG | 0.565546 | 2_2:-54845031 | Msa0258500:intron |
| CCTTGTTGATGAAGTAAACA+AGG | 0.566952 | 2_2:-54846761 | Msa0258500:intron |
| GCAATCACCGTCTGAACCGG+TGG | 0.571079 | 2_2:+54845761 | None:intergenic |
| CCTTGTTTACTTCATCAACA+AGG | 0.579335 | 2_2:+54846761 | None:intergenic |
| CTTGGTTAATCAGATTATTG+CGG | 0.581437 | 2_2:-54845118 | Msa0258500:intron |
| ACCACTCATCCTCTGTAGAG+TGG | 0.584023 | 2_2:-54846026 | Msa0258500:CDS |
| TGCGGCCAGTTTCAAGCAAG+GGG | 0.591512 | 2_2:-54845100 | Msa0258500:CDS |
| ATTGCGGCCAGTTTCAAGCA+AGG | 0.596312 | 2_2:-54845102 | Msa0258500:CDS |
| AGAATCTCCAAAATCAACGT+TGG | 0.597430 | 2_2:+54846060 | None:intergenic |
| GCACGCATGTGCTGGAGGAA+TGG | 0.600210 | 2_2:-54846149 | Msa0258500:CDS |
| AAACTTCACCAGCTGCAGAT+GGG | 0.607165 | 2_2:-54844928 | Msa0258500:CDS |
| CTATGGCACGCATGTGCTGG+AGG | 0.612975 | 2_2:-54846154 | Msa0258500:CDS |
| ATCTGAATTACCATCTTGAG+AGG | 0.618919 | 2_2:+54845021 | None:intergenic |
| CAATCTGATGCAAACAATGG+TGG | 0.622207 | 2_2:-54845848 | Msa0258500:CDS |
| GCCACTCTACAGAGGATGAG+TGG | 0.626388 | 2_2:+54846025 | None:intergenic |
| GAGATCTGAGAGAAAACCAA+AGG | 0.626392 | 2_2:-54846859 | Msa0258500:five_prime_UTR |
| GGTTCAGACGGTGATTGCAA+AGG | 0.632078 | 2_2:-54845756 | Msa0258500:CDS |
| CTTGAAAATGATGATTCTGA+TGG | 0.634064 | 2_2:-54845923 | Msa0258500:CDS |
| CTGATGCAAACAATGGTGGA+GGG | 0.644135 | 2_2:-54845844 | Msa0258500:CDS |
| TGCAAAGGATGTTCACGGCG+AGG | 0.647596 | 2_2:-54845741 | Msa0258500:intron |
| AATGATGATTCTGATGGTCA+TGG | 0.651505 | 2_2:-54845917 | Msa0258500:CDS |
| TCACAGAAGCCACTCTACAG+AGG | 0.682462 | 2_2:+54846017 | None:intergenic |
| ACTCTACAGAGGATGAGTGG+TGG | 0.690773 | 2_2:+54846028 | None:intergenic |
| ACACAATCTGATGCAAACAA+TGG | 0.698582 | 2_2:-54845851 | Msa0258500:CDS |
| TCAGCCGAGTAATCAAGCCG+AGG | 0.714702 | 2_2:+54845785 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTCAATTTCCTATATAT+AGG | - | chr2_2:54846323-54846342 | Msa0258500:intron | 15.0% |
| !! | ATTTCAATTTCCTATATATA+GGG | - | chr2_2:54846324-54846343 | Msa0258500:intron | 15.0% |
| !!! | AGCAAATCATATTTAATTTA+AGG | - | chr2_2:54846495-54846514 | Msa0258500:CDS | 15.0% |
| !!! | GTAAGATTTTATATTCAAAA+TGG | - | chr2_2:54846536-54846555 | Msa0258500:CDS | 15.0% |
| !!! | GAATTAATTTTTTTATCTCT+TGG | - | chr2_2:54846629-54846648 | Msa0258500:intron | 15.0% |
| !! | TATTTCAATTTCCTATATAT+AGG | - | chr2_2:54846323-54846342 | Msa0258500:intron | 15.0% |
| !! | ATTTCAATTTCCTATATATA+GGG | - | chr2_2:54846324-54846343 | Msa0258500:intron | 15.0% |
| !!! | AGCAAATCATATTTAATTTA+AGG | - | chr2_2:54846495-54846514 | Msa0258500:CDS | 15.0% |
| !!! | GTAAGATTTTATATTCAAAA+TGG | - | chr2_2:54846536-54846555 | Msa0258500:CDS | 15.0% |
| !!! | GAATTAATTTTTTTATCTCT+TGG | - | chr2_2:54846629-54846648 | Msa0258500:intron | 15.0% |
| !!! | AATCAAACAAGATCTAAAAT+GGG | + | chr2_2:54845452-54845471 | None:intergenic | 20.0% |
| !! | AAATCAAACAAGATCTAAAA+TGG | + | chr2_2:54845453-54845472 | None:intergenic | 20.0% |
| !! | ATGCAAAATTTAATCAGATT+TGG | + | chr2_2:54846230-54846249 | None:intergenic | 20.0% |
| !! | GAATATAAAATCTTACATGT+CGG | + | chr2_2:54846532-54846551 | None:intergenic | 20.0% |
| !! | TAACAGATTAAAGTTTATGT+TGG | + | chr2_2:54846567-54846586 | None:intergenic | 20.0% |
| !!! | AATCAAACAAGATCTAAAAT+GGG | + | chr2_2:54845452-54845471 | None:intergenic | 20.0% |
| !! | AAATCAAACAAGATCTAAAA+TGG | + | chr2_2:54845453-54845472 | None:intergenic | 20.0% |
| !! | ATGCAAAATTTAATCAGATT+TGG | + | chr2_2:54846230-54846249 | None:intergenic | 20.0% |
| !! | GAATATAAAATCTTACATGT+CGG | + | chr2_2:54846532-54846551 | None:intergenic | 20.0% |
| !! | TAACAGATTAAAGTTTATGT+TGG | + | chr2_2:54846567-54846586 | None:intergenic | 20.0% |
| ! | ACAATTCAGTACTATTGTTA+TGG | + | chr2_2:54845051-54845070 | None:intergenic | 25.0% |
| !! | AACAATAGTACTGAATTGTT+TGG | - | chr2_2:54845052-54845071 | Msa0258500:CDS | 25.0% |
| ! | ATAGAAAACCAGTTGAAAAA+AGG | - | chr2_2:54845132-54845151 | Msa0258500:intron | 25.0% |
| !!! | TGAATTTTCCTTTTTTCAAC+TGG | + | chr2_2:54845143-54845162 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAAATTCAGAAC+AGG | - | chr2_2:54845147-54845166 | Msa0258500:intron | 25.0% |
| !!! | TTTGCTCTGTTTTATTTCAA+TGG | - | chr2_2:54845354-54845373 | Msa0258500:intron | 25.0% |
| ! | AAAATACTTCATCAGTTTCA+GGG | + | chr2_2:54845787-54845806 | None:intergenic | 25.0% |
| ! | TTTCAGATACTTTCTTTATC+TGG | - | chr2_2:54846351-54846370 | Msa0258500:intron | 25.0% |
| !!! | AGAAGAAGCTTCTAAAATAT+CGG | - | chr2_2:54846784-54846803 | Msa0258500:exon | 25.0% |
| ! | ACAATTCAGTACTATTGTTA+TGG | + | chr2_2:54845051-54845070 | None:intergenic | 25.0% |
| !! | AACAATAGTACTGAATTGTT+TGG | - | chr2_2:54845052-54845071 | Msa0258500:CDS | 25.0% |
| ! | ATAGAAAACCAGTTGAAAAA+AGG | - | chr2_2:54845132-54845151 | Msa0258500:intron | 25.0% |
| !!! | TGAATTTTCCTTTTTTCAAC+TGG | + | chr2_2:54845143-54845162 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAAATTCAGAAC+AGG | - | chr2_2:54845147-54845166 | Msa0258500:intron | 25.0% |
| !!! | TTTGCTCTGTTTTATTTCAA+TGG | - | chr2_2:54845354-54845373 | Msa0258500:intron | 25.0% |
| ! | AAAATACTTCATCAGTTTCA+GGG | + | chr2_2:54845787-54845806 | None:intergenic | 25.0% |
| ! | TTTCAGATACTTTCTTTATC+TGG | - | chr2_2:54846351-54846370 | Msa0258500:intron | 25.0% |
| !!! | AGAAGAAGCTTCTAAAATAT+CGG | - | chr2_2:54846784-54846803 | Msa0258500:exon | 25.0% |
| TCAGAGAGAAAAAGAAGAAA+GGG | + | chr2_2:54844888-54844907 | None:intergenic | 30.0% | |
| TTTCTTTGTCTCTTATCCTT+TGG | + | chr2_2:54844925-54844944 | None:intergenic | 30.0% | |
| !! | TACTCACTATCTCATTTTTC+AGG | - | chr2_2:54845090-54845109 | Msa0258500:CDS | 30.0% |
| ! | AAGTTTCTGTCTTTCTTTTG+TGG | - | chr2_2:54845213-54845232 | Msa0258500:intron | 30.0% |
| ! | AGTTTCTGTCTTTCTTTTGT+GGG | - | chr2_2:54845214-54845233 | Msa0258500:intron | 30.0% |
| !!! | ACTTTTTTCACTCAACTTGA+AGG | - | chr2_2:54845293-54845312 | Msa0258500:intron | 30.0% |
| !! | AAAGTGTTTTACTTTCCACA+AGG | - | chr2_2:54845662-54845681 | Msa0258500:intron | 30.0% |
| ! | AAGTGTTTTACTTTCCACAA+GGG | - | chr2_2:54845663-54845682 | Msa0258500:intron | 30.0% |
| GAAAATACTTCATCAGTTTC+AGG | + | chr2_2:54845788-54845807 | None:intergenic | 30.0% | |
| !! | TCAAGCTCTGAATTTCTTAA+GGG | + | chr2_2:54845827-54845846 | None:intergenic | 30.0% |
| !! | TTCAAGCTCTGAATTTCTTA+AGG | + | chr2_2:54845828-54845847 | None:intergenic | 30.0% |
| CTTGAAAATGATGATTCTGA+TGG | - | chr2_2:54845842-54845861 | Msa0258500:CDS | 30.0% | |
| AAGTTTAGGCATATCTATAG+AGG | - | chr2_2:54846052-54846071 | Msa0258500:CDS | 30.0% | |
| CTGAAATTCTCCCTATATAT+AGG | + | chr2_2:54846337-54846356 | None:intergenic | 30.0% | |
| !! | AGAAGTATTTCCATTATCGT+CGG | + | chr2_2:54846441-54846460 | None:intergenic | 30.0% |
| !! | ATGATTTGCTTACATCAACA+GGG | + | chr2_2:54846485-54846504 | None:intergenic | 30.0% |
| !! | TATGATTTGCTTACATCAAC+AGG | + | chr2_2:54846486-54846505 | None:intergenic | 30.0% |
| CTTGGTTAATCAGATTATTG+CGG | - | chr2_2:54846647-54846666 | Msa0258500:intron | 30.0% | |
| TGGTAATTCAGATTCGATAA+AGG | - | chr2_2:54846754-54846773 | Msa0258500:intron | 30.0% | |
| !!! | GCTTTTGGAATATAATTTCC+TGG | + | chr2_2:54846872-54846891 | None:intergenic | 30.0% |
| ! | AAGGAAACAATTACAGCTTT+TGG | + | chr2_2:54846887-54846906 | None:intergenic | 30.0% |
| TCAGAGAGAAAAAGAAGAAA+GGG | + | chr2_2:54844888-54844907 | None:intergenic | 30.0% | |
| TTTCTTTGTCTCTTATCCTT+TGG | + | chr2_2:54844925-54844944 | None:intergenic | 30.0% | |
| !! | TACTCACTATCTCATTTTTC+AGG | - | chr2_2:54845090-54845109 | Msa0258500:CDS | 30.0% |
| ! | AAGTTTCTGTCTTTCTTTTG+TGG | - | chr2_2:54845213-54845232 | Msa0258500:intron | 30.0% |
| ! | AGTTTCTGTCTTTCTTTTGT+GGG | - | chr2_2:54845214-54845233 | Msa0258500:intron | 30.0% |
| !!! | ACTTTTTTCACTCAACTTGA+AGG | - | chr2_2:54845293-54845312 | Msa0258500:intron | 30.0% |
| !! | AAAGTGTTTTACTTTCCACA+AGG | - | chr2_2:54845662-54845681 | Msa0258500:intron | 30.0% |
| ! | AAGTGTTTTACTTTCCACAA+GGG | - | chr2_2:54845663-54845682 | Msa0258500:intron | 30.0% |
| GAAAATACTTCATCAGTTTC+AGG | + | chr2_2:54845788-54845807 | None:intergenic | 30.0% | |
| !! | TCAAGCTCTGAATTTCTTAA+GGG | + | chr2_2:54845827-54845846 | None:intergenic | 30.0% |
| !! | TTCAAGCTCTGAATTTCTTA+AGG | + | chr2_2:54845828-54845847 | None:intergenic | 30.0% |
| CTTGAAAATGATGATTCTGA+TGG | - | chr2_2:54845842-54845861 | Msa0258500:CDS | 30.0% | |
| AAGTTTAGGCATATCTATAG+AGG | - | chr2_2:54846052-54846071 | Msa0258500:CDS | 30.0% | |
| CTGAAATTCTCCCTATATAT+AGG | + | chr2_2:54846337-54846356 | None:intergenic | 30.0% | |
| !! | AGAAGTATTTCCATTATCGT+CGG | + | chr2_2:54846441-54846460 | None:intergenic | 30.0% |
| !! | ATGATTTGCTTACATCAACA+GGG | + | chr2_2:54846485-54846504 | None:intergenic | 30.0% |
| !! | TATGATTTGCTTACATCAAC+AGG | + | chr2_2:54846486-54846505 | None:intergenic | 30.0% |
| CTTGGTTAATCAGATTATTG+CGG | - | chr2_2:54846647-54846666 | Msa0258500:intron | 30.0% | |
| TGGTAATTCAGATTCGATAA+AGG | - | chr2_2:54846754-54846773 | Msa0258500:intron | 30.0% | |
| !!! | GCTTTTGGAATATAATTTCC+TGG | + | chr2_2:54846872-54846891 | None:intergenic | 30.0% |
| ! | AAGGAAACAATTACAGCTTT+TGG | + | chr2_2:54846887-54846906 | None:intergenic | 30.0% |
| CTCAGAGAGAAAAAGAAGAA+AGG | + | chr2_2:54844889-54844908 | None:intergenic | 35.0% | |
| ! | CCTTGTTTACTTCATCAACA+AGG | + | chr2_2:54845007-54845026 | None:intergenic | 35.0% |
| ! | CCTTGTTGATGAAGTAAACA+AGG | - | chr2_2:54845004-54845023 | Msa0258500:intron | 35.0% |
| ! | GTTTCTGTCTTTCTTTTGTG+GGG | - | chr2_2:54845215-54845234 | Msa0258500:intron | 35.0% |
| ! | CAAGTTGAGTGAAAAAAGTG+CGG | + | chr2_2:54845292-54845311 | None:intergenic | 35.0% |
| CACTCAACTTGAAGGTAAAA+AGG | - | chr2_2:54845301-54845320 | Msa0258500:intron | 35.0% | |
| ! | CTTTTCTCAGCTTCTTTCAT+TGG | + | chr2_2:54845578-54845597 | None:intergenic | 35.0% |
| AAAGCTTAGATCCACAACTA+TGG | - | chr2_2:54845594-54845613 | Msa0258500:intron | 35.0% | |
| AGAATCTCCAAAATCAACGT+TGG | + | chr2_2:54845708-54845727 | None:intergenic | 35.0% | |
| AATGATGATTCTGATGGTCA+TGG | - | chr2_2:54845848-54845867 | Msa0258500:CDS | 35.0% | |
| AAAGTCTTTGCAAAAGATGC+AGG | + | chr2_2:54845893-54845912 | None:intergenic | 35.0% | |
| ACACAATCTGATGCAAACAA+TGG | - | chr2_2:54845914-54845933 | Msa0258500:CDS | 35.0% | |
| ATATCTATAGAGGAACACCA+AGG | - | chr2_2:54846062-54846081 | Msa0258500:CDS | 35.0% | |
| ATTATCGTCGGTCAACATAA+AGG | + | chr2_2:54846429-54846448 | None:intergenic | 35.0% | |
| TTTATGTTGACCGACGATAA+TGG | - | chr2_2:54846428-54846447 | Msa0258500:intron | 35.0% | |
| !! | GACGATAATGGAAATACTTC+TGG | - | chr2_2:54846440-54846459 | Msa0258500:intron | 35.0% |
| AATCTGTTAGAGAAAACGAC+AGG | - | chr2_2:54846578-54846597 | Msa0258500:intron | 35.0% | |
| ATCTGAATTACCATCTTGAG+AGG | + | chr2_2:54846747-54846766 | None:intergenic | 35.0% | |
| !! | GCTTCTAAAATATCGGTAGA+AGG | - | chr2_2:54846791-54846810 | Msa0258500:exon | 35.0% |
| CTCAGAGAGAAAAAGAAGAA+AGG | + | chr2_2:54844889-54844908 | None:intergenic | 35.0% | |
| ! | CCTTGTTTACTTCATCAACA+AGG | + | chr2_2:54845007-54845026 | None:intergenic | 35.0% |
| ! | CCTTGTTGATGAAGTAAACA+AGG | - | chr2_2:54845004-54845023 | Msa0258500:intron | 35.0% |
| ! | GTTTCTGTCTTTCTTTTGTG+GGG | - | chr2_2:54845215-54845234 | Msa0258500:intron | 35.0% |
| ! | CAAGTTGAGTGAAAAAAGTG+CGG | + | chr2_2:54845292-54845311 | None:intergenic | 35.0% |
| CACTCAACTTGAAGGTAAAA+AGG | - | chr2_2:54845301-54845320 | Msa0258500:intron | 35.0% | |
| ! | CTTTTCTCAGCTTCTTTCAT+TGG | + | chr2_2:54845578-54845597 | None:intergenic | 35.0% |
| AAAGCTTAGATCCACAACTA+TGG | - | chr2_2:54845594-54845613 | Msa0258500:intron | 35.0% | |
| AGAATCTCCAAAATCAACGT+TGG | + | chr2_2:54845708-54845727 | None:intergenic | 35.0% | |
| AATGATGATTCTGATGGTCA+TGG | - | chr2_2:54845848-54845867 | Msa0258500:CDS | 35.0% | |
| AAAGTCTTTGCAAAAGATGC+AGG | + | chr2_2:54845893-54845912 | None:intergenic | 35.0% | |
| ACACAATCTGATGCAAACAA+TGG | - | chr2_2:54845914-54845933 | Msa0258500:CDS | 35.0% | |
| ATATCTATAGAGGAACACCA+AGG | - | chr2_2:54846062-54846081 | Msa0258500:CDS | 35.0% | |
| ATTATCGTCGGTCAACATAA+AGG | + | chr2_2:54846429-54846448 | None:intergenic | 35.0% | |
| TTTATGTTGACCGACGATAA+TGG | - | chr2_2:54846428-54846447 | Msa0258500:intron | 35.0% | |
| !! | GACGATAATGGAAATACTTC+TGG | - | chr2_2:54846440-54846459 | Msa0258500:intron | 35.0% |
| AATCTGTTAGAGAAAACGAC+AGG | - | chr2_2:54846578-54846597 | Msa0258500:intron | 35.0% | |
| ATCTGAATTACCATCTTGAG+AGG | + | chr2_2:54846747-54846766 | None:intergenic | 35.0% | |
| !! | GCTTCTAAAATATCGGTAGA+AGG | - | chr2_2:54846791-54846810 | Msa0258500:exon | 35.0% |
| GAGATCTGAGAGAAAACCAA+AGG | - | chr2_2:54844906-54844925 | Msa0258500:CDS | 40.0% | |
| ! | AGTGCGGTAGAAAAGTGTAT+TGG | + | chr2_2:54845276-54845295 | None:intergenic | 40.0% |
| AACACTTTCGTGTTCACTGA+TGG | + | chr2_2:54845650-54845669 | None:intergenic | 40.0% | |
| !!! | GCACAATCCAACGTTGATTT+TGG | - | chr2_2:54845698-54845717 | Msa0258500:intron | 40.0% |
| CAATCTGATGCAAACAATGG+TGG | - | chr2_2:54845917-54845936 | Msa0258500:CDS | 40.0% | |
| ATCGTTTCAGCACAGTATCT+AGG | + | chr2_2:54845956-54845975 | None:intergenic | 40.0% | |
| ! | GTGCTGAAACGATTTTTCCT+CGG | - | chr2_2:54845963-54845982 | Msa0258500:intron | 40.0% |
| !! | TTTTCCTCGGCTTGATTACT+CGG | - | chr2_2:54845976-54845995 | Msa0258500:intron | 40.0% |
| GTGATTGCAAAGGATGTTCA+CGG | - | chr2_2:54846019-54846038 | Msa0258500:CDS | 40.0% | |
| GTTGTTAACAAATGCCTCCT+TGG | + | chr2_2:54846082-54846101 | None:intergenic | 40.0% | |
| !! | AGGAGGCATTTGTTAACAAC+TGG | - | chr2_2:54846082-54846101 | Msa0258500:CDS | 40.0% |
| ! | GGCATTTGTTAACAACTGGT+TGG | - | chr2_2:54846086-54846105 | Msa0258500:CDS | 40.0% |
| GAGAAAGAGAAGAAATCTGC+TGG | - | chr2_2:54846707-54846726 | Msa0258500:intron | 40.0% | |
| GAGATCTGAGAGAAAACCAA+AGG | - | chr2_2:54844906-54844925 | Msa0258500:CDS | 40.0% | |
| ! | AGTGCGGTAGAAAAGTGTAT+TGG | + | chr2_2:54845276-54845295 | None:intergenic | 40.0% |
| AACACTTTCGTGTTCACTGA+TGG | + | chr2_2:54845650-54845669 | None:intergenic | 40.0% | |
| !!! | GCACAATCCAACGTTGATTT+TGG | - | chr2_2:54845698-54845717 | Msa0258500:intron | 40.0% |
| CAATCTGATGCAAACAATGG+TGG | - | chr2_2:54845917-54845936 | Msa0258500:CDS | 40.0% | |
| ATCGTTTCAGCACAGTATCT+AGG | + | chr2_2:54845956-54845975 | None:intergenic | 40.0% | |
| ! | GTGCTGAAACGATTTTTCCT+CGG | - | chr2_2:54845963-54845982 | Msa0258500:intron | 40.0% |
| !! | TTTTCCTCGGCTTGATTACT+CGG | - | chr2_2:54845976-54845995 | Msa0258500:intron | 40.0% |
| GTGATTGCAAAGGATGTTCA+CGG | - | chr2_2:54846019-54846038 | Msa0258500:CDS | 40.0% | |
| GTTGTTAACAAATGCCTCCT+TGG | + | chr2_2:54846082-54846101 | None:intergenic | 40.0% | |
| !! | AGGAGGCATTTGTTAACAAC+TGG | - | chr2_2:54846082-54846101 | Msa0258500:CDS | 40.0% |
| ! | GGCATTTGTTAACAACTGGT+TGG | - | chr2_2:54846086-54846105 | Msa0258500:CDS | 40.0% |
| GAGAAAGAGAAGAAATCTGC+TGG | - | chr2_2:54846707-54846726 | Msa0258500:intron | 40.0% | |
| ! | CTGTCTTTCTTTTGTGGGGT+TGG | - | chr2_2:54845219-54845238 | Msa0258500:intron | 45.0% |
| GGTTGGAAGAATCACGTTTG+TGG | - | chr2_2:54845236-54845255 | Msa0258500:intron | 45.0% | |
| TCTGATGCAAACAATGGTGG+AGG | - | chr2_2:54845920-54845939 | Msa0258500:CDS | 45.0% | |
| ! | CTGATGCAAACAATGGTGGA+GGG | - | chr2_2:54845921-54845940 | Msa0258500:CDS | 45.0% |
| TTTGCAATCACCGTCTGAAC+CGG | + | chr2_2:54846010-54846029 | None:intergenic | 45.0% | |
| TCTATAGAGGAACACCAAGG+AGG | - | chr2_2:54846065-54846084 | Msa0258500:CDS | 45.0% | |
| !! | TCATGTCTCGTTGATGACGA+TGG | - | chr2_2:54846375-54846394 | Msa0258500:intron | 45.0% |
| GATGACGATGGTTGGATTGT+CGG | - | chr2_2:54846387-54846406 | Msa0258500:intron | 45.0% | |
| ATGACGATGGTTGGATTGTC+GGG | - | chr2_2:54846388-54846407 | Msa0258500:intron | 45.0% | |
| TTTGCTTACATCAACAGGGC+CGG | + | chr2_2:54846481-54846500 | None:intergenic | 45.0% | |
| GGGTAGCTAAAATCTTCTGC+TGG | - | chr2_2:54846685-54846704 | Msa0258500:intron | 45.0% | |
| TCTTCTGTTGCCTCTCAAGA+TGG | - | chr2_2:54846734-54846753 | Msa0258500:intron | 45.0% | |
| ! | TCTGCAGCTGGTGAAGTTTT+TGG | + | chr2_2:54846836-54846855 | None:intergenic | 45.0% |
| AAAACTTCACCAGCTGCAGA+TGG | - | chr2_2:54846836-54846855 | Msa0258500:five_prime_UTR | 45.0% | |
| AAACTTCACCAGCTGCAGAT+GGG | - | chr2_2:54846837-54846856 | Msa0258500:five_prime_UTR | 45.0% | |
| ! | CTGTCTTTCTTTTGTGGGGT+TGG | - | chr2_2:54845219-54845238 | Msa0258500:intron | 45.0% |
| GGTTGGAAGAATCACGTTTG+TGG | - | chr2_2:54845236-54845255 | Msa0258500:intron | 45.0% | |
| TCTGATGCAAACAATGGTGG+AGG | - | chr2_2:54845920-54845939 | Msa0258500:CDS | 45.0% | |
| ! | CTGATGCAAACAATGGTGGA+GGG | - | chr2_2:54845921-54845940 | Msa0258500:CDS | 45.0% |
| TTTGCAATCACCGTCTGAAC+CGG | + | chr2_2:54846010-54846029 | None:intergenic | 45.0% | |
| TCTATAGAGGAACACCAAGG+AGG | - | chr2_2:54846065-54846084 | Msa0258500:CDS | 45.0% | |
| !! | TCATGTCTCGTTGATGACGA+TGG | - | chr2_2:54846375-54846394 | Msa0258500:intron | 45.0% |
| GATGACGATGGTTGGATTGT+CGG | - | chr2_2:54846387-54846406 | Msa0258500:intron | 45.0% | |
| ATGACGATGGTTGGATTGTC+GGG | - | chr2_2:54846388-54846407 | Msa0258500:intron | 45.0% | |
| TTTGCTTACATCAACAGGGC+CGG | + | chr2_2:54846481-54846500 | None:intergenic | 45.0% | |
| GGGTAGCTAAAATCTTCTGC+TGG | - | chr2_2:54846685-54846704 | Msa0258500:intron | 45.0% | |
| TCTTCTGTTGCCTCTCAAGA+TGG | - | chr2_2:54846734-54846753 | Msa0258500:intron | 45.0% | |
| ! | TCTGCAGCTGGTGAAGTTTT+TGG | + | chr2_2:54846836-54846855 | None:intergenic | 45.0% |
| AAAACTTCACCAGCTGCAGA+TGG | - | chr2_2:54846836-54846855 | Msa0258500:five_prime_UTR | 45.0% | |
| AAACTTCACCAGCTGCAGAT+GGG | - | chr2_2:54846837-54846856 | Msa0258500:five_prime_UTR | 45.0% | |
| ACTCTACAGAGGATGAGTGG+TGG | + | chr2_2:54845740-54845759 | None:intergenic | 50.0% | |
| ACCACTCATCCTCTGTAGAG+TGG | - | chr2_2:54845739-54845758 | Msa0258500:intron | 50.0% | |
| TCACAGAAGCCACTCTACAG+AGG | + | chr2_2:54845751-54845770 | None:intergenic | 50.0% | |
| GGTTCAGACGGTGATTGCAA+AGG | - | chr2_2:54846009-54846028 | Msa0258500:CDS | 50.0% | |
| ACGGCGAGGTTTGGAAGTTT+AGG | - | chr2_2:54846038-54846057 | Msa0258500:CDS | 50.0% | |
| !! | GTCTCGTTGATGACGATGGT+TGG | - | chr2_2:54846379-54846398 | Msa0258500:intron | 50.0% |
| ATTGCGGCCAGTTTCAAGCA+AGG | - | chr2_2:54846663-54846682 | Msa0258500:intron | 50.0% | |
| TTGCGGCCAGTTTCAAGCAA+GGG | - | chr2_2:54846664-54846683 | Msa0258500:intron | 50.0% | |
| AGCTACCCCTTGCTTGAAAC+TGG | + | chr2_2:54846673-54846692 | None:intergenic | 50.0% | |
| TTCATGTTCCCATCTGCAGC+TGG | + | chr2_2:54846848-54846867 | None:intergenic | 50.0% | |
| GCAGATGGGAACATGAATCC+AGG | - | chr2_2:54846851-54846870 | Msa0258500:five_prime_UTR | 50.0% | |
| ACTCTACAGAGGATGAGTGG+TGG | + | chr2_2:54845740-54845759 | None:intergenic | 50.0% | |
| ACCACTCATCCTCTGTAGAG+TGG | - | chr2_2:54845739-54845758 | Msa0258500:intron | 50.0% | |
| TCACAGAAGCCACTCTACAG+AGG | + | chr2_2:54845751-54845770 | None:intergenic | 50.0% | |
| GGTTCAGACGGTGATTGCAA+AGG | - | chr2_2:54846009-54846028 | Msa0258500:CDS | 50.0% | |
| ACGGCGAGGTTTGGAAGTTT+AGG | - | chr2_2:54846038-54846057 | Msa0258500:CDS | 50.0% | |
| !! | GTCTCGTTGATGACGATGGT+TGG | - | chr2_2:54846379-54846398 | Msa0258500:intron | 50.0% |
| ATTGCGGCCAGTTTCAAGCA+AGG | - | chr2_2:54846663-54846682 | Msa0258500:intron | 50.0% | |
| TTGCGGCCAGTTTCAAGCAA+GGG | - | chr2_2:54846664-54846683 | Msa0258500:intron | 50.0% | |
| AGCTACCCCTTGCTTGAAAC+TGG | + | chr2_2:54846673-54846692 | None:intergenic | 50.0% | |
| TTCATGTTCCCATCTGCAGC+TGG | + | chr2_2:54846848-54846867 | None:intergenic | 50.0% | |
| GCAGATGGGAACATGAATCC+AGG | - | chr2_2:54846851-54846870 | Msa0258500:five_prime_UTR | 50.0% | |
| GCACATGCGTGCCATAGTTG+TGG | + | chr2_2:54845608-54845627 | None:intergenic | 55.0% | |
| CAACTATGGCACGCATGTGC+TGG | - | chr2_2:54845608-54845627 | Msa0258500:intron | 55.0% | |
| GCATGTTCTGCATGCCCTTG+TGG | + | chr2_2:54845680-54845699 | None:intergenic | 55.0% | |
| GCCACTCTACAGAGGATGAG+TGG | + | chr2_2:54845743-54845762 | None:intergenic | 55.0% | |
| TCAGCCGAGTAATCAAGCCG+AGG | + | chr2_2:54845983-54846002 | None:intergenic | 55.0% | |
| TGATTACTCGGCTGAGCCAC+CGG | - | chr2_2:54845988-54846007 | Msa0258500:CDS | 55.0% | |
| TGCAAAGGATGTTCACGGCG+AGG | - | chr2_2:54846024-54846043 | Msa0258500:CDS | 55.0% | |
| AGGATGTTCACGGCGAGGTT+TGG | - | chr2_2:54846029-54846048 | Msa0258500:CDS | 55.0% | |
| CTGGAAATATCCCCAGCGAC+CGG | - | chr2_2:54846459-54846478 | Msa0258500:intron | 55.0% | |
| TGCGGCCAGTTTCAAGCAAG+GGG | - | chr2_2:54846665-54846684 | Msa0258500:intron | 55.0% | |
| GCACATGCGTGCCATAGTTG+TGG | + | chr2_2:54845608-54845627 | None:intergenic | 55.0% | |
| CAACTATGGCACGCATGTGC+TGG | - | chr2_2:54845608-54845627 | Msa0258500:intron | 55.0% | |
| GCATGTTCTGCATGCCCTTG+TGG | + | chr2_2:54845680-54845699 | None:intergenic | 55.0% | |
| GCCACTCTACAGAGGATGAG+TGG | + | chr2_2:54845743-54845762 | None:intergenic | 55.0% | |
| TCAGCCGAGTAATCAAGCCG+AGG | + | chr2_2:54845983-54846002 | None:intergenic | 55.0% | |
| TGATTACTCGGCTGAGCCAC+CGG | - | chr2_2:54845988-54846007 | Msa0258500:CDS | 55.0% | |
| TGCAAAGGATGTTCACGGCG+AGG | - | chr2_2:54846024-54846043 | Msa0258500:CDS | 55.0% | |
| AGGATGTTCACGGCGAGGTT+TGG | - | chr2_2:54846029-54846048 | Msa0258500:CDS | 55.0% | |
| CTGGAAATATCCCCAGCGAC+CGG | - | chr2_2:54846459-54846478 | Msa0258500:intron | 55.0% | |
| TGCGGCCAGTTTCAAGCAAG+GGG | - | chr2_2:54846665-54846684 | Msa0258500:intron | 55.0% | |
| CTATGGCACGCATGTGCTGG+AGG | - | chr2_2:54845611-54845630 | Msa0258500:intron | 60.0% | |
| GCACGCATGTGCTGGAGGAA+TGG | - | chr2_2:54845616-54845635 | Msa0258500:intron | 60.0% | |
| GCAATCACCGTCTGAACCGG+TGG | + | chr2_2:54846007-54846026 | None:intergenic | 60.0% | |
| CTATGGCACGCATGTGCTGG+AGG | - | chr2_2:54845611-54845630 | Msa0258500:intron | 60.0% | |
| GCACGCATGTGCTGGAGGAA+TGG | - | chr2_2:54845616-54845635 | Msa0258500:intron | 60.0% | |
| GCAATCACCGTCTGAACCGG+TGG | + | chr2_2:54846007-54846026 | None:intergenic | 60.0% | |
| !! | GGCTGAGCCACCGGTTCAGA+CGG | - | chr2_2:54845997-54846016 | Msa0258500:CDS | 65.0% |
| ATCAACAGGGCCGGTCGCTG+GGG | + | chr2_2:54846472-54846491 | None:intergenic | 65.0% | |
| CATCAACAGGGCCGGTCGCT+GGG | + | chr2_2:54846473-54846492 | None:intergenic | 65.0% | |
| ACATCAACAGGGCCGGTCGC+TGG | + | chr2_2:54846474-54846493 | None:intergenic | 65.0% | |
| !! | GGCTGAGCCACCGGTTCAGA+CGG | - | chr2_2:54845997-54846016 | Msa0258500:CDS | 65.0% |
| ATCAACAGGGCCGGTCGCTG+GGG | + | chr2_2:54846472-54846491 | None:intergenic | 65.0% | |
| CATCAACAGGGCCGGTCGCT+GGG | + | chr2_2:54846473-54846492 | None:intergenic | 65.0% | |
| ACATCAACAGGGCCGGTCGC+TGG | + | chr2_2:54846474-54846493 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 54844868 | 54846919 | 54844868 | ID=Msa0258500;Name=Msa0258500 |
| chr2_2 | mRNA | 54844868 | 54846919 | 54844868 | ID=Msa0258500-mRNA-1;Parent=Msa0258500;Name=Msa0258500-mRNA-1;_AED=0.22;_eAED=0.22;_QI=119|0.16|0.14|0.57|0|0|7|0|289 |
| chr2_2 | exon | 54844868 | 54845011 | 54844868 | ID=Msa0258500-mRNA-1:exon:16528;Parent=Msa0258500-mRNA-1 |
| chr2_2 | exon | 54845032 | 54845127 | 54845032 | ID=Msa0258500-mRNA-1:exon:16527;Parent=Msa0258500-mRNA-1 |
| chr2_2 | exon | 54845252 | 54845260 | 54845252 | ID=Msa0258500-mRNA-1:exon:16526;Parent=Msa0258500-mRNA-1 |
| chr2_2 | exon | 54845742 | 54845975 | 54845742 | ID=Msa0258500-mRNA-1:exon:16525;Parent=Msa0258500-mRNA-1 |
| chr2_2 | exon | 54845988 | 54846230 | 54845988 | ID=Msa0258500-mRNA-1:exon:16524;Parent=Msa0258500-mRNA-1 |
| chr2_2 | exon | 54846473 | 54846577 | 54846473 | ID=Msa0258500-mRNA-1:exon:16523;Parent=Msa0258500-mRNA-1 |
| chr2_2 | exon | 54846762 | 54846919 | 54846762 | ID=Msa0258500-mRNA-1:exon:16522;Parent=Msa0258500-mRNA-1 |
| chr2_2 | five_prime_UTR | 54846801 | 54846919 | 54846801 | ID=Msa0258500-mRNA-1:five_prime_utr;Parent=Msa0258500-mRNA-1 |
| chr2_2 | CDS | 54846762 | 54846800 | 54846762 | ID=Msa0258500-mRNA-1:cds;Parent=Msa0258500-mRNA-1 |
| chr2_2 | CDS | 54846473 | 54846577 | 54846473 | ID=Msa0258500-mRNA-1:cds;Parent=Msa0258500-mRNA-1 |
| chr2_2 | CDS | 54845988 | 54846230 | 54845988 | ID=Msa0258500-mRNA-1:cds;Parent=Msa0258500-mRNA-1 |
| chr2_2 | CDS | 54845742 | 54845975 | 54845742 | ID=Msa0258500-mRNA-1:cds;Parent=Msa0258500-mRNA-1 |
| chr2_2 | CDS | 54845252 | 54845260 | 54845252 | ID=Msa0258500-mRNA-1:cds;Parent=Msa0258500-mRNA-1 |
| chr2_2 | CDS | 54845032 | 54845127 | 54845032 | ID=Msa0258500-mRNA-1:cds;Parent=Msa0258500-mRNA-1 |
| chr2_2 | CDS | 54844868 | 54845011 | 54844868 | ID=Msa0258500-mRNA-1:cds;Parent=Msa0258500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
