Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258650 | XP_024631624.1 | 96.785 | 311 | 7 | 2 | 1 | 310 | 1 | 309 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258650 | sp|Q9SGD1|ZWIP3_ARATH | 56.845 | 336 | 100 | 11 | 8 | 300 | 3 | 336 | 2.21e-116 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258650 | A0A396JBA6 | 96.785 | 311 | 7 | 2 | 1 | 310 | 1 | 309 | 0.0 | 623 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0258650 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0258650 | Msa0258720 | 0.906373 | 1.589723e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258650 | MtrunA17_Chr2g0321291 | 96.785 | 311 | 7 | 2 | 1 | 310 | 1 | 309 | 0.0 | 623 |
| Msa0258650 | MtrunA17_Chr4g0026521 | 66.124 | 307 | 82 | 6 | 6 | 308 | 5 | 293 | 4.44e-128 | 367 |
| Msa0258650 | MtrunA17_Chr7g0258011 | 62.195 | 246 | 80 | 4 | 73 | 306 | 103 | 347 | 5.71e-109 | 320 |
| Msa0258650 | MtrunA17_Chr1g0173841 | 60.643 | 249 | 75 | 5 | 78 | 306 | 141 | 386 | 7.14e-106 | 314 |
| Msa0258650 | MtrunA17_Chr8g0352011 | 64.444 | 225 | 63 | 3 | 82 | 296 | 110 | 327 | 1.04e-103 | 306 |
| Msa0258650 | MtrunA17_Chr2g0328921 | 63.636 | 220 | 68 | 3 | 69 | 282 | 73 | 286 | 1.70e-101 | 300 |
| Msa0258650 | MtrunA17_Chr5g0422571 | 63.679 | 212 | 62 | 4 | 74 | 284 | 55 | 252 | 1.47e-97 | 289 |
| Msa0258650 | MtrunA17_Chr4g0053341 | 57.724 | 246 | 87 | 2 | 46 | 290 | 1 | 230 | 5.23e-95 | 280 |
| Msa0258650 | MtrunA17_Chr1g0198651 | 77.707 | 157 | 32 | 1 | 131 | 284 | 99 | 255 | 5.52e-94 | 280 |
| Msa0258650 | MtrunA17_Chr1g0200421 | 39.873 | 158 | 81 | 7 | 141 | 289 | 245 | 397 | 8.81e-27 | 109 |
| Msa0258650 | MtrunA17_Chr2g0320341 | 35.220 | 159 | 95 | 4 | 134 | 285 | 231 | 388 | 1.19e-22 | 97.1 |
| Msa0258650 | MtrunA17_Chr8g0382121 | 38.571 | 140 | 81 | 4 | 149 | 284 | 127 | 265 | 4.55e-21 | 91.3 |
| Msa0258650 | MtrunA17_Chr4g0029521 | 38.129 | 139 | 77 | 4 | 141 | 278 | 61 | 191 | 4.09e-20 | 90.5 |
| Msa0258650 | MtrunA17_Chr2g0326381 | 35.616 | 146 | 85 | 4 | 134 | 278 | 48 | 185 | 1.31e-19 | 88.6 |
| Msa0258650 | MtrunA17_Chr1g0151351 | 36.170 | 141 | 81 | 4 | 139 | 278 | 62 | 194 | 5.27e-19 | 87.0 |
| Msa0258650 | MtrunA17_Chr1g0181381 | 34.247 | 146 | 87 | 4 | 134 | 278 | 54 | 191 | 5.69e-19 | 87.0 |
| Msa0258650 | MtrunA17_Chr7g0263941 | 32.973 | 185 | 104 | 7 | 134 | 310 | 50 | 222 | 5.85e-19 | 86.7 |
| Msa0258650 | MtrunA17_Chr3g0123941 | 37.037 | 162 | 91 | 7 | 149 | 306 | 139 | 293 | 9.34e-19 | 85.1 |
| Msa0258650 | MtrunA17_Chr1g0185121 | 35.374 | 147 | 84 | 5 | 134 | 278 | 56 | 193 | 1.22e-18 | 85.9 |
| Msa0258650 | MtrunA17_Chr2g0324991 | 35.211 | 142 | 82 | 5 | 134 | 273 | 8 | 141 | 3.20e-18 | 80.1 |
| Msa0258650 | MtrunA17_Chr1g0162971 | 36.429 | 140 | 77 | 5 | 141 | 278 | 64 | 193 | 3.22e-18 | 84.7 |
| Msa0258650 | MtrunA17_Chr1g0191991 | 36.054 | 147 | 82 | 6 | 134 | 278 | 79 | 215 | 3.52e-18 | 84.7 |
| Msa0258650 | MtrunA17_Chr1g0210821 | 34.694 | 147 | 84 | 5 | 134 | 278 | 60 | 196 | 3.59e-18 | 84.7 |
| Msa0258650 | MtrunA17_Chr7g0268961 | 35.252 | 139 | 80 | 4 | 141 | 278 | 45 | 174 | 3.70e-18 | 84.7 |
| Msa0258650 | MtrunA17_Chr1g0163001 | 34.694 | 147 | 84 | 5 | 134 | 278 | 59 | 195 | 5.07e-18 | 84.3 |
| Msa0258650 | MtrunA17_Chr1g0199101 | 34.694 | 147 | 84 | 5 | 134 | 278 | 63 | 199 | 5.09e-18 | 84.3 |
| Msa0258650 | MtrunA17_Chr8g0342421 | 35.714 | 140 | 78 | 6 | 141 | 278 | 85 | 214 | 6.55e-18 | 84.0 |
| Msa0258650 | MtrunA17_Chr8g0373541 | 33.742 | 163 | 94 | 6 | 118 | 278 | 35 | 185 | 1.08e-17 | 83.2 |
| Msa0258650 | MtrunA17_Chr2g0330171 | 34.694 | 147 | 84 | 6 | 134 | 278 | 62 | 198 | 1.75e-17 | 82.4 |
| Msa0258650 | MtrunA17_Chr4g0040571 | 32.877 | 146 | 88 | 4 | 134 | 278 | 55 | 191 | 1.45e-16 | 80.1 |
| Msa0258650 | MtrunA17_Chr3g0141431 | 33.571 | 140 | 83 | 4 | 139 | 276 | 43 | 174 | 2.42e-16 | 79.0 |
| Msa0258650 | MtrunA17_Chr6g0479921 | 30.496 | 141 | 82 | 5 | 139 | 274 | 50 | 179 | 6.25e-12 | 65.9 |
| Msa0258650 | MtrunA17_Chr8g0375521 | 30.216 | 139 | 86 | 5 | 139 | 274 | 48 | 178 | 6.96e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258650 | AT1G08290.1 | 56.845 | 336 | 100 | 11 | 8 | 300 | 3 | 336 | 2.25e-117 | 342 |
| Msa0258650 | AT1G51220.1 | 51.757 | 313 | 107 | 6 | 19 | 306 | 43 | 336 | 1.47e-103 | 306 |
| Msa0258650 | AT3G20880.1 | 63.158 | 228 | 67 | 2 | 84 | 294 | 176 | 403 | 3.94e-101 | 303 |
| Msa0258650 | AT3G57670.1 | 59.184 | 245 | 67 | 4 | 84 | 296 | 122 | 365 | 1.38e-100 | 300 |
| Msa0258650 | AT1G13290.1 | 65.347 | 202 | 52 | 4 | 84 | 283 | 54 | 239 | 2.75e-93 | 279 |
| Msa0258650 | AT1G34790.1 | 60.090 | 223 | 80 | 3 | 84 | 303 | 83 | 299 | 6.50e-93 | 278 |
| Msa0258650 | AT1G34370.3 | 38.608 | 158 | 85 | 5 | 141 | 289 | 28 | 182 | 7.84e-28 | 109 |
| Msa0258650 | AT1G34370.2 | 38.608 | 158 | 85 | 5 | 141 | 289 | 238 | 392 | 2.82e-27 | 111 |
| Msa0258650 | AT1G34370.1 | 38.608 | 158 | 85 | 5 | 141 | 289 | 238 | 392 | 2.82e-27 | 111 |
| Msa0258650 | AT5G22890.1 | 39.735 | 151 | 83 | 5 | 141 | 284 | 211 | 360 | 1.79e-24 | 102 |
| Msa0258650 | AT5G03150.1 | 36.691 | 139 | 79 | 4 | 141 | 278 | 76 | 206 | 4.48e-20 | 90.9 |
| Msa0258650 | AT1G55110.3 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 1.17e-18 | 86.3 |
| Msa0258650 | AT1G55110.1 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 1.17e-18 | 86.3 |
| Msa0258650 | AT1G55110.2 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 1.17e-18 | 86.3 |
| Msa0258650 | AT5G66730.1 | 35.915 | 142 | 79 | 5 | 139 | 278 | 53 | 184 | 1.78e-18 | 85.9 |
| Msa0258650 | AT5G60470.1 | 37.410 | 139 | 78 | 4 | 141 | 278 | 58 | 188 | 2.05e-18 | 85.5 |
| Msa0258650 | AT5G60470.3 | 37.410 | 139 | 78 | 4 | 141 | 278 | 63 | 193 | 2.14e-18 | 85.5 |
| Msa0258650 | AT5G60470.2 | 37.410 | 139 | 78 | 4 | 141 | 278 | 67 | 197 | 2.18e-18 | 85.5 |
| Msa0258650 | AT2G02080.1 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.30e-18 | 85.9 |
| Msa0258650 | AT2G02080.4 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.30e-18 | 85.9 |
| Msa0258650 | AT2G02080.5 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.30e-18 | 85.9 |
| Msa0258650 | AT2G02080.3 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.30e-18 | 85.9 |
| Msa0258650 | AT4G02670.1 | 35.616 | 146 | 85 | 4 | 134 | 278 | 69 | 206 | 2.58e-18 | 85.1 |
| Msa0258650 | AT4G02670.2 | 35.616 | 146 | 85 | 4 | 134 | 278 | 71 | 208 | 2.74e-18 | 85.1 |
| Msa0258650 | AT3G45260.2 | 36.691 | 139 | 79 | 4 | 141 | 278 | 62 | 192 | 3.69e-18 | 84.7 |
| Msa0258650 | AT3G45260.1 | 36.691 | 139 | 79 | 4 | 141 | 278 | 62 | 192 | 3.69e-18 | 84.7 |
| Msa0258650 | AT2G02070.2 | 34.932 | 146 | 85 | 4 | 134 | 278 | 68 | 204 | 4.63e-18 | 85.1 |
| Msa0258650 | AT2G02070.1 | 34.932 | 146 | 85 | 4 | 134 | 278 | 68 | 204 | 4.63e-18 | 85.1 |
| Msa0258650 | AT2G02080.6 | 36.567 | 134 | 75 | 4 | 146 | 278 | 5 | 129 | 6.27e-18 | 84.3 |
| Msa0258650 | AT2G02080.2 | 36.567 | 134 | 75 | 4 | 146 | 278 | 5 | 129 | 6.27e-18 | 84.3 |
| Msa0258650 | AT1G14580.1 | 34.247 | 146 | 86 | 4 | 134 | 278 | 69 | 205 | 7.74e-18 | 84.0 |
| Msa0258650 | AT1G14580.2 | 34.247 | 146 | 86 | 4 | 134 | 278 | 69 | 205 | 7.74e-18 | 84.0 |
| Msa0258650 | AT1G14580.3 | 34.247 | 146 | 86 | 4 | 134 | 278 | 83 | 219 | 7.97e-18 | 84.0 |
| Msa0258650 | AT5G44160.1 | 33.813 | 139 | 82 | 4 | 141 | 278 | 60 | 189 | 2.01e-17 | 82.8 |
| Msa0258650 | AT1G03840.2 | 34.932 | 146 | 85 | 5 | 134 | 278 | 55 | 191 | 2.12e-17 | 82.8 |
| Msa0258650 | AT1G03840.1 | 34.932 | 146 | 85 | 5 | 134 | 278 | 57 | 193 | 2.13e-17 | 82.8 |
| Msa0258650 | AT5G44160.2 | 32.877 | 146 | 88 | 4 | 134 | 278 | 14 | 150 | 2.28e-17 | 82.4 |
| Msa0258650 | AT3G13810.5 | 34.247 | 146 | 87 | 4 | 134 | 278 | 81 | 218 | 3.47e-17 | 82.4 |
| Msa0258650 | AT3G13810.4 | 34.247 | 146 | 87 | 4 | 134 | 278 | 86 | 223 | 3.73e-17 | 82.0 |
| Msa0258650 | AT3G13810.1 | 34.247 | 146 | 87 | 4 | 134 | 278 | 86 | 223 | 3.73e-17 | 82.0 |
| Msa0258650 | AT3G50700.1 | 34.247 | 146 | 86 | 4 | 134 | 278 | 50 | 186 | 3.96e-17 | 82.0 |
| Msa0258650 | AT3G13810.2 | 34.247 | 146 | 87 | 4 | 134 | 278 | 87 | 224 | 4.07e-17 | 82.0 |
| Msa0258650 | AT3G13810.3 | 34.247 | 146 | 87 | 4 | 134 | 278 | 73 | 210 | 4.11e-17 | 82.0 |
| Msa0258650 | AT3G13810.6 | 34.247 | 146 | 87 | 4 | 134 | 278 | 67 | 204 | 4.22e-17 | 82.0 |
| Msa0258650 | AT1G68130.1 | 31.655 | 139 | 84 | 5 | 139 | 274 | 62 | 192 | 1.63e-12 | 68.2 |
| Msa0258650 | AT1G25250.1 | 29.710 | 138 | 89 | 4 | 139 | 274 | 31 | 162 | 2.39e-12 | 67.4 |
| Msa0258650 | AT1G25250.3 | 30.216 | 139 | 87 | 5 | 139 | 274 | 54 | 185 | 3.19e-12 | 67.0 |
| Msa0258650 | AT2G01940.1 | 30.216 | 139 | 86 | 5 | 139 | 274 | 65 | 195 | 5.67e-11 | 63.5 |
Find 60 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAGCATTTGCTGTTAA+AGG | 0.122625 | 2_2:+55130651 | Msa0258650:CDS |
| TTGAGCCATTCAATGAAATT+TGG | 0.134972 | 2_2:-55127675 | None:intergenic |
| TCCCCACTTCCTTCTCTTGA+TGG | 0.185051 | 2_2:+55130789 | Msa0258650:CDS |
| TGAATATATTTCACAAATCT+AGG | 0.278468 | 2_2:+55127573 | Msa0258650:five_prime_UTR |
| AGTTTGTGTTGATGAGTTAA+AGG | 0.287140 | 2_2:-55127735 | None:intergenic |
| TGAGCCATTCAATGAAATTT+GGG | 0.289191 | 2_2:-55127674 | None:intergenic |
| GATGATGAGAGTGAGGAATT+AGG | 0.300962 | 2_2:-55127702 | None:intergenic |
| AAAGGACCAGACTCACTTAA+AGG | 0.304674 | 2_2:+55130465 | Msa0258650:CDS |
| GAGAAAGAATGCAGCAATAC+TGG | 0.341279 | 2_2:+55130822 | Msa0258650:CDS |
| AAACCCCAAATTTCATTGAA+TGG | 0.361241 | 2_2:+55127670 | Msa0258650:CDS |
| CATATTGTTGTATCTATTGA+AGG | 0.375727 | 2_2:-55128084 | None:intergenic |
| TGAACATGATGAGAAGAATA+AGG | 0.376871 | 2_2:+55127920 | Msa0258650:CDS |
| CATTTGCTGTTAAAGGTGAT+TGG | 0.376909 | 2_2:+55130658 | Msa0258650:CDS |
| GCTCATGCATGATCATGATA+TGG | 0.396038 | 2_2:+55130864 | Msa0258650:exon |
| ATTGAAGGTCTTACTGCATA+TGG | 0.402051 | 2_2:-55128069 | None:intergenic |
| TTAAGGAGGAGAGAAGGTTT+TGG | 0.404432 | 2_2:+55127997 | Msa0258650:CDS |
| TGTGTTCCTTTAAGTGAGTC+TGG | 0.407901 | 2_2:-55130471 | None:intergenic |
| AAAGATCATGTTAGATCCTT+CGG | 0.408333 | 2_2:+55130756 | Msa0258650:CDS |
| ACTCCTGCTCAGATTCTTGT+TGG | 0.408478 | 2_2:+55128026 | Msa0258650:CDS |
| CAATGAAATTTGGGGTTTGA+AGG | 0.444233 | 2_2:-55127665 | None:intergenic |
| ATCTCTCTCTAGAATTAAGA+TGG | 0.445216 | 2_2:+55127602 | Msa0258650:exon |
| TCCAAGAGCAAAACCATTGA+AGG | 0.445743 | 2_2:+55130560 | Msa0258650:CDS |
| TAGTGGAGTTAAGCCCTTTG+AGG | 0.446748 | 2_2:+55127791 | Msa0258650:CDS |
| CTAGAATTAAGATGGGTTTG+AGG | 0.448542 | 2_2:+55127610 | Msa0258650:exon |
| CATCCCATGGTCGTCCTCAA+AGG | 0.449561 | 2_2:-55127805 | None:intergenic |
| TAGAATTAAGATGGGTTTGA+GGG | 0.453608 | 2_2:+55127611 | Msa0258650:exon |
| CCATGTTATTGTTGTGCTCA+CGG | 0.477382 | 2_2:+55130516 | Msa0258650:CDS |
| CATGTTAGATCCTTCGGAAA+AGG | 0.486223 | 2_2:+55130762 | Msa0258650:CDS |
| GTGTTTAAAATCTGAACCAC+AGG | 0.489686 | 2_2:-55130721 | None:intergenic |
| AGAGTTCTGAAATCCTTCAA+TGG | 0.491722 | 2_2:-55130573 | None:intergenic |
| GGCTTAACTCCACTAGAGAT+TGG | 0.493614 | 2_2:-55127783 | None:intergenic |
| GGCAGCCTTAGCATTGCTGC+TGG | 0.503446 | 2_2:-55130495 | None:intergenic |
| TGAAGTAAAAGAAGAGAAGG+TGG | 0.512589 | 2_2:+55127842 | Msa0258650:CDS |
| GAATATATTTCACAAATCTA+GGG | 0.517022 | 2_2:+55127574 | Msa0258650:five_prime_UTR |
| ATCCCATGGTCGTCCTCAAA+GGG | 0.519930 | 2_2:-55127804 | None:intergenic |
| GATTTGTGCTGTTGAAATTG+TGG | 0.524507 | 2_2:+55130944 | Msa0258650:three_prime_UTR |
| TGATGAGTTAAAGGCGATGA+AGG | 0.525454 | 2_2:-55127726 | None:intergenic |
| TGAAGGAGATGATGAGAGTG+AGG | 0.539316 | 2_2:-55127709 | None:intergenic |
| CACAACCAGCAGCAATGCTA+AGG | 0.552239 | 2_2:+55130490 | Msa0258650:CDS |
| GATGAGAGTGAGGAATTAGG+TGG | 0.553504 | 2_2:-55127699 | None:intergenic |
| ACTCATTACAAAAGAAAGCA+TGG | 0.557148 | 2_2:+55130600 | Msa0258650:CDS |
| GGACGACCATGGGATGCAAA+AGG | 0.560614 | 2_2:+55127812 | Msa0258650:CDS |
| TCAGATTCACATCCTACGTT+AGG | 0.564487 | 2_2:-55127897 | None:intergenic |
| AGCCATCAAGAGAAGGAAGT+GGG | 0.568332 | 2_2:-55130791 | None:intergenic |
| GTGACTGTGGCTTTGCACAT+TGG | 0.568567 | 2_2:+55127870 | Msa0258650:CDS |
| ACAAGAATCTGAGCAGGAGT+TGG | 0.574558 | 2_2:-55128023 | None:intergenic |
| GGTCCAACAAGAATCTGAGC+AGG | 0.582655 | 2_2:-55128029 | None:intergenic |
| AAGCCCTTTGAGGACGACCA+TGG | 0.585506 | 2_2:+55127801 | Msa0258650:CDS |
| TCTTCAAAGCCATCAAGAGA+AGG | 0.586437 | 2_2:-55130798 | None:intergenic |
| AGCCCTTTGAGGACGACCAT+GGG | 0.589212 | 2_2:+55127802 | Msa0258650:CDS |
| AAGCCATCAAGAGAAGGAAG+TGG | 0.595192 | 2_2:-55130792 | None:intergenic |
| CAATAGATACAACAATATGC+AGG | 0.595484 | 2_2:+55128088 | Msa0258650:CDS |
| TCTCTCTCTAGAATTAAGAT+GGG | 0.611781 | 2_2:+55127603 | Msa0258650:exon |
| ATGGAGCAAGCAAACTGCAT+AGG | 0.613273 | 2_2:-55128050 | None:intergenic |
| GAGCCATTCAATGAAATTTG+GGG | 0.617863 | 2_2:-55127673 | None:intergenic |
| CCGTGAGCACAACAATAACA+TGG | 0.626600 | 2_2:-55130516 | None:intergenic |
| CATGGATCAGAATTTAGGAA+AGG | 0.639859 | 2_2:+55130447 | Msa0258650:CDS |
| CACATTGGATTGCCTAACGT+AGG | 0.667692 | 2_2:+55127885 | Msa0258650:CDS |
| GCCATCAAGAGAAGGAAGTG+GGG | 0.668776 | 2_2:-55130790 | None:intergenic |
| GAAGGTGGAACATGTGACTG+TGG | 0.730758 | 2_2:+55127857 | Msa0258650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTAAATTTTATACAC+GGG | - | chr2_2:55128932-55128951 | None:intergenic | 10.0% |
| !! | TTAGTCATATTAAATTATAT+TGG | - | chr2_2:55129112-55129131 | None:intergenic | 10.0% |
| !! | AATATAATTTAATATGACTA+AGG | + | chr2_2:55129111-55129130 | Msa0258650:intron | 10.0% |
| !! | AATAGTTCAATTAATTACAT+TGG | + | chr2_2:55128641-55128660 | Msa0258650:intron | 15.0% |
| !!! | ATAAATTTGAAATAAAGTGA+CGG | - | chr2_2:55128811-55128830 | None:intergenic | 15.0% |
| !! | ACTTACAAAATAAATATATG+TGG | - | chr2_2:55130247-55130266 | None:intergenic | 15.0% |
| !!! | TTCTAATTTCATAGTTTTTT+AGG | - | chr2_2:55130353-55130372 | None:intergenic | 15.0% |
| !! | TGAATATATTTCACAAATCT+AGG | + | chr2_2:55127573-55127592 | Msa0258650:five_prime_UTR | 20.0% |
| !! | GAATATATTTCACAAATCTA+GGG | + | chr2_2:55127574-55127593 | Msa0258650:five_prime_UTR | 20.0% |
| !!! | TCTTATCAAGAATTTTTCAA+GGG | + | chr2_2:55128284-55128303 | Msa0258650:intron | 20.0% |
| !! | AATTTGTATTTAGTAGTCTT+AGG | + | chr2_2:55128309-55128328 | Msa0258650:intron | 20.0% |
| !! | ACTATTGAAGTGATAAAATA+TGG | - | chr2_2:55128627-55128646 | None:intergenic | 20.0% |
| !! | TAAGTATAATTATGTGACTT+TGG | - | chr2_2:55128999-55129018 | None:intergenic | 20.0% |
| !!! | TCACATTTTTTAAAGTGTAA+AGG | - | chr2_2:55129244-55129263 | None:intergenic | 20.0% |
| !!! | TAATTTGTTCTTATGTTTCA+AGG | + | chr2_2:55129600-55129619 | Msa0258650:intron | 20.0% |
| !!! | TAGATCAAACACTTTTTTAT+AGG | + | chr2_2:55129725-55129744 | Msa0258650:intron | 20.0% |
| !!! | TTTGGTTTTTCTTATGTAAT+TGG | - | chr2_2:55129791-55129810 | None:intergenic | 20.0% |
| !! | ATAAAGAGTAAAATCCTTTA+GGG | - | chr2_2:55130162-55130181 | None:intergenic | 20.0% |
| !! | AATAAAGAGTAAAATCCTTT+AGG | - | chr2_2:55130163-55130182 | None:intergenic | 20.0% |
| !!! | TAAGTTATCTCTATTTTATG+CGG | + | chr2_2:55130262-55130281 | Msa0258650:intron | 20.0% |
| !! | ACTATGAAATTAGAATTGAA+TGG | + | chr2_2:55130358-55130377 | Msa0258650:intron | 20.0% |
| ! | TAAAAACTGGAAAGTTTCTT+GGG | - | chr2_2:55127763-55127782 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTAAAAGAAGAGA+AGG | + | chr2_2:55127839-55127858 | Msa0258650:CDS | 25.0% |
| !!! | TAAGGTTTTTGATTGTGTTA+AGG | + | chr2_2:55127938-55127957 | Msa0258650:CDS | 25.0% |
| ! | CATATTGTTGTATCTATTGA+AGG | - | chr2_2:55128087-55128106 | None:intergenic | 25.0% |
| !! | ATTTTTCCCTAAAAATCGAA+GGG | - | chr2_2:55128225-55128244 | None:intergenic | 25.0% |
| !! | TATTTTTCCCTAAAAATCGA+AGG | - | chr2_2:55128226-55128245 | None:intergenic | 25.0% |
| !! | GTCTTATCAAGAATTTTTCA+AGG | + | chr2_2:55128283-55128302 | Msa0258650:intron | 25.0% |
| ! | CAAAAGAAAAGAAAACCTAA+GGG | - | chr2_2:55128345-55128364 | None:intergenic | 25.0% |
| ! | TCAAAAGAAAAGAAAACCTA+AGG | - | chr2_2:55128346-55128365 | None:intergenic | 25.0% |
| ! | TGAAAGCAAATTTCTCTTAT+AGG | + | chr2_2:55128363-55128382 | Msa0258650:intron | 25.0% |
| ! | GAAAGCAAATTTCTCTTATA+GGG | + | chr2_2:55128364-55128383 | Msa0258650:intron | 25.0% |
| ! | TTCAAATTAGATAAGAGAGA+CGG | + | chr2_2:55128503-55128522 | Msa0258650:intron | 25.0% |
| ! | TAAGAAGTTATGTGTATGAA+TGG | - | chr2_2:55128603-55128622 | None:intergenic | 25.0% |
| ! | AAATAGCATAGTCTATAGTT+GGG | - | chr2_2:55128710-55128729 | None:intergenic | 25.0% |
| ! | TAAATAGCATAGTCTATAGT+TGG | - | chr2_2:55128711-55128730 | None:intergenic | 25.0% |
| !!! | TTTTTTTGACAAAACAGCAT+AGG | - | chr2_2:55128873-55128892 | None:intergenic | 25.0% |
| ! | AGGTGTTTAACATTATGATT+AGG | + | chr2_2:55129131-55129150 | Msa0258650:intron | 25.0% |
| !! | AATGATTGTTTTCTTCTTGA+TGG | - | chr2_2:55129170-55129189 | None:intergenic | 25.0% |
| ! | GAAAGCAAAAATAAATGAGA+GGG | - | chr2_2:55129222-55129241 | None:intergenic | 25.0% |
| ! | AAAAATGTGAGCAAAATGAA+TGG | + | chr2_2:55129254-55129273 | Msa0258650:intron | 25.0% |
| !! | AAGATATGGTCTTTTACTAT+AGG | - | chr2_2:55129341-55129360 | None:intergenic | 25.0% |
| ! | TATTGCATACTCTTTGATAT+GGG | - | chr2_2:55129384-55129403 | None:intergenic | 25.0% |
| ! | ATATTGCATACTCTTTGATA+TGG | - | chr2_2:55129385-55129404 | None:intergenic | 25.0% |
| !! | ATTCTTCATAGATTCTAAGA+AGG | - | chr2_2:55129429-55129448 | None:intergenic | 25.0% |
| ! | AGTGTTTGATCTAATTCATA+AGG | - | chr2_2:55129718-55129737 | None:intergenic | 25.0% |
| !!! | ATTGATGATGATGATGATAA+TGG | + | chr2_2:55129829-55129848 | Msa0258650:intron | 25.0% |
| !! | AACACATCCTTAATTTTGTA+AGG | - | chr2_2:55129929-55129948 | None:intergenic | 25.0% |
| ! | TACAAAATTAAGGATGTGTT+TGG | + | chr2_2:55129929-55129948 | Msa0258650:intron | 25.0% |
| ! | ACAAAATAAATATATGTGGC+CGG | - | chr2_2:55130243-55130262 | None:intergenic | 25.0% |
| !! | AAGTTATCTCTATTTTATGC+GGG | + | chr2_2:55130263-55130282 | Msa0258650:intron | 25.0% |
| !! | AATATATGGCTAGTGTTATT+TGG | - | chr2_2:55130301-55130320 | None:intergenic | 25.0% |
| !! | AGAAAAATTGTGGAAAGTTT+TGG | + | chr2_2:55130691-55130710 | Msa0258650:CDS | 25.0% |
| !! | ATCTCTCTCTAGAATTAAGA+TGG | + | chr2_2:55127602-55127621 | Msa0258650:exon | 30.0% |
| !! | TCTCTCTCTAGAATTAAGAT+GGG | + | chr2_2:55127603-55127622 | Msa0258650:exon | 30.0% |
| ! | TAGAATTAAGATGGGTTTGA+GGG | + | chr2_2:55127611-55127630 | Msa0258650:exon | 30.0% |
| AAACCCCAAATTTCATTGAA+TGG | + | chr2_2:55127670-55127689 | Msa0258650:CDS | 30.0% | |
| TGAGCCATTCAATGAAATTT+GGG | - | chr2_2:55127677-55127696 | None:intergenic | 30.0% | |
| TTGAGCCATTCAATGAAATT+TGG | - | chr2_2:55127678-55127697 | None:intergenic | 30.0% | |
| ! | AGTTTGTGTTGATGAGTTAA+AGG | - | chr2_2:55127738-55127757 | None:intergenic | 30.0% |
| GTAAAAACTGGAAAGTTTCT+TGG | - | chr2_2:55127764-55127783 | None:intergenic | 30.0% | |
| TGAACATGATGAGAAGAATA+AGG | + | chr2_2:55127920-55127939 | Msa0258650:CDS | 30.0% | |
| CAATAGATACAACAATATGC+AGG | + | chr2_2:55128088-55128107 | Msa0258650:CDS | 30.0% | |
| ! | TTCTTAACCCTTCGATTTTT+AGG | + | chr2_2:55128153-55128172 | Msa0258650:intron | 30.0% |
| ! | TCTTAACCCTTCGATTTTTA+GGG | + | chr2_2:55128154-55128173 | Msa0258650:intron | 30.0% |
| AATTTCCCCTAAAAATCGAA+GGG | - | chr2_2:55128163-55128182 | None:intergenic | 30.0% | |
| AAATTTCCCCTAAAAATCGA+AGG | - | chr2_2:55128164-55128183 | None:intergenic | 30.0% | |
| TAAAAATCGAAGGGTTAAGA+AGG | - | chr2_2:55128154-55128173 | None:intergenic | 30.0% | |
| ! | TTCTTAACCCTTCGATTTTT+AGG | + | chr2_2:55128153-55128172 | Msa0258650:intron | 30.0% |
| ! | TCTTAACCCTTCGATTTTTA+GGG | + | chr2_2:55128154-55128173 | Msa0258650:intron | 30.0% |
| TTAGGTCAATAATTTCCCTT+AGG | + | chr2_2:55128327-55128346 | Msa0258650:intron | 30.0% | |
| ATAGTAACGAAGGATATAGA+GGG | - | chr2_2:55128958-55128977 | None:intergenic | 30.0% | |
| ATTTGTCATCATAGTAACGA+AGG | - | chr2_2:55128968-55128987 | None:intergenic | 30.0% | |
| GGAAAGCAAAAATAAATGAG+AGG | - | chr2_2:55129223-55129242 | None:intergenic | 30.0% | |
| ! | GTATCCCAACTTTTAGTAAA+AGG | + | chr2_2:55129300-55129319 | Msa0258650:intron | 30.0% |
| ! | AGAGCCTTTTACTAAAAGTT+GGG | - | chr2_2:55129307-55129326 | None:intergenic | 30.0% |
| ! | AAGAGCCTTTTACTAAAAGT+TGG | - | chr2_2:55129308-55129327 | None:intergenic | 30.0% |
| ! | AATACAAAGGCATGAAGATA+TGG | - | chr2_2:55129355-55129374 | None:intergenic | 30.0% |
| ATATGGGAAAGGAAATACAA+AGG | - | chr2_2:55129368-55129387 | None:intergenic | 30.0% | |
| AATTCTAGCACTCCTTATTA+TGG | + | chr2_2:55129489-55129508 | Msa0258650:intron | 30.0% | |
| ATTCTAGCACTCCTTATTAT+GGG | + | chr2_2:55129490-55129509 | Msa0258650:intron | 30.0% | |
| TAAGTTGCTTGATGTATACT+AGG | + | chr2_2:55129567-55129586 | Msa0258650:intron | 30.0% | |
| AAGTTGCTTGATGTATACTA+GGG | + | chr2_2:55129568-55129587 | Msa0258650:intron | 30.0% | |
| CTTCTTTCTTGTCGATAAAA+AGG | + | chr2_2:55129625-55129644 | Msa0258650:intron | 30.0% | |
| TATCATCATCATCATCAATG+TGG | - | chr2_2:55129828-55129847 | None:intergenic | 30.0% | |
| TCGTCATCCTTACAAAATTA+AGG | + | chr2_2:55129919-55129938 | Msa0258650:intron | 30.0% | |
| ! | TATTTTATCTCTATTCCACG+TGG | + | chr2_2:55130194-55130213 | Msa0258650:intron | 30.0% |
| ! | ATTTTATCTCTATTCCACGT+GGG | + | chr2_2:55130195-55130214 | Msa0258650:intron | 30.0% |
| GTTGCGATCAAGAAAATATA+TGG | - | chr2_2:55130315-55130334 | None:intergenic | 30.0% | |
| ! | GCTTTCTTTTGTAATGAGTT+TGG | - | chr2_2:55130599-55130618 | None:intergenic | 30.0% |
| ACTCATTACAAAAGAAAGCA+TGG | + | chr2_2:55130600-55130619 | Msa0258650:CDS | 30.0% | |
| ! | GAACATTTTCTGCAGATAAA+TGG | - | chr2_2:55130633-55130652 | None:intergenic | 30.0% |
| !! | TCTAAAGCATTTGCTGTTAA+AGG | + | chr2_2:55130651-55130670 | Msa0258650:CDS | 30.0% |
| AGAACTCATGAGAAAAATTG+TGG | + | chr2_2:55130681-55130700 | Msa0258650:CDS | 30.0% | |
| AAAGATCATGTTAGATCCTT+CGG | + | chr2_2:55130756-55130775 | Msa0258650:CDS | 30.0% | |
| ! | CTAGAATTAAGATGGGTTTG+AGG | + | chr2_2:55127610-55127629 | Msa0258650:exon | 35.0% |
| ! | CAATGAAATTTGGGGTTTGA+AGG | - | chr2_2:55127668-55127687 | None:intergenic | 35.0% |
| GAGCCATTCAATGAAATTTG+GGG | - | chr2_2:55127676-55127695 | None:intergenic | 35.0% | |
| CACTAGAGATTGGTAAAAAC+TGG | - | chr2_2:55127776-55127795 | None:intergenic | 35.0% | |
| ! | CAGTTTTTACCAATCTCTAG+TGG | + | chr2_2:55127774-55127793 | Msa0258650:CDS | 35.0% |
| TGAAGTAAAAGAAGAGAAGG+TGG | + | chr2_2:55127842-55127861 | Msa0258650:CDS | 35.0% | |
| GAATTGAAGAAAAACGTGCA+TGG | + | chr2_2:55127966-55127985 | Msa0258650:CDS | 35.0% | |
| !!! | CGTGCATGGTTTTTGTTTTA+AGG | + | chr2_2:55127980-55127999 | Msa0258650:CDS | 35.0% |
| !!! | GCATGGTTTTTGTTTTAAGG+AGG | + | chr2_2:55127983-55128002 | Msa0258650:CDS | 35.0% |
| !!! | TTTGTTTTAAGGAGGAGAGA+AGG | + | chr2_2:55127991-55128010 | Msa0258650:CDS | 35.0% |
| ATTGAAGGTCTTACTGCATA+TGG | - | chr2_2:55128072-55128091 | None:intergenic | 35.0% | |
| AGATACAACAATATGCAGGT+TGG | + | chr2_2:55128092-55128111 | Msa0258650:intron | 35.0% | |
| !! | ACAATATGCAGGTTGGTAAT+TGG | + | chr2_2:55128099-55128118 | Msa0258650:intron | 35.0% |
| !! | CTTAACCCTTCGATTTTTAG+GGG | + | chr2_2:55128155-55128174 | Msa0258650:intron | 35.0% |
| TTGCGTATGAAGTATGAACT+AGG | - | chr2_2:55128569-55128588 | None:intergenic | 35.0% | |
| ! | TTTTGACAAAACAGCATAGG+AGG | - | chr2_2:55128870-55128889 | None:intergenic | 35.0% |
| TCATGTTAAACTAGCATAGG+GGG | - | chr2_2:55128909-55128928 | None:intergenic | 35.0% | |
| GTCATGTTAAACTAGCATAG+GGG | - | chr2_2:55128910-55128929 | None:intergenic | 35.0% | |
| GGTCATGTTAAACTAGCATA+GGG | - | chr2_2:55128911-55128930 | None:intergenic | 35.0% | |
| CATAGTAACGAAGGATATAG+AGG | - | chr2_2:55128959-55128978 | None:intergenic | 35.0% | |
| CATACTCTTTGATATGGGAA+AGG | - | chr2_2:55129379-55129398 | None:intergenic | 35.0% | |
| CAAATACAACGCCCATAATA+AGG | - | chr2_2:55129504-55129523 | None:intergenic | 35.0% | |
| !! | GATGATGATGATAATGGTGA+TGG | + | chr2_2:55129835-55129854 | Msa0258650:intron | 35.0% |
| TTAAGGATGTGTTTGGATGA+AGG | + | chr2_2:55129936-55129955 | Msa0258650:intron | 35.0% | |
| TAAGGATGTGTTTGGATGAA+GGG | + | chr2_2:55129937-55129956 | Msa0258650:intron | 35.0% | |
| !! | AAAATCCTTTAGGGTGTGTT+TGG | - | chr2_2:55130153-55130172 | None:intergenic | 35.0% |
| ! | TCATTTTGCAGATGCATATG+TGG | + | chr2_2:55130421-55130440 | Msa0258650:intron | 35.0% |
| ! | CATTTTGCAGATGCATATGT+GGG | + | chr2_2:55130422-55130441 | Msa0258650:intron | 35.0% |
| ! | ATTTTGCAGATGCATATGTG+GGG | + | chr2_2:55130423-55130442 | Msa0258650:intron | 35.0% |
| CATGGATCAGAATTTAGGAA+AGG | + | chr2_2:55130447-55130466 | Msa0258650:CDS | 35.0% | |
| !! | AGAGTTCTGAAATCCTTCAA+TGG | - | chr2_2:55130576-55130595 | None:intergenic | 35.0% |
| !! | CATTTGCTGTTAAAGGTGAT+TGG | + | chr2_2:55130658-55130677 | Msa0258650:CDS | 35.0% |
| ! | GTGTTTAAAATCTGAACCAC+AGG | - | chr2_2:55130724-55130743 | None:intergenic | 35.0% |
| ! | GATTTGTGCTGTTGAAATTG+TGG | + | chr2_2:55130944-55130963 | Msa0258650:three_prime_UTR | 35.0% |
| GATGATGAGAGTGAGGAATT+AGG | - | chr2_2:55127705-55127724 | None:intergenic | 40.0% | |
| TGATGAGTTAAAGGCGATGA+AGG | - | chr2_2:55127729-55127748 | None:intergenic | 40.0% | |
| ! | AATCTTCCTTTTGCATCCCA+TGG | - | chr2_2:55127821-55127840 | None:intergenic | 40.0% |
| TCAGATTCACATCCTACGTT+AGG | - | chr2_2:55127900-55127919 | None:intergenic | 40.0% | |
| ! | TTAAGGAGGAGAGAAGGTTT+TGG | + | chr2_2:55127997-55128016 | Msa0258650:CDS | 40.0% |
| CTTAATTGTGCGTCTTGTGT+CGG | + | chr2_2:55128833-55128852 | Msa0258650:intron | 40.0% | |
| GGGTCATGTTAAACTAGCAT+AGG | - | chr2_2:55128912-55128931 | None:intergenic | 40.0% | |
| TAAAAGTTGGGATACCCTAG+CGG | - | chr2_2:55129295-55129314 | None:intergenic | 40.0% | |
| ! | GTGGTTCTTGATTAGCTCTT+TGG | - | chr2_2:55129809-55129828 | None:intergenic | 40.0% |
| TGTGTTTGGATGAAGGGTTT+AGG | + | chr2_2:55129943-55129962 | Msa0258650:intron | 40.0% | |
| GTGTTTGGATGAAGGGTTTA+GGG | + | chr2_2:55129944-55129963 | Msa0258650:intron | 40.0% | |
| TGTTTGGATGAAGGGTTTAG+GGG | + | chr2_2:55129945-55129964 | Msa0258650:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr2_2:55130135-55130154 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr2_2:55130139-55130158 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | - | chr2_2:55130145-55130164 | None:intergenic | 40.0% | |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | - | chr2_2:55130146-55130165 | None:intergenic | 40.0% |
| TCAATCCAAACACACCCTAA+AGG | + | chr2_2:55130145-55130164 | Msa0258650:intron | 40.0% | |
| ! | TGGGTTTTTCCGAATAACAC+CGG | + | chr2_2:55130221-55130240 | Msa0258650:intron | 40.0% |
| !! | TATATGTGGCCGGTGTTATT+CGG | - | chr2_2:55130233-55130252 | None:intergenic | 40.0% |
| ! | TCTCTATTTTATGCGGGACT+TGG | + | chr2_2:55130269-55130288 | Msa0258650:intron | 40.0% |
| ! | CTCTATTTTATGCGGGACTT+GGG | + | chr2_2:55130270-55130289 | Msa0258650:intron | 40.0% |
| ! | TTTTGCAGATGCATATGTGG+GGG | + | chr2_2:55130424-55130443 | Msa0258650:intron | 40.0% |
| AAAGGACCAGACTCACTTAA+AGG | + | chr2_2:55130465-55130484 | Msa0258650:CDS | 40.0% | |
| TGTGTTCCTTTAAGTGAGTC+TGG | - | chr2_2:55130474-55130493 | None:intergenic | 40.0% | |
| CCATGTTATTGTTGTGCTCA+CGG | + | chr2_2:55130516-55130535 | Msa0258650:CDS | 40.0% | |
| TCCAAGAGCAAAACCATTGA+AGG | + | chr2_2:55130560-55130579 | Msa0258650:CDS | 40.0% | |
| !! | TCCTTCAATGGTTTTGCTCT+TGG | - | chr2_2:55130564-55130583 | None:intergenic | 40.0% |
| !! | AAGTTTTGGTATTGCACCTG+TGG | + | chr2_2:55130705-55130724 | Msa0258650:CDS | 40.0% |
| CATGTTAGATCCTTCGGAAA+AGG | + | chr2_2:55130762-55130781 | Msa0258650:CDS | 40.0% | |
| TCTTCAAAGCCATCAAGAGA+AGG | - | chr2_2:55130801-55130820 | None:intergenic | 40.0% | |
| GAGAAAGAATGCAGCAATAC+TGG | + | chr2_2:55130822-55130841 | Msa0258650:CDS | 40.0% | |
| GCTCATGCATGATCATGATA+TGG | + | chr2_2:55130864-55130883 | Msa0258650:exon | 40.0% | |
| GATGAGAGTGAGGAATTAGG+TGG | - | chr2_2:55127702-55127721 | None:intergenic | 45.0% | |
| TGAAGGAGATGATGAGAGTG+AGG | - | chr2_2:55127712-55127731 | None:intergenic | 45.0% | |
| GGCTTAACTCCACTAGAGAT+TGG | - | chr2_2:55127786-55127805 | None:intergenic | 45.0% | |
| TAGTGGAGTTAAGCCCTTTG+AGG | + | chr2_2:55127791-55127810 | Msa0258650:CDS | 45.0% | |
| CACATTGGATTGCCTAACGT+AGG | + | chr2_2:55127885-55127904 | Msa0258650:CDS | 45.0% | |
| ACAAGAATCTGAGCAGGAGT+TGG | - | chr2_2:55128026-55128045 | None:intergenic | 45.0% | |
| ACTCCTGCTCAGATTCTTGT+TGG | + | chr2_2:55128026-55128045 | Msa0258650:CDS | 45.0% | |
| ATGGAGCAAGCAAACTGCAT+AGG | - | chr2_2:55128053-55128072 | None:intergenic | 45.0% | |
| AAAAGTTGGGATACCCTAGC+GGG | - | chr2_2:55129294-55129313 | None:intergenic | 45.0% | |
| GTTTGGATGAAGGGTTTAGG+GGG | + | chr2_2:55129946-55129965 | Msa0258650:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr2_2:55130134-55130153 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr2_2:55130136-55130155 | None:intergenic | 45.0% | |
| TCTCTATTCCACGTGGGATT+TGG | + | chr2_2:55130201-55130220 | Msa0258650:intron | 45.0% | |
| CTCTATTCCACGTGGGATTT+GGG | + | chr2_2:55130202-55130221 | Msa0258650:intron | 45.0% | |
| CCGTGAGCACAACAATAACA+TGG | - | chr2_2:55130519-55130538 | None:intergenic | 45.0% | |
| AGCCATCAAGAGAAGGAAGT+GGG | - | chr2_2:55130794-55130813 | None:intergenic | 45.0% | |
| AAGCCATCAAGAGAAGGAAG+TGG | - | chr2_2:55130795-55130814 | None:intergenic | 45.0% | |
| !!! | TAATAATTAAATTTTATACA+CGG | - | chr2_2:55128933-55128952 | None:intergenic | 5.0% |
| ATCCCATGGTCGTCCTCAAA+GGG | - | chr2_2:55127807-55127826 | None:intergenic | 50.0% | |
| GAAGGTGGAACATGTGACTG+TGG | + | chr2_2:55127857-55127876 | Msa0258650:CDS | 50.0% | |
| ! | GTGACTGTGGCTTTGCACAT+TGG | + | chr2_2:55127870-55127889 | Msa0258650:CDS | 50.0% |
| GGTCCAACAAGAATCTGAGC+AGG | - | chr2_2:55128032-55128051 | None:intergenic | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+GGG | - | chr2_2:55130130-55130149 | None:intergenic | 50.0% | |
| GGAAAAACCCAAATCCCACG+TGG | - | chr2_2:55130212-55130231 | None:intergenic | 50.0% | |
| ! | GGGGGCATGGATCAGAATTT+AGG | + | chr2_2:55130442-55130461 | Msa0258650:CDS | 50.0% |
| CACAACCAGCAGCAATGCTA+AGG | + | chr2_2:55130490-55130509 | Msa0258650:CDS | 50.0% | |
| ! | TGGGGAATGACCTTTTCCGA+AGG | - | chr2_2:55130775-55130794 | None:intergenic | 50.0% |
| TCCCCACTTCCTTCTCTTGA+TGG | + | chr2_2:55130789-55130808 | Msa0258650:CDS | 50.0% | |
| GCCATCAAGAGAAGGAAGTG+GGG | - | chr2_2:55130793-55130812 | None:intergenic | 50.0% | |
| ! | AAGCCCTTTGAGGACGACCA+TGG | + | chr2_2:55127801-55127820 | Msa0258650:CDS | 55.0% |
| ! | AGCCCTTTGAGGACGACCAT+GGG | + | chr2_2:55127802-55127821 | Msa0258650:CDS | 55.0% |
| CATCCCATGGTCGTCCTCAA+AGG | - | chr2_2:55127808-55127827 | None:intergenic | 55.0% | |
| GGACGACCATGGGATGCAAA+AGG | + | chr2_2:55127812-55127831 | Msa0258650:CDS | 55.0% | |
| GGATGAAGGGTTTAGGGGGA+TGG | + | chr2_2:55129950-55129969 | Msa0258650:intron | 55.0% | |
| GATTGAGGGTTTAGGAGGGG+AGG | - | chr2_2:55130131-55130150 | None:intergenic | 55.0% | |
| CAGATGCATATGTGGGGGCA+TGG | + | chr2_2:55130429-55130448 | Msa0258650:intron | 55.0% | |
| TTGTTGTCCCGCTCCCGCTA+GGG | + | chr2_2:55129278-55129297 | Msa0258650:intron | 60.0% | |
| TTGGGATACCCTAGCGGGAG+CGG | - | chr2_2:55129289-55129308 | None:intergenic | 60.0% | |
| GGCAGCCTTAGCATTGCTGC+TGG | - | chr2_2:55130498-55130517 | None:intergenic | 60.0% | |
| ! | CTTGTTGTCCCGCTCCCGCT+AGG | + | chr2_2:55129277-55129296 | Msa0258650:intron | 65.0% |
| TGGGATACCCTAGCGGGAGC+GGG | - | chr2_2:55129288-55129307 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 55127566 | 55131080 | 55127566 | ID=Msa0258650;Name=Msa0258650 |
| chr2_2 | mRNA | 55127566 | 55131080 | 55127566 | ID=Msa0258650-mRNA-1;Parent=Msa0258650;Name=Msa0258650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|205|310 |
| chr2_2 | exon | 55127566 | 55128109 | 55127566 | ID=Msa0258650-mRNA-1:exon:16654;Parent=Msa0258650-mRNA-1 |
| chr2_2 | exon | 55130432 | 55131080 | 55130432 | ID=Msa0258650-mRNA-1:exon:16655;Parent=Msa0258650-mRNA-1 |
| chr2_2 | five_prime_UTR | 55127566 | 55127620 | 55127566 | ID=Msa0258650-mRNA-1:five_prime_utr;Parent=Msa0258650-mRNA-1 |
| chr2_2 | CDS | 55127621 | 55128109 | 55127621 | ID=Msa0258650-mRNA-1:cds;Parent=Msa0258650-mRNA-1 |
| chr2_2 | CDS | 55130432 | 55130875 | 55130432 | ID=Msa0258650-mRNA-1:cds;Parent=Msa0258650-mRNA-1 |
| chr2_2 | three_prime_UTR | 55130876 | 55131080 | 55130876 | ID=Msa0258650-mRNA-1:three_prime_utr;Parent=Msa0258650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
