Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258720 | XP_024631624.1 | 96.785 | 311 | 7 | 2 | 1 | 310 | 1 | 309 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258720 | sp|Q9SGD1|ZWIP3_ARATH | 56.845 | 336 | 100 | 11 | 8 | 300 | 3 | 336 | 2.21e-116 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258720 | A0A396JBA6 | 96.785 | 311 | 7 | 2 | 1 | 310 | 1 | 309 | 0.0 | 623 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0258720 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0258650 | Msa0258720 | 0.906373 | 1.589723e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258720 | MtrunA17_Chr2g0321291 | 96.785 | 311 | 7 | 2 | 1 | 310 | 1 | 309 | 0.0 | 623 |
| Msa0258720 | MtrunA17_Chr4g0026521 | 66.124 | 307 | 82 | 6 | 6 | 308 | 5 | 293 | 4.44e-128 | 367 |
| Msa0258720 | MtrunA17_Chr7g0258011 | 62.195 | 246 | 80 | 4 | 73 | 306 | 103 | 347 | 5.71e-109 | 320 |
| Msa0258720 | MtrunA17_Chr1g0173841 | 60.643 | 249 | 75 | 5 | 78 | 306 | 141 | 386 | 7.14e-106 | 314 |
| Msa0258720 | MtrunA17_Chr8g0352011 | 64.444 | 225 | 63 | 3 | 82 | 296 | 110 | 327 | 1.04e-103 | 306 |
| Msa0258720 | MtrunA17_Chr2g0328921 | 63.636 | 220 | 68 | 3 | 69 | 282 | 73 | 286 | 1.70e-101 | 300 |
| Msa0258720 | MtrunA17_Chr5g0422571 | 63.679 | 212 | 62 | 4 | 74 | 284 | 55 | 252 | 1.47e-97 | 289 |
| Msa0258720 | MtrunA17_Chr4g0053341 | 57.724 | 246 | 87 | 2 | 46 | 290 | 1 | 230 | 5.23e-95 | 280 |
| Msa0258720 | MtrunA17_Chr1g0198651 | 77.707 | 157 | 32 | 1 | 131 | 284 | 99 | 255 | 5.52e-94 | 280 |
| Msa0258720 | MtrunA17_Chr1g0200421 | 39.873 | 158 | 81 | 7 | 141 | 289 | 245 | 397 | 8.81e-27 | 109 |
| Msa0258720 | MtrunA17_Chr2g0320341 | 35.220 | 159 | 95 | 4 | 134 | 285 | 231 | 388 | 1.19e-22 | 97.1 |
| Msa0258720 | MtrunA17_Chr8g0382121 | 38.571 | 140 | 81 | 4 | 149 | 284 | 127 | 265 | 4.55e-21 | 91.3 |
| Msa0258720 | MtrunA17_Chr4g0029521 | 38.129 | 139 | 77 | 4 | 141 | 278 | 61 | 191 | 4.09e-20 | 90.5 |
| Msa0258720 | MtrunA17_Chr2g0326381 | 35.616 | 146 | 85 | 4 | 134 | 278 | 48 | 185 | 1.31e-19 | 88.6 |
| Msa0258720 | MtrunA17_Chr1g0151351 | 36.170 | 141 | 81 | 4 | 139 | 278 | 62 | 194 | 5.27e-19 | 87.0 |
| Msa0258720 | MtrunA17_Chr1g0181381 | 34.247 | 146 | 87 | 4 | 134 | 278 | 54 | 191 | 5.69e-19 | 87.0 |
| Msa0258720 | MtrunA17_Chr7g0263941 | 32.973 | 185 | 104 | 7 | 134 | 310 | 50 | 222 | 5.85e-19 | 86.7 |
| Msa0258720 | MtrunA17_Chr3g0123941 | 37.037 | 162 | 91 | 7 | 149 | 306 | 139 | 293 | 9.34e-19 | 85.1 |
| Msa0258720 | MtrunA17_Chr1g0185121 | 35.374 | 147 | 84 | 5 | 134 | 278 | 56 | 193 | 1.22e-18 | 85.9 |
| Msa0258720 | MtrunA17_Chr2g0324991 | 35.211 | 142 | 82 | 5 | 134 | 273 | 8 | 141 | 3.20e-18 | 80.1 |
| Msa0258720 | MtrunA17_Chr1g0162971 | 36.429 | 140 | 77 | 5 | 141 | 278 | 64 | 193 | 3.22e-18 | 84.7 |
| Msa0258720 | MtrunA17_Chr1g0191991 | 36.054 | 147 | 82 | 6 | 134 | 278 | 79 | 215 | 3.52e-18 | 84.7 |
| Msa0258720 | MtrunA17_Chr1g0210821 | 34.694 | 147 | 84 | 5 | 134 | 278 | 60 | 196 | 3.59e-18 | 84.7 |
| Msa0258720 | MtrunA17_Chr7g0268961 | 35.252 | 139 | 80 | 4 | 141 | 278 | 45 | 174 | 3.70e-18 | 84.7 |
| Msa0258720 | MtrunA17_Chr1g0163001 | 34.694 | 147 | 84 | 5 | 134 | 278 | 59 | 195 | 5.07e-18 | 84.3 |
| Msa0258720 | MtrunA17_Chr1g0199101 | 34.694 | 147 | 84 | 5 | 134 | 278 | 63 | 199 | 5.09e-18 | 84.3 |
| Msa0258720 | MtrunA17_Chr8g0342421 | 35.714 | 140 | 78 | 6 | 141 | 278 | 85 | 214 | 6.55e-18 | 84.0 |
| Msa0258720 | MtrunA17_Chr8g0373541 | 33.742 | 163 | 94 | 6 | 118 | 278 | 35 | 185 | 1.08e-17 | 83.2 |
| Msa0258720 | MtrunA17_Chr2g0330171 | 34.694 | 147 | 84 | 6 | 134 | 278 | 62 | 198 | 1.75e-17 | 82.4 |
| Msa0258720 | MtrunA17_Chr4g0040571 | 32.877 | 146 | 88 | 4 | 134 | 278 | 55 | 191 | 1.45e-16 | 80.1 |
| Msa0258720 | MtrunA17_Chr3g0141431 | 33.571 | 140 | 83 | 4 | 139 | 276 | 43 | 174 | 2.42e-16 | 79.0 |
| Msa0258720 | MtrunA17_Chr6g0479921 | 30.496 | 141 | 82 | 5 | 139 | 274 | 50 | 179 | 6.25e-12 | 65.9 |
| Msa0258720 | MtrunA17_Chr8g0375521 | 30.216 | 139 | 86 | 5 | 139 | 274 | 48 | 178 | 6.96e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258720 | AT1G08290.1 | 56.845 | 336 | 100 | 11 | 8 | 300 | 3 | 336 | 2.25e-117 | 342 |
| Msa0258720 | AT1G51220.1 | 51.757 | 313 | 107 | 6 | 19 | 306 | 43 | 336 | 1.47e-103 | 306 |
| Msa0258720 | AT3G20880.1 | 63.158 | 228 | 67 | 2 | 84 | 294 | 176 | 403 | 3.94e-101 | 303 |
| Msa0258720 | AT3G57670.1 | 59.184 | 245 | 67 | 4 | 84 | 296 | 122 | 365 | 1.38e-100 | 300 |
| Msa0258720 | AT1G13290.1 | 65.347 | 202 | 52 | 4 | 84 | 283 | 54 | 239 | 2.75e-93 | 279 |
| Msa0258720 | AT1G34790.1 | 60.090 | 223 | 80 | 3 | 84 | 303 | 83 | 299 | 6.50e-93 | 278 |
| Msa0258720 | AT1G34370.3 | 38.608 | 158 | 85 | 5 | 141 | 289 | 28 | 182 | 7.84e-28 | 109 |
| Msa0258720 | AT1G34370.2 | 38.608 | 158 | 85 | 5 | 141 | 289 | 238 | 392 | 2.82e-27 | 111 |
| Msa0258720 | AT1G34370.1 | 38.608 | 158 | 85 | 5 | 141 | 289 | 238 | 392 | 2.82e-27 | 111 |
| Msa0258720 | AT5G22890.1 | 39.735 | 151 | 83 | 5 | 141 | 284 | 211 | 360 | 1.79e-24 | 102 |
| Msa0258720 | AT5G03150.1 | 36.691 | 139 | 79 | 4 | 141 | 278 | 76 | 206 | 4.48e-20 | 90.9 |
| Msa0258720 | AT1G55110.3 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 1.17e-18 | 86.3 |
| Msa0258720 | AT1G55110.1 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 1.17e-18 | 86.3 |
| Msa0258720 | AT1G55110.2 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 1.17e-18 | 86.3 |
| Msa0258720 | AT5G66730.1 | 35.915 | 142 | 79 | 5 | 139 | 278 | 53 | 184 | 1.78e-18 | 85.9 |
| Msa0258720 | AT5G60470.1 | 37.410 | 139 | 78 | 4 | 141 | 278 | 58 | 188 | 2.05e-18 | 85.5 |
| Msa0258720 | AT5G60470.3 | 37.410 | 139 | 78 | 4 | 141 | 278 | 63 | 193 | 2.14e-18 | 85.5 |
| Msa0258720 | AT5G60470.2 | 37.410 | 139 | 78 | 4 | 141 | 278 | 67 | 197 | 2.18e-18 | 85.5 |
| Msa0258720 | AT2G02080.1 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.30e-18 | 85.9 |
| Msa0258720 | AT2G02080.4 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.30e-18 | 85.9 |
| Msa0258720 | AT2G02080.5 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.30e-18 | 85.9 |
| Msa0258720 | AT2G02080.3 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 2.30e-18 | 85.9 |
| Msa0258720 | AT4G02670.1 | 35.616 | 146 | 85 | 4 | 134 | 278 | 69 | 206 | 2.58e-18 | 85.1 |
| Msa0258720 | AT4G02670.2 | 35.616 | 146 | 85 | 4 | 134 | 278 | 71 | 208 | 2.74e-18 | 85.1 |
| Msa0258720 | AT3G45260.2 | 36.691 | 139 | 79 | 4 | 141 | 278 | 62 | 192 | 3.69e-18 | 84.7 |
| Msa0258720 | AT3G45260.1 | 36.691 | 139 | 79 | 4 | 141 | 278 | 62 | 192 | 3.69e-18 | 84.7 |
| Msa0258720 | AT2G02070.2 | 34.932 | 146 | 85 | 4 | 134 | 278 | 68 | 204 | 4.63e-18 | 85.1 |
| Msa0258720 | AT2G02070.1 | 34.932 | 146 | 85 | 4 | 134 | 278 | 68 | 204 | 4.63e-18 | 85.1 |
| Msa0258720 | AT2G02080.6 | 36.567 | 134 | 75 | 4 | 146 | 278 | 5 | 129 | 6.27e-18 | 84.3 |
| Msa0258720 | AT2G02080.2 | 36.567 | 134 | 75 | 4 | 146 | 278 | 5 | 129 | 6.27e-18 | 84.3 |
| Msa0258720 | AT1G14580.1 | 34.247 | 146 | 86 | 4 | 134 | 278 | 69 | 205 | 7.74e-18 | 84.0 |
| Msa0258720 | AT1G14580.2 | 34.247 | 146 | 86 | 4 | 134 | 278 | 69 | 205 | 7.74e-18 | 84.0 |
| Msa0258720 | AT1G14580.3 | 34.247 | 146 | 86 | 4 | 134 | 278 | 83 | 219 | 7.97e-18 | 84.0 |
| Msa0258720 | AT5G44160.1 | 33.813 | 139 | 82 | 4 | 141 | 278 | 60 | 189 | 2.01e-17 | 82.8 |
| Msa0258720 | AT1G03840.2 | 34.932 | 146 | 85 | 5 | 134 | 278 | 55 | 191 | 2.12e-17 | 82.8 |
| Msa0258720 | AT1G03840.1 | 34.932 | 146 | 85 | 5 | 134 | 278 | 57 | 193 | 2.13e-17 | 82.8 |
| Msa0258720 | AT5G44160.2 | 32.877 | 146 | 88 | 4 | 134 | 278 | 14 | 150 | 2.28e-17 | 82.4 |
| Msa0258720 | AT3G13810.5 | 34.247 | 146 | 87 | 4 | 134 | 278 | 81 | 218 | 3.47e-17 | 82.4 |
| Msa0258720 | AT3G13810.4 | 34.247 | 146 | 87 | 4 | 134 | 278 | 86 | 223 | 3.73e-17 | 82.0 |
| Msa0258720 | AT3G13810.1 | 34.247 | 146 | 87 | 4 | 134 | 278 | 86 | 223 | 3.73e-17 | 82.0 |
| Msa0258720 | AT3G50700.1 | 34.247 | 146 | 86 | 4 | 134 | 278 | 50 | 186 | 3.96e-17 | 82.0 |
| Msa0258720 | AT3G13810.2 | 34.247 | 146 | 87 | 4 | 134 | 278 | 87 | 224 | 4.07e-17 | 82.0 |
| Msa0258720 | AT3G13810.3 | 34.247 | 146 | 87 | 4 | 134 | 278 | 73 | 210 | 4.11e-17 | 82.0 |
| Msa0258720 | AT3G13810.6 | 34.247 | 146 | 87 | 4 | 134 | 278 | 67 | 204 | 4.22e-17 | 82.0 |
| Msa0258720 | AT1G68130.1 | 31.655 | 139 | 84 | 5 | 139 | 274 | 62 | 192 | 1.63e-12 | 68.2 |
| Msa0258720 | AT1G25250.1 | 29.710 | 138 | 89 | 4 | 139 | 274 | 31 | 162 | 2.39e-12 | 67.4 |
| Msa0258720 | AT1G25250.3 | 30.216 | 139 | 87 | 5 | 139 | 274 | 54 | 185 | 3.19e-12 | 67.0 |
| Msa0258720 | AT2G01940.1 | 30.216 | 139 | 86 | 5 | 139 | 274 | 65 | 195 | 5.67e-11 | 63.5 |
Find 60 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAGCATTTGCTGTTAA+AGG | 0.122625 | 2_2:-55267621 | Msa0258720:CDS |
| TTGAGCCATTCAATGAAATT+TGG | 0.134972 | 2_2:+55270597 | None:intergenic |
| TCCCCACTTCCTTCTCTTGA+TGG | 0.185051 | 2_2:-55267483 | Msa0258720:CDS |
| TGAATATATTTCACAAATCT+AGG | 0.278468 | 2_2:-55270699 | Msa0258720:five_prime_UTR |
| AGTTTGTGTTGATGAGTTAA+AGG | 0.287140 | 2_2:+55270537 | None:intergenic |
| TGAGCCATTCAATGAAATTT+GGG | 0.289191 | 2_2:+55270598 | None:intergenic |
| GATGATGAGAGTGAGGAATT+AGG | 0.300962 | 2_2:+55270570 | None:intergenic |
| AAAGGACCAGACTCACTTAA+AGG | 0.304674 | 2_2:-55267807 | Msa0258720:CDS |
| GAGAAAGAATGCAGCAATAC+TGG | 0.341279 | 2_2:-55267450 | Msa0258720:CDS |
| AAACCCCAAATTTCATTGAA+TGG | 0.361241 | 2_2:-55270602 | Msa0258720:CDS |
| CATATTGTTGTATCTATTGA+AGG | 0.375727 | 2_2:+55270188 | None:intergenic |
| TGAACATGATGAGAAGAATA+AGG | 0.376871 | 2_2:-55270352 | Msa0258720:CDS |
| CATTTGCTGTTAAAGGTGAT+TGG | 0.376909 | 2_2:-55267614 | Msa0258720:CDS |
| GCTCATGCATGATCATGATA+TGG | 0.396038 | 2_2:-55267408 | Msa0258720:exon |
| ATTGAAGGTCTTACTGCATA+TGG | 0.402051 | 2_2:+55270203 | None:intergenic |
| TTAAGGAGGAGAGAAGGTTT+TGG | 0.404432 | 2_2:-55270275 | Msa0258720:CDS |
| TGTGTTCCTTTAAGTGAGTC+TGG | 0.407901 | 2_2:+55267801 | None:intergenic |
| AAAGATCATGTTAGATCCTT+CGG | 0.408333 | 2_2:-55267516 | Msa0258720:CDS |
| ACTCCTGCTCAGATTCTTGT+TGG | 0.408478 | 2_2:-55270246 | Msa0258720:CDS |
| CAATGAAATTTGGGGTTTGA+AGG | 0.444233 | 2_2:+55270607 | None:intergenic |
| ATCTCTCTCTAGAATTAAGA+TGG | 0.445216 | 2_2:-55270670 | Msa0258720:exon |
| TCCAAGAGCAAAACCATTGA+AGG | 0.445743 | 2_2:-55267712 | Msa0258720:CDS |
| TAGTGGAGTTAAGCCCTTTG+AGG | 0.446748 | 2_2:-55270481 | Msa0258720:CDS |
| CTAGAATTAAGATGGGTTTG+AGG | 0.448542 | 2_2:-55270662 | Msa0258720:exon |
| CATCCCATGGTCGTCCTCAA+AGG | 0.449561 | 2_2:+55270467 | None:intergenic |
| TAGAATTAAGATGGGTTTGA+GGG | 0.453608 | 2_2:-55270661 | Msa0258720:exon |
| CCATGTTATTGTTGTGCTCA+CGG | 0.477382 | 2_2:-55267756 | Msa0258720:CDS |
| CATGTTAGATCCTTCGGAAA+AGG | 0.486223 | 2_2:-55267510 | Msa0258720:CDS |
| GTGTTTAAAATCTGAACCAC+AGG | 0.489686 | 2_2:+55267551 | None:intergenic |
| AGAGTTCTGAAATCCTTCAA+TGG | 0.491722 | 2_2:+55267699 | None:intergenic |
| GGCTTAACTCCACTAGAGAT+TGG | 0.493614 | 2_2:+55270489 | None:intergenic |
| GGCAGCCTTAGCATTGCTGC+TGG | 0.503446 | 2_2:+55267777 | None:intergenic |
| TGAAGTAAAAGAAGAGAAGG+TGG | 0.512589 | 2_2:-55270430 | Msa0258720:CDS |
| GAATATATTTCACAAATCTA+GGG | 0.517022 | 2_2:-55270698 | Msa0258720:five_prime_UTR |
| ATCCCATGGTCGTCCTCAAA+GGG | 0.519930 | 2_2:+55270468 | None:intergenic |
| GATTTGTGCTGTTGAAATTG+TGG | 0.524507 | 2_2:-55267328 | Msa0258720:three_prime_UTR |
| TGATGAGTTAAAGGCGATGA+AGG | 0.525454 | 2_2:+55270546 | None:intergenic |
| TGAAGGAGATGATGAGAGTG+AGG | 0.539316 | 2_2:+55270563 | None:intergenic |
| CACAACCAGCAGCAATGCTA+AGG | 0.552239 | 2_2:-55267782 | Msa0258720:CDS |
| GATGAGAGTGAGGAATTAGG+TGG | 0.553504 | 2_2:+55270573 | None:intergenic |
| ACTCATTACAAAAGAAAGCA+TGG | 0.557148 | 2_2:-55267672 | Msa0258720:CDS |
| GGACGACCATGGGATGCAAA+AGG | 0.560614 | 2_2:-55270460 | Msa0258720:CDS |
| TCAGATTCACATCCTACGTT+AGG | 0.564487 | 2_2:+55270375 | None:intergenic |
| AGCCATCAAGAGAAGGAAGT+GGG | 0.568332 | 2_2:+55267481 | None:intergenic |
| GTGACTGTGGCTTTGCACAT+TGG | 0.568567 | 2_2:-55270402 | Msa0258720:CDS |
| ACAAGAATCTGAGCAGGAGT+TGG | 0.574558 | 2_2:+55270249 | None:intergenic |
| GGTCCAACAAGAATCTGAGC+AGG | 0.582655 | 2_2:+55270243 | None:intergenic |
| AAGCCCTTTGAGGACGACCA+TGG | 0.585506 | 2_2:-55270471 | Msa0258720:CDS |
| TCTTCAAAGCCATCAAGAGA+AGG | 0.586437 | 2_2:+55267474 | None:intergenic |
| AGCCCTTTGAGGACGACCAT+GGG | 0.589212 | 2_2:-55270470 | Msa0258720:CDS |
| AAGCCATCAAGAGAAGGAAG+TGG | 0.595192 | 2_2:+55267480 | None:intergenic |
| CAATAGATACAACAATATGC+AGG | 0.595484 | 2_2:-55270184 | Msa0258720:intron |
| TCTCTCTCTAGAATTAAGAT+GGG | 0.611781 | 2_2:-55270669 | Msa0258720:exon |
| ATGGAGCAAGCAAACTGCAT+AGG | 0.613273 | 2_2:+55270222 | None:intergenic |
| GAGCCATTCAATGAAATTTG+GGG | 0.617863 | 2_2:+55270599 | None:intergenic |
| CCGTGAGCACAACAATAACA+TGG | 0.626600 | 2_2:+55267756 | None:intergenic |
| CATGGATCAGAATTTAGGAA+AGG | 0.639859 | 2_2:-55267825 | Msa0258720:CDS |
| CACATTGGATTGCCTAACGT+AGG | 0.667692 | 2_2:-55270387 | Msa0258720:CDS |
| GCCATCAAGAGAAGGAAGTG+GGG | 0.668776 | 2_2:+55267482 | None:intergenic |
| GAAGGTGGAACATGTGACTG+TGG | 0.730758 | 2_2:-55270415 | Msa0258720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTAAATTTTATACAC+GGG | + | chr2_2:55268580-55268599 | None:intergenic | 10.0% |
| !! | TTAGTCATATTAAATTATAT+TGG | + | chr2_2:55268760-55268779 | None:intergenic | 10.0% |
| !! | AATATAATTTAATATGACTA+AGG | - | chr2_2:55268759-55268778 | Msa0258720:intron | 10.0% |
| !! | AATAGTTCAATTAATTACAT+TGG | - | chr2_2:55268289-55268308 | Msa0258720:intron | 15.0% |
| !!! | ATAAATTTGAAATAAAGTGA+CGG | + | chr2_2:55268459-55268478 | None:intergenic | 15.0% |
| !! | ACTTACAAAATAAATATATG+TGG | + | chr2_2:55269895-55269914 | None:intergenic | 15.0% |
| !!! | TTCTAATTTCATAGTTTTTT+AGG | + | chr2_2:55270001-55270020 | None:intergenic | 15.0% |
| !! | TGAATATATTTCACAAATCT+AGG | - | chr2_2:55267221-55267240 | Msa0258720:three_prime_UTR | 20.0% |
| !! | GAATATATTTCACAAATCTA+GGG | - | chr2_2:55267222-55267241 | Msa0258720:three_prime_UTR | 20.0% |
| !!! | TCTTATCAAGAATTTTTCAA+GGG | - | chr2_2:55267932-55267951 | Msa0258720:intron | 20.0% |
| !! | AATTTGTATTTAGTAGTCTT+AGG | - | chr2_2:55267957-55267976 | Msa0258720:intron | 20.0% |
| !! | ACTATTGAAGTGATAAAATA+TGG | + | chr2_2:55268275-55268294 | None:intergenic | 20.0% |
| !! | TAAGTATAATTATGTGACTT+TGG | + | chr2_2:55268647-55268666 | None:intergenic | 20.0% |
| !!! | TCACATTTTTTAAAGTGTAA+AGG | + | chr2_2:55268892-55268911 | None:intergenic | 20.0% |
| !!! | TAATTTGTTCTTATGTTTCA+AGG | - | chr2_2:55269248-55269267 | Msa0258720:intron | 20.0% |
| !!! | TAGATCAAACACTTTTTTAT+AGG | - | chr2_2:55269373-55269392 | Msa0258720:intron | 20.0% |
| !!! | TTTGGTTTTTCTTATGTAAT+TGG | + | chr2_2:55269439-55269458 | None:intergenic | 20.0% |
| !! | ATAAAGAGTAAAATCCTTTA+GGG | + | chr2_2:55269810-55269829 | None:intergenic | 20.0% |
| !! | AATAAAGAGTAAAATCCTTT+AGG | + | chr2_2:55269811-55269830 | None:intergenic | 20.0% |
| !!! | TAAGTTATCTCTATTTTATG+CGG | - | chr2_2:55269910-55269929 | Msa0258720:intron | 20.0% |
| !! | ACTATGAAATTAGAATTGAA+TGG | - | chr2_2:55270006-55270025 | Msa0258720:intron | 20.0% |
| ! | TAAAAACTGGAAAGTTTCTT+GGG | + | chr2_2:55267411-55267430 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTAAAAGAAGAGA+AGG | - | chr2_2:55267487-55267506 | Msa0258720:CDS | 25.0% |
| !!! | TAAGGTTTTTGATTGTGTTA+AGG | - | chr2_2:55267586-55267605 | Msa0258720:CDS | 25.0% |
| ! | CATATTGTTGTATCTATTGA+AGG | + | chr2_2:55267735-55267754 | None:intergenic | 25.0% |
| !! | ATTTTTCCCTAAAAATCGAA+GGG | + | chr2_2:55267873-55267892 | None:intergenic | 25.0% |
| !! | TATTTTTCCCTAAAAATCGA+AGG | + | chr2_2:55267874-55267893 | None:intergenic | 25.0% |
| !! | GTCTTATCAAGAATTTTTCA+AGG | - | chr2_2:55267931-55267950 | Msa0258720:intron | 25.0% |
| ! | CAAAAGAAAAGAAAACCTAA+GGG | + | chr2_2:55267993-55268012 | None:intergenic | 25.0% |
| ! | TCAAAAGAAAAGAAAACCTA+AGG | + | chr2_2:55267994-55268013 | None:intergenic | 25.0% |
| ! | TGAAAGCAAATTTCTCTTAT+AGG | - | chr2_2:55268011-55268030 | Msa0258720:intron | 25.0% |
| ! | GAAAGCAAATTTCTCTTATA+GGG | - | chr2_2:55268012-55268031 | Msa0258720:intron | 25.0% |
| ! | TTCAAATTAGATAAGAGAGA+CGG | - | chr2_2:55268151-55268170 | Msa0258720:intron | 25.0% |
| ! | TAAGAAGTTATGTGTATGAA+TGG | + | chr2_2:55268251-55268270 | None:intergenic | 25.0% |
| ! | AAATAGCATAGTCTATAGTT+GGG | + | chr2_2:55268358-55268377 | None:intergenic | 25.0% |
| ! | TAAATAGCATAGTCTATAGT+TGG | + | chr2_2:55268359-55268378 | None:intergenic | 25.0% |
| !!! | TTTTTTTGACAAAACAGCAT+AGG | + | chr2_2:55268521-55268540 | None:intergenic | 25.0% |
| ! | AGGTGTTTAACATTATGATT+AGG | - | chr2_2:55268779-55268798 | Msa0258720:intron | 25.0% |
| !! | AATGATTGTTTTCTTCTTGA+TGG | + | chr2_2:55268818-55268837 | None:intergenic | 25.0% |
| ! | GAAAGCAAAAATAAATGAGA+GGG | + | chr2_2:55268870-55268889 | None:intergenic | 25.0% |
| ! | AAAAATGTGAGCAAAATGAA+TGG | - | chr2_2:55268902-55268921 | Msa0258720:intron | 25.0% |
| !! | AAGATATGGTCTTTTACTAT+AGG | + | chr2_2:55268989-55269008 | None:intergenic | 25.0% |
| ! | TATTGCATACTCTTTGATAT+GGG | + | chr2_2:55269032-55269051 | None:intergenic | 25.0% |
| ! | ATATTGCATACTCTTTGATA+TGG | + | chr2_2:55269033-55269052 | None:intergenic | 25.0% |
| !! | ATTCTTCATAGATTCTAAGA+AGG | + | chr2_2:55269077-55269096 | None:intergenic | 25.0% |
| ! | AGTGTTTGATCTAATTCATA+AGG | + | chr2_2:55269366-55269385 | None:intergenic | 25.0% |
| !!! | ATTGATGATGATGATGATAA+TGG | - | chr2_2:55269477-55269496 | Msa0258720:intron | 25.0% |
| !! | AACACATCCTTAATTTTGTA+AGG | + | chr2_2:55269577-55269596 | None:intergenic | 25.0% |
| ! | TACAAAATTAAGGATGTGTT+TGG | - | chr2_2:55269577-55269596 | Msa0258720:intron | 25.0% |
| ! | ACAAAATAAATATATGTGGC+CGG | + | chr2_2:55269891-55269910 | None:intergenic | 25.0% |
| !! | AAGTTATCTCTATTTTATGC+GGG | - | chr2_2:55269911-55269930 | Msa0258720:intron | 25.0% |
| !! | AATATATGGCTAGTGTTATT+TGG | + | chr2_2:55269949-55269968 | None:intergenic | 25.0% |
| !! | AGAAAAATTGTGGAAAGTTT+TGG | - | chr2_2:55270339-55270358 | Msa0258720:CDS | 25.0% |
| !! | ATCTCTCTCTAGAATTAAGA+TGG | - | chr2_2:55267250-55267269 | Msa0258720:three_prime_UTR | 30.0% |
| !! | TCTCTCTCTAGAATTAAGAT+GGG | - | chr2_2:55267251-55267270 | Msa0258720:three_prime_UTR | 30.0% |
| ! | TAGAATTAAGATGGGTTTGA+GGG | - | chr2_2:55267259-55267278 | Msa0258720:three_prime_UTR | 30.0% |
| AAACCCCAAATTTCATTGAA+TGG | - | chr2_2:55267318-55267337 | Msa0258720:three_prime_UTR | 30.0% | |
| TGAGCCATTCAATGAAATTT+GGG | + | chr2_2:55267325-55267344 | None:intergenic | 30.0% | |
| TTGAGCCATTCAATGAAATT+TGG | + | chr2_2:55267326-55267345 | None:intergenic | 30.0% | |
| ! | AGTTTGTGTTGATGAGTTAA+AGG | + | chr2_2:55267386-55267405 | None:intergenic | 30.0% |
| GTAAAAACTGGAAAGTTTCT+TGG | + | chr2_2:55267412-55267431 | None:intergenic | 30.0% | |
| TGAACATGATGAGAAGAATA+AGG | - | chr2_2:55267568-55267587 | Msa0258720:CDS | 30.0% | |
| CAATAGATACAACAATATGC+AGG | - | chr2_2:55267736-55267755 | Msa0258720:CDS | 30.0% | |
| ! | TTCTTAACCCTTCGATTTTT+AGG | - | chr2_2:55267801-55267820 | Msa0258720:CDS | 30.0% |
| ! | TCTTAACCCTTCGATTTTTA+GGG | - | chr2_2:55267802-55267821 | Msa0258720:CDS | 30.0% |
| AATTTCCCCTAAAAATCGAA+GGG | + | chr2_2:55267811-55267830 | None:intergenic | 30.0% | |
| AAATTTCCCCTAAAAATCGA+AGG | + | chr2_2:55267812-55267831 | None:intergenic | 30.0% | |
| TAAAAATCGAAGGGTTAAGA+AGG | + | chr2_2:55267802-55267821 | None:intergenic | 30.0% | |
| ! | TTCTTAACCCTTCGATTTTT+AGG | - | chr2_2:55267801-55267820 | Msa0258720:CDS | 30.0% |
| ! | TCTTAACCCTTCGATTTTTA+GGG | - | chr2_2:55267802-55267821 | Msa0258720:CDS | 30.0% |
| TTAGGTCAATAATTTCCCTT+AGG | - | chr2_2:55267975-55267994 | Msa0258720:intron | 30.0% | |
| ATAGTAACGAAGGATATAGA+GGG | + | chr2_2:55268606-55268625 | None:intergenic | 30.0% | |
| ATTTGTCATCATAGTAACGA+AGG | + | chr2_2:55268616-55268635 | None:intergenic | 30.0% | |
| GGAAAGCAAAAATAAATGAG+AGG | + | chr2_2:55268871-55268890 | None:intergenic | 30.0% | |
| ! | GTATCCCAACTTTTAGTAAA+AGG | - | chr2_2:55268948-55268967 | Msa0258720:intron | 30.0% |
| ! | AGAGCCTTTTACTAAAAGTT+GGG | + | chr2_2:55268955-55268974 | None:intergenic | 30.0% |
| ! | AAGAGCCTTTTACTAAAAGT+TGG | + | chr2_2:55268956-55268975 | None:intergenic | 30.0% |
| ! | AATACAAAGGCATGAAGATA+TGG | + | chr2_2:55269003-55269022 | None:intergenic | 30.0% |
| ATATGGGAAAGGAAATACAA+AGG | + | chr2_2:55269016-55269035 | None:intergenic | 30.0% | |
| AATTCTAGCACTCCTTATTA+TGG | - | chr2_2:55269137-55269156 | Msa0258720:intron | 30.0% | |
| ATTCTAGCACTCCTTATTAT+GGG | - | chr2_2:55269138-55269157 | Msa0258720:intron | 30.0% | |
| TAAGTTGCTTGATGTATACT+AGG | - | chr2_2:55269215-55269234 | Msa0258720:intron | 30.0% | |
| AAGTTGCTTGATGTATACTA+GGG | - | chr2_2:55269216-55269235 | Msa0258720:intron | 30.0% | |
| CTTCTTTCTTGTCGATAAAA+AGG | - | chr2_2:55269273-55269292 | Msa0258720:intron | 30.0% | |
| TATCATCATCATCATCAATG+TGG | + | chr2_2:55269476-55269495 | None:intergenic | 30.0% | |
| TCGTCATCCTTACAAAATTA+AGG | - | chr2_2:55269567-55269586 | Msa0258720:intron | 30.0% | |
| ! | TATTTTATCTCTATTCCACG+TGG | - | chr2_2:55269842-55269861 | Msa0258720:intron | 30.0% |
| ! | ATTTTATCTCTATTCCACGT+GGG | - | chr2_2:55269843-55269862 | Msa0258720:intron | 30.0% |
| GTTGCGATCAAGAAAATATA+TGG | + | chr2_2:55269963-55269982 | None:intergenic | 30.0% | |
| ! | GCTTTCTTTTGTAATGAGTT+TGG | + | chr2_2:55270247-55270266 | None:intergenic | 30.0% |
| ACTCATTACAAAAGAAAGCA+TGG | - | chr2_2:55270248-55270267 | Msa0258720:CDS | 30.0% | |
| ! | GAACATTTTCTGCAGATAAA+TGG | + | chr2_2:55270281-55270300 | None:intergenic | 30.0% |
| !! | TCTAAAGCATTTGCTGTTAA+AGG | - | chr2_2:55270299-55270318 | Msa0258720:CDS | 30.0% |
| AGAACTCATGAGAAAAATTG+TGG | - | chr2_2:55270329-55270348 | Msa0258720:CDS | 30.0% | |
| AAAGATCATGTTAGATCCTT+CGG | - | chr2_2:55270404-55270423 | Msa0258720:CDS | 30.0% | |
| ! | CTAGAATTAAGATGGGTTTG+AGG | - | chr2_2:55267258-55267277 | Msa0258720:three_prime_UTR | 35.0% |
| ! | CAATGAAATTTGGGGTTTGA+AGG | + | chr2_2:55267316-55267335 | None:intergenic | 35.0% |
| GAGCCATTCAATGAAATTTG+GGG | + | chr2_2:55267324-55267343 | None:intergenic | 35.0% | |
| CACTAGAGATTGGTAAAAAC+TGG | + | chr2_2:55267424-55267443 | None:intergenic | 35.0% | |
| ! | CAGTTTTTACCAATCTCTAG+TGG | - | chr2_2:55267422-55267441 | Msa0258720:CDS | 35.0% |
| TGAAGTAAAAGAAGAGAAGG+TGG | - | chr2_2:55267490-55267509 | Msa0258720:CDS | 35.0% | |
| GAATTGAAGAAAAACGTGCA+TGG | - | chr2_2:55267614-55267633 | Msa0258720:CDS | 35.0% | |
| !!! | CGTGCATGGTTTTTGTTTTA+AGG | - | chr2_2:55267628-55267647 | Msa0258720:CDS | 35.0% |
| !!! | GCATGGTTTTTGTTTTAAGG+AGG | - | chr2_2:55267631-55267650 | Msa0258720:CDS | 35.0% |
| !!! | TTTGTTTTAAGGAGGAGAGA+AGG | - | chr2_2:55267639-55267658 | Msa0258720:CDS | 35.0% |
| ATTGAAGGTCTTACTGCATA+TGG | + | chr2_2:55267720-55267739 | None:intergenic | 35.0% | |
| AGATACAACAATATGCAGGT+TGG | - | chr2_2:55267740-55267759 | Msa0258720:CDS | 35.0% | |
| !! | ACAATATGCAGGTTGGTAAT+TGG | - | chr2_2:55267747-55267766 | Msa0258720:CDS | 35.0% |
| !! | CTTAACCCTTCGATTTTTAG+GGG | - | chr2_2:55267803-55267822 | Msa0258720:CDS | 35.0% |
| TTGCGTATGAAGTATGAACT+AGG | + | chr2_2:55268217-55268236 | None:intergenic | 35.0% | |
| ! | TTTTGACAAAACAGCATAGG+AGG | + | chr2_2:55268518-55268537 | None:intergenic | 35.0% |
| TCATGTTAAACTAGCATAGG+GGG | + | chr2_2:55268557-55268576 | None:intergenic | 35.0% | |
| GTCATGTTAAACTAGCATAG+GGG | + | chr2_2:55268558-55268577 | None:intergenic | 35.0% | |
| GGTCATGTTAAACTAGCATA+GGG | + | chr2_2:55268559-55268578 | None:intergenic | 35.0% | |
| CATAGTAACGAAGGATATAG+AGG | + | chr2_2:55268607-55268626 | None:intergenic | 35.0% | |
| CATACTCTTTGATATGGGAA+AGG | + | chr2_2:55269027-55269046 | None:intergenic | 35.0% | |
| CAAATACAACGCCCATAATA+AGG | + | chr2_2:55269152-55269171 | None:intergenic | 35.0% | |
| !! | GATGATGATGATAATGGTGA+TGG | - | chr2_2:55269483-55269502 | Msa0258720:intron | 35.0% |
| TTAAGGATGTGTTTGGATGA+AGG | - | chr2_2:55269584-55269603 | Msa0258720:intron | 35.0% | |
| TAAGGATGTGTTTGGATGAA+GGG | - | chr2_2:55269585-55269604 | Msa0258720:intron | 35.0% | |
| !! | AAAATCCTTTAGGGTGTGTT+TGG | + | chr2_2:55269801-55269820 | None:intergenic | 35.0% |
| ! | TCATTTTGCAGATGCATATG+TGG | - | chr2_2:55270069-55270088 | Msa0258720:intron | 35.0% |
| ! | CATTTTGCAGATGCATATGT+GGG | - | chr2_2:55270070-55270089 | Msa0258720:intron | 35.0% |
| ! | ATTTTGCAGATGCATATGTG+GGG | - | chr2_2:55270071-55270090 | Msa0258720:intron | 35.0% |
| CATGGATCAGAATTTAGGAA+AGG | - | chr2_2:55270095-55270114 | Msa0258720:intron | 35.0% | |
| !! | AGAGTTCTGAAATCCTTCAA+TGG | + | chr2_2:55270224-55270243 | None:intergenic | 35.0% |
| !! | CATTTGCTGTTAAAGGTGAT+TGG | - | chr2_2:55270306-55270325 | Msa0258720:CDS | 35.0% |
| ! | GTGTTTAAAATCTGAACCAC+AGG | + | chr2_2:55270372-55270391 | None:intergenic | 35.0% |
| ! | GATTTGTGCTGTTGAAATTG+TGG | - | chr2_2:55270592-55270611 | Msa0258720:CDS | 35.0% |
| GATGATGAGAGTGAGGAATT+AGG | + | chr2_2:55267353-55267372 | None:intergenic | 40.0% | |
| TGATGAGTTAAAGGCGATGA+AGG | + | chr2_2:55267377-55267396 | None:intergenic | 40.0% | |
| ! | AATCTTCCTTTTGCATCCCA+TGG | + | chr2_2:55267469-55267488 | None:intergenic | 40.0% |
| TCAGATTCACATCCTACGTT+AGG | + | chr2_2:55267548-55267567 | None:intergenic | 40.0% | |
| ! | TTAAGGAGGAGAGAAGGTTT+TGG | - | chr2_2:55267645-55267664 | Msa0258720:CDS | 40.0% |
| CTTAATTGTGCGTCTTGTGT+CGG | - | chr2_2:55268481-55268500 | Msa0258720:intron | 40.0% | |
| GGGTCATGTTAAACTAGCAT+AGG | + | chr2_2:55268560-55268579 | None:intergenic | 40.0% | |
| TAAAAGTTGGGATACCCTAG+CGG | + | chr2_2:55268943-55268962 | None:intergenic | 40.0% | |
| ! | GTGGTTCTTGATTAGCTCTT+TGG | + | chr2_2:55269457-55269476 | None:intergenic | 40.0% |
| TGTGTTTGGATGAAGGGTTT+AGG | - | chr2_2:55269591-55269610 | Msa0258720:intron | 40.0% | |
| GTGTTTGGATGAAGGGTTTA+GGG | - | chr2_2:55269592-55269611 | Msa0258720:intron | 40.0% | |
| TGTTTGGATGAAGGGTTTAG+GGG | - | chr2_2:55269593-55269612 | Msa0258720:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr2_2:55269783-55269802 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr2_2:55269787-55269806 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | + | chr2_2:55269793-55269812 | None:intergenic | 40.0% | |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | + | chr2_2:55269794-55269813 | None:intergenic | 40.0% |
| TCAATCCAAACACACCCTAA+AGG | - | chr2_2:55269793-55269812 | Msa0258720:intron | 40.0% | |
| ! | TGGGTTTTTCCGAATAACAC+CGG | - | chr2_2:55269869-55269888 | Msa0258720:intron | 40.0% |
| !! | TATATGTGGCCGGTGTTATT+CGG | + | chr2_2:55269881-55269900 | None:intergenic | 40.0% |
| ! | TCTCTATTTTATGCGGGACT+TGG | - | chr2_2:55269917-55269936 | Msa0258720:intron | 40.0% |
| ! | CTCTATTTTATGCGGGACTT+GGG | - | chr2_2:55269918-55269937 | Msa0258720:intron | 40.0% |
| ! | TTTTGCAGATGCATATGTGG+GGG | - | chr2_2:55270072-55270091 | Msa0258720:intron | 40.0% |
| AAAGGACCAGACTCACTTAA+AGG | - | chr2_2:55270113-55270132 | Msa0258720:intron | 40.0% | |
| TGTGTTCCTTTAAGTGAGTC+TGG | + | chr2_2:55270122-55270141 | None:intergenic | 40.0% | |
| CCATGTTATTGTTGTGCTCA+CGG | - | chr2_2:55270164-55270183 | Msa0258720:intron | 40.0% | |
| TCCAAGAGCAAAACCATTGA+AGG | - | chr2_2:55270208-55270227 | Msa0258720:CDS | 40.0% | |
| !! | TCCTTCAATGGTTTTGCTCT+TGG | + | chr2_2:55270212-55270231 | None:intergenic | 40.0% |
| !! | AAGTTTTGGTATTGCACCTG+TGG | - | chr2_2:55270353-55270372 | Msa0258720:CDS | 40.0% |
| CATGTTAGATCCTTCGGAAA+AGG | - | chr2_2:55270410-55270429 | Msa0258720:CDS | 40.0% | |
| TCTTCAAAGCCATCAAGAGA+AGG | + | chr2_2:55270449-55270468 | None:intergenic | 40.0% | |
| GAGAAAGAATGCAGCAATAC+TGG | - | chr2_2:55270470-55270489 | Msa0258720:CDS | 40.0% | |
| GCTCATGCATGATCATGATA+TGG | - | chr2_2:55270512-55270531 | Msa0258720:CDS | 40.0% | |
| GATGAGAGTGAGGAATTAGG+TGG | + | chr2_2:55267350-55267369 | None:intergenic | 45.0% | |
| TGAAGGAGATGATGAGAGTG+AGG | + | chr2_2:55267360-55267379 | None:intergenic | 45.0% | |
| GGCTTAACTCCACTAGAGAT+TGG | + | chr2_2:55267434-55267453 | None:intergenic | 45.0% | |
| TAGTGGAGTTAAGCCCTTTG+AGG | - | chr2_2:55267439-55267458 | Msa0258720:CDS | 45.0% | |
| CACATTGGATTGCCTAACGT+AGG | - | chr2_2:55267533-55267552 | Msa0258720:CDS | 45.0% | |
| ACAAGAATCTGAGCAGGAGT+TGG | + | chr2_2:55267674-55267693 | None:intergenic | 45.0% | |
| ACTCCTGCTCAGATTCTTGT+TGG | - | chr2_2:55267674-55267693 | Msa0258720:CDS | 45.0% | |
| ATGGAGCAAGCAAACTGCAT+AGG | + | chr2_2:55267701-55267720 | None:intergenic | 45.0% | |
| AAAAGTTGGGATACCCTAGC+GGG | + | chr2_2:55268942-55268961 | None:intergenic | 45.0% | |
| GTTTGGATGAAGGGTTTAGG+GGG | - | chr2_2:55269594-55269613 | Msa0258720:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr2_2:55269782-55269801 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr2_2:55269784-55269803 | None:intergenic | 45.0% | |
| TCTCTATTCCACGTGGGATT+TGG | - | chr2_2:55269849-55269868 | Msa0258720:intron | 45.0% | |
| CTCTATTCCACGTGGGATTT+GGG | - | chr2_2:55269850-55269869 | Msa0258720:intron | 45.0% | |
| CCGTGAGCACAACAATAACA+TGG | + | chr2_2:55270167-55270186 | None:intergenic | 45.0% | |
| AGCCATCAAGAGAAGGAAGT+GGG | + | chr2_2:55270442-55270461 | None:intergenic | 45.0% | |
| AAGCCATCAAGAGAAGGAAG+TGG | + | chr2_2:55270443-55270462 | None:intergenic | 45.0% | |
| !!! | TAATAATTAAATTTTATACA+CGG | + | chr2_2:55268581-55268600 | None:intergenic | 5.0% |
| ATCCCATGGTCGTCCTCAAA+GGG | + | chr2_2:55267455-55267474 | None:intergenic | 50.0% | |
| GAAGGTGGAACATGTGACTG+TGG | - | chr2_2:55267505-55267524 | Msa0258720:CDS | 50.0% | |
| ! | GTGACTGTGGCTTTGCACAT+TGG | - | chr2_2:55267518-55267537 | Msa0258720:CDS | 50.0% |
| GGTCCAACAAGAATCTGAGC+AGG | + | chr2_2:55267680-55267699 | None:intergenic | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+GGG | + | chr2_2:55269778-55269797 | None:intergenic | 50.0% | |
| GGAAAAACCCAAATCCCACG+TGG | + | chr2_2:55269860-55269879 | None:intergenic | 50.0% | |
| ! | GGGGGCATGGATCAGAATTT+AGG | - | chr2_2:55270090-55270109 | Msa0258720:intron | 50.0% |
| CACAACCAGCAGCAATGCTA+AGG | - | chr2_2:55270138-55270157 | Msa0258720:intron | 50.0% | |
| ! | TGGGGAATGACCTTTTCCGA+AGG | + | chr2_2:55270423-55270442 | None:intergenic | 50.0% |
| TCCCCACTTCCTTCTCTTGA+TGG | - | chr2_2:55270437-55270456 | Msa0258720:CDS | 50.0% | |
| GCCATCAAGAGAAGGAAGTG+GGG | + | chr2_2:55270441-55270460 | None:intergenic | 50.0% | |
| ! | AAGCCCTTTGAGGACGACCA+TGG | - | chr2_2:55267449-55267468 | Msa0258720:CDS | 55.0% |
| ! | AGCCCTTTGAGGACGACCAT+GGG | - | chr2_2:55267450-55267469 | Msa0258720:CDS | 55.0% |
| CATCCCATGGTCGTCCTCAA+AGG | + | chr2_2:55267456-55267475 | None:intergenic | 55.0% | |
| GGACGACCATGGGATGCAAA+AGG | - | chr2_2:55267460-55267479 | Msa0258720:CDS | 55.0% | |
| GGATGAAGGGTTTAGGGGGA+TGG | - | chr2_2:55269598-55269617 | Msa0258720:intron | 55.0% | |
| GATTGAGGGTTTAGGAGGGG+AGG | + | chr2_2:55269779-55269798 | None:intergenic | 55.0% | |
| CAGATGCATATGTGGGGGCA+TGG | - | chr2_2:55270077-55270096 | Msa0258720:intron | 55.0% | |
| TTGTTGTCCCGCTCCCGCTA+GGG | - | chr2_2:55268926-55268945 | Msa0258720:intron | 60.0% | |
| TTGGGATACCCTAGCGGGAG+CGG | + | chr2_2:55268937-55268956 | None:intergenic | 60.0% | |
| GGCAGCCTTAGCATTGCTGC+TGG | + | chr2_2:55270146-55270165 | None:intergenic | 60.0% | |
| ! | CTTGTTGTCCCGCTCCCGCT+AGG | - | chr2_2:55268925-55268944 | Msa0258720:intron | 65.0% |
| TGGGATACCCTAGCGGGAGC+GGG | + | chr2_2:55268936-55268955 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 55267214 | 55270728 | 55267214 | ID=Msa0258720;Name=Msa0258720 |
| chr2_2 | mRNA | 55267214 | 55270728 | 55267214 | ID=Msa0258720-mRNA-1;Parent=Msa0258720;Name=Msa0258720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|205|310 |
| chr2_2 | exon | 55267214 | 55267862 | 55267214 | ID=Msa0258720-mRNA-1:exon:16711;Parent=Msa0258720-mRNA-1 |
| chr2_2 | exon | 55270185 | 55270728 | 55270185 | ID=Msa0258720-mRNA-1:exon:16710;Parent=Msa0258720-mRNA-1 |
| chr2_2 | five_prime_UTR | 55270674 | 55270728 | 55270674 | ID=Msa0258720-mRNA-1:five_prime_utr;Parent=Msa0258720-mRNA-1 |
| chr2_2 | CDS | 55270185 | 55270673 | 55270185 | ID=Msa0258720-mRNA-1:cds;Parent=Msa0258720-mRNA-1 |
| chr2_2 | CDS | 55267419 | 55267862 | 55267419 | ID=Msa0258720-mRNA-1:cds;Parent=Msa0258720-mRNA-1 |
| chr2_2 | three_prime_UTR | 55267214 | 55267418 | 55267214 | ID=Msa0258720-mRNA-1:three_prime_utr;Parent=Msa0258720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
