AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0258720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258720 MtrunA17_Chr2g0321291 96.785 311 7 2 1 310 1 309 0.0 623
Msa0258720 MtrunA17_Chr4g0026521 66.124 307 82 6 6 308 5 293 4.44e-128 367
Msa0258720 MtrunA17_Chr7g0258011 62.195 246 80 4 73 306 103 347 5.71e-109 320
Msa0258720 MtrunA17_Chr1g0173841 60.643 249 75 5 78 306 141 386 7.14e-106 314
Msa0258720 MtrunA17_Chr8g0352011 64.444 225 63 3 82 296 110 327 1.04e-103 306
Msa0258720 MtrunA17_Chr2g0328921 63.636 220 68 3 69 282 73 286 1.70e-101 300
Msa0258720 MtrunA17_Chr5g0422571 63.679 212 62 4 74 284 55 252 1.47e-97 289
Msa0258720 MtrunA17_Chr4g0053341 57.724 246 87 2 46 290 1 230 5.23e-95 280
Msa0258720 MtrunA17_Chr1g0198651 77.707 157 32 1 131 284 99 255 5.52e-94 280
Msa0258720 MtrunA17_Chr1g0200421 39.873 158 81 7 141 289 245 397 8.81e-27 109
Msa0258720 MtrunA17_Chr2g0320341 35.220 159 95 4 134 285 231 388 1.19e-22 97.1
Msa0258720 MtrunA17_Chr8g0382121 38.571 140 81 4 149 284 127 265 4.55e-21 91.3
Msa0258720 MtrunA17_Chr4g0029521 38.129 139 77 4 141 278 61 191 4.09e-20 90.5
Msa0258720 MtrunA17_Chr2g0326381 35.616 146 85 4 134 278 48 185 1.31e-19 88.6
Msa0258720 MtrunA17_Chr1g0151351 36.170 141 81 4 139 278 62 194 5.27e-19 87.0
Msa0258720 MtrunA17_Chr1g0181381 34.247 146 87 4 134 278 54 191 5.69e-19 87.0
Msa0258720 MtrunA17_Chr7g0263941 32.973 185 104 7 134 310 50 222 5.85e-19 86.7
Msa0258720 MtrunA17_Chr3g0123941 37.037 162 91 7 149 306 139 293 9.34e-19 85.1
Msa0258720 MtrunA17_Chr1g0185121 35.374 147 84 5 134 278 56 193 1.22e-18 85.9
Msa0258720 MtrunA17_Chr2g0324991 35.211 142 82 5 134 273 8 141 3.20e-18 80.1
Msa0258720 MtrunA17_Chr1g0162971 36.429 140 77 5 141 278 64 193 3.22e-18 84.7
Msa0258720 MtrunA17_Chr1g0191991 36.054 147 82 6 134 278 79 215 3.52e-18 84.7
Msa0258720 MtrunA17_Chr1g0210821 34.694 147 84 5 134 278 60 196 3.59e-18 84.7
Msa0258720 MtrunA17_Chr7g0268961 35.252 139 80 4 141 278 45 174 3.70e-18 84.7
Msa0258720 MtrunA17_Chr1g0163001 34.694 147 84 5 134 278 59 195 5.07e-18 84.3
Msa0258720 MtrunA17_Chr1g0199101 34.694 147 84 5 134 278 63 199 5.09e-18 84.3
Msa0258720 MtrunA17_Chr8g0342421 35.714 140 78 6 141 278 85 214 6.55e-18 84.0
Msa0258720 MtrunA17_Chr8g0373541 33.742 163 94 6 118 278 35 185 1.08e-17 83.2
Msa0258720 MtrunA17_Chr2g0330171 34.694 147 84 6 134 278 62 198 1.75e-17 82.4
Msa0258720 MtrunA17_Chr4g0040571 32.877 146 88 4 134 278 55 191 1.45e-16 80.1
Msa0258720 MtrunA17_Chr3g0141431 33.571 140 83 4 139 276 43 174 2.42e-16 79.0
Msa0258720 MtrunA17_Chr6g0479921 30.496 141 82 5 139 274 50 179 6.25e-12 65.9
Msa0258720 MtrunA17_Chr8g0375521 30.216 139 86 5 139 274 48 178 6.96e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258720 AT1G08290.1 56.845 336 100 11 8 300 3 336 2.25e-117 342
Msa0258720 AT1G51220.1 51.757 313 107 6 19 306 43 336 1.47e-103 306
Msa0258720 AT3G20880.1 63.158 228 67 2 84 294 176 403 3.94e-101 303
Msa0258720 AT3G57670.1 59.184 245 67 4 84 296 122 365 1.38e-100 300
Msa0258720 AT1G13290.1 65.347 202 52 4 84 283 54 239 2.75e-93 279
Msa0258720 AT1G34790.1 60.090 223 80 3 84 303 83 299 6.50e-93 278
Msa0258720 AT1G34370.3 38.608 158 85 5 141 289 28 182 7.84e-28 109
Msa0258720 AT1G34370.2 38.608 158 85 5 141 289 238 392 2.82e-27 111
Msa0258720 AT1G34370.1 38.608 158 85 5 141 289 238 392 2.82e-27 111
Msa0258720 AT5G22890.1 39.735 151 83 5 141 284 211 360 1.79e-24 102
Msa0258720 AT5G03150.1 36.691 139 79 4 141 278 76 206 4.48e-20 90.9
Msa0258720 AT1G55110.3 35.915 142 80 5 139 278 84 216 1.17e-18 86.3
Msa0258720 AT1G55110.1 35.915 142 80 5 139 278 84 216 1.17e-18 86.3
Msa0258720 AT1G55110.2 35.915 142 80 5 139 278 84 216 1.17e-18 86.3
Msa0258720 AT5G66730.1 35.915 142 79 5 139 278 53 184 1.78e-18 85.9
Msa0258720 AT5G60470.1 37.410 139 78 4 141 278 58 188 2.05e-18 85.5
Msa0258720 AT5G60470.3 37.410 139 78 4 141 278 63 193 2.14e-18 85.5
Msa0258720 AT5G60470.2 37.410 139 78 4 141 278 67 197 2.18e-18 85.5
Msa0258720 AT2G02080.1 35.461 141 81 4 139 278 75 206 2.30e-18 85.9
Msa0258720 AT2G02080.4 35.461 141 81 4 139 278 75 206 2.30e-18 85.9
Msa0258720 AT2G02080.5 35.461 141 81 4 139 278 75 206 2.30e-18 85.9
Msa0258720 AT2G02080.3 35.461 141 81 4 139 278 75 206 2.30e-18 85.9
Msa0258720 AT4G02670.1 35.616 146 85 4 134 278 69 206 2.58e-18 85.1
Msa0258720 AT4G02670.2 35.616 146 85 4 134 278 71 208 2.74e-18 85.1
Msa0258720 AT3G45260.2 36.691 139 79 4 141 278 62 192 3.69e-18 84.7
Msa0258720 AT3G45260.1 36.691 139 79 4 141 278 62 192 3.69e-18 84.7
Msa0258720 AT2G02070.2 34.932 146 85 4 134 278 68 204 4.63e-18 85.1
Msa0258720 AT2G02070.1 34.932 146 85 4 134 278 68 204 4.63e-18 85.1
Msa0258720 AT2G02080.6 36.567 134 75 4 146 278 5 129 6.27e-18 84.3
Msa0258720 AT2G02080.2 36.567 134 75 4 146 278 5 129 6.27e-18 84.3
Msa0258720 AT1G14580.1 34.247 146 86 4 134 278 69 205 7.74e-18 84.0
Msa0258720 AT1G14580.2 34.247 146 86 4 134 278 69 205 7.74e-18 84.0
Msa0258720 AT1G14580.3 34.247 146 86 4 134 278 83 219 7.97e-18 84.0
Msa0258720 AT5G44160.1 33.813 139 82 4 141 278 60 189 2.01e-17 82.8
Msa0258720 AT1G03840.2 34.932 146 85 5 134 278 55 191 2.12e-17 82.8
Msa0258720 AT1G03840.1 34.932 146 85 5 134 278 57 193 2.13e-17 82.8
Msa0258720 AT5G44160.2 32.877 146 88 4 134 278 14 150 2.28e-17 82.4
Msa0258720 AT3G13810.5 34.247 146 87 4 134 278 81 218 3.47e-17 82.4
Msa0258720 AT3G13810.4 34.247 146 87 4 134 278 86 223 3.73e-17 82.0
Msa0258720 AT3G13810.1 34.247 146 87 4 134 278 86 223 3.73e-17 82.0
Msa0258720 AT3G50700.1 34.247 146 86 4 134 278 50 186 3.96e-17 82.0
Msa0258720 AT3G13810.2 34.247 146 87 4 134 278 87 224 4.07e-17 82.0
Msa0258720 AT3G13810.3 34.247 146 87 4 134 278 73 210 4.11e-17 82.0
Msa0258720 AT3G13810.6 34.247 146 87 4 134 278 67 204 4.22e-17 82.0
Msa0258720 AT1G68130.1 31.655 139 84 5 139 274 62 192 1.63e-12 68.2
Msa0258720 AT1G25250.1 29.710 138 89 4 139 274 31 162 2.39e-12 67.4
Msa0258720 AT1G25250.3 30.216 139 87 5 139 274 54 185 3.19e-12 67.0
Msa0258720 AT2G01940.1 30.216 139 86 5 139 274 65 195 5.67e-11 63.5

Find 60 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAAAGCATTTGCTGTTAA+AGG 0.122625 2_2:-55267621 Msa0258720:CDS
TTGAGCCATTCAATGAAATT+TGG 0.134972 2_2:+55270597 None:intergenic
TCCCCACTTCCTTCTCTTGA+TGG 0.185051 2_2:-55267483 Msa0258720:CDS
TGAATATATTTCACAAATCT+AGG 0.278468 2_2:-55270699 Msa0258720:five_prime_UTR
AGTTTGTGTTGATGAGTTAA+AGG 0.287140 2_2:+55270537 None:intergenic
TGAGCCATTCAATGAAATTT+GGG 0.289191 2_2:+55270598 None:intergenic
GATGATGAGAGTGAGGAATT+AGG 0.300962 2_2:+55270570 None:intergenic
AAAGGACCAGACTCACTTAA+AGG 0.304674 2_2:-55267807 Msa0258720:CDS
GAGAAAGAATGCAGCAATAC+TGG 0.341279 2_2:-55267450 Msa0258720:CDS
AAACCCCAAATTTCATTGAA+TGG 0.361241 2_2:-55270602 Msa0258720:CDS
CATATTGTTGTATCTATTGA+AGG 0.375727 2_2:+55270188 None:intergenic
TGAACATGATGAGAAGAATA+AGG 0.376871 2_2:-55270352 Msa0258720:CDS
CATTTGCTGTTAAAGGTGAT+TGG 0.376909 2_2:-55267614 Msa0258720:CDS
GCTCATGCATGATCATGATA+TGG 0.396038 2_2:-55267408 Msa0258720:exon
ATTGAAGGTCTTACTGCATA+TGG 0.402051 2_2:+55270203 None:intergenic
TTAAGGAGGAGAGAAGGTTT+TGG 0.404432 2_2:-55270275 Msa0258720:CDS
TGTGTTCCTTTAAGTGAGTC+TGG 0.407901 2_2:+55267801 None:intergenic
AAAGATCATGTTAGATCCTT+CGG 0.408333 2_2:-55267516 Msa0258720:CDS
ACTCCTGCTCAGATTCTTGT+TGG 0.408478 2_2:-55270246 Msa0258720:CDS
CAATGAAATTTGGGGTTTGA+AGG 0.444233 2_2:+55270607 None:intergenic
ATCTCTCTCTAGAATTAAGA+TGG 0.445216 2_2:-55270670 Msa0258720:exon
TCCAAGAGCAAAACCATTGA+AGG 0.445743 2_2:-55267712 Msa0258720:CDS
TAGTGGAGTTAAGCCCTTTG+AGG 0.446748 2_2:-55270481 Msa0258720:CDS
CTAGAATTAAGATGGGTTTG+AGG 0.448542 2_2:-55270662 Msa0258720:exon
CATCCCATGGTCGTCCTCAA+AGG 0.449561 2_2:+55270467 None:intergenic
TAGAATTAAGATGGGTTTGA+GGG 0.453608 2_2:-55270661 Msa0258720:exon
CCATGTTATTGTTGTGCTCA+CGG 0.477382 2_2:-55267756 Msa0258720:CDS
CATGTTAGATCCTTCGGAAA+AGG 0.486223 2_2:-55267510 Msa0258720:CDS
GTGTTTAAAATCTGAACCAC+AGG 0.489686 2_2:+55267551 None:intergenic
AGAGTTCTGAAATCCTTCAA+TGG 0.491722 2_2:+55267699 None:intergenic
GGCTTAACTCCACTAGAGAT+TGG 0.493614 2_2:+55270489 None:intergenic
GGCAGCCTTAGCATTGCTGC+TGG 0.503446 2_2:+55267777 None:intergenic
TGAAGTAAAAGAAGAGAAGG+TGG 0.512589 2_2:-55270430 Msa0258720:CDS
GAATATATTTCACAAATCTA+GGG 0.517022 2_2:-55270698 Msa0258720:five_prime_UTR
ATCCCATGGTCGTCCTCAAA+GGG 0.519930 2_2:+55270468 None:intergenic
GATTTGTGCTGTTGAAATTG+TGG 0.524507 2_2:-55267328 Msa0258720:three_prime_UTR
TGATGAGTTAAAGGCGATGA+AGG 0.525454 2_2:+55270546 None:intergenic
TGAAGGAGATGATGAGAGTG+AGG 0.539316 2_2:+55270563 None:intergenic
CACAACCAGCAGCAATGCTA+AGG 0.552239 2_2:-55267782 Msa0258720:CDS
GATGAGAGTGAGGAATTAGG+TGG 0.553504 2_2:+55270573 None:intergenic
ACTCATTACAAAAGAAAGCA+TGG 0.557148 2_2:-55267672 Msa0258720:CDS
GGACGACCATGGGATGCAAA+AGG 0.560614 2_2:-55270460 Msa0258720:CDS
TCAGATTCACATCCTACGTT+AGG 0.564487 2_2:+55270375 None:intergenic
AGCCATCAAGAGAAGGAAGT+GGG 0.568332 2_2:+55267481 None:intergenic
GTGACTGTGGCTTTGCACAT+TGG 0.568567 2_2:-55270402 Msa0258720:CDS
ACAAGAATCTGAGCAGGAGT+TGG 0.574558 2_2:+55270249 None:intergenic
GGTCCAACAAGAATCTGAGC+AGG 0.582655 2_2:+55270243 None:intergenic
AAGCCCTTTGAGGACGACCA+TGG 0.585506 2_2:-55270471 Msa0258720:CDS
TCTTCAAAGCCATCAAGAGA+AGG 0.586437 2_2:+55267474 None:intergenic
AGCCCTTTGAGGACGACCAT+GGG 0.589212 2_2:-55270470 Msa0258720:CDS
AAGCCATCAAGAGAAGGAAG+TGG 0.595192 2_2:+55267480 None:intergenic
CAATAGATACAACAATATGC+AGG 0.595484 2_2:-55270184 Msa0258720:intron
TCTCTCTCTAGAATTAAGAT+GGG 0.611781 2_2:-55270669 Msa0258720:exon
ATGGAGCAAGCAAACTGCAT+AGG 0.613273 2_2:+55270222 None:intergenic
GAGCCATTCAATGAAATTTG+GGG 0.617863 2_2:+55270599 None:intergenic
CCGTGAGCACAACAATAACA+TGG 0.626600 2_2:+55267756 None:intergenic
CATGGATCAGAATTTAGGAA+AGG 0.639859 2_2:-55267825 Msa0258720:CDS
CACATTGGATTGCCTAACGT+AGG 0.667692 2_2:-55270387 Msa0258720:CDS
GCCATCAAGAGAAGGAAGTG+GGG 0.668776 2_2:+55267482 None:intergenic
GAAGGTGGAACATGTGACTG+TGG 0.730758 2_2:-55270415 Msa0258720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTAAATTTTATACAC+GGG + chr2_2:55268580-55268599 None:intergenic 10.0%
!! TTAGTCATATTAAATTATAT+TGG + chr2_2:55268760-55268779 None:intergenic 10.0%
!! AATATAATTTAATATGACTA+AGG - chr2_2:55268759-55268778 Msa0258720:intron 10.0%
!! AATAGTTCAATTAATTACAT+TGG - chr2_2:55268289-55268308 Msa0258720:intron 15.0%
!!! ATAAATTTGAAATAAAGTGA+CGG + chr2_2:55268459-55268478 None:intergenic 15.0%
!! ACTTACAAAATAAATATATG+TGG + chr2_2:55269895-55269914 None:intergenic 15.0%
!!! TTCTAATTTCATAGTTTTTT+AGG + chr2_2:55270001-55270020 None:intergenic 15.0%
!! TGAATATATTTCACAAATCT+AGG - chr2_2:55267221-55267240 Msa0258720:three_prime_UTR 20.0%
!! GAATATATTTCACAAATCTA+GGG - chr2_2:55267222-55267241 Msa0258720:three_prime_UTR 20.0%
!!! TCTTATCAAGAATTTTTCAA+GGG - chr2_2:55267932-55267951 Msa0258720:intron 20.0%
!! AATTTGTATTTAGTAGTCTT+AGG - chr2_2:55267957-55267976 Msa0258720:intron 20.0%
!! ACTATTGAAGTGATAAAATA+TGG + chr2_2:55268275-55268294 None:intergenic 20.0%
!! TAAGTATAATTATGTGACTT+TGG + chr2_2:55268647-55268666 None:intergenic 20.0%
!!! TCACATTTTTTAAAGTGTAA+AGG + chr2_2:55268892-55268911 None:intergenic 20.0%
!!! TAATTTGTTCTTATGTTTCA+AGG - chr2_2:55269248-55269267 Msa0258720:intron 20.0%
!!! TAGATCAAACACTTTTTTAT+AGG - chr2_2:55269373-55269392 Msa0258720:intron 20.0%
!!! TTTGGTTTTTCTTATGTAAT+TGG + chr2_2:55269439-55269458 None:intergenic 20.0%
!! ATAAAGAGTAAAATCCTTTA+GGG + chr2_2:55269810-55269829 None:intergenic 20.0%
!! AATAAAGAGTAAAATCCTTT+AGG + chr2_2:55269811-55269830 None:intergenic 20.0%
!!! TAAGTTATCTCTATTTTATG+CGG - chr2_2:55269910-55269929 Msa0258720:intron 20.0%
!! ACTATGAAATTAGAATTGAA+TGG - chr2_2:55270006-55270025 Msa0258720:intron 20.0%
! TAAAAACTGGAAAGTTTCTT+GGG + chr2_2:55267411-55267430 None:intergenic 25.0%
!!! TTTTGAAGTAAAAGAAGAGA+AGG - chr2_2:55267487-55267506 Msa0258720:CDS 25.0%
!!! TAAGGTTTTTGATTGTGTTA+AGG - chr2_2:55267586-55267605 Msa0258720:CDS 25.0%
! CATATTGTTGTATCTATTGA+AGG + chr2_2:55267735-55267754 None:intergenic 25.0%
!! ATTTTTCCCTAAAAATCGAA+GGG + chr2_2:55267873-55267892 None:intergenic 25.0%
!! TATTTTTCCCTAAAAATCGA+AGG + chr2_2:55267874-55267893 None:intergenic 25.0%
!! GTCTTATCAAGAATTTTTCA+AGG - chr2_2:55267931-55267950 Msa0258720:intron 25.0%
! CAAAAGAAAAGAAAACCTAA+GGG + chr2_2:55267993-55268012 None:intergenic 25.0%
! TCAAAAGAAAAGAAAACCTA+AGG + chr2_2:55267994-55268013 None:intergenic 25.0%
! TGAAAGCAAATTTCTCTTAT+AGG - chr2_2:55268011-55268030 Msa0258720:intron 25.0%
! GAAAGCAAATTTCTCTTATA+GGG - chr2_2:55268012-55268031 Msa0258720:intron 25.0%
! TTCAAATTAGATAAGAGAGA+CGG - chr2_2:55268151-55268170 Msa0258720:intron 25.0%
! TAAGAAGTTATGTGTATGAA+TGG + chr2_2:55268251-55268270 None:intergenic 25.0%
! AAATAGCATAGTCTATAGTT+GGG + chr2_2:55268358-55268377 None:intergenic 25.0%
! TAAATAGCATAGTCTATAGT+TGG + chr2_2:55268359-55268378 None:intergenic 25.0%
!!! TTTTTTTGACAAAACAGCAT+AGG + chr2_2:55268521-55268540 None:intergenic 25.0%
! AGGTGTTTAACATTATGATT+AGG - chr2_2:55268779-55268798 Msa0258720:intron 25.0%
!! AATGATTGTTTTCTTCTTGA+TGG + chr2_2:55268818-55268837 None:intergenic 25.0%
! GAAAGCAAAAATAAATGAGA+GGG + chr2_2:55268870-55268889 None:intergenic 25.0%
! AAAAATGTGAGCAAAATGAA+TGG - chr2_2:55268902-55268921 Msa0258720:intron 25.0%
!! AAGATATGGTCTTTTACTAT+AGG + chr2_2:55268989-55269008 None:intergenic 25.0%
! TATTGCATACTCTTTGATAT+GGG + chr2_2:55269032-55269051 None:intergenic 25.0%
! ATATTGCATACTCTTTGATA+TGG + chr2_2:55269033-55269052 None:intergenic 25.0%
!! ATTCTTCATAGATTCTAAGA+AGG + chr2_2:55269077-55269096 None:intergenic 25.0%
! AGTGTTTGATCTAATTCATA+AGG + chr2_2:55269366-55269385 None:intergenic 25.0%
!!! ATTGATGATGATGATGATAA+TGG - chr2_2:55269477-55269496 Msa0258720:intron 25.0%
!! AACACATCCTTAATTTTGTA+AGG + chr2_2:55269577-55269596 None:intergenic 25.0%
! TACAAAATTAAGGATGTGTT+TGG - chr2_2:55269577-55269596 Msa0258720:intron 25.0%
! ACAAAATAAATATATGTGGC+CGG + chr2_2:55269891-55269910 None:intergenic 25.0%
!! AAGTTATCTCTATTTTATGC+GGG - chr2_2:55269911-55269930 Msa0258720:intron 25.0%
!! AATATATGGCTAGTGTTATT+TGG + chr2_2:55269949-55269968 None:intergenic 25.0%
!! AGAAAAATTGTGGAAAGTTT+TGG - chr2_2:55270339-55270358 Msa0258720:CDS 25.0%
!! ATCTCTCTCTAGAATTAAGA+TGG - chr2_2:55267250-55267269 Msa0258720:three_prime_UTR 30.0%
!! TCTCTCTCTAGAATTAAGAT+GGG - chr2_2:55267251-55267270 Msa0258720:three_prime_UTR 30.0%
! TAGAATTAAGATGGGTTTGA+GGG - chr2_2:55267259-55267278 Msa0258720:three_prime_UTR 30.0%
AAACCCCAAATTTCATTGAA+TGG - chr2_2:55267318-55267337 Msa0258720:three_prime_UTR 30.0%
TGAGCCATTCAATGAAATTT+GGG + chr2_2:55267325-55267344 None:intergenic 30.0%
TTGAGCCATTCAATGAAATT+TGG + chr2_2:55267326-55267345 None:intergenic 30.0%
! AGTTTGTGTTGATGAGTTAA+AGG + chr2_2:55267386-55267405 None:intergenic 30.0%
GTAAAAACTGGAAAGTTTCT+TGG + chr2_2:55267412-55267431 None:intergenic 30.0%
TGAACATGATGAGAAGAATA+AGG - chr2_2:55267568-55267587 Msa0258720:CDS 30.0%
CAATAGATACAACAATATGC+AGG - chr2_2:55267736-55267755 Msa0258720:CDS 30.0%
! TTCTTAACCCTTCGATTTTT+AGG - chr2_2:55267801-55267820 Msa0258720:CDS 30.0%
! TCTTAACCCTTCGATTTTTA+GGG - chr2_2:55267802-55267821 Msa0258720:CDS 30.0%
AATTTCCCCTAAAAATCGAA+GGG + chr2_2:55267811-55267830 None:intergenic 30.0%
AAATTTCCCCTAAAAATCGA+AGG + chr2_2:55267812-55267831 None:intergenic 30.0%
TAAAAATCGAAGGGTTAAGA+AGG + chr2_2:55267802-55267821 None:intergenic 30.0%
! TTCTTAACCCTTCGATTTTT+AGG - chr2_2:55267801-55267820 Msa0258720:CDS 30.0%
! TCTTAACCCTTCGATTTTTA+GGG - chr2_2:55267802-55267821 Msa0258720:CDS 30.0%
TTAGGTCAATAATTTCCCTT+AGG - chr2_2:55267975-55267994 Msa0258720:intron 30.0%
ATAGTAACGAAGGATATAGA+GGG + chr2_2:55268606-55268625 None:intergenic 30.0%
ATTTGTCATCATAGTAACGA+AGG + chr2_2:55268616-55268635 None:intergenic 30.0%
GGAAAGCAAAAATAAATGAG+AGG + chr2_2:55268871-55268890 None:intergenic 30.0%
! GTATCCCAACTTTTAGTAAA+AGG - chr2_2:55268948-55268967 Msa0258720:intron 30.0%
! AGAGCCTTTTACTAAAAGTT+GGG + chr2_2:55268955-55268974 None:intergenic 30.0%
! AAGAGCCTTTTACTAAAAGT+TGG + chr2_2:55268956-55268975 None:intergenic 30.0%
! AATACAAAGGCATGAAGATA+TGG + chr2_2:55269003-55269022 None:intergenic 30.0%
ATATGGGAAAGGAAATACAA+AGG + chr2_2:55269016-55269035 None:intergenic 30.0%
AATTCTAGCACTCCTTATTA+TGG - chr2_2:55269137-55269156 Msa0258720:intron 30.0%
ATTCTAGCACTCCTTATTAT+GGG - chr2_2:55269138-55269157 Msa0258720:intron 30.0%
TAAGTTGCTTGATGTATACT+AGG - chr2_2:55269215-55269234 Msa0258720:intron 30.0%
AAGTTGCTTGATGTATACTA+GGG - chr2_2:55269216-55269235 Msa0258720:intron 30.0%
CTTCTTTCTTGTCGATAAAA+AGG - chr2_2:55269273-55269292 Msa0258720:intron 30.0%
TATCATCATCATCATCAATG+TGG + chr2_2:55269476-55269495 None:intergenic 30.0%
TCGTCATCCTTACAAAATTA+AGG - chr2_2:55269567-55269586 Msa0258720:intron 30.0%
! TATTTTATCTCTATTCCACG+TGG - chr2_2:55269842-55269861 Msa0258720:intron 30.0%
! ATTTTATCTCTATTCCACGT+GGG - chr2_2:55269843-55269862 Msa0258720:intron 30.0%
GTTGCGATCAAGAAAATATA+TGG + chr2_2:55269963-55269982 None:intergenic 30.0%
! GCTTTCTTTTGTAATGAGTT+TGG + chr2_2:55270247-55270266 None:intergenic 30.0%
ACTCATTACAAAAGAAAGCA+TGG - chr2_2:55270248-55270267 Msa0258720:CDS 30.0%
! GAACATTTTCTGCAGATAAA+TGG + chr2_2:55270281-55270300 None:intergenic 30.0%
!! TCTAAAGCATTTGCTGTTAA+AGG - chr2_2:55270299-55270318 Msa0258720:CDS 30.0%
AGAACTCATGAGAAAAATTG+TGG - chr2_2:55270329-55270348 Msa0258720:CDS 30.0%
AAAGATCATGTTAGATCCTT+CGG - chr2_2:55270404-55270423 Msa0258720:CDS 30.0%
! CTAGAATTAAGATGGGTTTG+AGG - chr2_2:55267258-55267277 Msa0258720:three_prime_UTR 35.0%
! CAATGAAATTTGGGGTTTGA+AGG + chr2_2:55267316-55267335 None:intergenic 35.0%
GAGCCATTCAATGAAATTTG+GGG + chr2_2:55267324-55267343 None:intergenic 35.0%
CACTAGAGATTGGTAAAAAC+TGG + chr2_2:55267424-55267443 None:intergenic 35.0%
! CAGTTTTTACCAATCTCTAG+TGG - chr2_2:55267422-55267441 Msa0258720:CDS 35.0%
TGAAGTAAAAGAAGAGAAGG+TGG - chr2_2:55267490-55267509 Msa0258720:CDS 35.0%
GAATTGAAGAAAAACGTGCA+TGG - chr2_2:55267614-55267633 Msa0258720:CDS 35.0%
!!! CGTGCATGGTTTTTGTTTTA+AGG - chr2_2:55267628-55267647 Msa0258720:CDS 35.0%
!!! GCATGGTTTTTGTTTTAAGG+AGG - chr2_2:55267631-55267650 Msa0258720:CDS 35.0%
!!! TTTGTTTTAAGGAGGAGAGA+AGG - chr2_2:55267639-55267658 Msa0258720:CDS 35.0%
ATTGAAGGTCTTACTGCATA+TGG + chr2_2:55267720-55267739 None:intergenic 35.0%
AGATACAACAATATGCAGGT+TGG - chr2_2:55267740-55267759 Msa0258720:CDS 35.0%
!! ACAATATGCAGGTTGGTAAT+TGG - chr2_2:55267747-55267766 Msa0258720:CDS 35.0%
!! CTTAACCCTTCGATTTTTAG+GGG - chr2_2:55267803-55267822 Msa0258720:CDS 35.0%
TTGCGTATGAAGTATGAACT+AGG + chr2_2:55268217-55268236 None:intergenic 35.0%
! TTTTGACAAAACAGCATAGG+AGG + chr2_2:55268518-55268537 None:intergenic 35.0%
TCATGTTAAACTAGCATAGG+GGG + chr2_2:55268557-55268576 None:intergenic 35.0%
GTCATGTTAAACTAGCATAG+GGG + chr2_2:55268558-55268577 None:intergenic 35.0%
GGTCATGTTAAACTAGCATA+GGG + chr2_2:55268559-55268578 None:intergenic 35.0%
CATAGTAACGAAGGATATAG+AGG + chr2_2:55268607-55268626 None:intergenic 35.0%
CATACTCTTTGATATGGGAA+AGG + chr2_2:55269027-55269046 None:intergenic 35.0%
CAAATACAACGCCCATAATA+AGG + chr2_2:55269152-55269171 None:intergenic 35.0%
!! GATGATGATGATAATGGTGA+TGG - chr2_2:55269483-55269502 Msa0258720:intron 35.0%
TTAAGGATGTGTTTGGATGA+AGG - chr2_2:55269584-55269603 Msa0258720:intron 35.0%
TAAGGATGTGTTTGGATGAA+GGG - chr2_2:55269585-55269604 Msa0258720:intron 35.0%
!! AAAATCCTTTAGGGTGTGTT+TGG + chr2_2:55269801-55269820 None:intergenic 35.0%
! TCATTTTGCAGATGCATATG+TGG - chr2_2:55270069-55270088 Msa0258720:intron 35.0%
! CATTTTGCAGATGCATATGT+GGG - chr2_2:55270070-55270089 Msa0258720:intron 35.0%
! ATTTTGCAGATGCATATGTG+GGG - chr2_2:55270071-55270090 Msa0258720:intron 35.0%
CATGGATCAGAATTTAGGAA+AGG - chr2_2:55270095-55270114 Msa0258720:intron 35.0%
!! AGAGTTCTGAAATCCTTCAA+TGG + chr2_2:55270224-55270243 None:intergenic 35.0%
!! CATTTGCTGTTAAAGGTGAT+TGG - chr2_2:55270306-55270325 Msa0258720:CDS 35.0%
! GTGTTTAAAATCTGAACCAC+AGG + chr2_2:55270372-55270391 None:intergenic 35.0%
! GATTTGTGCTGTTGAAATTG+TGG - chr2_2:55270592-55270611 Msa0258720:CDS 35.0%
GATGATGAGAGTGAGGAATT+AGG + chr2_2:55267353-55267372 None:intergenic 40.0%
TGATGAGTTAAAGGCGATGA+AGG + chr2_2:55267377-55267396 None:intergenic 40.0%
! AATCTTCCTTTTGCATCCCA+TGG + chr2_2:55267469-55267488 None:intergenic 40.0%
TCAGATTCACATCCTACGTT+AGG + chr2_2:55267548-55267567 None:intergenic 40.0%
! TTAAGGAGGAGAGAAGGTTT+TGG - chr2_2:55267645-55267664 Msa0258720:CDS 40.0%
CTTAATTGTGCGTCTTGTGT+CGG - chr2_2:55268481-55268500 Msa0258720:intron 40.0%
GGGTCATGTTAAACTAGCAT+AGG + chr2_2:55268560-55268579 None:intergenic 40.0%
TAAAAGTTGGGATACCCTAG+CGG + chr2_2:55268943-55268962 None:intergenic 40.0%
! GTGGTTCTTGATTAGCTCTT+TGG + chr2_2:55269457-55269476 None:intergenic 40.0%
TGTGTTTGGATGAAGGGTTT+AGG - chr2_2:55269591-55269610 Msa0258720:intron 40.0%
GTGTTTGGATGAAGGGTTTA+GGG - chr2_2:55269592-55269611 Msa0258720:intron 40.0%
TGTTTGGATGAAGGGTTTAG+GGG - chr2_2:55269593-55269612 Msa0258720:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr2_2:55269783-55269802 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr2_2:55269787-55269806 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr2_2:55269793-55269812 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG + chr2_2:55269794-55269813 None:intergenic 40.0%
TCAATCCAAACACACCCTAA+AGG - chr2_2:55269793-55269812 Msa0258720:intron 40.0%
! TGGGTTTTTCCGAATAACAC+CGG - chr2_2:55269869-55269888 Msa0258720:intron 40.0%
!! TATATGTGGCCGGTGTTATT+CGG + chr2_2:55269881-55269900 None:intergenic 40.0%
! TCTCTATTTTATGCGGGACT+TGG - chr2_2:55269917-55269936 Msa0258720:intron 40.0%
! CTCTATTTTATGCGGGACTT+GGG - chr2_2:55269918-55269937 Msa0258720:intron 40.0%
! TTTTGCAGATGCATATGTGG+GGG - chr2_2:55270072-55270091 Msa0258720:intron 40.0%
AAAGGACCAGACTCACTTAA+AGG - chr2_2:55270113-55270132 Msa0258720:intron 40.0%
TGTGTTCCTTTAAGTGAGTC+TGG + chr2_2:55270122-55270141 None:intergenic 40.0%
CCATGTTATTGTTGTGCTCA+CGG - chr2_2:55270164-55270183 Msa0258720:intron 40.0%
TCCAAGAGCAAAACCATTGA+AGG - chr2_2:55270208-55270227 Msa0258720:CDS 40.0%
!! TCCTTCAATGGTTTTGCTCT+TGG + chr2_2:55270212-55270231 None:intergenic 40.0%
!! AAGTTTTGGTATTGCACCTG+TGG - chr2_2:55270353-55270372 Msa0258720:CDS 40.0%
CATGTTAGATCCTTCGGAAA+AGG - chr2_2:55270410-55270429 Msa0258720:CDS 40.0%
TCTTCAAAGCCATCAAGAGA+AGG + chr2_2:55270449-55270468 None:intergenic 40.0%
GAGAAAGAATGCAGCAATAC+TGG - chr2_2:55270470-55270489 Msa0258720:CDS 40.0%
GCTCATGCATGATCATGATA+TGG - chr2_2:55270512-55270531 Msa0258720:CDS 40.0%
GATGAGAGTGAGGAATTAGG+TGG + chr2_2:55267350-55267369 None:intergenic 45.0%
TGAAGGAGATGATGAGAGTG+AGG + chr2_2:55267360-55267379 None:intergenic 45.0%
GGCTTAACTCCACTAGAGAT+TGG + chr2_2:55267434-55267453 None:intergenic 45.0%
TAGTGGAGTTAAGCCCTTTG+AGG - chr2_2:55267439-55267458 Msa0258720:CDS 45.0%
CACATTGGATTGCCTAACGT+AGG - chr2_2:55267533-55267552 Msa0258720:CDS 45.0%
ACAAGAATCTGAGCAGGAGT+TGG + chr2_2:55267674-55267693 None:intergenic 45.0%
ACTCCTGCTCAGATTCTTGT+TGG - chr2_2:55267674-55267693 Msa0258720:CDS 45.0%
ATGGAGCAAGCAAACTGCAT+AGG + chr2_2:55267701-55267720 None:intergenic 45.0%
AAAAGTTGGGATACCCTAGC+GGG + chr2_2:55268942-55268961 None:intergenic 45.0%
GTTTGGATGAAGGGTTTAGG+GGG - chr2_2:55269594-55269613 Msa0258720:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr2_2:55269782-55269801 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr2_2:55269784-55269803 None:intergenic 45.0%
TCTCTATTCCACGTGGGATT+TGG - chr2_2:55269849-55269868 Msa0258720:intron 45.0%
CTCTATTCCACGTGGGATTT+GGG - chr2_2:55269850-55269869 Msa0258720:intron 45.0%
CCGTGAGCACAACAATAACA+TGG + chr2_2:55270167-55270186 None:intergenic 45.0%
AGCCATCAAGAGAAGGAAGT+GGG + chr2_2:55270442-55270461 None:intergenic 45.0%
AAGCCATCAAGAGAAGGAAG+TGG + chr2_2:55270443-55270462 None:intergenic 45.0%
!!! TAATAATTAAATTTTATACA+CGG + chr2_2:55268581-55268600 None:intergenic 5.0%
ATCCCATGGTCGTCCTCAAA+GGG + chr2_2:55267455-55267474 None:intergenic 50.0%
GAAGGTGGAACATGTGACTG+TGG - chr2_2:55267505-55267524 Msa0258720:CDS 50.0%
! GTGACTGTGGCTTTGCACAT+TGG - chr2_2:55267518-55267537 Msa0258720:CDS 50.0%
GGTCCAACAAGAATCTGAGC+AGG + chr2_2:55267680-55267699 None:intergenic 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG + chr2_2:55269778-55269797 None:intergenic 50.0%
GGAAAAACCCAAATCCCACG+TGG + chr2_2:55269860-55269879 None:intergenic 50.0%
! GGGGGCATGGATCAGAATTT+AGG - chr2_2:55270090-55270109 Msa0258720:intron 50.0%
CACAACCAGCAGCAATGCTA+AGG - chr2_2:55270138-55270157 Msa0258720:intron 50.0%
! TGGGGAATGACCTTTTCCGA+AGG + chr2_2:55270423-55270442 None:intergenic 50.0%
TCCCCACTTCCTTCTCTTGA+TGG - chr2_2:55270437-55270456 Msa0258720:CDS 50.0%
GCCATCAAGAGAAGGAAGTG+GGG + chr2_2:55270441-55270460 None:intergenic 50.0%
! AAGCCCTTTGAGGACGACCA+TGG - chr2_2:55267449-55267468 Msa0258720:CDS 55.0%
! AGCCCTTTGAGGACGACCAT+GGG - chr2_2:55267450-55267469 Msa0258720:CDS 55.0%
CATCCCATGGTCGTCCTCAA+AGG + chr2_2:55267456-55267475 None:intergenic 55.0%
GGACGACCATGGGATGCAAA+AGG - chr2_2:55267460-55267479 Msa0258720:CDS 55.0%
GGATGAAGGGTTTAGGGGGA+TGG - chr2_2:55269598-55269617 Msa0258720:intron 55.0%
GATTGAGGGTTTAGGAGGGG+AGG + chr2_2:55269779-55269798 None:intergenic 55.0%
CAGATGCATATGTGGGGGCA+TGG - chr2_2:55270077-55270096 Msa0258720:intron 55.0%
TTGTTGTCCCGCTCCCGCTA+GGG - chr2_2:55268926-55268945 Msa0258720:intron 60.0%
TTGGGATACCCTAGCGGGAG+CGG + chr2_2:55268937-55268956 None:intergenic 60.0%
GGCAGCCTTAGCATTGCTGC+TGG + chr2_2:55270146-55270165 None:intergenic 60.0%
! CTTGTTGTCCCGCTCCCGCT+AGG - chr2_2:55268925-55268944 Msa0258720:intron 65.0%
TGGGATACCCTAGCGGGAGC+GGG + chr2_2:55268936-55268955 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 55267214 55270728 55267214 ID=Msa0258720;Name=Msa0258720
chr2_2 mRNA 55267214 55270728 55267214 ID=Msa0258720-mRNA-1;Parent=Msa0258720;Name=Msa0258720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|205|310
chr2_2 exon 55267214 55267862 55267214 ID=Msa0258720-mRNA-1:exon:16711;Parent=Msa0258720-mRNA-1
chr2_2 exon 55270185 55270728 55270185 ID=Msa0258720-mRNA-1:exon:16710;Parent=Msa0258720-mRNA-1
chr2_2 five_prime_UTR 55270674 55270728 55270674 ID=Msa0258720-mRNA-1:five_prime_utr;Parent=Msa0258720-mRNA-1
chr2_2 CDS 55270185 55270673 55270185 ID=Msa0258720-mRNA-1:cds;Parent=Msa0258720-mRNA-1
chr2_2 CDS 55267419 55267862 55267419 ID=Msa0258720-mRNA-1:cds;Parent=Msa0258720-mRNA-1
chr2_2 three_prime_UTR 55267214 55267418 55267214 ID=Msa0258720-mRNA-1:three_prime_utr;Parent=Msa0258720-mRNA-1
Gene Sequence

>Msa0258720

ATGGGTTTGAGGGATCAGTGCAATGTAGAAGACAAGAATCTCTACCTTCAAACCCCAAATTTCATTGAATGGCTCAAACCACCTAATTCCTCACTCTCATCATCTCCTTCATCGCCTTTAACTCATCAACACAAACTATCCCAAGAAACTTTCCAGTTTTTACCAATCTCTAGTGGAGTTAAGCCCTTTGAGGACGACCATGGGATGCAAAAGGAAGATTTTGAAGTAAAAGAAGAGAAGGTGGAACATGTGACTGTGGCTTTGCACATTGGATTGCCTAACGTAGGATGTGAATCTGATGAACATGATGAGAAGAATAAGGTTTTTGATTGTGTTAAGGAAGAAGAATTGAAGAAAAACGTGCATGGTTTTTGTTTTAAGGAGGAGAGAAGGTTTTGGATACCAACTCCTGCTCAGATTCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGCAGTAAGACCTTCAATAGATACAACAATATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGGCTGCCATGTTATTGTTGTGCTCACGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAACCATTGAAGGATTTCAGAACTCTCCAAACTCATTACAAAAGAAAGCATGGAACAAAACCATTTATCTGCAGAAAATGTTCTAAAGCATTTGCTGTTAAAGGTGATTGGAGAACTCATGAGAAAAATTGTGGAAAGTTTTGGTATTGCACCTGTGGTTCAGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCCTTCGGAAAAGGTCATTCCCCACTTCCTTCTCTTGATGGCTTTGAAGATGAGAAAGAATGCAGCAATACTGGATCTGATGATGATGAAGTTGCTCATGCATGA

Protein sequence

>Msa0258720

MGLRDQCNVEDKNLYLQTPNFIEWLKPPNSSLSSSPSSPLTHQHKLSQETFQFLPISSGVKPFEDDHGMQKEDFEVKEEKVEHVTVALHIGLPNVGCESDEHDEKNKVFDCVKEEELKKNVHGFCFKEERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFICRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPLPSLDGFEDEKECSNTGSDDDEVAHA*