AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259340 MtrunA17_Chr2g0322161 82.510 263 23 4 49 290 104 364 1.58e-151 429
Msa0259340 MtrunA17_Chr1g0170231 57.018 228 81 3 80 290 114 341 1.82e-81 249
Msa0259340 MtrunA17_Chr1g0170151 55.605 223 81 3 81 287 117 337 3.60e-67 213
Msa0259340 MtrunA17_Chr3g0137661 41.414 297 122 9 32 290 91 373 3.31e-58 191
Msa0259340 MtrunA17_Chr2g0298501 29.952 207 106 7 82 269 157 343 8.09e-26 105
Msa0259340 MtrunA17_Chr1g0209531 30.405 296 150 14 31 293 121 393 3.00e-25 104
Msa0259340 MtrunA17_Chr1g0148241 32.275 189 91 7 93 263 174 343 9.27e-25 102
Msa0259340 MtrunA17_Chr4g0071911 29.082 196 103 6 82 260 159 335 5.05e-24 100
Msa0259340 MtrunA17_Chr2g0276861 31.646 237 117 9 82 293 222 438 2.96e-23 99.0
Msa0259340 MtrunA17_Chr1g0151841 32.883 222 103 9 93 289 172 372 3.57e-23 98.2
Msa0259340 MtrunA17_Chr3g0138871 31.500 200 96 8 90 269 152 330 2.08e-22 95.9
Msa0259340 MtrunA17_Chr8g0341461 29.897 291 147 14 31 287 140 407 5.97e-22 95.1
Msa0259340 MtrunA17_Chr4g0073871 31.602 231 110 9 90 294 14 222 1.60e-21 90.5
Msa0259340 MtrunA17_Chr2g0298511 28.502 207 108 8 82 269 149 334 1.84e-21 93.2
Msa0259340 MtrunA17_Chr5g0423131 29.617 287 147 11 33 287 121 384 2.74e-21 92.8
Msa0259340 MtrunA17_Chr6g0484141 30.802 237 120 8 82 294 204 420 1.96e-20 90.9
Msa0259340 MtrunA17_Chr5g0394981 32.642 193 93 7 93 270 10 180 9.14e-20 85.9
Msa0259340 MtrunA17_Chr5g0394961 30.116 259 143 9 31 270 148 387 1.32e-19 88.2
Msa0259340 MtrunA17_Chr3g0136091 28.571 294 161 11 19 294 132 394 3.95e-18 84.0
Msa0259340 MtrunA17_Chr2g0289021 30.734 218 90 9 90 268 127 322 1.53e-17 82.0
Msa0259340 MtrunA17_Chr8g0384601 29.091 220 93 8 90 268 120 317 1.48e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259340 AT5G22070.1 65.652 230 56 4 84 290 129 358 1.12e-102 305
Msa0259340 AT3G52060.1 49.231 260 96 6 56 290 94 342 1.98e-78 242
Msa0259340 AT5G25330.1 47.257 237 86 6 80 290 135 358 7.93e-60 195
Msa0259340 AT4G32290.1 44.402 259 92 6 71 290 130 375 4.38e-53 178
Msa0259340 AT4G31350.3 29.167 264 141 10 24 264 75 315 6.76e-29 114
Msa0259340 AT4G31350.4 30.000 270 136 12 24 264 75 320 1.41e-28 113
Msa0259340 AT4G31350.1 30.000 270 136 12 24 264 75 320 1.41e-28 113
Msa0259340 AT4G31350.2 30.000 270 136 12 24 264 75 320 1.41e-28 113
Msa0259340 AT5G57270.3 33.333 186 87 6 93 260 160 326 1.39e-25 105
Msa0259340 AT5G57270.1 33.333 186 87 6 93 260 160 326 1.39e-25 105
Msa0259340 AT5G57270.4 33.333 186 87 6 93 260 160 326 1.39e-25 105
Msa0259340 AT5G57270.5 33.333 186 87 6 93 260 160 326 1.39e-25 105
Msa0259340 AT5G57270.2 33.333 186 87 6 93 260 160 326 1.39e-25 105
Msa0259340 AT4G25870.1 33.871 186 86 6 93 260 161 327 1.94e-25 104
Msa0259340 AT4G30060.2 31.034 203 105 6 82 267 160 344 4.29e-25 103
Msa0259340 AT4G30060.1 31.034 203 105 6 82 267 160 344 4.29e-25 103
Msa0259340 AT5G25970.1 32.759 232 112 10 80 287 170 381 6.11e-25 103
Msa0259340 AT5G25970.2 32.759 232 112 10 80 287 170 381 6.11e-25 103
Msa0259340 AT5G25970.3 32.759 232 112 10 80 287 170 381 6.11e-25 103
Msa0259340 AT2G19160.2 32.487 197 96 7 82 260 157 334 1.70e-24 102
Msa0259340 AT2G19160.1 32.487 197 96 7 82 260 157 334 1.70e-24 102
Msa0259340 AT1G51770.1 29.758 289 149 15 31 287 120 386 2.80e-24 102
Msa0259340 AT3G21310.1 31.197 234 121 9 82 293 168 383 1.05e-23 100
Msa0259340 AT3G21310.3 31.197 234 121 9 82 293 168 383 1.05e-23 100
Msa0259340 AT1G10280.1 30.833 240 115 11 82 293 196 412 1.28e-23 100
Msa0259340 AT5G11730.1 31.356 236 118 10 82 293 171 386 5.33e-22 95.1
Msa0259340 AT5G16170.1 31.489 235 112 10 82 287 189 403 1.86e-20 91.3
Msa0259340 AT1G68380.1 33.173 208 101 8 82 279 177 356 5.66e-20 89.7
Msa0259340 AT1G68390.1 30.000 240 122 9 80 293 189 408 1.33e-19 88.6
Msa0259340 AT1G11940.1 30.435 253 106 11 61 265 100 330 6.81e-17 80.5
Msa0259340 AT1G10880.1 29.741 232 119 10 80 287 169 380 3.63e-16 78.6
Msa0259340 AT5G14550.2 30.769 208 94 8 90 267 129 316 3.67e-16 78.2
Msa0259340 AT1G62305.1 31.604 212 88 9 93 268 137 327 4.20e-16 78.2
Msa0259340 AT5G14550.1 28.837 215 94 7 93 268 132 326 2.50e-14 73.2
Msa0259340 AT5G14550.3 28.837 215 94 7 93 268 132 326 2.51e-14 73.2
Msa0259340 AT5G14550.4 31.915 188 96 8 93 268 132 299 2.15e-13 70.1
Msa0259340 AT1G73810.1 29.442 197 104 9 82 264 202 377 7.85e-13 68.9
Msa0259340 AT1G62305.3 34.375 160 55 7 93 223 137 275 1.30e-12 67.8
Msa0259340 AT1G11940.2 39.669 121 49 5 84 202 133 231 2.62e-11 63.5

Find 136 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGAGAGATGAAAGAATT+TGG 0.208741 2_2:+56326363 None:intergenic
GCACTGTAGAGAATTGATTT+TGG 0.231426 2_2:+56323177 None:intergenic
AGTGAATGTGAAGATATTTA+TGG 0.243978 2_2:-56323885 Msa0259340:CDS
TTCCAAAAGTGTACTTCTTT+TGG 0.258576 2_2:-56323542 Msa0259340:three_prime_UTR
TCCTTTCCTTAGGGCCTGTT+TGG 0.276015 2_2:-56323226 Msa0259340:three_prime_UTR
ATCTTTGAAAATAACAGATT+TGG 0.276902 2_2:+56325475 None:intergenic
GACCAAAAGAAGTACACTTT+TGG 0.291622 2_2:+56323540 None:intergenic
TCGGTCCATCAGAGAGTTTC+CGG 0.296790 2_2:+56323771 None:intergenic
TAAACATTGAATAATTTAGA+TGG 0.309104 2_2:+56326250 None:intergenic
GAGGATTCTGATGGTGTTAC+TGG 0.315065 2_2:-56325674 Msa0259340:CDS
GGTAGGCGGCCAATGGAATT+AGG 0.322962 2_2:+56323384 None:intergenic
GCTTCATGGAGAATTGCTTT+TGG 0.327793 2_2:+56323092 None:intergenic
TCTCCTTGAACAACGTGTAT+AGG 0.329808 2_2:-56323034 Msa0259340:three_prime_UTR
ATTACCTAAACAATCTTCTA+TGG 0.349395 2_2:+56323622 None:intergenic
AATTGGACTGGGACTGTTAA+TGG 0.353305 2_2:-56325632 Msa0259340:CDS
ATTTCAACCGAACACCGAAT+TGG 0.361586 2_2:+56325951 None:intergenic
ATTCAAGAAAACAGAGAGAT+AGG 0.361657 2_2:-56323723 Msa0259340:three_prime_UTR
ATTGCCATAGAAGATTGTTT+AGG 0.362687 2_2:-56323626 Msa0259340:three_prime_UTR
ATACACTTACCAATGTGAAT+TGG 0.369149 2_2:-56325649 Msa0259340:CDS
AAAATAGAACAGTTGCAAAA+AGG 0.371617 2_2:+56323420 None:intergenic
AGTATCAGATTCCTTTCCTT+AGG 0.375122 2_2:-56323236 Msa0259340:three_prime_UTR
TCAACAATGGTCCTAGGTTA+TGG 0.378887 2_2:-56325907 Msa0259340:CDS
TCAGAGAGTTTCCGGTATAT+AGG 0.389892 2_2:+56323779 None:intergenic
TTTCAACCGAACACCGAATT+GGG 0.399194 2_2:+56325952 None:intergenic
GAAATTTGTTCCTGATTGCT+TGG 0.406788 2_2:-56325516 Msa0259340:CDS
GATTCCAGAGAGGGGTGAAA+TGG 0.407050 2_2:+56326290 None:intergenic
CGTTTGAGAAATTTCGTGTT+GGG 0.409497 2_2:-56325838 Msa0259340:CDS
AGCTAGGATTTATAGCTTCA+TGG 0.411891 2_2:+56323078 None:intergenic
AATCGACCCAATTCGGTGTT+CGG 0.414363 2_2:-56325958 Msa0259340:intron
AACGTTTGATTTAACCGATT+CGG 0.415173 2_2:-56325981 Msa0259340:CDS
GATTCGGAATCGACCCAATT+CGG 0.415724 2_2:-56325965 Msa0259340:CDS
GAAGAAAAGTAAAAGGAGAA+AGG 0.415911 2_2:+56323362 None:intergenic
TTTGACAAGAAAACATGCTT+TGG 0.419279 2_2:-56325801 Msa0259340:intron
AAGAAAAGTAAAAGGAGAAA+GGG 0.422906 2_2:+56323363 None:intergenic
TGATTGCTTGGAACCATTGA+TGG 0.426338 2_2:-56325504 Msa0259340:CDS
AATTTCTCAAACGGAACTTC+CGG 0.431140 2_2:+56325848 None:intergenic
AGGGGTGTGAAGAGGAAGAA+GGG 0.436253 2_2:+56326386 None:intergenic
ATCTCCATTTCACCCCTCTC+TGG 0.436718 2_2:-56326294 Msa0259340:CDS
GTATCAGATTCCTTTCCTTA+GGG 0.437137 2_2:-56323235 Msa0259340:three_prime_UTR
ATCAATGGTTCCAAGCAATC+AGG 0.437224 2_2:+56325506 None:intergenic
CATGTGATCACTGTCTTTCG+TGG 0.444520 2_2:-56323317 Msa0259340:three_prime_UTR
TTATGGCTGAGAGATGATAT+TGG 0.455789 2_2:-56323868 Msa0259340:exon
GATCGGTGTTGGTGAGGAAA+AGG 0.455897 2_2:+56326314 None:intergenic
TTTCTGGCTCCTAATTCCAT+TGG 0.461024 2_2:-56323393 Msa0259340:three_prime_UTR
TTGCAGAATGCACAAGCAAT+TGG 0.464082 2_2:+56323448 None:intergenic
AAACATTGAATAATTTAGAT+GGG 0.466588 2_2:+56326251 None:intergenic
ATGGAATTAGGAGCCAGAAA+AGG 0.466672 2_2:+56323396 None:intergenic
GTTGAGAAAGTCGAATAATT+CGG 0.467142 2_2:-56325558 Msa0259340:CDS
TGGAATTAGGAGCCAGAAAA+GGG 0.468006 2_2:+56323397 None:intergenic
ATCAATGCTACCTCATGTTC+AGG 0.468588 2_2:+56323499 None:intergenic
GACGGTACAAATTTGAAGAT+GGG 0.469772 2_2:+56326169 None:intergenic
GAGGGGTGTGAAGAGGAAGA+AGG 0.470582 2_2:+56326385 None:intergenic
TCTCAGAAGTGGAACCAAAC+AGG 0.472317 2_2:+56323212 None:intergenic
AGACGGTACAAATTTGAAGA+TGG 0.472395 2_2:+56326168 None:intergenic
CCGTTTGAGAAATTTCGTGT+TGG 0.473342 2_2:-56325839 Msa0259340:CDS
GGGTGTGAAGAGGAAGAAGG+GGG 0.474839 2_2:+56326388 None:intergenic
GGGGTGTGAAGAGGAAGAAG+GGG 0.477919 2_2:+56326387 None:intergenic
AAATTATCAACAATGGTCCT+AGG 0.486241 2_2:-56325913 Msa0259340:CDS
CTTACCAATGTGAATTGGAC+TGG 0.493929 2_2:-56325644 Msa0259340:CDS
AATTATTCGACTTTCTCAAC+CGG 0.502661 2_2:+56325561 None:intergenic
AAACCTATACACGTTGTTCA+AGG 0.504530 2_2:+56323031 None:intergenic
ATATTGTGGCTATAGCTTGA+TGG 0.506894 2_2:-56323839 Msa0259340:three_prime_UTR
GATTTGGCAATACCCATCAA+TGG 0.512678 2_2:+56325491 None:intergenic
GGATCGCTGAAGCAAGTAAA+CGG 0.513510 2_2:+56326101 None:intergenic
TCCTACGTTGTTGTCTATGG+AGG 0.514638 2_2:-56325693 Msa0259340:CDS
GTAGGAAAATAATGTTCCTC+AGG 0.514706 2_2:+56325710 None:intergenic
CTTTAATTTCATTATGTGTG+TGG 0.518438 2_2:-56323262 Msa0259340:three_prime_UTR
GGTGCTCTTCTATATTCAGT+TGG 0.519705 2_2:-56323672 Msa0259340:three_prime_UTR
AAGAACGATGAAATAAGCAT+TGG 0.522467 2_2:+56326066 None:intergenic
AGTACTACTCCATCTTATAG+TGG 0.523035 2_2:-56323285 Msa0259340:three_prime_UTR
TCCTCCGGCTGATACGTATG+AGG 0.524726 2_2:+56325605 None:intergenic
CGCGTGGCGGAGATTAAAGT+GGG 0.528482 2_2:+56326124 None:intergenic
GGTTAACGCGCGGGTCGGAA+TGG 0.528505 2_2:+56326224 None:intergenic
AAATTAAAGCCACTATAAGA+TGG 0.531212 2_2:+56323276 None:intergenic
GCGCGTGGCGGAGATTAAAG+TGG 0.534851 2_2:+56326123 None:intergenic
GAGAGATGAAAGAATTTGGA+GGG 0.534851 2_2:+56326367 None:intergenic
AGAGAGATGAAAGAATTTGG+AGG 0.536586 2_2:+56326366 None:intergenic
GAATTTGGAGGGGTGTGAAG+AGG 0.541017 2_2:+56326378 None:intergenic
TTTATTGAAATTATCAACAA+TGG 0.541878 2_2:-56325920 Msa0259340:CDS
GGTGAAATGGAGATCGGTGT+TGG 0.542512 2_2:+56326303 None:intergenic
GTGGAACCAAACAGGCCCTA+AGG 0.543878 2_2:+56323220 None:intergenic
CACTCATCATCACGGTAACA+AGG 0.544806 2_2:+56325737 None:intergenic
CTAGAATTGCTTCTCAGAAG+TGG 0.545241 2_2:+56323201 None:intergenic
CCAACACGAAATTTCTCAAA+CGG 0.545393 2_2:+56325839 None:intergenic
TGGACGTTACGCGATGATGC+CGG 0.547095 2_2:-56325867 Msa0259340:CDS
GATATTGGTTGATGATATTG+TGG 0.548010 2_2:-56323853 Msa0259340:three_prime_UTR
TCAGTTGGTGCAATGCAAGT+TGG 0.550891 2_2:-56323657 Msa0259340:three_prime_UTR
TATAATCAAACGAATGAAGA+GGG 0.552046 2_2:+56326029 None:intergenic
TAGTTTGAAGAAGCAATGTA+CGG 0.554306 2_2:-56323809 Msa0259340:three_prime_UTR
GAGAAAGGGTAGGCGGCCAA+TGG 0.555828 2_2:+56323377 None:intergenic
GAATTGGGTCGATTCCGAAT+CGG 0.559523 2_2:+56325967 None:intergenic
AACATTGAATAATTTAGATG+GGG 0.564738 2_2:+56326252 None:intergenic
AAAGTAAAAGGAGAAAGGGT+AGG 0.564744 2_2:+56323367 None:intergenic
GTGAAATAGCGGTGTTGAAG+AGG 0.564970 2_2:+56326419 None:intergenic
GAAAGAAGAGATTCCAGAGA+GGG 0.567482 2_2:+56326281 None:intergenic
TTGTCTATGGAGGATTCTGA+TGG 0.567511 2_2:-56325683 Msa0259340:CDS
ACCAAACAGGCCCTAAGGAA+AGG 0.571034 2_2:+56323225 None:intergenic
CCATCCTCATACGTATCAGC+CGG 0.571067 2_2:-56325609 Msa0259340:CDS
ACGGTACAAATTTGAAGATG+GGG 0.571190 2_2:+56326170 None:intergenic
CGTGAGGTTAACGCGCGGGT+CGG 0.572231 2_2:+56326219 None:intergenic
ATATACCGGAAACTCTCTGA+TGG 0.573662 2_2:-56323776 Msa0259340:three_prime_UTR
ACGGGTCACAACCTATATAC+CGG 0.576622 2_2:-56323790 Msa0259340:three_prime_UTR
TTCTAGAAAAGCTAGAAGCT+AGG 0.580059 2_2:+56323062 None:intergenic
GATTGCTTGGAACCATTGAT+GGG 0.586536 2_2:-56325503 Msa0259340:CDS
AGAGATGAAAGAATTTGGAG+GGG 0.587496 2_2:+56326368 None:intergenic
TGAAGCAAGTAAACGGCGCG+TGG 0.594303 2_2:+56326108 None:intergenic
TGAAAGAAGAGATTCCAGAG+AGG 0.594543 2_2:+56326280 None:intergenic
AGCTCCGGTGACACTTCCTC+CGG 0.595229 2_2:+56325590 None:intergenic
CTCAACCGGAGAATAAGCTC+CGG 0.595442 2_2:+56325575 None:intergenic
TGGAAGCGTTACACGGCGCG+TGG 0.597375 2_2:-56325887 Msa0259340:CDS
CCGGCTGATACGTATGAGGA+TGG 0.599049 2_2:+56325609 None:intergenic
GAGAGGGGTGAAATGGAGAT+CGG 0.601775 2_2:+56326297 None:intergenic
TCAGCCGGAGGAAGTGTCAC+CGG 0.606036 2_2:-56325594 Msa0259340:CDS
AGTTTGAAGAAGCAATGTAC+GGG 0.606738 2_2:-56323808 Msa0259340:three_prime_UTR
TGTCACCGGAGCTTATTCTC+CGG 0.607381 2_2:-56325580 Msa0259340:CDS
ATATAATCAAACGAATGAAG+AGG 0.616226 2_2:+56326028 None:intergenic
TTACCAATGTGAATTGGACT+GGG 0.620634 2_2:-56325643 Msa0259340:CDS
AGCAAGTAAACGGCGCGTGG+CGG 0.624709 2_2:+56326111 None:intergenic
GGGTGTAGAATGTGAAATAG+CGG 0.628873 2_2:+56326408 None:intergenic
GAATCGGTTAAATCAAACGT+TGG 0.632414 2_2:+56325983 None:intergenic
AATGGAGATCGGTGTTGGTG+AGG 0.638764 2_2:+56326308 None:intergenic
CATCATTAATGAAATAGAGT+CGG 0.643658 2_2:+56323752 None:intergenic
GTGTAACGCTTCCATAACCT+AGG 0.647995 2_2:+56325896 None:intergenic
TAGGTTATGGAAGCGTTACA+CGG 0.650942 2_2:-56325894 Msa0259340:CDS
AAAGAAGAGATTCCAGAGAG+GGG 0.653261 2_2:+56326282 None:intergenic
TCCTCATACGTATCAGCCGG+AGG 0.654016 2_2:-56325606 Msa0259340:CDS
TGAGATGTTGCCTGAACATG+AGG 0.664333 2_2:-56323509 Msa0259340:three_prime_UTR
AGTCCCAGTCCAATTCACAT+TGG 0.674151 2_2:+56325640 None:intergenic
CAGGATAACACTCATCATCA+CGG 0.676655 2_2:+56325729 None:intergenic
CGTGGCGGAGATTAAAGTGG+GGG 0.678137 2_2:+56326126 None:intergenic
GTAAAAGGAGAAAGGGTAGG+CGG 0.690764 2_2:+56323370 None:intergenic
AAGCATTGGAAGCATCGTCG+AGG 0.706280 2_2:+56326080 None:intergenic
TTGTGGCTATAGCTTGATGG+CGG 0.723637 2_2:-56323836 Msa0259340:three_prime_UTR
GCGTGGCGGAGATTAAAGTG+GGG 0.740739 2_2:+56326125 None:intergenic
TCCTCCATAGACAACAACGT+AGG 0.744754 2_2:+56325692 None:intergenic
TGATGATGAGTGTTATCCTG+AGG 0.777255 2_2:-56325726 Msa0259340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTGAATAATTTAGAT+GGG + chr2_2:56323170-56323189 None:intergenic 15.0%
!! TAAACATTGAATAATTTAGA+TGG + chr2_2:56323171-56323190 None:intergenic 15.0%
!! TTTATTGAAATTATCAACAA+TGG - chr2_2:56323498-56323517 Msa0259340:three_prime_UTR 15.0%
!!! TCTAGAATAATATTCTAATA+GGG + chr2_2:56325358-56325377 None:intergenic 15.0%
!!! ATCTAGAATAATATTCTAAT+AGG + chr2_2:56325359-56325378 None:intergenic 15.0%
!! AAAAATATTCTGTTCAAATT+TGG - chr2_2:56325947-56325966 Msa0259340:intron 15.0%
!! AACATTGAATAATTTAGATG+GGG + chr2_2:56323169-56323188 None:intergenic 20.0%
!!! ATCTTTGAAAATAACAGATT+TGG + chr2_2:56323946-56323965 None:intergenic 20.0%
!!! ATTTTCAAAGATTGAAACTT+TGG - chr2_2:56323954-56323973 Msa0259340:intron 20.0%
!!! TTTTCAAAGATTGAAACTTT+GGG - chr2_2:56323955-56323974 Msa0259340:intron 20.0%
!!! ATTTTCCTTTTTGTTATTGA+TGG - chr2_2:56324041-56324060 Msa0259340:intron 20.0%
!!! TTTTCCTTTTTGTTATTGAT+GGG - chr2_2:56324042-56324061 Msa0259340:intron 20.0%
!! TTATGTTAGAAATTAGAATC+TGG - chr2_2:56324128-56324147 Msa0259340:intron 20.0%
!! TATGTTAGAAATTAGAATCT+GGG - chr2_2:56324129-56324148 Msa0259340:intron 20.0%
!!! TCAAATTACTTTTTGTTTGT+TGG - chr2_2:56324210-56324229 Msa0259340:intron 20.0%
!!! TTTACTTAGAAATTTGGAAT+GGG - chr2_2:56324493-56324512 Msa0259340:intron 20.0%
!! TATTTGGTATCCAAAAATTT+AGG + chr2_2:56325255-56325274 None:intergenic 20.0%
!!! CTTTTACTTTTCTTCTTTTT+GGG - chr2_2:56326064-56326083 Msa0259340:CDS 20.0%
! TATAATCAAACGAATGAAGA+GGG + chr2_2:56323392-56323411 None:intergenic 25.0%
! ATATAATCAAACGAATGAAG+AGG + chr2_2:56323393-56323412 None:intergenic 25.0%
! TTTCAAAGATTGAAACTTTG+GGG - chr2_2:56323956-56323975 Msa0259340:intron 25.0%
! GAAATTTCAAGATCTTGATA+TGG - chr2_2:56323980-56323999 Msa0259340:intron 25.0%
! AGTTAGTTATGAGAAAAGTT+TGG - chr2_2:56324068-56324087 Msa0259340:intron 25.0%
!! AAGTTTGGAACTTTATTTGA+TGG - chr2_2:56324083-56324102 Msa0259340:intron 25.0%
!! AGTTTGGAACTTTATTTGAT+GGG - chr2_2:56324084-56324103 Msa0259340:intron 25.0%
! TTTGATGGGAATTATTTATC+AGG - chr2_2:56324098-56324117 Msa0259340:intron 25.0%
!!! TTTTTGTTTGTTGGAATCAA+AGG - chr2_2:56324219-56324238 Msa0259340:intron 25.0%
!!! ATTTGAGATTTTGACATTTG+AGG - chr2_2:56324244-56324263 Msa0259340:intron 25.0%
!!! TTTGAGGTTTAGAATTTTGA+AGG - chr2_2:56324260-56324279 Msa0259340:intron 25.0%
!!! TTGAGGTTTAGAATTTTGAA+GGG - chr2_2:56324261-56324280 Msa0259340:intron 25.0%
! ATTTCTAAGTAAAGCACAAA+TGG + chr2_2:56324486-56324505 None:intergenic 25.0%
! TTGTGCTTTACTTAGAAATT+TGG - chr2_2:56324487-56324506 Msa0259340:intron 25.0%
! CTTTACTTAGAAATTTGGAA+TGG - chr2_2:56324492-56324511 Msa0259340:intron 25.0%
!! TTACTTAGAAATTTGGAATG+GGG - chr2_2:56324494-56324513 Msa0259340:intron 25.0%
!!! ATAATTGCTGTTTGTATTTG+TGG - chr2_2:56324540-56324559 Msa0259340:intron 25.0%
!!! TGCATTTACTTTTTTCTAGT+TGG - chr2_2:56324813-56324832 Msa0259340:intron 25.0%
!!! GCATTTACTTTTTTCTAGTT+GGG - chr2_2:56324814-56324833 Msa0259340:intron 25.0%
! CAAATGTCAAAATCTCAAAT+TGG + chr2_2:56324244-56324263 None:intergenic 25.0%
!!! ATTTGAGATTTTGACATTTG+AGG - chr2_2:56324244-56324263 Msa0259340:intron 25.0%
!! TTTGAGGATTAGAATTTTGA+AGG - chr2_2:56324864-56324883 Msa0259340:intron 25.0%
!! TTGAGGATTAGAATTTTGAA+GGG - chr2_2:56324865-56324884 Msa0259340:intron 25.0%
! TTTGTGCTTACTTAGAAATT+AGG - chr2_2:56324935-56324954 Msa0259340:intron 25.0%
! CTTACTTAGAAATTAGGAAT+GGG - chr2_2:56324941-56324960 Msa0259340:intron 25.0%
! TTACTTAGAAATTAGGAATG+GGG - chr2_2:56324942-56324961 Msa0259340:intron 25.0%
!!! ATAATTGTTGTTTGTGTATG+TGG - chr2_2:56324988-56325007 Msa0259340:intron 25.0%
!!! TAGTTGGTTTATCTTCTTTT+TGG - chr2_2:56325079-56325098 Msa0259340:intron 25.0%
! TTCATATCTATATCAGGATT+TGG + chr2_2:56325140-56325159 None:intergenic 25.0%
! GAATCTGATTAAGATACTAA+TGG + chr2_2:56325453-56325472 None:intergenic 25.0%
! AGTGAATGTGAAGATATTTA+TGG - chr2_2:56325533-56325552 Msa0259340:intron 25.0%
! CATCATTAATGAAATAGAGT+CGG + chr2_2:56325669-56325688 None:intergenic 25.0%
! ATGATGAGTAAAAAAAAGAG+AGG - chr2_2:56325721-56325740 Msa0259340:CDS 25.0%
! ATTACCTAAACAATCTTCTA+TGG + chr2_2:56325799-56325818 None:intergenic 25.0%
! AAAATAGAACAGTTGCAAAA+AGG + chr2_2:56326001-56326020 None:intergenic 25.0%
! AAGAAAAGTAAAAGGAGAAA+GGG + chr2_2:56326058-56326077 None:intergenic 25.0%
! CCAAAAAGAAGAAAAGTAAA+AGG + chr2_2:56326066-56326085 None:intergenic 25.0%
!!! CCTTTTACTTTTCTTCTTTT+TGG - chr2_2:56326063-56326082 Msa0259340:CDS 25.0%
! AAATTAAAGCCACTATAAGA+TGG + chr2_2:56326145-56326164 None:intergenic 25.0%
!! CTTTAATTTCATTATGTGTG+TGG - chr2_2:56326156-56326175 Msa0259340:CDS 25.0%
AAGAACGATGAAATAAGCAT+TGG + chr2_2:56323355-56323374 None:intergenic 30.0%
! AACGTTTGATTTAACCGATT+CGG - chr2_2:56323437-56323456 Msa0259340:three_prime_UTR 30.0%
AAATTATCAACAATGGTCCT+AGG - chr2_2:56323505-56323524 Msa0259340:three_prime_UTR 30.0%
TTTGACAAGAAAACATGCTT+TGG - chr2_2:56323617-56323636 Msa0259340:three_prime_UTR 30.0%
ATACACTTACCAATGTGAAT+TGG - chr2_2:56323769-56323788 Msa0259340:three_prime_UTR 30.0%
AATTATTCGACTTTCTCAAC+CGG + chr2_2:56323860-56323879 None:intergenic 30.0%
GTTGAGAAAGTCGAATAATT+CGG - chr2_2:56323860-56323879 Msa0259340:three_prime_UTR 30.0%
TTCAAAGATTGAAACTTTGG+GGG - chr2_2:56323957-56323976 Msa0259340:intron 30.0%
TGAACCCATCAATAACAAAA+AGG + chr2_2:56324049-56324068 None:intergenic 30.0%
! AAACACTCCTTGATGTTTTT+AGG - chr2_2:56324180-56324199 Msa0259340:intron 30.0%
!! AACACTCCTTGATGTTTTTA+GGG - chr2_2:56324181-56324200 Msa0259340:intron 30.0%
!! TTTAGAATTTTGAAGGGACT+TGG - chr2_2:56324267-56324286 Msa0259340:intron 30.0%
TTGTATTTGTGGTGAGAAAA+TGG - chr2_2:56324551-56324570 Msa0259340:intron 30.0%
TTGCAAATTAACTGCTAATG+AGG + chr2_2:56324744-56324763 None:intergenic 30.0%
!! AGTTAATTTGCAACTATCTC+TGG - chr2_2:56324751-56324770 Msa0259340:intron 30.0%
TAGGTGGTTTATCTTCTTTA+CGG - chr2_2:56324785-56324804 Msa0259340:intron 30.0%
GCTTACTTAGAAATTAGGAA+TGG - chr2_2:56324940-56324959 Msa0259340:intron 30.0%
TTGTGGTGAAAAAATGGTTT+AGG - chr2_2:56325021-56325040 Msa0259340:intron 30.0%
! TACTGTGTGTTGATATGAAA+TGG - chr2_2:56325047-56325066 Msa0259340:intron 30.0%
ATCCAAAAATTTAGGTGAGT+AGG + chr2_2:56325247-56325266 None:intergenic 30.0%
!!! CCACTCTAGTTTTTTCTATT+TGG + chr2_2:56325271-56325290 None:intergenic 30.0%
CCAAATAGAAAAAACTAGAG+TGG - chr2_2:56325268-56325287 Msa0259340:intron 30.0%
ATAGAAAAAACTAGAGTGGA+TGG - chr2_2:56325272-56325291 Msa0259340:intron 30.0%
! AATCTGAAGTGTTATGCTTA+TGG - chr2_2:56325313-56325332 Msa0259340:intron 30.0%
TGGAAACAAAATCTAACACA+AGG + chr2_2:56325433-56325452 None:intergenic 30.0%
!!! ATTCACTGAACTTTTTCATC+TGG + chr2_2:56325520-56325539 None:intergenic 30.0%
!! GATATTGGTTGATGATATTG+TGG - chr2_2:56325565-56325584 Msa0259340:CDS 30.0%
TAGTTTGAAGAAGCAATGTA+CGG - chr2_2:56325609-56325628 Msa0259340:CDS 30.0%
ATTCAAGAAAACAGAGAGAT+AGG - chr2_2:56325695-56325714 Msa0259340:CDS 30.0%
ATTGCCATAGAAGATTGTTT+AGG - chr2_2:56325792-56325811 Msa0259340:intron 30.0%
! CTTCTCTGATTTTTGTACAT+AGG - chr2_2:56325824-56325843 Msa0259340:CDS 30.0%
!! TTCCAAAAGTGTACTTCTTT+TGG - chr2_2:56325876-56325895 Msa0259340:CDS 30.0%
GAAGAAAAGTAAAAGGAGAA+AGG + chr2_2:56326059-56326078 None:intergenic 30.0%
!! CACTGTAGAGAATTGATTTT+GGG + chr2_2:56326243-56326262 None:intergenic 30.0%
!!! TTTTTGGCTAGAATTGCTTT+TGG + chr2_2:56326266-56326285 None:intergenic 30.0%
AGAGATGAAAGAATTTGGAG+GGG + chr2_2:56323053-56323072 None:intergenic 35.0%
GAGAGATGAAAGAATTTGGA+GGG + chr2_2:56323054-56323073 None:intergenic 35.0%
AGAGAGATGAAAGAATTTGG+AGG + chr2_2:56323055-56323074 None:intergenic 35.0%
GGAAGAGAGATGAAAGAATT+TGG + chr2_2:56323058-56323077 None:intergenic 35.0%
!! GATTTTGAAGGTAGGGTTTT+TGG + chr2_2:56323079-56323098 None:intergenic 35.0%
! GAAAAGGAAAGCGATTTTGA+AGG + chr2_2:56323091-56323110 None:intergenic 35.0%
! GGTTGTAACTGTTGCTTAAA+CGG + chr2_2:56323230-56323249 None:intergenic 35.0%
ACGGTACAAATTTGAAGATG+GGG + chr2_2:56323251-56323270 None:intergenic 35.0%
GACGGTACAAATTTGAAGAT+GGG + chr2_2:56323252-56323271 None:intergenic 35.0%
AGACGGTACAAATTTGAAGA+TGG + chr2_2:56323253-56323272 None:intergenic 35.0%
GAATCGGTTAAATCAAACGT+TGG + chr2_2:56323438-56323457 None:intergenic 35.0%
AATTTCTCAAACGGAACTTC+CGG + chr2_2:56323573-56323592 None:intergenic 35.0%
CCAACACGAAATTTCTCAAA+CGG + chr2_2:56323582-56323601 None:intergenic 35.0%
CGTTTGAGAAATTTCGTGTT+GGG - chr2_2:56323580-56323599 Msa0259340:three_prime_UTR 35.0%
! ACATGCTTTGGTTGTTGTTA+AGG - chr2_2:56323629-56323648 Msa0259340:three_prime_UTR 35.0%
! CTTTGGTTGTTGTTAAGGAT+AGG - chr2_2:56323634-56323653 Msa0259340:three_prime_UTR 35.0%
TTGTTAAGGATAGGACATTG+TGG - chr2_2:56323643-56323662 Msa0259340:three_prime_UTR 35.0%
GTAGGAAAATAATGTTCCTC+AGG + chr2_2:56323711-56323730 None:intergenic 35.0%
! TTTTCCTACGTTGTTGTCTA+TGG - chr2_2:56323722-56323741 Msa0259340:three_prime_UTR 35.0%
TTACCAATGTGAATTGGACT+GGG - chr2_2:56323775-56323794 Msa0259340:three_prime_UTR 35.0%
! GAAATTTGTTCCTGATTGCT+TGG - chr2_2:56323902-56323921 Msa0259340:intron 35.0%
TCAAAGATTGAAACTTTGGG+GGG - chr2_2:56323958-56323977 Msa0259340:intron 35.0%
!!! ACACTCCTTGATGTTTTTAG+GGG - chr2_2:56324182-56324201 Msa0259340:intron 35.0%
ACAAACCCCTAAAAACATCA+AGG + chr2_2:56324190-56324209 None:intergenic 35.0%
CAATCAATGCATTGCAAGAT+CGG + chr2_2:56324420-56324439 None:intergenic 35.0%
TTGTGGTGAGAAAATGGTTT+AGG - chr2_2:56324557-56324576 Msa0259340:intron 35.0%
! GTGTTCTGAATGTCAAAACA+TGG - chr2_2:56324587-56324606 Msa0259340:intron 35.0%
!! ACATGGTGCTAGAATCTTTT+AGG - chr2_2:56324604-56324623 Msa0259340:intron 35.0%
CAGAATTTAAACTCACATCG+TGG + chr2_2:56324706-56324725 None:intergenic 35.0%
TATGTGGTATTCATGCTTTG+TGG - chr2_2:56325004-56325023 Msa0259340:intron 35.0%
CATGCTTTGTGGTGAAAAAA+TGG - chr2_2:56325015-56325034 Msa0259340:intron 35.0%
GAAATGGCTAGAATTGTAGT+TGG - chr2_2:56325063-56325082 Msa0259340:intron 35.0%
CAGGTCTTCATATCTATATC+AGG + chr2_2:56325146-56325165 None:intergenic 35.0%
AGATATGAAGACCTGATTAG+TGG - chr2_2:56325151-56325170 Msa0259340:intron 35.0%
GATATGAAGACCTGATTAGT+GGG - chr2_2:56325152-56325171 Msa0259340:intron 35.0%
! GACCTACTCACCTAAATTTT+TGG - chr2_2:56325242-56325261 Msa0259340:intron 35.0%
TTCTGTAATCAGTTTGGACT+TGG + chr2_2:56325401-56325420 None:intergenic 35.0%
ACAAAATCTAACACAAGGAC+TGG + chr2_2:56325428-56325447 None:intergenic 35.0%
TTATGGCTGAGAGATGATAT+TGG - chr2_2:56325550-56325569 Msa0259340:CDS 35.0%
ATATTGTGGCTATAGCTTGA+TGG - chr2_2:56325579-56325598 Msa0259340:CDS 35.0%
AGTTTGAAGAAGCAATGTAC+GGG - chr2_2:56325610-56325629 Msa0259340:CDS 35.0%
TGAGTAAAAAAAAGAGAGGC+AGG - chr2_2:56325725-56325744 Msa0259340:CDS 35.0%
!! GACCAAAAGAAGTACACTTT+TGG + chr2_2:56325881-56325900 None:intergenic 35.0%
! CTGTTCTATTTTCCCTTTTC+TGG - chr2_2:56326009-56326028 Msa0259340:CDS 35.0%
AAAGTAAAAGGAGAAAGGGT+AGG + chr2_2:56326054-56326073 None:intergenic 35.0%
AGTACTACTCCATCTTATAG+TGG - chr2_2:56326133-56326152 Msa0259340:CDS 35.0%
AGTATCAGATTCCTTTCCTT+AGG - chr2_2:56326182-56326201 Msa0259340:intron 35.0%
GTATCAGATTCCTTTCCTTA+GGG - chr2_2:56326183-56326202 Msa0259340:intron 35.0%
!! GCACTGTAGAGAATTGATTT+TGG + chr2_2:56326244-56326263 None:intergenic 35.0%
!! TGAACCAAACACGTTGTTTT+TGG + chr2_2:56326282-56326301 None:intergenic 35.0%
AGCTAGGATTTATAGCTTCA+TGG + chr2_2:56326343-56326362 None:intergenic 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG + chr2_2:56326359-56326378 None:intergenic 35.0%
AAACCTATACACGTTGTTCA+AGG + chr2_2:56326390-56326409 None:intergenic 35.0%
GGGTGTAGAATGTGAAATAG+CGG + chr2_2:56323013-56323032 None:intergenic 40.0%
!! GGAAAGCGATTTTGAAGGTA+GGG + chr2_2:56323086-56323105 None:intergenic 40.0%
!! AGGAAAGCGATTTTGAAGGT+AGG + chr2_2:56323087-56323106 None:intergenic 40.0%
AAAGAAGAGATTCCAGAGAG+GGG + chr2_2:56323139-56323158 None:intergenic 40.0%
GAAAGAAGAGATTCCAGAGA+GGG + chr2_2:56323140-56323159 None:intergenic 40.0%
TGAAAGAAGAGATTCCAGAG+AGG + chr2_2:56323141-56323160 None:intergenic 40.0%
! TGTAACTGTTGCTTAAACGG+AGG + chr2_2:56323227-56323246 None:intergenic 40.0%
TTTCAACCGAACACCGAATT+GGG + chr2_2:56323469-56323488 None:intergenic 40.0%
ATTTCAACCGAACACCGAAT+TGG + chr2_2:56323470-56323489 None:intergenic 40.0%
TCAACAATGGTCCTAGGTTA+TGG - chr2_2:56323511-56323530 Msa0259340:three_prime_UTR 40.0%
!! TAGGTTATGGAAGCGTTACA+CGG - chr2_2:56323524-56323543 Msa0259340:three_prime_UTR 40.0%
CCGTTTGAGAAATTTCGTGT+TGG - chr2_2:56323579-56323598 Msa0259340:three_prime_UTR 40.0%
TTAAGGATAGGACATTGTGG+AGG - chr2_2:56323646-56323665 Msa0259340:three_prime_UTR 40.0%
GACATTGTGGAGGAAGTTTA+AGG - chr2_2:56323656-56323675 Msa0259340:three_prime_UTR 40.0%
CAGGATAACACTCATCATCA+CGG + chr2_2:56323692-56323711 None:intergenic 40.0%
! TGATGATGAGTGTTATCCTG+AGG - chr2_2:56323692-56323711 Msa0259340:three_prime_UTR 40.0%
TTGTCTATGGAGGATTCTGA+TGG - chr2_2:56323735-56323754 Msa0259340:three_prime_UTR 40.0%
CTTACCAATGTGAATTGGAC+TGG - chr2_2:56323774-56323793 Msa0259340:three_prime_UTR 40.0%
! AATTGGACTGGGACTGTTAA+TGG - chr2_2:56323786-56323805 Msa0259340:three_prime_UTR 40.0%
GCAATCAGGAACAAATTTCC+TGG + chr2_2:56323901-56323920 None:intergenic 40.0%
ATCAATGGTTCCAAGCAATC+AGG + chr2_2:56323915-56323934 None:intergenic 40.0%
TGATTGCTTGGAACCATTGA+TGG - chr2_2:56323914-56323933 Msa0259340:intron 40.0%
GATTGCTTGGAACCATTGAT+GGG - chr2_2:56323915-56323934 Msa0259340:intron 40.0%
GATTTGGCAATACCCATCAA+TGG + chr2_2:56323930-56323949 None:intergenic 40.0%
TGGAGTTGCTTCTTAATGTG+TGG - chr2_2:56324287-56324306 Msa0259340:intron 40.0%
AGTTGCTTCTTAATGTGTGG+AGG - chr2_2:56324290-56324309 Msa0259340:intron 40.0%
! TTCTTAATGTGTGGAGGTGT+GGG - chr2_2:56324296-56324315 Msa0259340:intron 40.0%
ACACTCACTAGTTGACCATA+GGG + chr2_2:56324331-56324350 None:intergenic 40.0%
TACACTCACTAGTTGACCAT+AGG + chr2_2:56324332-56324351 None:intergenic 40.0%
TATGGTCAACTAGTGAGTGT+AGG - chr2_2:56324331-56324350 Msa0259340:intron 40.0%
TAGTGAGTGTAGGTGAATCT+CGG - chr2_2:56324341-56324360 Msa0259340:intron 40.0%
! GATCTGTTGCTGATTACAGA+GGG - chr2_2:56324516-56324535 Msa0259340:intron 40.0%
!! TGGTGCTAGAATCTTTTAGG+TGG - chr2_2:56324607-56324626 Msa0259340:intron 40.0%
GAGTAGATGCTAACTACAGT+TGG - chr2_2:56324652-56324671 Msa0259340:intron 40.0%
TGAGCTGTATCCTTACCAAT+CGG + chr2_2:56324679-56324698 None:intergenic 40.0%
! ATCTCTGGTGCTAGAATCTT+AGG - chr2_2:56324766-56324785 Msa0259340:intron 40.0%
! TCGAGTTGCTTCTTATTGTG+TGG - chr2_2:56324891-56324910 Msa0259340:intron 40.0%
AGTTGCTTCTTATTGTGTGG+TGG - chr2_2:56324894-56324913 Msa0259340:intron 40.0%
! AACTAGAGTACTAGATGCTG+AGG - chr2_2:56325106-56325125 Msa0259340:intron 40.0%
TTGCAGATTACCCACTAATC+AGG + chr2_2:56325165-56325184 None:intergenic 40.0%
!! ACCTATGACAGCGCTTTTTA+AGG - chr2_2:56325187-56325206 Msa0259340:intron 40.0%
!! ACCTTAAAAAGCGCTGTCAT+AGG + chr2_2:56325191-56325210 None:intergenic 40.0%
GAAAAAACTAGAGTGGATGG+TGG - chr2_2:56325275-56325294 Msa0259340:intron 40.0%
!! TAGAGTGGATGGTGGATATT+GGG - chr2_2:56325283-56325302 Msa0259340:intron 40.0%
AGTGTTATGCTTATGGACAG+TGG - chr2_2:56325320-56325339 Msa0259340:intron 40.0%
GGCAAGTTCTGTAATCAGTT+TGG + chr2_2:56325407-56325426 None:intergenic 40.0%
TCAGAGAGTTTCCGGTATAT+AGG + chr2_2:56325642-56325661 None:intergenic 40.0%
ATATACCGGAAACTCTCTGA+TGG - chr2_2:56325642-56325661 Msa0259340:CDS 40.0%
GGTGCTCTTCTATATTCAGT+TGG - chr2_2:56325746-56325765 Msa0259340:intron 40.0%
ATCAATGCTACCTCATGTTC+AGG + chr2_2:56325922-56325941 None:intergenic 40.0%
TTGCAGAATGCACAAGCAAT+TGG + chr2_2:56325973-56325992 None:intergenic 40.0%
TGGAATTAGGAGCCAGAAAA+GGG + chr2_2:56326024-56326043 None:intergenic 40.0%
ATGGAATTAGGAGCCAGAAA+AGG + chr2_2:56326025-56326044 None:intergenic 40.0%
!! TTTCTGGCTCCTAATTCCAT+TGG - chr2_2:56326025-56326044 Msa0259340:CDS 40.0%
CTAGAATTGCTTCTCAGAAG+TGG + chr2_2:56326220-56326239 None:intergenic 40.0%
CTAGCCAAAAACAACGTGTT+TGG - chr2_2:56326275-56326294 Msa0259340:CDS 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG + chr2_2:56326326-56326345 None:intergenic 40.0%
! GCTTCATGGAGAATTGCTTT+TGG + chr2_2:56326329-56326348 None:intergenic 40.0%
TCTCCTTGAACAACGTGTAT+AGG - chr2_2:56326384-56326403 Msa0259340:CDS 40.0%
! GTGAAATAGCGGTGTTGAAG+AGG + chr2_2:56323002-56323021 None:intergenic 45.0%
! GCACGGTAGGTTTTCTTAGA+CGG + chr2_2:56323270-56323289 None:intergenic 45.0%
AGATTAAAGTGGGGGAAGCA+CGG + chr2_2:56323287-56323306 None:intergenic 45.0%
GGATCGCTGAAGCAAGTAAA+CGG + chr2_2:56323320-56323339 None:intergenic 45.0%
! GAATTGGGTCGATTCCGAAT+CGG + chr2_2:56323454-56323473 None:intergenic 45.0%
GATTCGGAATCGACCCAATT+CGG - chr2_2:56323453-56323472 Msa0259340:three_prime_UTR 45.0%
!! AATCGACCCAATTCGGTGTT+CGG - chr2_2:56323460-56323479 Msa0259340:three_prime_UTR 45.0%
GTGTAACGCTTCCATAACCT+AGG + chr2_2:56323525-56323544 None:intergenic 45.0%
CACTCATCATCACGGTAACA+AGG + chr2_2:56323684-56323703 None:intergenic 45.0%
TCCTACGTTGTTGTCTATGG+AGG - chr2_2:56323725-56323744 Msa0259340:three_prime_UTR 45.0%
TCCTCCATAGACAACAACGT+AGG + chr2_2:56323729-56323748 None:intergenic 45.0%
!! GAGGATTCTGATGGTGTTAC+TGG - chr2_2:56323744-56323763 Msa0259340:three_prime_UTR 45.0%
AGTCCCAGTCCAATTCACAT+TGG + chr2_2:56323781-56323800 None:intergenic 45.0%
!!! CGGAGAGTTTTTTGTTTGCC+AGG - chr2_2:56323880-56323899 Msa0259340:exon 45.0%
CTTCTTAATGTGTGGAGGTG+TGG - chr2_2:56324295-56324314 Msa0259340:intron 45.0%
! TGTGGGAAATGGATTCCCTA+TGG - chr2_2:56324313-56324332 Msa0259340:intron 45.0%
CAATGCATTGCAAGATCGGA+GGG + chr2_2:56324416-56324435 None:intergenic 45.0%
TCAATGCATTGCAAGATCGG+AGG + chr2_2:56324417-56324436 None:intergenic 45.0%
GATTGAGTGACTGCAGAATC+CGG - chr2_2:56324435-56324454 Msa0259340:intron 45.0%
! GGATCTGTTGCTGATTACAG+AGG - chr2_2:56324515-56324534 Msa0259340:intron 45.0%
CTAACTACAGTTGGTCCGAT+TGG - chr2_2:56324661-56324680 Msa0259340:intron 45.0%
TACAGTTGGTCCGATTGGTA+AGG - chr2_2:56324666-56324685 Msa0259340:intron 45.0%
! TCTGGTGCTAGAATCTTAGG+TGG - chr2_2:56324769-56324788 Msa0259340:intron 45.0%
TGCTTCTTATTGTGTGGTGG+TGG - chr2_2:56324897-56324916 Msa0259340:intron 45.0%
! TGGGGTTCTGTTGCTGATTA+TGG - chr2_2:56324960-56324979 Msa0259340:intron 45.0%
GGTGTGACATGTCTTGATCT+TGG - chr2_2:56325208-56325227 Msa0259340:intron 45.0%
GACATGTCTTGATCTTGGTG+AGG - chr2_2:56325213-56325232 Msa0259340:intron 45.0%
CTTGATCTTGGTGAGGTTCT+AGG - chr2_2:56325220-56325239 Msa0259340:intron 45.0%
!! CTAGAGTGGATGGTGGATAT+TGG - chr2_2:56325282-56325301 Msa0259340:intron 45.0%
TTGTGGCTATAGCTTGATGG+CGG - chr2_2:56325582-56325601 Msa0259340:CDS 45.0%
ACGGGTCACAACCTATATAC+CGG - chr2_2:56325628-56325647 Msa0259340:CDS 45.0%
! TCAGTTGGTGCAATGCAAGT+TGG - chr2_2:56325761-56325780 Msa0259340:intron 45.0%
TGAGATGTTGCCTGAACATG+AGG - chr2_2:56325909-56325928 Msa0259340:CDS 45.0%
GTAAAAGGAGAAAGGGTAGG+CGG + chr2_2:56326051-56326070 None:intergenic 45.0%
CATGTGATCACTGTCTTTCG+TGG - chr2_2:56326101-56326120 Msa0259340:CDS 45.0%
TCTCAGAAGTGGAACCAAAC+AGG + chr2_2:56326209-56326228 None:intergenic 45.0%
! AGGGGTGTGAAGAGGAAGAA+GGG + chr2_2:56323035-56323054 None:intergenic 50.0%
! GAATTTGGAGGGGTGTGAAG+AGG + chr2_2:56323043-56323062 None:intergenic 50.0%
!! GATCGGTGTTGGTGAGGAAA+AGG + chr2_2:56323107-56323126 None:intergenic 50.0%
!! AATGGAGATCGGTGTTGGTG+AGG + chr2_2:56323113-56323132 None:intergenic 50.0%
GGTGAAATGGAGATCGGTGT+TGG + chr2_2:56323118-56323137 None:intergenic 50.0%
GAGAGGGGTGAAATGGAGAT+CGG + chr2_2:56323124-56323143 None:intergenic 50.0%
ATCTCCATTTCACCCCTCTC+TGG - chr2_2:56323124-56323143 Msa0259340:three_prime_UTR 50.0%
GATTCCAGAGAGGGGTGAAA+TGG + chr2_2:56323131-56323150 None:intergenic 50.0%
!! AAGCATTGGAAGCATCGTCG+AGG + chr2_2:56323341-56323360 None:intergenic 50.0%
CCATCCTCATACGTATCAGC+CGG - chr2_2:56323809-56323828 Msa0259340:three_prime_UTR 50.0%
TGTCACCGGAGCTTATTCTC+CGG - chr2_2:56323838-56323857 Msa0259340:three_prime_UTR 50.0%
CTCAACCGGAGAATAAGCTC+CGG + chr2_2:56323846-56323865 None:intergenic 50.0%
! ATGTGTGGAGGTGTGGGAAA+TGG - chr2_2:56324302-56324321 Msa0259340:intron 50.0%
CATTGCAAGATCGGAGGGTA+CGG + chr2_2:56324411-56324430 None:intergenic 50.0%
TCGGTCCATCAGAGAGTTTC+CGG + chr2_2:56325650-56325669 None:intergenic 50.0%
TCCTTTCCTTAGGGCCTGTT+TGG - chr2_2:56326192-56326211 Msa0259340:intron 50.0%
ACCAAACAGGCCCTAAGGAA+AGG + chr2_2:56326196-56326215 None:intergenic 50.0%
GGGTGTGAAGAGGAAGAAGG+GGG + chr2_2:56323033-56323052 None:intergenic 55.0%
GGGGTGTGAAGAGGAAGAAG+GGG + chr2_2:56323034-56323053 None:intergenic 55.0%
! GAGGGGTGTGAAGAGGAAGA+AGG + chr2_2:56323036-56323055 None:intergenic 55.0%
! TAAAGTGGGGGAAGCACGGT+AGG + chr2_2:56323283-56323302 None:intergenic 55.0%
! CGTGGCGGAGATTAAAGTGG+GGG + chr2_2:56323295-56323314 None:intergenic 55.0%
! GCGTGGCGGAGATTAAAGTG+GGG + chr2_2:56323296-56323315 None:intergenic 55.0%
! CGCGTGGCGGAGATTAAAGT+GGG + chr2_2:56323297-56323316 None:intergenic 55.0%
TGAAGCAAGTAAACGGCGCG+TGG + chr2_2:56323313-56323332 None:intergenic 55.0%
TGGACGTTACGCGATGATGC+CGG - chr2_2:56323551-56323570 Msa0259340:three_prime_UTR 55.0%
CCGGCTGATACGTATGAGGA+TGG + chr2_2:56323812-56323831 None:intergenic 55.0%
TCCTCATACGTATCAGCCGG+AGG - chr2_2:56323812-56323831 Msa0259340:three_prime_UTR 55.0%
TCCTCCGGCTGATACGTATG+AGG + chr2_2:56323816-56323835 None:intergenic 55.0%
GGTAGGCGGCCAATGGAATT+AGG + chr2_2:56326037-56326056 None:intergenic 55.0%
GTGGAACCAAACAGGCCCTA+AGG + chr2_2:56326201-56326220 None:intergenic 55.0%
! TGCTTAAACGGAGGCGCGTG+AGG + chr2_2:56323218-56323237 None:intergenic 60.0%
! GCGCGTGGCGGAGATTAAAG+TGG + chr2_2:56323298-56323317 None:intergenic 60.0%
AGCAAGTAAACGGCGCGTGG+CGG + chr2_2:56323310-56323329 None:intergenic 60.0%
!! TCAGCCGGAGGAAGTGTCAC+CGG - chr2_2:56323824-56323843 Msa0259340:three_prime_UTR 60.0%
AGCTCCGGTGACACTTCCTC+CGG + chr2_2:56323831-56323850 None:intergenic 60.0%
GTGACTGCAGAATCCGGCTC+CGG - chr2_2:56324441-56324460 Msa0259340:intron 60.0%
GAGAAAGGGTAGGCGGCCAA+TGG + chr2_2:56326044-56326063 None:intergenic 60.0%
GGTTAACGCGCGGGTCGGAA+TGG + chr2_2:56323197-56323216 None:intergenic 65.0%
CGTGAGGTTAACGCGCGGGT+CGG + chr2_2:56323202-56323221 None:intergenic 65.0%
AGGCGCGTGAGGTTAACGCG+CGG + chr2_2:56323207-56323226 None:intergenic 65.0%
!! TGGAAGCGTTACACGGCGCG+TGG - chr2_2:56323531-56323550 Msa0259340:three_prime_UTR 65.0%
ACTGCAGAATCCGGCTCCGG+TGG - chr2_2:56324444-56324463 Msa0259340:intron 65.0%
AGAATCCGGCTCCGGTGGTG+TGG - chr2_2:56324449-56324468 Msa0259340:intron 65.0%
GAATCCGGCTCCGGTGGTGT+GGG - chr2_2:56324450-56324469 Msa0259340:intron 65.0%
ACTTCGCACGCCCACACCAC+CGG + chr2_2:56324463-56324482 None:intergenic 65.0%
GGCGCGTGAGGTTAACGCGC+GGG + chr2_2:56323206-56323225 None:intergenic 70.0%
CACGCCCACACCACCGGAGC+CGG + chr2_2:56324457-56324476 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56322989 56326451 56322989 ID=Msa0259340;Name=Msa0259340
chr2_2 mRNA 56322989 56326451 56322989 ID=Msa0259340-mRNA-1;Parent=Msa0259340;Name=Msa0259340-mRNA-1;_AED=0.12;_eAED=0.23;_QI=0|0|0.16|1|0|0|6|892|301
chr2_2 exon 56322989 56323919 56322989 ID=Msa0259340-mRNA-1:exon:17066;Parent=Msa0259340-mRNA-1
chr2_2 exon 56325490 56325538 56325490 ID=Msa0259340-mRNA-1:exon:17065;Parent=Msa0259340-mRNA-1
chr2_2 exon 56325548 56325762 56325548 ID=Msa0259340-mRNA-1:exon:17064;Parent=Msa0259340-mRNA-1
chr2_2 exon 56325802 56325943 56325802 ID=Msa0259340-mRNA-1:exon:17063;Parent=Msa0259340-mRNA-1
chr2_2 exon 56325959 56326198 56325959 ID=Msa0259340-mRNA-1:exon:17062;Parent=Msa0259340-mRNA-1
chr2_2 exon 56326231 56326451 56326231 ID=Msa0259340-mRNA-1:exon:17061;Parent=Msa0259340-mRNA-1
chr2_2 CDS 56326231 56326451 56326231 ID=Msa0259340-mRNA-1:cds;Parent=Msa0259340-mRNA-1
chr2_2 CDS 56325959 56326198 56325959 ID=Msa0259340-mRNA-1:cds;Parent=Msa0259340-mRNA-1
chr2_2 CDS 56325802 56325943 56325802 ID=Msa0259340-mRNA-1:cds;Parent=Msa0259340-mRNA-1
chr2_2 CDS 56325548 56325762 56325548 ID=Msa0259340-mRNA-1:cds;Parent=Msa0259340-mRNA-1
chr2_2 CDS 56325490 56325538 56325490 ID=Msa0259340-mRNA-1:cds;Parent=Msa0259340-mRNA-1
chr2_2 CDS 56323881 56323919 56323881 ID=Msa0259340-mRNA-1:cds;Parent=Msa0259340-mRNA-1
chr2_2 three_prime_UTR 56322989 56323880 56322989 ID=Msa0259340-mRNA-1:three_prime_utr;Parent=Msa0259340-mRNA-1
Gene Sequence

>Msa0259340

ATGACATCAACCTCTTCAACACCGCTATTTCACATTCTACACCCCCTTCTTCCTCTTCACACCCCTCCAAATTCTTTCATCTCTCTTCCAAAAACCCTACCTTCAAAATCGCTTTCCTTTTCCTCACCAACACCGATCTCCATTTCACCCCTCTCTGGAATCTCTTCTTTCAAACAACCCCATCTAAATTATTCAATGTTTATGTCCATTCCGACCCGCGCTTACAACCCCATCTTCAAATTTGTACCGTCTAAGAAAACCTACCGTGCTTCCCCCACTTTAATCTCCGCCACGCGCCGTTTACTTGCTTCAGCGATCCTCGACGATGCTTCCAATGCTTATTTCATCGTTCTTTCGCAATATTGTATCCCTCTTCATTCGTTTGATTATATCTATAAATCACTTTTTCTTTCACCAACGTTTGATTTAACCGATTCGGAATCGACCCAATTCGGTGTTCGCTTTATTGAAATTATCAACAATGGTCCTAGGTTATGGAAGCGTTACACGGCGCGTGGACGTTACGCGATGATGCCGGAAGTTCCGTTTGAGAAATTTCGTGTTGGGTCGCAGTTTTTTACTTTGACAAGAAAACATGCTTTGGTTCCTTGTTACCGTGATGATGAGTGTTATCCTGAGGAACATTATTTTCCTACGTTGTTGTCTATGGAGGATTCTGATGGTGTTACTGGCTATACACTTACCAATGTGAATTGGACTGGGACTGTTAATGGCCATCCTCATACGTATCAGCCGGAGGAAGTGTCACCGGAGCTTATTCTCCGGTTGAGAAAGTCGAATAATTCGGAGAGTTTTTTGAAATTTGTTCCTGATTGCTTGGAACCATTGATGGGTATTGCCAAATCTATGAAAAAGTTCAGTGAATGTGAAGATATTTATGGCTGA
Protein sequence

>Msa0259340

MTSTSSTPLFHILHPLLPLHTPPNSFISLPKTLPSKSLSFSSPTPISISPLSGISSFKQPHLNYSMFMSIPTRAYNPIFKFVPSKKTYRASPTLISATRRLLASAILDDASNAYFIVLSQYCIPLHSFDYIYKSLFLSPTFDLTDSESTQFGVRFIEIINNGPRLWKRYTARGRYAMMPEVPFEKFRVGSQFFTLTRKHALVPCYRDDECYPEEHYFPTLLSMEDSDGVTGYTLTNVNWTGTVNGHPHTYQPEEVSPELILRLRKSNNSESFLKFVPDCLEPLMGIAKSMKKFSECEDIYG*