AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259660 MtrunA17_Chr2g0333781 90.351 342 9 2 1 318 1 342 0.0 621
Msa0259660 MtrunA17_Chr4g0001321 73.874 333 61 3 7 313 3 335 4.14e-173 483
Msa0259660 MtrunA17_Chr3g0077231 43.827 324 150 7 14 307 1 322 1.36e-86 263
Msa0259660 MtrunA17_Chr3g0077221 45.342 322 144 7 11 302 2 321 3.27e-86 262
Msa0259660 MtrunA17_Chr5g0431311 42.006 319 155 4 17 306 3 320 1.24e-81 250
Msa0259660 MtrunA17_Chr4g0039311 44.795 317 143 8 16 302 8 322 1.77e-81 249
Msa0259660 MtrunA17_Chr4g0039321 43.925 321 148 9 12 302 2 320 1.43e-79 245
Msa0259660 MtrunA17_Chr4g0002661 42.320 319 152 4 15 305 9 323 1.73e-78 242
Msa0259660 MtrunA17_Chr8g0364051 42.236 322 153 8 16 307 5 323 2.98e-75 234
Msa0259660 MtrunA17_Chr3g0106111 40.190 316 159 4 17 303 3 317 3.19e-74 231
Msa0259660 MtrunA17_Chr8g0363831 42.587 317 149 7 16 302 6 319 4.08e-74 231
Msa0259660 MtrunA17_Chr5g0423551 40.566 318 156 8 19 305 4 319 3.37e-73 228
Msa0259660 MtrunA17_Chr4g0002961 42.500 320 152 5 15 306 9 324 1.36e-70 222
Msa0259660 MtrunA17_Chr2g0291541 39.130 322 160 7 17 305 8 326 5.17e-66 210
Msa0259660 MtrunA17_Chr1g0155411 37.538 325 162 11 17 305 6 325 1.27e-65 209
Msa0259660 MtrunA17_Chr2g0331211 36.991 319 167 6 19 306 5 320 1.93e-63 204
Msa0259660 MtrunA17_Chr1g0155431 37.730 326 162 10 16 305 5 325 7.13e-63 202
Msa0259660 MtrunA17_Chr7g0245741 32.308 325 176 12 19 305 8 326 1.19e-47 162
Msa0259660 MtrunA17_Chr7g0245671 34.663 326 170 14 19 305 8 329 1.09e-46 160
Msa0259660 MtrunA17_Chr4g0042101 33.533 334 169 10 20 305 25 353 1.81e-46 160
Msa0259660 MtrunA17_Chr7g0245731 33.025 324 175 12 19 305 58 376 4.31e-46 160
Msa0259660 MtrunA17_Chr4g0048961 32.544 338 184 9 7 303 2 336 1.69e-45 157
Msa0259660 MtrunA17_Chr7g0245641 34.049 326 172 14 19 305 45 366 1.89e-45 158
Msa0259660 MtrunA17_Chr7g0245691 31.707 328 178 11 19 305 8 330 3.47e-43 151
Msa0259660 MtrunA17_Chr7g0245631 31.579 323 181 13 19 305 8 326 2.92e-37 135
Msa0259660 MtrunA17_Chr4g0010991 30.982 326 184 12 18 305 7 329 3.90e-36 132
Msa0259660 MtrunA17_Chr7g0245711 30.389 283 157 10 58 305 11 288 5.04e-32 120
Msa0259660 MtrunA17_Chr2g0282001 29.290 338 187 9 19 307 7 341 9.45e-30 115
Msa0259660 MtrunA17_Chr5g0411071 28.664 307 177 10 9 285 2 296 3.56e-29 113
Msa0259660 MtrunA17_Chr6g0450211 30.667 300 164 10 19 281 55 347 7.62e-29 114
Msa0259660 MtrunA17_Chr2g0281991 28.107 338 191 10 19 307 8 342 1.99e-26 107
Msa0259660 MtrunA17_Chr7g0275521 28.302 318 172 12 19 285 7 319 2.52e-26 106
Msa0259660 MtrunA17_Chr2g0282011 37.241 145 83 5 19 155 8 152 9.04e-21 91.3
Msa0259660 MtrunA17_Chr4g0039331 34.615 156 72 4 104 258 10 136 2.93e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259660 AT1G15950.3 70.126 318 72 1 12 306 6 323 6.78e-155 437
Msa0259660 AT1G15950.1 70.126 318 72 1 12 306 6 323 6.78e-155 437
Msa0259660 AT1G80820.1 65.951 326 88 1 14 316 3 328 1.45e-150 426
Msa0259660 AT1G15950.2 70.033 307 69 1 12 295 6 312 1.49e-147 418
Msa0259660 AT1G15950.4 70.182 275 59 1 12 263 6 280 2.31e-127 365
Msa0259660 AT1G15950.6 70.849 271 56 1 12 259 6 276 2.68e-127 365
Msa0259660 AT1G15950.5 70.741 270 56 1 12 258 6 275 2.32e-126 363
Msa0259660 AT1G80820.2 67.286 269 65 1 14 259 3 271 8.01e-121 348
Msa0259660 AT1G15950.7 70.222 225 44 1 105 306 1 225 3.43e-99 292
Msa0259660 AT5G19440.1 45.201 323 145 7 11 303 2 322 9.65e-90 271
Msa0259660 AT5G58490.1 43.574 319 150 4 17 306 7 324 4.73e-82 251
Msa0259660 AT1G51410.1 43.252 326 153 7 12 307 2 325 4.22e-81 249
Msa0259660 AT2G02400.1 39.875 321 161 5 14 305 1 318 7.61e-76 235
Msa0259660 AT1G09510.1 42.320 319 148 8 16 302 5 319 2.07e-73 229
Msa0259660 AT1G66800.1 44.654 318 138 10 16 302 5 315 2.51e-73 229
Msa0259660 AT2G33590.1 43.730 311 142 6 19 300 9 315 7.44e-73 228
Msa0259660 AT4G35420.1 39.623 318 159 8 19 306 8 322 1.10e-68 217
Msa0259660 AT1G09490.1 40.187 321 158 9 16 305 5 322 6.67e-68 215
Msa0259660 AT1G76470.1 40.000 320 159 4 17 305 5 322 1.20e-67 214
Msa0259660 AT1G68540.1 38.801 317 161 6 21 305 6 321 1.27e-67 214
Msa0259660 AT1G09480.2 39.815 324 155 9 16 305 5 322 1.72e-67 214
Msa0259660 AT1G09480.1 39.815 324 155 9 16 305 52 369 3.31e-67 215
Msa0259660 AT1G09500.1 40.557 323 151 9 16 302 5 322 2.18e-65 209
Msa0259660 AT1G09500.3 41.935 279 122 8 16 259 5 278 1.05e-60 195
Msa0259660 AT5G42800.1 37.015 335 177 11 17 318 6 339 4.33e-59 194
Msa0259660 AT1G25460.1 36.825 315 168 5 21 305 6 319 8.38e-59 192
Msa0259660 AT2G33600.1 40.514 311 152 6 19 300 9 315 1.91e-57 188
Msa0259660 AT1G09490.2 37.193 285 146 8 51 305 10 291 1.35e-49 167
Msa0259660 AT1G09500.2 37.979 287 138 8 51 302 7 288 3.60e-47 160
Msa0259660 AT4G27250.1 33.962 318 156 10 18 285 12 325 1.29e-46 161
Msa0259660 AT4G27250.2 34.727 311 153 12 18 285 12 315 3.19e-45 157
Msa0259660 AT2G45400.1 33.333 327 176 11 19 305 40 364 1.62e-43 153
Msa0259660 AT2G45400.2 33.813 278 146 8 19 258 40 317 4.65e-39 140
Msa0259660 AT1G61720.1 28.000 325 190 9 20 303 14 335 2.71e-37 136
Msa0259660 AT2G23910.1 30.769 299 158 9 20 281 11 297 1.45e-35 130
Msa0259660 AT1G68540.2 33.175 211 116 3 119 305 5 214 6.71e-35 126
Msa0259660 AT2G23910.2 30.797 276 143 8 20 259 11 274 1.25e-34 127
Msa0259660 AT2G23910.3 31.022 274 141 8 20 257 11 272 1.51e-34 127
Msa0259660 AT4G30470.1 29.801 302 166 8 15 281 6 296 5.42e-30 116
Msa0259660 AT2G45400.3 31.190 311 172 11 33 305 1 307 8.42e-30 115
Msa0259660 AT2G23910.4 30.769 260 132 8 58 281 16 263 1.22e-27 108
Msa0259660 AT5G14700.1 29.450 309 165 12 19 281 55 356 8.44e-25 103
Msa0259660 AT2G45400.4 33.180 217 106 8 19 197 40 255 9.04e-23 95.5

Find 136 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTAACCTTTAGCAATATC+TGG 0.145493 2_2:-56919231 Msa0259660:three_prime_UTR
CGAGGAGATGTCACCGAATT+TGG 0.198738 2_2:-56918882 Msa0259660:three_prime_UTR
AGAAATGAAATGACCGTAAT+TGG 0.215325 2_2:-56919435 Msa0259660:three_prime_UTR
AGTTAAAAGTGTTTAAAATA+TGG 0.223733 2_2:-56919274 Msa0259660:three_prime_UTR
CGTGACAGTGGAATAATAAT+TGG 0.228806 2_2:+56924038 None:intergenic
CCGGTGGCTTCATCGCTTCT+TGG 0.240471 2_2:-56923860 Msa0259660:CDS
GCAGAATCTTCCTCAATTTC+CGG 0.262911 2_2:-56923906 Msa0259660:CDS
GCCATTGGTAATGGTAAATT+TGG 0.268416 2_2:+56919151 None:intergenic
TGAATTAAACTTGTTAATAA+AGG 0.280382 2_2:+56919519 None:intergenic
CTCAACATCAACACTCCTAT+TGG 0.285572 2_2:+56921395 None:intergenic
TATGAGAAACCTTCTGCTTC+TGG 0.292884 2_2:-56920582 Msa0259660:CDS
GTGACTTACTTGGTAGGAAT+TGG 0.293032 2_2:+56920483 None:intergenic
TAAGGATGACAGTAATATAA+TGG 0.297166 2_2:+56919354 None:intergenic
ATCAATTGGCGCAGTCTATA+TGG 0.300091 2_2:-56921421 Msa0259660:CDS
CACAAGCTTATGTTCATGTT+AGG 0.302408 2_2:-56920632 Msa0259660:CDS
TCTAGAGAATCTTCTTTGTT+TGG 0.306818 2_2:+56919564 None:intergenic
TTGGATACTACTATCCATTA+TGG 0.318150 2_2:+56918857 None:intergenic
CACCGAATTTGGTTCCATAA+TGG 0.318286 2_2:-56918871 Msa0259660:three_prime_UTR
TCCATTAACGGCTTCTTTAA+CGG 0.328595 2_2:+56923353 None:intergenic
TCCGTTAAAGAAGCCGTTAA+TGG 0.331782 2_2:-56923354 Msa0259660:CDS
TTCCTTCTTCTTCTTGTAAA+GGG 0.337783 2_2:+56923954 None:intergenic
TTATTAACAAGTTTAATTCA+TGG 0.338237 2_2:-56919516 Msa0259660:three_prime_UTR
TCAACATCAACACTCCTATT+GGG 0.340370 2_2:+56921396 None:intergenic
TTCTTGAACTTAGACAAATA+TGG 0.344050 2_2:+56919296 None:intergenic
TTTAAAATATGGGGATTGTT+TGG 0.345504 2_2:-56919263 Msa0259660:three_prime_UTR
TACTCAAGAAAATACTAATA+AGG 0.347815 2_2:+56919336 None:intergenic
TTCTTTGCTCCATTCACTGC+TGG 0.349124 2_2:+56921495 None:intergenic
ATTGTGCTTGCATTGATTGT+AGG 0.355496 2_2:+56920705 None:intergenic
AGTTGTAGTGAATCCAGTTT+TGG 0.358005 2_2:-56920748 Msa0259660:CDS
GTTAAAAGTGTTTAAAATAT+GGG 0.364039 2_2:-56919273 Msa0259660:three_prime_UTR
TAATAAAGGATGGTTGGTTT+AGG 0.367316 2_2:+56919533 None:intergenic
TTTCTTACACTATCCAATTA+CGG 0.375261 2_2:+56919422 None:intergenic
AAAGGTGACCTTGGTCTTGT+AGG 0.380163 2_2:+56919592 None:intergenic
TTGAGGTTGATGAGTCTTGC+TGG 0.381677 2_2:-56921377 Msa0259660:CDS
ATTTGGTGATAATAAATAAT+AGG 0.385633 2_2:+56919168 None:intergenic
ATCCATTATGGAACCAAATT+CGG 0.390210 2_2:+56918869 None:intergenic
GAGAAAGGCTATACTGTTAG+AGG 0.399644 2_2:-56923819 Msa0259660:CDS
TTAGCTACCTGCGAGGCTTT+AGG 0.405012 2_2:-56919476 Msa0259660:three_prime_UTR
TTGGTCTTGTAGGCTCTTAA+CGG 0.408849 2_2:+56919602 None:intergenic
ATTCCTTCTTCTTCTTGTAA+AGG 0.413305 2_2:+56923953 None:intergenic
CACATACTAAAGTACCTAAC+TGG 0.418602 2_2:-56920681 Msa0259660:CDS
TTTGGACACACAGGAGGAAA+TGG 0.419258 2_2:-56921523 Msa0259660:intron
AAGGATGACAGTAATATAAT+GGG 0.423103 2_2:+56919355 None:intergenic
TGCCGACAACAAGGTTGGCT+TGG 0.427158 2_2:-56919096 Msa0259660:three_prime_UTR
TTAACAAACTCTCGTTTACT+AGG 0.427280 2_2:-56918819 Msa0259660:three_prime_UTR
TACAATATTGTGGATGGGTT+AGG 0.428047 2_2:-56924118 Msa0259660:five_prime_UTR
TTGGATGGTTAAGCTCCTCT+TGG 0.431425 2_2:-56923841 Msa0259660:CDS
GCCGACAACAAGGTTGGCTT+GGG 0.433092 2_2:-56919095 Msa0259660:three_prime_UTR
CTTCTTTGTTTGGAATAGAA+AGG 0.435435 2_2:+56919574 None:intergenic
AGCAAAAGAAAGACTAACTT+TGG 0.443191 2_2:-56923403 Msa0259660:CDS
CAGTCTATATGGACCCCAAT+AGG 0.445142 2_2:-56921410 Msa0259660:CDS
AATGGTCCAAGAACCAAAAC+TGG 0.452263 2_2:+56920735 None:intergenic
GCGGCGGCGGTGGTAGCAGC+AGG 0.455436 2_2:+56923927 None:intergenic
GGAAGATTCTGCGGCGGCGG+TGG 0.458764 2_2:+56923917 None:intergenic
GTGACAGTGGAATAATAATT+GGG 0.458810 2_2:+56924039 None:intergenic
TGGCTTCATCGCTTCTTGGA+TGG 0.463428 2_2:-56923856 Msa0259660:CDS
TGACTTACTTGGTAGGAATT+GGG 0.464359 2_2:+56920484 None:intergenic
TTAAAATACAATATTGTGGA+TGG 0.465487 2_2:-56924124 Msa0259660:five_prime_UTR
AAAACTGAAGGATTTGGGAT+TGG 0.468538 2_2:-56919658 Msa0259660:CDS
TTAAACTTGTTAATAAAGGA+TGG 0.471619 2_2:+56919523 None:intergenic
ACAAGCTTATGTTCATGTTA+GGG 0.475300 2_2:-56920631 Msa0259660:CDS
ACTTGTTAATAAAGGATGGT+TGG 0.475707 2_2:+56919527 None:intergenic
AGGTCTTAGCTGAACCAGTT+AGG 0.475944 2_2:+56920667 None:intergenic
GACACCATGACATCCATTAA+CGG 0.478255 2_2:+56923341 None:intergenic
TCTAACCTTTAGCAATATCT+GGG 0.484776 2_2:-56919230 Msa0259660:three_prime_UTR
AATGAGTGGGATAGAGAAGA+AGG 0.485430 2_2:+56923990 None:intergenic
GATGAACTTGTTGCGGCCAT+TGG 0.485987 2_2:+56919136 None:intergenic
CTTGTTGCGGCCATTGGTAA+TGG 0.487358 2_2:+56919142 None:intergenic
GCCCAAGCCAACCTTGTTGT+CGG 0.493998 2_2:+56919094 None:intergenic
TGGATTAAAATACAATATTG+TGG 0.495329 2_2:-56924128 Msa0259660:five_prime_UTR
AAATGGGCACTTGAAAGAGT+TGG 0.499323 2_2:-56923430 Msa0259660:CDS
ATGGTGGAGCCAGCAGTGAA+TGG 0.499409 2_2:-56921504 Msa0259660:CDS
CTGACGGGGTTATCTGTAAC+GGG 0.499421 2_2:+56923303 None:intergenic
TTGGTAGGAATTGGGTACTC+AGG 0.501534 2_2:+56920492 None:intergenic
AGCGATGAAGCCACCGGCGC+CGG 0.501975 2_2:+56923866 None:intergenic
TATGGTTTCGCCGGAAATTG+AGG 0.503195 2_2:+56923896 None:intergenic
ACCGGCGCCGGTGACACATA+TGG 0.505863 2_2:+56923878 None:intergenic
TGGGATGTGGCAAAAGAGAA+AGG 0.508276 2_2:-56920780 Msa0259660:CDS
TCGGACTTTATCATGCAATT+CGG 0.508588 2_2:-56918983 Msa0259660:three_prime_UTR
ACCATATGTGTCACCGGCGC+CGG 0.511679 2_2:-56923879 Msa0259660:CDS
TACTAGGAGGCAAGCAAATG+AGG 0.517124 2_2:-56918803 Msa0259660:three_prime_UTR
GACTTTATCATGCAATTCGG+TGG 0.523799 2_2:-56918980 Msa0259660:three_prime_UTR
CTTTAACGGAGTTAAGATCA+AGG 0.524956 2_2:+56923367 None:intergenic
TGAGGAAGATTCTGCGGCGG+CGG 0.526567 2_2:+56923914 None:intergenic
TCATATAAACATTCACTCAC+TGG 0.528141 2_2:+56919627 None:intergenic
GTTAAGCTCCTCTTGGAGAA+AGG 0.529443 2_2:-56923834 Msa0259660:CDS
TTAAAAGTGTTTAAAATATG+GGG 0.530959 2_2:-56919272 Msa0259660:three_prime_UTR
AGGTGGTGATAAATTAAAGT+TGG 0.531358 2_2:+56924010 None:intergenic
ACCAAATTTACCATTACCAA+TGG 0.531493 2_2:-56919152 Msa0259660:three_prime_UTR
TTATGTTCATGTTAGGGATG+TGG 0.538028 2_2:-56920625 Msa0259660:CDS
GTTGATGTTGGAGAGGTGCT+CGG 0.540685 2_2:-56919002 Msa0259660:three_prime_UTR
GGGATGTGGCAAAAGAGAAA+GGG 0.541884 2_2:-56920779 Msa0259660:CDS
TAAAATACAATATTGTGGAT+GGG 0.542922 2_2:-56924123 Msa0259660:five_prime_UTR
TCAAGTGCCGACAACAAGGT+TGG 0.547294 2_2:-56919101 Msa0259660:three_prime_UTR
ATATGTGTCACCGGCGCCGG+TGG 0.552094 2_2:-56923876 Msa0259660:CDS
ACAATCCCAGATATTGCTAA+AGG 0.553231 2_2:+56919225 None:intergenic
TTAAGAGTGACTTACTTGGT+AGG 0.563350 2_2:+56920477 None:intergenic
TGGTAGGAATTGGGTACTCA+GGG 0.564638 2_2:+56920493 None:intergenic
GCTAGAGCCTAAAGCCTCGC+AGG 0.569596 2_2:+56919469 None:intergenic
CCAAGAAGCGATGAAGCCAC+CGG 0.571020 2_2:+56923860 None:intergenic
CTCCCTTTACAAGAAGAAGA+AGG 0.571219 2_2:-56923956 Msa0259660:five_prime_UTR
GGCGAAACCATATGTGTCAC+CGG 0.572762 2_2:-56923885 Msa0259660:CDS
AGCTTGTGTTGCATTTGCAT+AGG 0.575371 2_2:+56920647 None:intergenic
TTGGAATAGAAAGGTGACCT+TGG 0.582400 2_2:+56919583 None:intergenic
GAAGCCGTTAATGGATGTCA+TGG 0.583328 2_2:-56923345 Msa0259660:CDS
ACTGACGGGGTTATCTGTAA+CGG 0.589424 2_2:+56923302 None:intergenic
GAGTGGGATAGAGAAGAAGG+TGG 0.594227 2_2:+56923993 None:intergenic
CAACATCAACACTCCTATTG+GGG 0.595944 2_2:+56921397 None:intergenic
AGGCATCGATGAACTTGTTG+CGG 0.599246 2_2:+56919129 None:intergenic
ATAGTAGTATCCAATTCTGT+AGG 0.599500 2_2:-56918848 Msa0259660:three_prime_UTR
CAATAGGAGTGTTGATGTTG+AGG 0.599834 2_2:-56921394 Msa0259660:CDS
GATTACTTCAGCAAAGGACG+AGG 0.600213 2_2:-56918900 Msa0259660:three_prime_UTR
ACAAACTCTCGTTTACTAGG+AGG 0.604963 2_2:-56918816 Msa0259660:three_prime_UTR
GGTGACACATATGGTTTCGC+CGG 0.608771 2_2:+56923887 None:intergenic
AGAGGAACCTTGCGAAACCC+AGG 0.613164 2_2:-56923801 Msa0259660:intron
TGAACAAGCAGCATGGGATG+TGG 0.613682 2_2:-56920793 Msa0259660:intron
CAGTATAGCCTTTCTCCAAG+AGG 0.617628 2_2:+56923826 None:intergenic
GGACACACAGGAGGAAATGG+TGG 0.629666 2_2:-56921520 Msa0259660:intron
GTAGCTGATTACTTCAGCAA+AGG 0.633455 2_2:-56918906 Msa0259660:three_prime_UTR
TTGATTGTAGGTTGTAGCAA+TGG 0.640557 2_2:+56920717 None:intergenic
GAATTTCAACAAGCTCTCCA+CGG 0.644131 2_2:+56920529 None:intergenic
AGTTGAATGAATGAATGAGT+GGG 0.658721 2_2:+56923977 None:intergenic
GAAAGTGAAATTGCAATGTG+AGG 0.660697 2_2:+56924070 None:intergenic
GGGCACTTGAAAGAGTTGGA+AGG 0.662593 2_2:-56923426 Msa0259660:CDS
AAGTATCTACCAGAAGCAGA+AGG 0.665232 2_2:+56920573 None:intergenic
GGATGTGGCAAAAGAGAAAG+GGG 0.667382 2_2:-56920778 Msa0259660:CDS
GAGTTGAATGAATGAATGAG+TGG 0.674978 2_2:+56923976 None:intergenic
AGAAGCAAATGTGAGGCGCG+TGG 0.678798 2_2:-56921454 Msa0259660:CDS
TGTGGCAAAAGAGAAAGGGG+TGG 0.680248 2_2:-56920775 Msa0259660:CDS
AAGTTGGTGTGACGTGACAG+TGG 0.683204 2_2:+56924026 None:intergenic
GGAAATTGAGGAAGATTCTG+CGG 0.685599 2_2:+56923908 None:intergenic
AATTGAGGAAGATTCTGCGG+CGG 0.716984 2_2:+56923911 None:intergenic
GTTAAGAGCCTACAAGACCA+AGG 0.728061 2_2:-56919600 Msa0259660:CDS
CTGCAGCAGAAGCAAATGTG+AGG 0.739247 2_2:-56921461 Msa0259660:CDS
CCAACATCAACAAAACACAA+CGG 0.751433 2_2:+56919014 None:intergenic
GCTGAAAGTTCACTTCACCG+TGG 0.785254 2_2:-56920546 Msa0259660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAATT+TGG - chr2_2:56922804-56922823 Msa0259660:intron 0.0%
!! TATTTATGTGAATTAAATTA+AGG + chr2_2:56919178-56919197 None:intergenic 10.0%
!!! TAACATTTAACTTTTTTAAA+GGG + chr2_2:56919834-56919853 None:intergenic 10.0%
!!! ATAACATTTAACTTTTTTAA+AGG + chr2_2:56919835-56919854 None:intergenic 10.0%
!! AAATAAGAATAAGAAATAAA+AGG - chr2_2:56920937-56920956 Msa0259660:intron 10.0%
!!! TATTGATTTTATTCTTTTTT+TGG - chr2_2:56922514-56922533 Msa0259660:intron 10.0%
!! ATAAATTTAATAATTCCTTT+AGG + chr2_2:56923027-56923046 None:intergenic 10.0%
!! ATTAAATTTATAAAATCAAG+TGG - chr2_2:56923036-56923055 Msa0259660:intron 10.0%
!! TAATTCAATGTAATTATATG+CGG + chr2_2:56919329-56919348 None:intergenic 15.0%
!!! TAAATTTTACTATGTATGTA+TGG - chr2_2:56919364-56919383 Msa0259660:three_prime_UTR 15.0%
!!! AAATTTTACTATGTATGTAT+GGG - chr2_2:56919365-56919384 Msa0259660:three_prime_UTR 15.0%
!! GAATGAAAAAAATTCAATTA+AGG + chr2_2:56919689-56919708 None:intergenic 15.0%
!! ATATAATATCTTAGATATGA+TGG + chr2_2:56919905-56919924 None:intergenic 15.0%
!!! AATTTACCATATTATTTTAG+AGG + chr2_2:56919963-56919982 None:intergenic 15.0%
!!! GTAAATTTTATCAAAAGAAA+TGG - chr2_2:56919976-56919995 Msa0259660:intron 15.0%
!! AATTTACAACTAAATAATTG+AGG + chr2_2:56920613-56920632 None:intergenic 15.0%
!!! AAATACCAATTTGATTTTAT+AGG - chr2_2:56921354-56921373 Msa0259660:intron 15.0%
!!! TTTGATTTGAATTGTTAATT+TGG - chr2_2:56921389-56921408 Msa0259660:CDS 15.0%
!! AAATATGAATCAATCATTAT+TGG + chr2_2:56921739-56921758 None:intergenic 15.0%
!! AAATTTGAATATTGTAGAAT+TGG - chr2_2:56922091-56922110 Msa0259660:intron 15.0%
!! TCAAAAACATTTCATTTAAA+TGG + chr2_2:56922586-56922605 None:intergenic 15.0%
!!! TGAATTAAACTTGTTAATAA+AGG + chr2_2:56923414-56923433 None:intergenic 15.0%
!! TTATTAACAAGTTTAATTCA+TGG - chr2_2:56923414-56923433 Msa0259660:CDS 15.0%
!!! AGTTAAAAGTGTTTAAAATA+TGG - chr2_2:56923656-56923675 Msa0259660:intron 15.0%
!!! GTTAAAAGTGTTTAAAATAT+GGG - chr2_2:56923657-56923676 Msa0259660:intron 15.0%
!!! TTAAAAGTGTTTAAAATATG+GGG - chr2_2:56923658-56923677 Msa0259660:intron 15.0%
!!! ATTTGGTGATAATAAATAAT+AGG + chr2_2:56923765-56923784 None:intergenic 15.0%
!! TGGATTAAAATACAATATTG+TGG - chr2_2:56918802-56918821 Msa0259660:three_prime_UTR 20.0%
!! TTAAAATACAATATTGTGGA+TGG - chr2_2:56918806-56918825 Msa0259660:three_prime_UTR 20.0%
!! TAAAATACAATATTGTGGAT+GGG - chr2_2:56918807-56918826 Msa0259660:three_prime_UTR 20.0%
!! AAATTAATTAAAAACTGACG+GGG + chr2_2:56919644-56919663 None:intergenic 20.0%
!! GAAATTAATTAAAAACTGAC+GGG + chr2_2:56919645-56919664 None:intergenic 20.0%
!! GGAAATTAATTAAAAACTGA+CGG + chr2_2:56919646-56919665 None:intergenic 20.0%
!!! AGTAAGACTATTTTTCTTTT+TGG + chr2_2:56919746-56919765 None:intergenic 20.0%
!!! TTAGATATGATGGAATTAAA+AGG + chr2_2:56919895-56919914 None:intergenic 20.0%
!!! TCTTTTTAGGATAATAAATG+TGG - chr2_2:56920251-56920270 Msa0259660:intron 20.0%
!! TAAGAATAAGAAATAAAAGG+TGG - chr2_2:56920940-56920959 Msa0259660:intron 20.0%
!! TCTTAATACTACTACTAATA+TGG - chr2_2:56921291-56921310 Msa0259660:intron 20.0%
!! ACTTTCCTATAAAATCAAAT+TGG + chr2_2:56921362-56921381 None:intergenic 20.0%
!! AAATTAAATAAATGAAGGGA+GGG + chr2_2:56921619-56921638 None:intergenic 20.0%
!! AAAATTAAATAAATGAAGGG+AGG + chr2_2:56921620-56921639 None:intergenic 20.0%
!!! TTCAAATCGCTTTTATTTTA+GGG + chr2_2:56922073-56922092 None:intergenic 20.0%
!!! TTTCAAATCGCTTTTATTTT+AGG + chr2_2:56922074-56922093 None:intergenic 20.0%
!! ACATTTCATTTAAATGGAAA+TGG + chr2_2:56922580-56922599 None:intergenic 20.0%
!!! GTTTTAGTATTTTGCAATTT+TGG - chr2_2:56922633-56922652 Msa0259660:intron 20.0%
!!! CAAGGATTTTGATAATATTT+TGG - chr2_2:56922741-56922760 Msa0259660:intron 20.0%
!! AATTTAATAATTCCTTTAGG+TGG + chr2_2:56923024-56923043 None:intergenic 20.0%
!!! TTTTTATTTGAGAAGATATG+TGG + chr2_2:56923255-56923274 None:intergenic 20.0%
!! AAATAAAAAACTGAAGGATT+TGG - chr2_2:56923266-56923285 Msa0259660:intron 20.0%
!! AATAAAAAACTGAAGGATTT+GGG - chr2_2:56923267-56923286 Msa0259660:intron 20.0%
!!! TTAAACTTGTTAATAAAGGA+TGG + chr2_2:56923410-56923429 None:intergenic 20.0%
!! TACTCAAGAAAATACTAATA+AGG + chr2_2:56923597-56923616 None:intergenic 20.0%
!!! GTAGAATATTTTTTGTACCT+GGG + chr2_2:56919149-56919168 None:intergenic 25.0%
!!! AGTAGAATATTTTTTGTACC+TGG + chr2_2:56919150-56919169 None:intergenic 25.0%
!! ATAACGTTGTTGATAAGATT+AGG - chr2_2:56919399-56919418 Msa0259660:three_prime_UTR 25.0%
!!! CTGTTATTATATTTTGACGT+GGG - chr2_2:56919429-56919448 Msa0259660:three_prime_UTR 25.0%
!! TTTTCAGATGATCCAAAAAA+TGG - chr2_2:56919483-56919502 Msa0259660:three_prime_UTR 25.0%
! TTTCAGATGATCCAAAAAAT+GGG - chr2_2:56919484-56919503 Msa0259660:three_prime_UTR 25.0%
! GAAGAATAGAATAGAAATAG+AGG + chr2_2:56919667-56919686 None:intergenic 25.0%
!! TTTTCAATCTTCTCTTTCAA+AGG - chr2_2:56919713-56919732 Msa0259660:intron 25.0%
!!! GACTATTTTTCTTTTTGGAT+TGG + chr2_2:56919741-56919760 None:intergenic 25.0%
!!! ATATTATTTTAGAGGCTATG+TGG + chr2_2:56919955-56919974 None:intergenic 25.0%
!!! ACATAGCCTCTAAAATAATA+TGG - chr2_2:56919954-56919973 Msa0259660:intron 25.0%
! ATGTCATGTGATTATTTGAA+CGG - chr2_2:56920186-56920205 Msa0259660:intron 25.0%
! TTTCTCTATAAATAGAGACT+TGG - chr2_2:56920676-56920695 Msa0259660:CDS 25.0%
! AATAAGAAATAAAAGGTGGT+GGG - chr2_2:56920944-56920963 Msa0259660:intron 25.0%
! TGTTGAATGAAAAAAACCAT+TGG - chr2_2:56920973-56920992 Msa0259660:intron 25.0%
! TAACACGAAAACTAGTAAAA+GGG + chr2_2:56921227-56921246 None:intergenic 25.0%
! TTAACACGAAAACTAGTAAA+AGG + chr2_2:56921228-56921247 None:intergenic 25.0%
! AATTAAATAAATGAAGGGAG+GGG + chr2_2:56921618-56921637 None:intergenic 25.0%
!! TTTATTTGCTACTGATCAAT+AGG - chr2_2:56921637-56921656 Msa0259660:intron 25.0%
! AGTATTACAAGATTTGGATT+AGG - chr2_2:56921674-56921693 Msa0259660:intron 25.0%
!! AAAAAACGAGTCTAAAATCT+AGG - chr2_2:56921788-56921807 Msa0259660:intron 25.0%
!!! TTTTTTAAGAGTGACTTACT+TGG + chr2_2:56922460-56922479 None:intergenic 25.0%
!!! ATTCTTTTTTTGGCATATCA+TGG - chr2_2:56922524-56922543 Msa0259660:intron 25.0%
! TTGCAAAATACTAAAACTTG+TGG + chr2_2:56922630-56922649 None:intergenic 25.0%
!! AAGAGTATGTTGAAAAGAAT+TGG - chr2_2:56922950-56922969 Msa0259660:intron 25.0%
! CCACATAAACAAATCAAATT+TGG + chr2_2:56922987-56923006 None:intergenic 25.0%
!!! CCAAATTTGATTTGTTTATG+TGG - chr2_2:56922984-56923003 Msa0259660:intron 25.0%
! TACATTTAGACAACATGTAT+TGG + chr2_2:56923140-56923159 None:intergenic 25.0%
!!! AATTTTGAGGCTATGATTAA+AGG + chr2_2:56923175-56923194 None:intergenic 25.0%
!! ACATGAACTAGTTAATTTTG+AGG + chr2_2:56923188-56923207 None:intergenic 25.0%
! CTTCTCAAATAAAAAACTGA+AGG - chr2_2:56923260-56923279 Msa0259660:intron 25.0%
!! AGCTAAAAGATGATTCTTTT+TGG + chr2_2:56923440-56923459 None:intergenic 25.0%
! TTTCTTACACTATCCAATTA+CGG + chr2_2:56923511-56923530 None:intergenic 25.0%
! AAGGATGACAGTAATATAAT+GGG + chr2_2:56923578-56923597 None:intergenic 25.0%
! TAAGGATGACAGTAATATAA+TGG + chr2_2:56923579-56923598 None:intergenic 25.0%
! TTCTTGAACTTAGACAAATA+TGG + chr2_2:56923637-56923656 None:intergenic 25.0%
!! TTTAAAATATGGGGATTGTT+TGG - chr2_2:56923667-56923686 Msa0259660:intron 25.0%
GTGACAGTGGAATAATAATT+GGG + chr2_2:56918894-56918913 None:intergenic 30.0%
AGGTGGTGATAAATTAAAGT+TGG + chr2_2:56918923-56918942 None:intergenic 30.0%
AGTTGAATGAATGAATGAGT+GGG + chr2_2:56918956-56918975 None:intergenic 30.0%
TTCCTTCTTCTTCTTGTAAA+GGG + chr2_2:56918979-56918998 None:intergenic 30.0%
ATTCCTTCTTCTTCTTGTAA+AGG + chr2_2:56918980-56918999 None:intergenic 30.0%
AATGTAATTATATGCGGCAT+CGG + chr2_2:56919323-56919342 None:intergenic 30.0%
!!! GCTGTTATTATATTTTGACG+TGG - chr2_2:56919428-56919447 Msa0259660:three_prime_UTR 30.0%
AGCAAAAGAAAGACTAACTT+TGG - chr2_2:56919527-56919546 Msa0259660:three_prime_UTR 30.0%
TCTTACTCTCTAATCTATCT+TGG - chr2_2:56919759-56919778 Msa0259660:intron 30.0%
CTTACTCTCTAATCTATCTT+GGG - chr2_2:56919760-56919779 Msa0259660:intron 30.0%
TAAAAAGAAGCAAGCAATCA+AGG + chr2_2:56920239-56920258 None:intergenic 30.0%
! TTGATTGCTTGCTTCTTTTT+AGG - chr2_2:56920238-56920257 Msa0259660:intron 30.0%
!! AGAATGGGTTATGAATAGAT+AGG - chr2_2:56920532-56920551 Msa0259660:CDS 30.0%
!! GAATGGGTTATGAATAGATA+GGG - chr2_2:56920533-56920552 Msa0259660:CDS 30.0%
GAAGAAGATAGTGAAAAACT+TGG + chr2_2:56920731-56920750 None:intergenic 30.0%
GAATAAGAAATAAAAGGTGG+TGG - chr2_2:56920943-56920962 Msa0259660:intron 30.0%
ATAAGAAATAAAAGGTGGTG+GGG - chr2_2:56920945-56920964 Msa0259660:intron 30.0%
AATGAAAAAAACCATTGGAG+AGG - chr2_2:56920978-56920997 Msa0259660:intron 30.0%
! ATGTTGGTTACCATTGTAAA+TGG - chr2_2:56921086-56921105 Msa0259660:intron 30.0%
TCTAGTAAGACCATTTACAA+TGG + chr2_2:56921099-56921118 None:intergenic 30.0%
ATACTACTACTAATATGGTC+AGG - chr2_2:56921296-56921315 Msa0259660:intron 30.0%
TACTACTACTAATATGGTCA+GGG - chr2_2:56921297-56921316 Msa0259660:intron 30.0%
! AATTGTTAATTTGGACACAC+AGG - chr2_2:56921398-56921417 Msa0259660:CDS 30.0%
!! CATAGGAGTATTACAAGATT+TGG - chr2_2:56921668-56921687 Msa0259660:intron 30.0%
ATCATGAATACCGAATATGT+TGG - chr2_2:56921978-56921997 Msa0259660:intron 30.0%
TCATGAATACCGAATATGTT+GGG - chr2_2:56921979-56921998 Msa0259660:intron 30.0%
!!! GCTTTTATTTTAGGGTTTAG+CGG + chr2_2:56922065-56922084 None:intergenic 30.0%
ACAAGCTTATGTTCATGTTA+GGG - chr2_2:56922299-56922318 Msa0259660:intron 30.0%
ACGAAATACGTAGTATACTT+TGG + chr2_2:56922550-56922569 None:intergenic 30.0%
AATTTGTAACTCACATCACA+TGG + chr2_2:56922710-56922729 None:intergenic 30.0%
TGTGATGTGAGTTACAAATT+AGG - chr2_2:56922710-56922729 Msa0259660:intron 30.0%
ACAAATTAGGTAAAGAGTCA+AGG - chr2_2:56922723-56922742 Msa0259660:intron 30.0%
AGTATGTTGAAAAGAATTGG+TGG - chr2_2:56922953-56922972 Msa0259660:intron 30.0%
ATAATTCCTTTAGGTGGAAA+TGG + chr2_2:56923018-56923037 None:intergenic 30.0%
TCATATAAACATTCACTCAC+TGG + chr2_2:56923306-56923325 None:intergenic 30.0%
! CTTCTTTGTTTGGAATAGAA+AGG + chr2_2:56923359-56923378 None:intergenic 30.0%
TCTAGAGAATCTTCTTTGTT+TGG + chr2_2:56923369-56923388 None:intergenic 30.0%
!! TAATAAAGGATGGTTGGTTT+AGG + chr2_2:56923400-56923419 None:intergenic 30.0%
! ACTTGTTAATAAAGGATGGT+TGG + chr2_2:56923406-56923425 None:intergenic 30.0%
AGAAATGAAATGACCGTAAT+TGG - chr2_2:56923495-56923514 Msa0259660:intron 30.0%
TCTAACCTTTAGCAATATCT+GGG - chr2_2:56923700-56923719 Msa0259660:intron 30.0%
ACCAAATTTACCATTACCAA+TGG - chr2_2:56923778-56923797 Msa0259660:intron 30.0%
ATCCATTATGGAACCAAATT+CGG + chr2_2:56924064-56924083 None:intergenic 30.0%
TTGGATACTACTATCCATTA+TGG + chr2_2:56924076-56924095 None:intergenic 30.0%
ATAGTAGTATCCAATTCTGT+AGG - chr2_2:56924082-56924101 Msa0259660:five_prime_UTR 30.0%
TTAAAAACGACCTACAGAAT+TGG + chr2_2:56924095-56924114 None:intergenic 30.0%
TTAACAAACTCTCGTTTACT+AGG - chr2_2:56924111-56924130 Msa0259660:five_prime_UTR 30.0%
! TACAATATTGTGGATGGGTT+AGG - chr2_2:56918812-56918831 Msa0259660:three_prime_UTR 35.0%
GAAAGTGAAATTGCAATGTG+AGG + chr2_2:56918863-56918882 None:intergenic 35.0%
CGTGACAGTGGAATAATAAT+TGG + chr2_2:56918895-56918914 None:intergenic 35.0%
GAGTTGAATGAATGAATGAG+TGG + chr2_2:56918957-56918976 None:intergenic 35.0%
!!! TCTTTCAAGTGCCCATTTTT+TGG + chr2_2:56919498-56919517 None:intergenic 35.0%
CTTTAACGGAGTTAAGATCA+AGG + chr2_2:56919566-56919585 None:intergenic 35.0%
TCCATTAACGGCTTCTTTAA+CGG + chr2_2:56919580-56919599 None:intergenic 35.0%
CATGTGATTATTTGAACGGA+TGG - chr2_2:56920190-56920209 Msa0259660:intron 35.0%
! GCTTTTGCTTGTTTAATGTC+AGG + chr2_2:56920333-56920352 None:intergenic 35.0%
! GAGACTTGGTTCATTTCATT+TGG - chr2_2:56920690-56920709 Msa0259660:CDS 35.0%
TTCAACTTTAACCTCTCCAA+TGG + chr2_2:56920992-56921011 None:intergenic 35.0%
TTAAGAGAGAGAAGATGATG+TGG - chr2_2:56921023-56921042 Msa0259660:intron 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG - chr2_2:56921046-56921065 Msa0259660:intron 35.0%
GTGTTGGGAATTGAAAAAGT+GGG - chr2_2:56921047-56921066 Msa0259660:intron 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG - chr2_2:56921056-56921075 Msa0259660:intron 35.0%
!! TTGAAAAAGTGGGTGTTGAA+GGG - chr2_2:56921057-56921076 Msa0259660:intron 35.0%
!! TGTTGAAGGGTGTTTAATGT+TGG - chr2_2:56921070-56921089 Msa0259660:intron 35.0%
ACTACTACTAATATGGTCAG+GGG - chr2_2:56921298-56921317 Msa0259660:intron 35.0%
! GTGGTTTTCACATCATCAAT+TGG - chr2_2:56921495-56921514 Msa0259660:CDS 35.0%
TCAACATCAACACTCCTATT+GGG + chr2_2:56921537-56921556 None:intergenic 35.0%
ATCAATAGGACATAGGACAT+AGG - chr2_2:56921651-56921670 Msa0259660:intron 35.0%
TCTAGGTGTCTGATATTGAT+TGG - chr2_2:56921805-56921824 Msa0259660:intron 35.0%
GATCCAGATCCATTATAGTT+GGG - chr2_2:56921879-56921898 Msa0259660:intron 35.0%
ATCCAGATCCATTATAGTTG+GGG - chr2_2:56921880-56921899 Msa0259660:intron 35.0%
TTTAGTTGCCCCAACTATAA+TGG + chr2_2:56921891-56921910 None:intergenic 35.0%
CATGAATACCGAATATGTTG+GGG - chr2_2:56921980-56921999 Msa0259660:intron 35.0%
CACACAAGTGCAAATATGTA+GGG + chr2_2:56922035-56922054 None:intergenic 35.0%
TCACACAAGTGCAAATATGT+AGG + chr2_2:56922036-56922055 None:intergenic 35.0%
TTGTAGAATTGGTACTGCTA+TGG - chr2_2:56922102-56922121 Msa0259660:intron 35.0%
TGTAGAATTGGTACTGCTAT+GGG - chr2_2:56922103-56922122 Msa0259660:intron 35.0%
! AGTTGTAGTGAATCCAGTTT+TGG - chr2_2:56922182-56922201 Msa0259660:intron 35.0%
TTGATTGTAGGTTGTAGCAA+TGG + chr2_2:56922216-56922235 None:intergenic 35.0%
!! ATTGTGCTTGCATTGATTGT+AGG + chr2_2:56922228-56922247 None:intergenic 35.0%
! CACATACTAAAGTACCTAAC+TGG - chr2_2:56922249-56922268 Msa0259660:intron 35.0%
CACAAGCTTATGTTCATGTT+AGG - chr2_2:56922298-56922317 Msa0259660:intron 35.0%
TTATGTTCATGTTAGGGATG+TGG - chr2_2:56922305-56922324 Msa0259660:intron 35.0%
TGACTTACTTGGTAGGAATT+GGG + chr2_2:56922449-56922468 None:intergenic 35.0%
TTAAGAGTGACTTACTTGGT+AGG + chr2_2:56922456-56922475 None:intergenic 35.0%
TTTGGTATCATTACTCACGA+AGG - chr2_2:56922651-56922670 Msa0259660:intron 35.0%
TGTTGAAAAGAATTGGTGGA+TGG - chr2_2:56922957-56922976 Msa0259660:intron 35.0%
!! AAGTTGGTGATAAGGACATT+GGG + chr2_2:56923083-56923102 None:intergenic 35.0%
ACCAACTTCTTCCATGAATA+TGG - chr2_2:56923095-56923114 Msa0259660:intron 35.0%
CCAACTTCTTCCATGAATAT+GGG - chr2_2:56923096-56923115 Msa0259660:intron 35.0%
! AGTTCATGTTTTACACATGC+AGG - chr2_2:56923199-56923218 Msa0259660:intron 35.0%
!! AAGATATGTGGTTTTACTCG+AGG + chr2_2:56923243-56923262 None:intergenic 35.0%
! AAAACTGAAGGATTTGGGAT+TGG - chr2_2:56923272-56923291 Msa0259660:intron 35.0%
GTCTAACCTTTAGCAATATC+TGG - chr2_2:56923699-56923718 Msa0259660:intron 35.0%
ACAATCCCAGATATTGCTAA+AGG + chr2_2:56923708-56923727 None:intergenic 35.0%
!! GCCATTGGTAATGGTAAATT+TGG + chr2_2:56923782-56923801 None:intergenic 35.0%
!! TGAACCACATGATTTTTGAG+CGG + chr2_2:56923894-56923913 None:intergenic 35.0%
CCAACATCAACAAAACACAA+CGG + chr2_2:56923919-56923938 None:intergenic 35.0%
TCGGACTTTATCATGCAATT+CGG - chr2_2:56923947-56923966 Msa0259660:exon 35.0%
AATGAGTGGGATAGAGAAGA+AGG + chr2_2:56918943-56918962 None:intergenic 40.0%
CTCCCTTTACAAGAAGAAGA+AGG - chr2_2:56918974-56918993 Msa0259660:three_prime_UTR 40.0%
GGAAATTGAGGAAGATTCTG+CGG + chr2_2:56919025-56919044 None:intergenic 40.0%
GCAGAATCTTCCTCAATTTC+CGG - chr2_2:56919024-56919043 Msa0259660:three_prime_UTR 40.0%
GAGAAAGGCTATACTGTTAG+AGG - chr2_2:56919111-56919130 Msa0259660:three_prime_UTR 40.0%
AAATGGGCACTTGAAAGAGT+TGG - chr2_2:56919500-56919519 Msa0259660:three_prime_UTR 40.0%
TCCGTTAAAGAAGCCGTTAA+TGG - chr2_2:56919576-56919595 Msa0259660:CDS 40.0%
GACACCATGACATCCATTAA+CGG + chr2_2:56919592-56919611 None:intergenic 40.0%
ACACTTTGTCTTCGTCTAAG+TGG - chr2_2:56919926-56919945 Msa0259660:intron 40.0%
TGATTATTTGAACGGATGGC+AGG - chr2_2:56920194-56920213 Msa0259660:intron 40.0%
AGAAGCAAGCAATCAAGGTT+TGG + chr2_2:56920234-56920253 None:intergenic 40.0%
TGCACATAGTCTAAGAAGGT+TGG + chr2_2:56920296-56920315 None:intergenic 40.0%
CCATTGCACATAGTCTAAGA+AGG + chr2_2:56920300-56920319 None:intergenic 40.0%
CCTTCTTAGACTATGTGCAA+TGG - chr2_2:56920297-56920316 Msa0259660:intron 40.0%
AACAAGCAAAAGCAGTCCAA+TGG - chr2_2:56920340-56920359 Msa0259660:intron 40.0%
TGTGTTTAGAGGCTGTTGAA+TGG - chr2_2:56920363-56920382 Msa0259660:intron 40.0%
TGGATGAGAGAGATGATGAA+AGG - chr2_2:56920391-56920410 Msa0259660:intron 40.0%
! ACTCGATTATTGGCTGAAAC+AGG - chr2_2:56920453-56920472 Msa0259660:intron 40.0%
! CTCGATTATTGGCTGAAACA+GGG - chr2_2:56920454-56920473 Msa0259660:intron 40.0%
TATGAATAGATAGGGACACG+TGG - chr2_2:56920541-56920560 Msa0259660:CDS 40.0%
! AGAAGATGATGTGGAGTGTT+GGG - chr2_2:56921032-56921051 Msa0259660:intron 40.0%
! TGTTAATTTGGACACACAGG+AGG - chr2_2:56921401-56921420 Msa0259660:CDS 40.0%
ATCAATTGGCGCAGTCTATA+TGG - chr2_2:56921509-56921528 Msa0259660:CDS 40.0%
CAACATCAACACTCCTATTG+GGG + chr2_2:56921536-56921555 None:intergenic 40.0%
CTCAACATCAACACTCCTAT+TGG + chr2_2:56921538-56921557 None:intergenic 40.0%
!! CAATAGGAGTGTTGATGTTG+AGG - chr2_2:56921536-56921555 Msa0259660:intron 40.0%
! GGAATTTTGCAAGAACACCA+AGG - chr2_2:56921584-56921603 Msa0259660:intron 40.0%
GCTACTGATCAATAGGACAT+AGG - chr2_2:56921644-56921663 Msa0259660:intron 40.0%
CGATCCAGATCCATTATAGT+TGG - chr2_2:56921878-56921897 Msa0259660:intron 40.0%
CAGATACACCCCAACATATT+CGG + chr2_2:56921991-56922010 None:intergenic 40.0%
!!! GTGAATCCAGTTTTGGTTCT+TGG - chr2_2:56922189-56922208 Msa0259660:intron 40.0%
AATGGTCCAAGAACCAAAAC+TGG + chr2_2:56922198-56922217 None:intergenic 40.0%
AGCTTGTGTTGCATTTGCAT+AGG + chr2_2:56922286-56922305 None:intergenic 40.0%
TATGAGAAACCTTCTGCTTC+TGG - chr2_2:56922348-56922367 Msa0259660:intron 40.0%
AAGTATCTACCAGAAGCAGA+AGG + chr2_2:56922360-56922379 None:intergenic 40.0%
GAATTTCAACAAGCTCTCCA+CGG + chr2_2:56922404-56922423 None:intergenic 40.0%
GTGACTTACTTGGTAGGAAT+TGG + chr2_2:56922450-56922469 None:intergenic 40.0%
TCATTACTCACGAAGGTTAC+TGG - chr2_2:56922658-56922677 Msa0259660:intron 40.0%
AGTGATATGTTGTCACTCCT+AGG - chr2_2:56922853-56922872 Msa0259660:intron 40.0%
TACGTTCCATTTCCACCTAA+AGG - chr2_2:56923009-56923028 Msa0259660:intron 40.0%
!! AGTTGGTGATAAGGACATTG+GGG + chr2_2:56923082-56923101 None:intergenic 40.0%
!! GAAGTTGGTGATAAGGACAT+TGG + chr2_2:56923084-56923103 None:intergenic 40.0%
!! CATGGAAGAAGTTGGTGATA+AGG + chr2_2:56923091-56923110 None:intergenic 40.0%
CCCATATTCATGGAAGAAGT+TGG + chr2_2:56923099-56923118 None:intergenic 40.0%
ATTGAGCATGCCCATATTCA+TGG + chr2_2:56923109-56923128 None:intergenic 40.0%
!! TTGGTCTTGTAGGCTCTTAA+CGG + chr2_2:56923331-56923350 None:intergenic 40.0%
TTGGAATAGAAAGGTGACCT+TGG + chr2_2:56923350-56923369 None:intergenic 40.0%
!!! TTTTTCAAGTGCCGACAACA+AGG - chr2_2:56923825-56923844 Msa0259660:CDS 40.0%
!! ACATGATTTTTGAGCGGACA+TGG + chr2_2:56923888-56923907 None:intergenic 40.0%
ATGTCCGCTCAAAAATCATG+TGG - chr2_2:56923887-56923906 Msa0259660:CDS 40.0%
!! CCGTTGTGTTTTGTTGATGT+TGG - chr2_2:56923916-56923935 Msa0259660:CDS 40.0%
!! GTGTTTTGTTGATGTTGGAG+AGG - chr2_2:56923921-56923940 Msa0259660:CDS 40.0%
GACTTTATCATGCAATTCGG+TGG - chr2_2:56923950-56923969 Msa0259660:exon 40.0%
GTAGCTGATTACTTCAGCAA+AGG - chr2_2:56924024-56924043 Msa0259660:five_prime_UTR 40.0%
! CACCGAATTTGGTTCCATAA+TGG - chr2_2:56924059-56924078 Msa0259660:five_prime_UTR 40.0%
ACAAACTCTCGTTTACTAGG+AGG - chr2_2:56924114-56924133 Msa0259660:five_prime_UTR 40.0%
AATTGAGGAAGATTCTGCGG+CGG + chr2_2:56919022-56919041 None:intergenic 45.0%
TATGGTTTCGCCGGAAATTG+AGG + chr2_2:56919037-56919056 None:intergenic 45.0%
TTGGATGGTTAAGCTCCTCT+TGG - chr2_2:56919089-56919108 Msa0259660:three_prime_UTR 45.0%
GTTAAGCTCCTCTTGGAGAA+AGG - chr2_2:56919096-56919115 Msa0259660:three_prime_UTR 45.0%
CAGTATAGCCTTTCTCCAAG+AGG + chr2_2:56919107-56919126 None:intergenic 45.0%
! TTTTGTACCTGGGTTTCGCA+AGG + chr2_2:56919139-56919158 None:intergenic 45.0%
! GAAGCCGTTAATGGATGTCA+TGG - chr2_2:56919585-56919604 Msa0259660:CDS 45.0%
ACTGACGGGGTTATCTGTAA+CGG + chr2_2:56919631-56919650 None:intergenic 45.0%
!! CAAGGTTTGGTGGTGAGAAT+AGG + chr2_2:56920221-56920240 None:intergenic 45.0%
AGCAAGCAATCAAGGTTTGG+TGG + chr2_2:56920231-56920250 None:intergenic 45.0%
CAGTCCAATGGTGTGTTTAG+AGG - chr2_2:56920352-56920371 Msa0259660:intron 45.0%
ACAGCCTCTAAACACACCAT+TGG + chr2_2:56920359-56920378 None:intergenic 45.0%
! GCGAGATATGATTGGCTGTT+CGG - chr2_2:56920563-56920582 Msa0259660:CDS 45.0%
GAGAAGATGATGTGGAGTGT+TGG - chr2_2:56921031-56921050 Msa0259660:intron 45.0%
TTTGGACACACAGGAGGAAA+TGG - chr2_2:56921407-56921426 Msa0259660:CDS 45.0%
TTCTTTGCTCCATTCACTGC+TGG + chr2_2:56921438-56921457 None:intergenic 45.0%
CAGTCTATATGGACCCCAAT+AGG - chr2_2:56921520-56921539 Msa0259660:intron 45.0%
!! TTGAGGTTGATGAGTCTTGC+TGG - chr2_2:56921553-56921572 Msa0259660:intron 45.0%
TGAGTCTTGCTGGAGTGATT+TGG - chr2_2:56921563-56921582 Msa0259660:intron 45.0%
!! TGCCCCAACTATAATGGATC+TGG + chr2_2:56921885-56921904 None:intergenic 45.0%
TGGGATGTGGCAAAAGAGAA+AGG - chr2_2:56922150-56922169 Msa0259660:intron 45.0%
GGGATGTGGCAAAAGAGAAA+GGG - chr2_2:56922151-56922170 Msa0259660:intron 45.0%
GGATGTGGCAAAAGAGAAAG+GGG - chr2_2:56922152-56922171 Msa0259660:intron 45.0%
AGGTCTTAGCTGAACCAGTT+AGG + chr2_2:56922266-56922285 None:intergenic 45.0%
TGGTAGGAATTGGGTACTCA+GGG + chr2_2:56922440-56922459 None:intergenic 45.0%
TTGGTAGGAATTGGGTACTC+AGG + chr2_2:56922441-56922460 None:intergenic 45.0%
GTTGTCACTCCTAGGAACAT+TGG - chr2_2:56922861-56922880 Msa0259660:intron 45.0%
AACCAACCACCAATGTTCCT+AGG + chr2_2:56922873-56922892 None:intergenic 45.0%
! TAGGAACATTGGTGGTTGGT+TGG - chr2_2:56922872-56922891 Msa0259660:intron 45.0%
!! TAAGGACATTGGGGTTGGTA+AGG + chr2_2:56923073-56923092 None:intergenic 45.0%
GTTAAGAGCCTACAAGACCA+AGG - chr2_2:56923330-56923349 Msa0259660:CDS 45.0%
!! AAAGGTGACCTTGGTCTTGT+AGG + chr2_2:56923341-56923360 None:intergenic 45.0%
!! TCATCTTTTAGCTACCTGCG+AGG - chr2_2:56923447-56923466 Msa0259660:intron 45.0%
!! AGGCATCGATGAACTTGTTG+CGG + chr2_2:56923804-56923823 None:intergenic 45.0%
GTTGTCGGCACTTGAAAAAG+AGG + chr2_2:56923824-56923843 None:intergenic 45.0%
GATTACTTCAGCAAAGGACG+AGG - chr2_2:56924030-56924049 Msa0259660:five_prime_UTR 45.0%
TACTAGGAGGCAAGCAAATG+AGG - chr2_2:56924127-56924146 Msa0259660:five_prime_UTR 45.0%
!!! TTTTTATTTATTTTTATTTG+TGG - chr2_2:56920093-56920112 Msa0259660:intron 5.0%
!!! ATTCTTTTTTTTTTAATAAT+TGG - chr2_2:56920586-56920605 Msa0259660:CDS 5.0%
!! AATAAAATTAAATAAATGAA+GGG + chr2_2:56921623-56921642 None:intergenic 5.0%
!! AAATAAAATTAAATAAATGA+AGG + chr2_2:56921624-56921643 None:intergenic 5.0%
!! AAGTTGGTGTGACGTGACAG+TGG + chr2_2:56918907-56918926 None:intergenic 50.0%
GAGTGGGATAGAGAAGAAGG+TGG + chr2_2:56918940-56918959 None:intergenic 50.0%
GGTGACACATATGGTTTCGC+CGG + chr2_2:56919046-56919065 None:intergenic 50.0%
GGCGAAACCATATGTGTCAC+CGG - chr2_2:56919045-56919064 Msa0259660:three_prime_UTR 50.0%
TGGCTTCATCGCTTCTTGGA+TGG - chr2_2:56919074-56919093 Msa0259660:three_prime_UTR 50.0%
GGGCACTTGAAAGAGTTGGA+AGG - chr2_2:56919504-56919523 Msa0259660:three_prime_UTR 50.0%
CTGACGGGGTTATCTGTAAC+GGG + chr2_2:56919630-56919649 None:intergenic 50.0%
GAGGCTGTTGAATGGTGAGA+TGG - chr2_2:56920371-56920390 Msa0259660:intron 50.0%
AGAGGACGGTGAGAGAGAAT+GGG - chr2_2:56920517-56920536 Msa0259660:CDS 50.0%
GACACGTGGCGAGATATGAT+TGG - chr2_2:56920555-56920574 Msa0259660:CDS 50.0%
CTGCAGCAGAAGCAAATGTG+AGG - chr2_2:56921469-56921488 Msa0259660:CDS 50.0%
AGGGAGGGGAATATTGACCT+TGG + chr2_2:56921604-56921623 None:intergenic 50.0%
GTACTGCTATGGGAAAGCAG+TGG - chr2_2:56922113-56922132 Msa0259660:intron 50.0%
AGTGGCTGAACAAGCAGCAT+GGG - chr2_2:56922131-56922150 Msa0259660:intron 50.0%
TGAACAAGCAGCATGGGATG+TGG - chr2_2:56922137-56922156 Msa0259660:intron 50.0%
TGTGGCAAAAGAGAAAGGGG+TGG - chr2_2:56922155-56922174 Msa0259660:intron 50.0%
GCTGAAAGTTCACTTCACCG+TGG - chr2_2:56922384-56922403 Msa0259660:intron 50.0%
GTCACTCCTAGGAACATTGG+TGG - chr2_2:56922864-56922883 Msa0259660:intron 50.0%
! CTCCTAGGAACATTGGTGGT+TGG - chr2_2:56922868-56922887 Msa0259660:intron 50.0%
GGTGATAAGGACATTGGGGT+TGG + chr2_2:56923078-56923097 None:intergenic 50.0%
TTAGCTACCTGCGAGGCTTT+AGG - chr2_2:56923454-56923473 Msa0259660:intron 50.0%
CTTGTTGCGGCCATTGGTAA+TGG + chr2_2:56923791-56923810 None:intergenic 50.0%
!! GATGAACTTGTTGCGGCCAT+TGG + chr2_2:56923797-56923816 None:intergenic 50.0%
!! TCAAGTGCCGACAACAAGGT+TGG - chr2_2:56923829-56923848 Msa0259660:CDS 50.0%
!! GTTGATGTTGGAGAGGTGCT+CGG - chr2_2:56923928-56923947 Msa0259660:CDS 50.0%
CGAGGAGATGTCACCGAATT+TGG - chr2_2:56924048-56924067 Msa0259660:five_prime_UTR 50.0%
CCAAGAAGCGATGAAGCCAC+CGG + chr2_2:56919073-56919092 None:intergenic 55.0%
AGAGGAACCTTGCGAAACCC+AGG - chr2_2:56919129-56919148 Msa0259660:three_prime_UTR 55.0%
GCCACGCGTCACTCGATTAT+TGG - chr2_2:56920443-56920462 Msa0259660:intron 55.0%
GCCAATAATCGAGTGACGCG+TGG + chr2_2:56920447-56920466 None:intergenic 55.0%
CAGAGGACGGTGAGAGAGAA+TGG - chr2_2:56920516-56920535 Msa0259660:CDS 55.0%
GGACACACAGGAGGAAATGG+TGG - chr2_2:56921410-56921429 Msa0259660:CDS 55.0%
! ATGGTGGAGCCAGCAGTGAA+TGG - chr2_2:56921426-56921445 Msa0259660:CDS 55.0%
AGAAGCAAATGTGAGGCGCG+TGG - chr2_2:56921476-56921495 Msa0259660:CDS 55.0%
CAGTGGCTGAACAAGCAGCA+TGG - chr2_2:56922130-56922149 Msa0259660:intron 55.0%
! TGCCGACAACAAGGTTGGCT+TGG - chr2_2:56923834-56923853 Msa0259660:CDS 55.0%
!! GCCGACAACAAGGTTGGCTT+GGG - chr2_2:56923835-56923854 Msa0259660:CDS 55.0%
! GCCCAAGCCAACCTTGTTGT+CGG + chr2_2:56923839-56923858 None:intergenic 55.0%
TGAGGAAGATTCTGCGGCGG+CGG + chr2_2:56919019-56919038 None:intergenic 60.0%
ACCATATGTGTCACCGGCGC+CGG - chr2_2:56919051-56919070 Msa0259660:three_prime_UTR 60.0%
CCGGTGGCTTCATCGCTTCT+TGG - chr2_2:56919070-56919089 Msa0259660:three_prime_UTR 60.0%
!! GCGGCATCGGTGTCACGTAT+CGG + chr2_2:56919310-56919329 None:intergenic 60.0%
ATCGAGTGACGCGTGGCACA+CGG + chr2_2:56920440-56920459 None:intergenic 60.0%
GTGCAATACACGCGGGGACA+AGG - chr2_2:56920480-56920499 Msa0259660:intron 60.0%
GCTAGAGCCTAAAGCCTCGC+AGG + chr2_2:56923464-56923483 None:intergenic 60.0%
!! ACCGGCGCCGGTGACACATA+TGG + chr2_2:56919055-56919074 None:intergenic 65.0%
! ATATGTGTCACCGGCGCCGG+TGG - chr2_2:56919054-56919073 Msa0259660:three_prime_UTR 65.0%
CAGGGCGCGTGCAATACACG+CGG - chr2_2:56920472-56920491 Msa0259660:intron 65.0%
AGGGCGCGTGCAATACACGC+GGG - chr2_2:56920473-56920492 Msa0259660:intron 65.0%
GGAAGATTCTGCGGCGGCGG+TGG + chr2_2:56919016-56919035 None:intergenic 70.0%
AGCGATGAAGCCACCGGCGC+CGG + chr2_2:56919067-56919086 None:intergenic 70.0%
TGACGCGTGGCACACGGTGC+AGG + chr2_2:56920434-56920453 None:intergenic 70.0%
GGGCGCGTGCAATACACGCG+GGG - chr2_2:56920474-56920493 Msa0259660:intron 70.0%
ACACGCGGGGACAAGGCGCG+TGG - chr2_2:56920487-56920506 Msa0259660:intron 75.0%
CACGCGGGGACAAGGCGCGT+GGG - chr2_2:56920488-56920507 Msa0259660:intron 75.0%
! AAGGCGCGTGGGCGCTGCAG+AGG - chr2_2:56920499-56920518 Msa0259660:CDS 75.0%
! CGCGTGGGCGCTGCAGAGGA+CGG - chr2_2:56920503-56920522 Msa0259660:CDS 75.0%
! GCGGCGGCGGTGGTAGCAGC+AGG + chr2_2:56919006-56919025 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56918788 56924164 56918788 ID=Msa0259660;Name=Msa0259660
chr2_2 mRNA 56918788 56924164 56918788 ID=Msa0259660-mRNA-1;Parent=Msa0259660;Name=Msa0259660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=212|0.75|0.6|1|1|1|5|763|318
chr2_2 exon 56918788 56919731 56918788 ID=Msa0259660-mRNA-1:exon:17267;Parent=Msa0259660-mRNA-1
chr2_2 exon 56920492 56920804 56920492 ID=Msa0259660-mRNA-1:exon:17266;Parent=Msa0259660-mRNA-1
chr2_2 exon 56921376 56921532 56921376 ID=Msa0259660-mRNA-1:exon:17265;Parent=Msa0259660-mRNA-1
chr2_2 exon 56923308 56923462 56923308 ID=Msa0259660-mRNA-1:exon:17264;Parent=Msa0259660-mRNA-1
chr2_2 exon 56923802 56924164 56923802 ID=Msa0259660-mRNA-1:exon:17263;Parent=Msa0259660-mRNA-1
chr2_2 five_prime_UTR 56923953 56924164 56923953 ID=Msa0259660-mRNA-1:five_prime_utr;Parent=Msa0259660-mRNA-1
chr2_2 CDS 56923802 56923952 56923802 ID=Msa0259660-mRNA-1:cds;Parent=Msa0259660-mRNA-1
chr2_2 CDS 56923308 56923462 56923308 ID=Msa0259660-mRNA-1:cds;Parent=Msa0259660-mRNA-1
chr2_2 CDS 56921376 56921532 56921376 ID=Msa0259660-mRNA-1:cds;Parent=Msa0259660-mRNA-1
chr2_2 CDS 56920492 56920804 56920492 ID=Msa0259660-mRNA-1:cds;Parent=Msa0259660-mRNA-1
chr2_2 CDS 56919551 56919731 56919551 ID=Msa0259660-mRNA-1:cds;Parent=Msa0259660-mRNA-1
chr2_2 three_prime_UTR 56918788 56919550 56918788 ID=Msa0259660-mRNA-1:three_prime_utr;Parent=Msa0259660-mRNA-1
Gene Sequence

>Msa0259660

ATGCCTGCTGCTACCACCGCCGCCGCAGAATCTTCCTCAATTTCCGGCGAAACCATATGTGTCACCGGCGCCGGTGGCTTCATCGCTTCTTGGATGGTTAAGCTCCTCTTGGAGAAAGGCTATACTGTTAGAGGAACCTTGCGAAACCCAGATGATCCAAAAAATGGGCACTTGAAAGAGTTGGAAGGAGCAAAAGAAAGACTAACTTTGGTCAAAGTTGATCTCCTTGATCTTAACTCCGTTAAAGAAGCCGTTAATGGATGTCATGGTGTCTTTCACACTGCTTCTCCCGTTACAGATAACCCCGAGGAAATGGTGGAGCCAGCAGTGAATGGAGCAAAGAATGTGATCGTAGCTGCAGCAGAAGCAAATGTGAGGCGCGTGGTTTTCACATCATCAATTGGCGCAGTCTATATGGACCCCAATAGGAGTGTTGATGTTGAGGTTGATGAGTCTTGCTGGACATGGGATGTGGCAAAAGAGAAAGGGGTGGATTTAGTTGTAGTGAATCCAGTTTTGGTTCTTGGACCATTGCTACAACCTACAATCAATGCAAGCACAATTCACATACTAAAGTACCTAACTGGTTCAGCTAAGACCTATGCAAATGCAACACAAGCTTATGTTCATGTTAGGGATGTGGCATTAGCTCACATACTTGTTTATGAGAAACCTTCTGCTTCTGGTAGATACTTATGTGCTGAAAGTTCACTTCACCGTGGAGAGCTTGTTGAAATTCTTGCTAAGTATTTCCCTGAGTACCCAATTCCTACCAAGTGTTCAGATGAAAAGAATCCTCGAGTAAAACCACATATCTTCTCAAATAAAAAACTGAAGGATTTGGGATTGGAGTTCACTCCAGTGAGTGAATGTTTATATGAAACCGTTAAGAGCCTACAAGACCAAGGTCACCTTTCTATTCCAAACAAAGAAGATTCTCTAGAAGTCAAATCCTAA
Protein sequence

>Msa0259660

MPAATTAAAESSSISGETICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNGHLKELEGAKERLTLVKVDLLDLNSVKEAVNGCHGVFHTASPVTDNPEEMVEPAVNGAKNVIVAAAEANVRRVVFTSSIGAVYMDPNRSVDVEVDESCWTWDVAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFTPVSECLYETVKSLQDQGHLSIPNKEDSLEVKS*