AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259650 MtrunA17_Chr2g0333781 91.813 342 7 2 1 321 1 342 0.0 630
Msa0259650 MtrunA17_Chr4g0001321 73.874 333 64 4 7 316 3 335 2.98e-177 493
Msa0259650 MtrunA17_Chr3g0077231 43.519 324 154 7 14 310 1 322 5.50e-87 264
Msa0259650 MtrunA17_Chr3g0077221 45.031 322 148 7 11 305 2 321 1.15e-86 263
Msa0259650 MtrunA17_Chr4g0039311 44.795 317 146 7 16 305 8 322 4.55e-83 254
Msa0259650 MtrunA17_Chr4g0002661 43.260 319 152 4 15 308 9 323 3.99e-82 251
Msa0259650 MtrunA17_Chr4g0039321 43.925 321 151 8 12 305 2 320 1.26e-81 250
Msa0259650 MtrunA17_Chr5g0431311 41.693 319 159 4 17 309 3 320 1.36e-81 250
Msa0259650 MtrunA17_Chr8g0364051 42.857 322 154 8 16 310 5 323 3.07e-77 239
Msa0259650 MtrunA17_Chr3g0106111 40.506 316 161 4 17 306 3 317 1.63e-75 234
Msa0259650 MtrunA17_Chr4g0002961 43.438 320 152 4 15 309 9 324 4.24e-75 233
Msa0259650 MtrunA17_Chr8g0363831 42.902 317 151 7 16 305 6 319 4.70e-75 233
Msa0259650 MtrunA17_Chr5g0423551 40.881 318 158 8 19 308 4 319 3.56e-73 228
Msa0259650 MtrunA17_Chr1g0155411 38.769 325 161 11 17 308 6 325 5.33e-69 218
Msa0259650 MtrunA17_Chr2g0291541 39.752 322 161 6 17 308 8 326 6.27e-69 218
Msa0259650 MtrunA17_Chr1g0155431 38.650 326 162 10 16 308 5 325 8.63e-66 210
Msa0259650 MtrunA17_Chr2g0331211 36.991 319 170 6 19 309 5 320 3.09e-63 203
Msa0259650 MtrunA17_Chr7g0245741 33.231 325 176 11 19 308 8 326 1.90e-49 167
Msa0259650 MtrunA17_Chr7g0245641 34.969 326 172 13 19 308 45 366 2.06e-48 166
Msa0259650 MtrunA17_Chr7g0245671 35.671 328 167 14 19 308 8 329 4.92e-48 164
Msa0259650 MtrunA17_Chr7g0245731 33.951 324 175 11 19 308 58 376 6.25e-48 165
Msa0259650 MtrunA17_Chr4g0048961 33.432 338 184 9 7 306 2 336 5.64e-47 161
Msa0259650 MtrunA17_Chr7g0245691 32.121 330 177 11 19 308 8 330 3.84e-44 154
Msa0259650 MtrunA17_Chr4g0042101 32.635 334 175 9 20 308 25 353 1.08e-43 153
Msa0259650 MtrunA17_Chr4g0010991 31.385 325 187 10 18 308 7 329 1.31e-40 144
Msa0259650 MtrunA17_Chr7g0245631 32.198 323 182 12 19 308 8 326 1.00e-39 142
Msa0259650 MtrunA17_Chr7g0245711 31.449 283 157 9 58 308 11 288 7.49e-34 125
Msa0259650 MtrunA17_Chr5g0411071 29.642 307 177 9 9 288 2 296 2.97e-33 124
Msa0259650 MtrunA17_Chr2g0282001 28.994 338 191 10 19 310 7 341 9.53e-31 118
Msa0259650 MtrunA17_Chr7g0275521 28.302 318 175 11 19 288 7 319 4.61e-28 111
Msa0259650 MtrunA17_Chr2g0281991 27.811 338 195 10 19 310 8 342 3.73e-27 108
Msa0259650 MtrunA17_Chr6g0450211 29.392 296 170 9 19 281 55 344 1.12e-26 107
Msa0259650 MtrunA17_Chr2g0282011 28.616 318 173 10 19 288 8 319 1.05e-25 105
Msa0259650 MtrunA17_Chr3g0133771 27.119 236 145 8 19 235 4 231 7.47e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259650 AT1G15950.3 72.013 318 69 1 12 309 6 323 4.87e-160 451
Msa0259650 AT1G15950.1 72.013 318 69 1 12 309 6 323 4.87e-160 451
Msa0259650 AT1G80820.1 68.098 326 84 1 14 319 3 328 1.22e-156 441
Msa0259650 AT1G15950.2 71.987 307 66 1 12 298 6 312 1.05e-152 432
Msa0259650 AT1G15950.4 72.364 275 56 1 12 266 6 280 1.16e-132 379
Msa0259650 AT1G15950.6 73.063 271 53 1 12 262 6 276 1.75e-132 378
Msa0259650 AT1G15950.5 72.963 270 53 1 12 261 6 275 1.25e-131 376
Msa0259650 AT1G80820.2 69.888 269 61 1 14 262 3 271 3.77e-127 364
Msa0259650 AT1G15950.7 72.889 225 41 1 105 309 1 225 2.50e-104 305
Msa0259650 AT5G19440.1 45.511 323 147 7 11 306 2 322 4.59e-90 272
Msa0259650 AT1G51410.1 42.945 326 157 7 12 310 2 325 1.70e-81 250
Msa0259650 AT5G58490.1 42.947 319 155 4 17 309 7 324 4.99e-81 249
Msa0259650 AT2G02400.1 41.433 321 159 5 14 308 1 318 2.39e-79 244
Msa0259650 AT2G33590.1 44.695 311 142 6 19 303 9 315 3.71e-76 236
Msa0259650 AT1G09510.1 42.633 319 150 8 16 305 5 319 1.67e-73 229
Msa0259650 AT1G66800.1 43.827 324 135 12 16 305 5 315 2.86e-70 221
Msa0259650 AT1G76470.1 40.312 320 161 3 17 308 5 322 6.22e-69 218
Msa0259650 AT4G35420.1 39.623 318 162 8 19 309 8 322 1.09e-68 218
Msa0259650 AT1G68540.1 39.432 317 162 6 21 308 6 321 1.30e-68 217
Msa0259650 AT1G09490.1 40.498 321 160 8 16 308 5 322 4.15e-68 216
Msa0259650 AT1G09480.2 40.432 324 156 9 16 308 5 322 7.68e-68 215
Msa0259650 AT1G09480.1 40.432 324 156 9 16 308 52 369 1.68e-67 216
Msa0259650 AT1G09500.1 39.938 323 156 9 16 305 5 322 2.66e-63 203
Msa0259650 AT2G33600.1 41.801 311 151 6 19 303 9 315 5.37e-62 200
Msa0259650 AT1G25460.1 37.778 315 168 5 21 308 6 319 7.09e-62 199
Msa0259650 AT5G42800.1 37.538 325 169 10 17 310 6 327 1.33e-59 196
Msa0259650 AT1G09500.3 41.219 279 127 8 16 262 5 278 7.39e-59 191
Msa0259650 AT1G09490.2 37.544 285 148 7 51 308 10 291 9.73e-50 167
Msa0259650 AT2G45400.1 34.251 327 176 10 19 308 40 364 3.46e-48 166
Msa0259650 AT1G09500.2 37.282 287 143 8 51 305 7 288 4.62e-45 155
Msa0259650 AT4G27250.1 33.333 318 161 9 18 288 12 325 5.69e-45 157
Msa0259650 AT2G45400.2 34.892 278 146 7 19 261 40 317 1.23e-43 152
Msa0259650 AT4G27250.2 33.548 310 161 9 18 288 12 315 1.26e-43 153
Msa0259650 AT2G23910.1 32.107 299 157 9 20 284 11 297 1.83e-38 138
Msa0259650 AT2G23910.2 32.246 276 142 8 20 262 11 274 1.49e-37 135
Msa0259650 AT2G23910.3 32.482 274 140 8 20 260 11 272 1.96e-37 135
Msa0259650 AT1G61720.1 28.000 325 193 9 20 306 14 335 1.60e-36 134
Msa0259650 AT1G68540.2 34.123 211 117 3 119 308 5 214 9.95e-36 129
Msa0259650 AT2G45400.3 32.154 311 172 10 33 308 1 307 4.24e-34 127
Msa0259650 AT4G30470.1 30.795 302 166 8 15 284 6 296 9.64e-33 123
Msa0259650 AT2G23910.4 32.308 260 131 8 58 284 16 263 1.50e-30 117
Msa0259650 AT2G45400.4 33.796 216 109 6 19 200 40 255 2.01e-27 108
Msa0259650 AT5G14700.1 30.097 309 166 12 19 284 55 356 1.58e-25 105
Msa0259650 AT5G14700.2 30.909 220 112 8 19 203 55 269 1.30e-16 79.3
Msa0259650 AT4G33360.3 25.726 241 142 7 19 235 3 230 9.66e-15 74.3
Msa0259650 AT4G33360.2 25.726 241 142 7 19 235 15 242 9.93e-15 73.9
Msa0259650 AT4G33360.1 25.726 241 142 7 19 235 15 242 1.39e-14 73.9

Find 133 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTAACCTTTAGCAATATC+TGG 0.145493 2_2:-56888174 Msa0259650:three_prime_UTR
GCCATTGGTAATGGTAAATT+TGG 0.167404 2_2:+56888094 None:intergenic
CGAGGAGATGTCACCGAATT+TGG 0.198738 2_2:-56887825 Msa0259650:three_prime_UTR
AGAAATGAAATGACCGTAAT+TGG 0.215325 2_2:-56888379 Msa0259650:three_prime_UTR
AGTTAAAAGTGTTTAAAATA+TGG 0.223733 2_2:-56888217 Msa0259650:three_prime_UTR
CGTGACAGTGGAATAATAAT+TGG 0.228806 2_2:+56892239 None:intergenic
CCGGTGGCTTCATCGCTTCT+TGG 0.240471 2_2:-56892061 Msa0259650:CDS
GCAGAATCTTCCTCAATTTC+CGG 0.262911 2_2:-56892107 Msa0259650:CDS
TGAATTAAACTTGTTAATAA+AGG 0.280382 2_2:+56888465 None:intergenic
CTCAACATCAACACTCCTAT+TGG 0.285572 2_2:+56890395 None:intergenic
TATGAGAAACCTTCTGCTTC+TGG 0.292884 2_2:-56889594 Msa0259650:CDS
GTGACTTACTTGGTAGGAAT+TGG 0.293032 2_2:+56889495 None:intergenic
TAAGGATGACAGTAATATAA+TGG 0.297166 2_2:+56888298 None:intergenic
ATCAATTGGCGCAGTCTATA+TGG 0.300091 2_2:-56890421 Msa0259650:CDS
CACAAGCTTATGTTCATGTT+AGG 0.302408 2_2:-56889644 Msa0259650:CDS
TCTAGAGAATCTTCTTTGTT+TGG 0.306818 2_2:+56888510 None:intergenic
TTGGATACTACTATCCATTA+TGG 0.318150 2_2:+56887800 None:intergenic
CACCGAATTTGGTTCCATAA+TGG 0.318286 2_2:-56887814 Msa0259650:three_prime_UTR
TCCATTAACGGCTTCTTTAA+CGG 0.328595 2_2:+56891557 None:intergenic
TCCGTTAAAGAAGCCGTTAA+TGG 0.331782 2_2:-56891558 Msa0259650:CDS
TTCCTTCTTCTTCTTGTAAA+GGG 0.337783 2_2:+56892155 None:intergenic
TTATTAACAAGTTTAATTCA+TGG 0.338237 2_2:-56888462 Msa0259650:three_prime_UTR
TCAACATCAACACTCCTATT+GGG 0.340370 2_2:+56890396 None:intergenic
TTTAAAATATGGGGATTGTT+TGG 0.345504 2_2:-56888206 Msa0259650:three_prime_UTR
TACTCAAGAAAATACTAATA+AGG 0.347815 2_2:+56888280 None:intergenic
TTCTTTGCTCCATTCACTGC+TGG 0.349124 2_2:+56890495 None:intergenic
ATTGTGCTTGCATTGATTGT+AGG 0.355496 2_2:+56889717 None:intergenic
AGTTGTAGTGAATCCAGTTT+TGG 0.358005 2_2:-56889760 Msa0259650:CDS
GTTAAAAGTGTTTAAAATAT+GGG 0.364039 2_2:-56888216 Msa0259650:three_prime_UTR
TAATAAAGGATGGTTGGTTT+AGG 0.367316 2_2:+56888479 None:intergenic
TTTCTTACACTATCCAATTA+CGG 0.375261 2_2:+56888366 None:intergenic
AAAGGTGACCTTGGTCTTGT+AGG 0.380163 2_2:+56888538 None:intergenic
TTGAGGTTGATGAGTCTTGC+TGG 0.381677 2_2:-56890377 Msa0259650:CDS
ATTTGGTAATAATAAATAAT+AGG 0.385633 2_2:+56888111 None:intergenic
ATCCATTATGGAACCAAATT+CGG 0.390210 2_2:+56887812 None:intergenic
TGAGTCTTGCTGGAGTGATT+TGG 0.392451 2_2:-56890367 Msa0259650:CDS
GCCTACAACAAGGTTGGCTT+GGG 0.393544 2_2:-56888038 Msa0259650:three_prime_UTR
GAGAAAGGCTATACTGTTAG+AGG 0.399644 2_2:-56892020 Msa0259650:CDS
TCTTGAACTAGAGACAAATA+TGG 0.402489 2_2:+56888240 None:intergenic
TTGGTCTTGTAGGCTCTTAA+CGG 0.408849 2_2:+56888548 None:intergenic
ATTCCTTCTTCTTCTTGTAA+AGG 0.413305 2_2:+56892154 None:intergenic
CACATACTAAAGTACCTAAC+TGG 0.418602 2_2:-56889693 Msa0259650:CDS
TTTGGACACACAGGAGGAAA+TGG 0.419258 2_2:-56890523 Msa0259650:intron
AAGGATGACAGTAATATAAT+GGG 0.423103 2_2:+56888299 None:intergenic
TTAACAAACTCTCGTTTACT+AGG 0.427280 2_2:-56887762 Msa0259650:three_prime_UTR
TACAATATTGTGGATGGGTT+AGG 0.428047 2_2:-56892319 Msa0259650:five_prime_UTR
TGCCTACAACAAGGTTGGCT+TGG 0.429413 2_2:-56888039 Msa0259650:three_prime_UTR
TTGGATGGTTAAGCTCCTCT+TGG 0.431425 2_2:-56892042 Msa0259650:CDS
CTTCTTTGTTTGGAATAGAA+AGG 0.435435 2_2:+56888520 None:intergenic
TTAGCTACCTGCGAGGCTTT+AGG 0.440840 2_2:-56888420 Msa0259650:three_prime_UTR
AGCAAAAGAAAGACTAACTT+TGG 0.443191 2_2:-56891607 Msa0259650:CDS
CAGTCTATATGGACCCCAAT+AGG 0.445142 2_2:-56890410 Msa0259650:CDS
AATGGTCCAAGAACCAAAAC+TGG 0.452263 2_2:+56889747 None:intergenic
GCGGCGGCGGTGGTAGCAGC+AGG 0.455436 2_2:+56892128 None:intergenic
GGAAGATTCTGCGGCGGCGG+TGG 0.458764 2_2:+56892118 None:intergenic
GTGACAGTGGAATAATAATT+GGG 0.458810 2_2:+56892240 None:intergenic
TGGCTTCATCGCTTCTTGGA+TGG 0.463428 2_2:-56892057 Msa0259650:CDS
TGACTTACTTGGTAGGAATT+GGG 0.464359 2_2:+56889496 None:intergenic
TTAAAATACAATATTGTGGA+TGG 0.465487 2_2:-56892325 Msa0259650:five_prime_UTR
AAAACTGAAGGATTTGGGAT+TGG 0.468538 2_2:-56888604 Msa0259650:CDS
TTAAACTTGTTAATAAAGGA+TGG 0.471619 2_2:+56888469 None:intergenic
ACAAGCTTATGTTCATGTTA+GGG 0.475300 2_2:-56889643 Msa0259650:CDS
ACTTGTTAATAAAGGATGGT+TGG 0.475707 2_2:+56888473 None:intergenic
AGGTCTTAGCTGAACCAGTT+AGG 0.475944 2_2:+56889679 None:intergenic
GACACCATGACATCCATTAA+CGG 0.478255 2_2:+56891545 None:intergenic
TCTAACCTTTAGCAATATCT+GGG 0.484776 2_2:-56888173 Msa0259650:three_prime_UTR
AATGAGTGGGATAGAGAAGA+AGG 0.485430 2_2:+56892191 None:intergenic
CTTGTTGAGGCCATTGGTAA+TGG 0.487727 2_2:+56888085 None:intergenic
GCCCAAGCCAACCTTGTTGT+AGG 0.489563 2_2:+56888037 None:intergenic
TGGATTAAAATACAATATTG+TGG 0.495329 2_2:-56892329 Msa0259650:five_prime_UTR
AAATGGGCACTTGAAAGAGT+TGG 0.499323 2_2:-56891634 Msa0259650:CDS
ATGGTGGAGCCAGCAGTGAA+TGG 0.499409 2_2:-56890504 Msa0259650:CDS
CTGACGGGGTTATCTGTAAC+GGG 0.499421 2_2:+56891507 None:intergenic
GATGAACTTGTTGAGGCCAT+TGG 0.500857 2_2:+56888079 None:intergenic
TTGGTAGGAATTGGGTACTC+AGG 0.501534 2_2:+56889504 None:intergenic
AGCGATGAAGCCACCGGCGC+CGG 0.501975 2_2:+56892067 None:intergenic
ACCAAATTTACCATTACCAA+TGG 0.502475 2_2:-56888095 Msa0259650:three_prime_UTR
TATGGTTTCGCCGGAAATTG+AGG 0.503195 2_2:+56892097 None:intergenic
ACCGGCGCCGGTGACACATA+TGG 0.505863 2_2:+56892079 None:intergenic
TCGGACTTTATCATGCAATT+CGG 0.508588 2_2:-56887926 Msa0259650:three_prime_UTR
ACCATATGTGTCACCGGCGC+CGG 0.511679 2_2:-56892080 Msa0259650:CDS
TACTAGGAGGCAAGCAAATG+AGG 0.517124 2_2:-56887746 Msa0259650:three_prime_UTR
GACTTTATCATGCAATTCGG+TGG 0.523799 2_2:-56887923 Msa0259650:three_prime_UTR
CTTTAACGGAGTTAAGATCA+AGG 0.524956 2_2:+56891571 None:intergenic
TGAGGAAGATTCTGCGGCGG+CGG 0.526567 2_2:+56892115 None:intergenic
TCAAGTGCCTACAACAAGGT+TGG 0.526991 2_2:-56888044 Msa0259650:three_prime_UTR
TCATATAAACATTCACTCAC+TGG 0.528141 2_2:+56888573 None:intergenic
GTTAAGCTCCTCTTGGAGAA+AGG 0.529443 2_2:-56892035 Msa0259650:CDS
TTAAAAGTGTTTAAAATATG+GGG 0.530959 2_2:-56888215 Msa0259650:three_prime_UTR
AGGTGGTGATAAATTAAAGT+TGG 0.531358 2_2:+56892211 None:intergenic
TTATGTTCATGTTAGGGATG+TGG 0.538028 2_2:-56889637 Msa0259650:CDS
GTTGATGTTGGAGAGGTGCT+CGG 0.540685 2_2:-56887945 Msa0259650:three_prime_UTR
TAAAATACAATATTGTGGAT+GGG 0.542922 2_2:-56892324 Msa0259650:five_prime_UTR
ATATGTGTCACCGGCGCCGG+TGG 0.552094 2_2:-56892077 Msa0259650:CDS
ACAATCCCAGATATTGCTAA+AGG 0.553231 2_2:+56888168 None:intergenic
TTAAGAGTGACTTACTTGGT+AGG 0.563350 2_2:+56889489 None:intergenic
TGGTAGGAATTGGGTACTCA+GGG 0.564638 2_2:+56889505 None:intergenic
GCTAGAGCCTAAAGCCTCGC+AGG 0.569596 2_2:+56888413 None:intergenic
CCAAGAAGCGATGAAGCCAC+CGG 0.571020 2_2:+56892061 None:intergenic
CTCCCTTTACAAGAAGAAGA+AGG 0.571219 2_2:-56892157 Msa0259650:five_prime_UTR
GGCGAAACCATATGTGTCAC+CGG 0.572762 2_2:-56892086 Msa0259650:CDS
AGCTTGTGTTGCATTTGCAT+AGG 0.575371 2_2:+56889659 None:intergenic
TTGGAATAGAAAGGTGACCT+TGG 0.582400 2_2:+56888529 None:intergenic
GAAGCCGTTAATGGATGTCA+TGG 0.583328 2_2:-56891549 Msa0259650:CDS
ACTGACGGGGTTATCTGTAA+CGG 0.589424 2_2:+56891506 None:intergenic
GAGTGGGATAGAGAAGAAGG+TGG 0.594227 2_2:+56892194 None:intergenic
CAACATCAACACTCCTATTG+GGG 0.595944 2_2:+56890397 None:intergenic
ATAGTAGTATCCAATTCTGT+AGG 0.599500 2_2:-56887791 Msa0259650:three_prime_UTR
CAATAGGAGTGTTGATGTTG+AGG 0.599834 2_2:-56890394 Msa0259650:CDS
GATTACTTCAGCAAAGGACG+AGG 0.600213 2_2:-56887843 Msa0259650:three_prime_UTR
ACAAACTCTCGTTTACTAGG+AGG 0.604963 2_2:-56887759 Msa0259650:three_prime_UTR
GGTGACACATATGGTTTCGC+CGG 0.608771 2_2:+56892088 None:intergenic
AGGCATCGATGAACTTGTTG+AGG 0.611360 2_2:+56888072 None:intergenic
AGAGGAACCTTGCGAAACCC+AGG 0.613164 2_2:-56892002 Msa0259650:intron
CAGTATAGCCTTTCTCCAAG+AGG 0.617628 2_2:+56892027 None:intergenic
GGACACACAGGAGGAAATGG+TGG 0.629666 2_2:-56890520 Msa0259650:intron
GTAGCTGATTACTTCAGCAA+AGG 0.633455 2_2:-56887849 Msa0259650:three_prime_UTR
TTGATTGTAGGTTGTAGCAA+TGG 0.640557 2_2:+56889729 None:intergenic
GAATTTCAACAAGCTCTCCA+CGG 0.644131 2_2:+56889541 None:intergenic
AGTTGAATGAATGAATGAGT+GGG 0.658721 2_2:+56892178 None:intergenic
GAAAGTGAAATTGCAATGTG+AGG 0.660697 2_2:+56892271 None:intergenic
GGGCACTTGAAAGAGTTGGA+AGG 0.662593 2_2:-56891630 Msa0259650:CDS
AAGTATCTACCAGAAGCAGA+AGG 0.665232 2_2:+56889585 None:intergenic
GAGTTGAATGAATGAATGAG+TGG 0.674978 2_2:+56892177 None:intergenic
TGTGGCAAAAGAGAAAGGGG+TGG 0.680248 2_2:-56889787 Msa0259650:intron
AAGTTGGTGTGACGTGACAG+TGG 0.683204 2_2:+56892227 None:intergenic
GGAAATTGAGGAAGATTCTG+CGG 0.685599 2_2:+56892109 None:intergenic
AGAAGCAAAAGTGAGGCGCG+TGG 0.708286 2_2:-56890454 Msa0259650:CDS
AATTGAGGAAGATTCTGCGG+CGG 0.716984 2_2:+56892112 None:intergenic
CTGCAGCAGAAGCAAAAGTG+AGG 0.720003 2_2:-56890461 Msa0259650:CDS
GTTAAGAGCCTACAAGACCA+AGG 0.728061 2_2:-56888546 Msa0259650:CDS
CCAACATCAACAAAACACAA+CGG 0.751433 2_2:+56887957 None:intergenic
GCTGAAAGTTCACTTCACCG+TGG 0.785254 2_2:-56889558 Msa0259650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAATT+TGG - chr2_2:56890961-56890980 Msa0259650:intron 0.0%
!! TATTTATGTGAATTAAATTA+AGG + chr2_2:56888121-56888140 None:intergenic 10.0%
!!! TAACATTTAACTTTTTTAAA+GGG + chr2_2:56888777-56888796 None:intergenic 10.0%
!!! ATAACATTTAACTTTTTTAA+AGG + chr2_2:56888778-56888797 None:intergenic 10.0%
!!! TATTGATTTTATTCTTTTTT+TGG - chr2_2:56890646-56890665 Msa0259650:intron 10.0%
!! ATAAATTTAATAATTCCTTT+AGG + chr2_2:56891184-56891203 None:intergenic 10.0%
!! ATTAAATTTATAAAATCAAG+TGG - chr2_2:56891193-56891212 Msa0259650:intron 10.0%
!!! ATATTTTTTTAATTCTAGAA+TGG - chr2_2:56891307-56891326 Msa0259650:intron 10.0%
!!! ATTTGGTAATAATAAATAAT+AGG + chr2_2:56891966-56891985 None:intergenic 10.0%
!! TAATTCAATGTAATTATATG+CGG + chr2_2:56888272-56888291 None:intergenic 15.0%
!! GAATGAAAAAAATTCAATTA+AGG + chr2_2:56888629-56888648 None:intergenic 15.0%
!!! TATTATTTTTCTTTTTGGAT+TGG + chr2_2:56888681-56888700 None:intergenic 15.0%
!!! AAGACTATTATTTTTCTTTT+TGG + chr2_2:56888686-56888705 None:intergenic 15.0%
!! ATATAATATCTTAGATATGA+TGG + chr2_2:56888848-56888867 None:intergenic 15.0%
!!! AATTTACCATATTATTTTAG+AGG + chr2_2:56888906-56888925 None:intergenic 15.0%
!!! GTAAATTTTATCAAAAGAAA+TGG - chr2_2:56888919-56888938 Msa0259650:intron 15.0%
!!! TTTGATTTGAATTCTTAATT+TGG - chr2_2:56889533-56889552 Msa0259650:CDS 15.0%
!! TCAAAAACATTTCATTTAAA+TGG + chr2_2:56890718-56890737 None:intergenic 15.0%
!!! TGAATTAAACTTGTTAATAA+AGG + chr2_2:56891612-56891631 None:intergenic 15.0%
!! TTATTAACAAGTTTAATTCA+TGG - chr2_2:56891612-56891631 Msa0259650:CDS 15.0%
!!! AGTTAAAAGTGTTTAAAATA+TGG - chr2_2:56891857-56891876 Msa0259650:intron 15.0%
!!! GTTAAAAGTGTTTAAAATAT+GGG - chr2_2:56891858-56891877 Msa0259650:intron 15.0%
!!! TTAAAAGTGTTTAAAATATG+GGG - chr2_2:56891859-56891878 Msa0259650:intron 15.0%
!! TGGATTAAAATACAATATTG+TGG - chr2_2:56887745-56887764 Msa0259650:three_prime_UTR 20.0%
!! TTAAAATACAATATTGTGGA+TGG - chr2_2:56887749-56887768 Msa0259650:three_prime_UTR 20.0%
!! TAAAATACAATATTGTGGAT+GGG - chr2_2:56887750-56887769 Msa0259650:three_prime_UTR 20.0%
!!! CAATTTTACTATCTATGTAT+AGG - chr2_2:56888302-56888321 Msa0259650:three_prime_UTR 20.0%
!!! TTAGATATGATGGAATTAAA+AGG + chr2_2:56888838-56888857 None:intergenic 20.0%
!!! TCTTTTTAGGATAATAAATG+TGG - chr2_2:56889193-56889212 Msa0259650:intron 20.0%
!! AAATTAAATAAATGAAGGGA+GGG + chr2_2:56889763-56889782 None:intergenic 20.0%
!! AAAATTAAATAAATGAAGGG+AGG + chr2_2:56889764-56889783 None:intergenic 20.0%
!! AAATATGAATCAATCATGAT+TGG + chr2_2:56889876-56889895 None:intergenic 20.0%
!! ATTTGAGAATATTGTAGAAT+TGG - chr2_2:56890223-56890242 Msa0259650:intron 20.0%
!! ACATTTCATTTAAATGGAAA+TGG + chr2_2:56890712-56890731 None:intergenic 20.0%
!!! GTTTTAGTATTTTGCAATTT+TGG - chr2_2:56890765-56890784 Msa0259650:intron 20.0%
!! AATTTAATAATTCCTTTAGG+TGG + chr2_2:56891181-56891200 None:intergenic 20.0%
!!! TTTTTATTTGAGAAGATATG+TGG + chr2_2:56891453-56891472 None:intergenic 20.0%
!! AAATAAAAAACTGAAGGATT+TGG - chr2_2:56891464-56891483 Msa0259650:intron 20.0%
!! AATAAAAAACTGAAGGATTT+GGG - chr2_2:56891465-56891484 Msa0259650:intron 20.0%
!!! TTAAACTTGTTAATAAAGGA+TGG + chr2_2:56891608-56891627 None:intergenic 20.0%
!! TACTCAAGAAAATACTAATA+AGG + chr2_2:56891797-56891816 None:intergenic 20.0%
!!! GTAGAATATTTTTTGTACCT+GGG + chr2_2:56888092-56888111 None:intergenic 25.0%
!!! AGTAGAATATTTTTTGTACC+TGG + chr2_2:56888093-56888112 None:intergenic 25.0%
!! ATAACGTTGTTGATAAGATT+AGG - chr2_2:56888339-56888358 Msa0259650:three_prime_UTR 25.0%
!!! CTGTTATTATATTTTGACGT+GGG - chr2_2:56888369-56888388 Msa0259650:three_prime_UTR 25.0%
!! TTTTCAGATGATCCAAAAAA+TGG - chr2_2:56888423-56888442 Msa0259650:three_prime_UTR 25.0%
! TTTCAGATGATCCAAAAAAT+GGG - chr2_2:56888424-56888443 Msa0259650:three_prime_UTR 25.0%
! AAATGAATTAAAAACTGACG+GGG + chr2_2:56888584-56888603 None:intergenic 25.0%
! GAAATGAATTAAAAACTGAC+GGG + chr2_2:56888585-56888604 None:intergenic 25.0%
! GGAAATGAATTAAAAACTGA+CGG + chr2_2:56888586-56888605 None:intergenic 25.0%
! GAAGAATAGAATAGAAATAG+AGG + chr2_2:56888607-56888626 None:intergenic 25.0%
!! TTTTCAATCTTCTCTTTCAA+AGG - chr2_2:56888653-56888672 Msa0259650:CDS 25.0%
!!! CTTTTTTAAAGGGAAAATGA+CGG + chr2_2:56888767-56888786 None:intergenic 25.0%
!!! ATATTATTTTAGAGGCTATG+TGG + chr2_2:56888898-56888917 None:intergenic 25.0%
!!! ACATAGCCTCTAAAATAATA+TGG - chr2_2:56888897-56888916 Msa0259650:intron 25.0%
! ATGTCATGTGATTATTTGAA+CGG - chr2_2:56889128-56889147 Msa0259650:intron 25.0%
! TAACACGAAAACTAGTAAAA+GGG + chr2_2:56889355-56889374 None:intergenic 25.0%
! TTAACACGAAAACTAGTAAA+AGG + chr2_2:56889356-56889375 None:intergenic 25.0%
! TCTTCTTAATAATATGCTCA+TGG - chr2_2:56889440-56889459 Msa0259650:intron 25.0%
! CTTCTTAATAATATGCTCAT+GGG - chr2_2:56889441-56889460 Msa0259650:intron 25.0%
! ACTTTCGCATAAAATCAAAT+TGG + chr2_2:56889506-56889525 None:intergenic 25.0%
! AATTAAATAAATGAAGGGAG+GGG + chr2_2:56889762-56889781 None:intergenic 25.0%
!! TTTATTTGCTACTGATCAAT+AGG - chr2_2:56889781-56889800 Msa0259650:intron 25.0%
! AGTATTACAAGATTTGGATT+AGG - chr2_2:56889811-56889830 Msa0259650:intron 25.0%
!! AAAAAACGAGTCTAAAATCT+AGG - chr2_2:56889925-56889944 Msa0259650:intron 25.0%
!!! CTCAAATCGCTTTTATTTTA+GGG + chr2_2:56890210-56890229 None:intergenic 25.0%
!!! TCTCAAATCGCTTTTATTTT+AGG + chr2_2:56890211-56890230 None:intergenic 25.0%
!!! TTTTTTAAGAGTGACTTACT+TGG + chr2_2:56890592-56890611 None:intergenic 25.0%
!!! ATTCTTTTTTTGGCATATCA+TGG - chr2_2:56890656-56890675 Msa0259650:intron 25.0%
! TTGCAAAATACTAAAACTTG+TGG + chr2_2:56890762-56890781 None:intergenic 25.0%
!! AAGAGTATGTTGAAAAGAAT+TGG - chr2_2:56891107-56891126 Msa0259650:intron 25.0%
! CCACATAAACAAATCAAATT+TGG + chr2_2:56891144-56891163 None:intergenic 25.0%
!!! CCAAATTTGATTTGTTTATG+TGG - chr2_2:56891141-56891160 Msa0259650:intron 25.0%
! TTTAGACAACATGTATGATT+AGG + chr2_2:56891334-56891353 None:intergenic 25.0%
!!! AATTTTGAGGCTATGATTAA+AGG + chr2_2:56891373-56891392 None:intergenic 25.0%
!! ACATGAACTAGTTAATTTTG+AGG + chr2_2:56891386-56891405 None:intergenic 25.0%
! CTTCTCAAATAAAAAACTGA+AGG - chr2_2:56891458-56891477 Msa0259650:intron 25.0%
!! CTAAAACTGATGATTCTTTT+TGG + chr2_2:56891638-56891657 None:intergenic 25.0%
! TTTCTTACACTATCCAATTA+CGG + chr2_2:56891711-56891730 None:intergenic 25.0%
! AAGGATGACAGTAATATAAT+GGG + chr2_2:56891778-56891797 None:intergenic 25.0%
! TAAGGATGACAGTAATATAA+TGG + chr2_2:56891779-56891798 None:intergenic 25.0%
!! TTTAAAATATGGGGATTGTT+TGG - chr2_2:56891868-56891887 Msa0259650:intron 25.0%
GTGACAGTGGAATAATAATT+GGG + chr2_2:56887837-56887856 None:intergenic 30.0%
AGGTGGTGATAAATTAAAGT+TGG + chr2_2:56887866-56887885 None:intergenic 30.0%
AGTTGAATGAATGAATGAGT+GGG + chr2_2:56887899-56887918 None:intergenic 30.0%
TTCCTTCTTCTTCTTGTAAA+GGG + chr2_2:56887922-56887941 None:intergenic 30.0%
ATTCCTTCTTCTTCTTGTAA+AGG + chr2_2:56887923-56887942 None:intergenic 30.0%
AATGTAATTATATGCGGCAT+CGG + chr2_2:56888266-56888285 None:intergenic 30.0%
!!! GCTGTTATTATATTTTGACG+TGG - chr2_2:56888368-56888387 Msa0259650:three_prime_UTR 30.0%
AGCAAAAGAAAGACTAACTT+TGG - chr2_2:56888467-56888486 Msa0259650:three_prime_UTR 30.0%
CTTACTCTCTAATCTATCTT+AGG - chr2_2:56888703-56888722 Msa0259650:intron 30.0%
TAAAAAGAAGCAAGCAATCA+AGG + chr2_2:56889181-56889200 None:intergenic 30.0%
! TTGATTGCTTGCTTCTTTTT+AGG - chr2_2:56889180-56889199 Msa0259650:intron 30.0%
! AATTCTTAATTTGGACACAC+AGG - chr2_2:56889542-56889561 Msa0259650:CDS 30.0%
!! CATAGGAGTATTACAAGATT+TGG - chr2_2:56889805-56889824 Msa0259650:intron 30.0%
ATCATGAATACCGAATATGT+TGG - chr2_2:56890115-56890134 Msa0259650:intron 30.0%
TCATGAATACCGAATATGTT+GGG - chr2_2:56890116-56890135 Msa0259650:intron 30.0%
!!! GCTTTTATTTTAGGGTTTAG+CGG + chr2_2:56890202-56890221 None:intergenic 30.0%
ACAAGCTTATGTTCATGTTA+GGG - chr2_2:56890431-56890450 Msa0259650:CDS 30.0%
ACGAAATACGTAGTATACTT+TGG + chr2_2:56890682-56890701 None:intergenic 30.0%
AGTATGTTGAAAAGAATTGG+TGG - chr2_2:56891110-56891129 Msa0259650:intron 30.0%
ATAATTCCTTTAGGTGGAAA+TGG + chr2_2:56891175-56891194 None:intergenic 30.0%
TCATATAAACATTCACTCAC+TGG + chr2_2:56891504-56891523 None:intergenic 30.0%
! CTTCTTTGTTTGGAATAGAA+AGG + chr2_2:56891557-56891576 None:intergenic 30.0%
TCTAGAGAATCTTCTTTGTT+TGG + chr2_2:56891567-56891586 None:intergenic 30.0%
!! TAATAAAGGATGGTTGGTTT+AGG + chr2_2:56891598-56891617 None:intergenic 30.0%
! ACTTGTTAATAAAGGATGGT+TGG + chr2_2:56891604-56891623 None:intergenic 30.0%
AGAAATGAAATGACCGTAAT+TGG - chr2_2:56891695-56891714 Msa0259650:intron 30.0%
TCTTGAACTAGAGACAAATA+TGG + chr2_2:56891837-56891856 None:intergenic 30.0%
TCTAACCTTTAGCAATATCT+GGG - chr2_2:56891901-56891920 Msa0259650:intron 30.0%
ACCAAATTTACCATTACCAA+TGG - chr2_2:56891979-56891998 Msa0259650:intron 30.0%
ATCCATTATGGAACCAAATT+CGG + chr2_2:56892265-56892284 None:intergenic 30.0%
TTGGATACTACTATCCATTA+TGG + chr2_2:56892277-56892296 None:intergenic 30.0%
ATAGTAGTATCCAATTCTGT+AGG - chr2_2:56892283-56892302 Msa0259650:five_prime_UTR 30.0%
TTAAAAACGACCTACAGAAT+TGG + chr2_2:56892296-56892315 None:intergenic 30.0%
TTAACAAACTCTCGTTTACT+AGG - chr2_2:56892312-56892331 Msa0259650:five_prime_UTR 30.0%
! TACAATATTGTGGATGGGTT+AGG - chr2_2:56887755-56887774 Msa0259650:three_prime_UTR 35.0%
GAAAGTGAAATTGCAATGTG+AGG + chr2_2:56887806-56887825 None:intergenic 35.0%
CGTGACAGTGGAATAATAAT+TGG + chr2_2:56887838-56887857 None:intergenic 35.0%
GAGTTGAATGAATGAATGAG+TGG + chr2_2:56887900-56887919 None:intergenic 35.0%
!!! TCTTTCAAGTGCCCATTTTT+TGG + chr2_2:56888438-56888457 None:intergenic 35.0%
CTTTAACGGAGTTAAGATCA+AGG + chr2_2:56888506-56888525 None:intergenic 35.0%
TCCATTAACGGCTTCTTTAA+CGG + chr2_2:56888520-56888539 None:intergenic 35.0%
CATGTGATTATTTGAACGGA+TGG - chr2_2:56889132-56889151 Msa0259650:intron 35.0%
AATGTCTCTAGTAAGAAGGT+TGG + chr2_2:56889238-56889257 None:intergenic 35.0%
TGACAATGTCTCTAGTAAGA+AGG + chr2_2:56889242-56889261 None:intergenic 35.0%
! GTGGTTTTCACATCATCAAT+TGG - chr2_2:56889639-56889658 Msa0259650:CDS 35.0%
TCAACATCAACACTCCTATT+GGG + chr2_2:56889681-56889700 None:intergenic 35.0%
TCTAGGTGTCTGATATTGAT+TGG - chr2_2:56889942-56889961 Msa0259650:intron 35.0%
ATGCAGTCATATGATTGTGA+TGG - chr2_2:56889988-56890007 Msa0259650:intron 35.0%
TTTAGTTGCCCCAACTATAA+TGG + chr2_2:56890028-56890047 None:intergenic 35.0%
CATGAATACCGAATATGTTG+GGG - chr2_2:56890117-56890136 Msa0259650:intron 35.0%
CACACAAGTGCAAATATGTA+GGG + chr2_2:56890172-56890191 None:intergenic 35.0%
TCACACAAGTGCAAATATGT+AGG + chr2_2:56890173-56890192 None:intergenic 35.0%
TTGTAGAATTGGTACTGCTA+TGG - chr2_2:56890234-56890253 Msa0259650:intron 35.0%
TGTAGAATTGGTACTGCTAT+GGG - chr2_2:56890235-56890254 Msa0259650:intron 35.0%
! AGTTGTAGTGAATCCAGTTT+TGG - chr2_2:56890314-56890333 Msa0259650:intron 35.0%
TTGATTGTAGGTTGTAGCAA+TGG + chr2_2:56890348-56890367 None:intergenic 35.0%
!! ATTGTGCTTGCATTGATTGT+AGG + chr2_2:56890360-56890379 None:intergenic 35.0%
! CACATACTAAAGTACCTAAC+TGG - chr2_2:56890381-56890400 Msa0259650:CDS 35.0%
CACAAGCTTATGTTCATGTT+AGG - chr2_2:56890430-56890449 Msa0259650:CDS 35.0%
TTATGTTCATGTTAGGGATG+TGG - chr2_2:56890437-56890456 Msa0259650:CDS 35.0%
TGACTTACTTGGTAGGAATT+GGG + chr2_2:56890581-56890600 None:intergenic 35.0%
TTAAGAGTGACTTACTTGGT+AGG + chr2_2:56890588-56890607 None:intergenic 35.0%
TTTGGTATCATTACTCACGA+AGG - chr2_2:56890783-56890802 Msa0259650:intron 35.0%
! AATTGGTAACTCACATCACA+TGG + chr2_2:56890842-56890861 None:intergenic 35.0%
TGTGATGTGAGTTACCAATT+AGG - chr2_2:56890842-56890861 Msa0259650:intron 35.0%
ACCAATTAGGTAAAGAGTCA+AGG - chr2_2:56890855-56890874 Msa0259650:intron 35.0%
TCCTTGACTCTTTACCTAAT+TGG + chr2_2:56890859-56890878 None:intergenic 35.0%
TGTTGAAAAGAATTGGTGGA+TGG - chr2_2:56891114-56891133 Msa0259650:intron 35.0%
!! AAGTTGGTGATAAGGACATT+GGG + chr2_2:56891240-56891259 None:intergenic 35.0%
ACCAACTTCTTCCATGAATA+TGG - chr2_2:56891252-56891271 Msa0259650:intron 35.0%
CCAACTTCTTCCATGAATAT+GGG - chr2_2:56891253-56891272 Msa0259650:intron 35.0%
ATTTAGCATGCCCATATTCA+TGG + chr2_2:56891266-56891285 None:intergenic 35.0%
! AGTTCATGTTTTACACATGC+AGG - chr2_2:56891397-56891416 Msa0259650:intron 35.0%
!! AAGATATGTGGTTTTACTCG+AGG + chr2_2:56891441-56891460 None:intergenic 35.0%
! AAAACTGAAGGATTTGGGAT+TGG - chr2_2:56891470-56891489 Msa0259650:intron 35.0%
GTCTAACCTTTAGCAATATC+TGG - chr2_2:56891900-56891919 Msa0259650:intron 35.0%
ACAATCCCAGATATTGCTAA+AGG + chr2_2:56891909-56891928 None:intergenic 35.0%
!! GCCATTGGTAATGGTAAATT+TGG + chr2_2:56891983-56892002 None:intergenic 35.0%
!!! TTTTTCAAGTGCCTACAACA+AGG - chr2_2:56892026-56892045 Msa0259650:CDS 35.0%
!! TGAACCACATGATTTTTGAG+CGG + chr2_2:56892095-56892114 None:intergenic 35.0%
CCAACATCAACAAAACACAA+CGG + chr2_2:56892120-56892139 None:intergenic 35.0%
TCGGACTTTATCATGCAATT+CGG - chr2_2:56892148-56892167 Msa0259650:exon 35.0%
AATGAGTGGGATAGAGAAGA+AGG + chr2_2:56887886-56887905 None:intergenic 40.0%
CTCCCTTTACAAGAAGAAGA+AGG - chr2_2:56887917-56887936 Msa0259650:three_prime_UTR 40.0%
GGAAATTGAGGAAGATTCTG+CGG + chr2_2:56887968-56887987 None:intergenic 40.0%
GCAGAATCTTCCTCAATTTC+CGG - chr2_2:56887967-56887986 Msa0259650:three_prime_UTR 40.0%
GAGAAAGGCTATACTGTTAG+AGG - chr2_2:56888054-56888073 Msa0259650:three_prime_UTR 40.0%
AAATGGGCACTTGAAAGAGT+TGG - chr2_2:56888440-56888459 Msa0259650:three_prime_UTR 40.0%
TCCGTTAAAGAAGCCGTTAA+TGG - chr2_2:56888516-56888535 Msa0259650:CDS 40.0%
GACACCATGACATCCATTAA+CGG + chr2_2:56888532-56888551 None:intergenic 40.0%
ACACTTTGTCTTCGTCTAAG+TGG - chr2_2:56888869-56888888 Msa0259650:intron 40.0%
TGATTATTTGAACGGATGGC+AGG - chr2_2:56889136-56889155 Msa0259650:intron 40.0%
AGAAGCAAGCAATCAAGGTT+TGG + chr2_2:56889176-56889195 None:intergenic 40.0%
! TCTTAATTTGGACACACAGG+AGG - chr2_2:56889545-56889564 Msa0259650:CDS 40.0%
ATCAATTGGCGCAGTCTATA+TGG - chr2_2:56889653-56889672 Msa0259650:CDS 40.0%
CAACATCAACACTCCTATTG+GGG + chr2_2:56889680-56889699 None:intergenic 40.0%
CTCAACATCAACACTCCTAT+TGG + chr2_2:56889682-56889701 None:intergenic 40.0%
!! CAATAGGAGTGTTGATGTTG+AGG - chr2_2:56889680-56889699 Msa0259650:CDS 40.0%
! GGAATTTTGCAAGAACACCA+AGG - chr2_2:56889728-56889747 Msa0259650:CDS 40.0%
GCTACTGATCAATAGGACAT+AGG - chr2_2:56889788-56889807 Msa0259650:intron 40.0%
! GATTGTGATGGAACATGATC+CGG - chr2_2:56890000-56890019 Msa0259650:intron 40.0%
TGATCCGGATCCATTATAGT+TGG - chr2_2:56890015-56890034 Msa0259650:intron 40.0%
GATCCGGATCCATTATAGTT+GGG - chr2_2:56890016-56890035 Msa0259650:intron 40.0%
ATCCGGATCCATTATAGTTG+GGG - chr2_2:56890017-56890036 Msa0259650:intron 40.0%
CAGATACACCCCAACATATT+CGG + chr2_2:56890128-56890147 None:intergenic 40.0%
!!! GTGAATCCAGTTTTGGTTCT+TGG - chr2_2:56890321-56890340 Msa0259650:intron 40.0%
AATGGTCCAAGAACCAAAAC+TGG + chr2_2:56890330-56890349 None:intergenic 40.0%
AGCTTGTGTTGCATTTGCAT+AGG + chr2_2:56890418-56890437 None:intergenic 40.0%
TATGAGAAACCTTCTGCTTC+TGG - chr2_2:56890480-56890499 Msa0259650:CDS 40.0%
AAGTATCTACCAGAAGCAGA+AGG + chr2_2:56890492-56890511 None:intergenic 40.0%
GAATTTCAACAAGCTCTCCA+CGG + chr2_2:56890536-56890555 None:intergenic 40.0%
GTGACTTACTTGGTAGGAAT+TGG + chr2_2:56890582-56890601 None:intergenic 40.0%
TCATTACTCACGAAGGTTAC+TGG - chr2_2:56890790-56890809 Msa0259650:intron 40.0%
AGTGATATGTTGTCACTCCT+AGG - chr2_2:56891010-56891029 Msa0259650:intron 40.0%
TACGTTCCATTTCCACCTAA+AGG - chr2_2:56891166-56891185 Msa0259650:intron 40.0%
!! AGTTGGTGATAAGGACATTG+GGG + chr2_2:56891239-56891258 None:intergenic 40.0%
!! GAAGTTGGTGATAAGGACAT+TGG + chr2_2:56891241-56891260 None:intergenic 40.0%
!! CATGGAAGAAGTTGGTGATA+AGG + chr2_2:56891248-56891267 None:intergenic 40.0%
CCCATATTCATGGAAGAAGT+TGG + chr2_2:56891256-56891275 None:intergenic 40.0%
!! TTGGTCTTGTAGGCTCTTAA+CGG + chr2_2:56891529-56891548 None:intergenic 40.0%
TTGGAATAGAAAGGTGACCT+TGG + chr2_2:56891548-56891567 None:intergenic 40.0%
GTTGTAGGCACTTGAAAAAG+AGG + chr2_2:56892025-56892044 None:intergenic 40.0%
!! ACATGATTTTTGAGCGGACA+TGG + chr2_2:56892089-56892108 None:intergenic 40.0%
ATGTCCGCTCAAAAATCATG+TGG - chr2_2:56892088-56892107 Msa0259650:CDS 40.0%
!! CCGTTGTGTTTTGTTGATGT+TGG - chr2_2:56892117-56892136 Msa0259650:CDS 40.0%
!! GTGTTTTGTTGATGTTGGAG+AGG - chr2_2:56892122-56892141 Msa0259650:CDS 40.0%
GACTTTATCATGCAATTCGG+TGG - chr2_2:56892151-56892170 Msa0259650:exon 40.0%
GTAGCTGATTACTTCAGCAA+AGG - chr2_2:56892225-56892244 Msa0259650:five_prime_UTR 40.0%
! CACCGAATTTGGTTCCATAA+TGG - chr2_2:56892260-56892279 Msa0259650:five_prime_UTR 40.0%
ACAAACTCTCGTTTACTAGG+AGG - chr2_2:56892315-56892334 Msa0259650:five_prime_UTR 40.0%
AATTGAGGAAGATTCTGCGG+CGG + chr2_2:56887965-56887984 None:intergenic 45.0%
TATGGTTTCGCCGGAAATTG+AGG + chr2_2:56887980-56887999 None:intergenic 45.0%
TTGGATGGTTAAGCTCCTCT+TGG - chr2_2:56888032-56888051 Msa0259650:three_prime_UTR 45.0%
GTTAAGCTCCTCTTGGAGAA+AGG - chr2_2:56888039-56888058 Msa0259650:three_prime_UTR 45.0%
CAGTATAGCCTTTCTCCAAG+AGG + chr2_2:56888050-56888069 None:intergenic 45.0%
! TTTTGTACCTGGGTTTCGCA+AGG + chr2_2:56888082-56888101 None:intergenic 45.0%
! GAAGCCGTTAATGGATGTCA+TGG - chr2_2:56888525-56888544 Msa0259650:CDS 45.0%
ACTGACGGGGTTATCTGTAA+CGG + chr2_2:56888571-56888590 None:intergenic 45.0%
!! CAAGGTTTGGTGGTGAGAAT+AGG + chr2_2:56889163-56889182 None:intergenic 45.0%
AGCAAGCAATCAAGGTTTGG+TGG + chr2_2:56889173-56889192 None:intergenic 45.0%
TTTGGACACACAGGAGGAAA+TGG - chr2_2:56889551-56889570 Msa0259650:CDS 45.0%
TTCTTTGCTCCATTCACTGC+TGG + chr2_2:56889582-56889601 None:intergenic 45.0%
CAGTCTATATGGACCCCAAT+AGG - chr2_2:56889664-56889683 Msa0259650:CDS 45.0%
!! TTGAGGTTGATGAGTCTTGC+TGG - chr2_2:56889697-56889716 Msa0259650:CDS 45.0%
TGAGTCTTGCTGGAGTGATT+TGG - chr2_2:56889707-56889726 Msa0259650:CDS 45.0%
!! TGCCCCAACTATAATGGATC+CGG + chr2_2:56890022-56890041 None:intergenic 45.0%
TGGGATGTGGCAAAAGAGAA+AGG - chr2_2:56890282-56890301 Msa0259650:intron 45.0%
GGGATGTGGCAAAAGAGAAA+GGG - chr2_2:56890283-56890302 Msa0259650:intron 45.0%
GGATGTGGCAAAAGAGAAAG+GGG - chr2_2:56890284-56890303 Msa0259650:intron 45.0%
AGGTCTTAGCTGAACCAGTT+AGG + chr2_2:56890398-56890417 None:intergenic 45.0%
TGGTAGGAATTGGGTACTCA+GGG + chr2_2:56890572-56890591 None:intergenic 45.0%
TTGGTAGGAATTGGGTACTC+AGG + chr2_2:56890573-56890592 None:intergenic 45.0%
GTTGTCACTCCTAGGAACAT+TGG - chr2_2:56891018-56891037 Msa0259650:intron 45.0%
AACCAACCACCAATGTTCCT+AGG + chr2_2:56891030-56891049 None:intergenic 45.0%
! TAGGAACATTGGTGGTTGGT+TGG - chr2_2:56891029-56891048 Msa0259650:intron 45.0%
!! TAAGGACATTGGGGTTGGTA+AGG + chr2_2:56891230-56891249 None:intergenic 45.0%
GTTAAGAGCCTACAAGACCA+AGG - chr2_2:56891528-56891547 Msa0259650:CDS 45.0%
!! AAAGGTGACCTTGGTCTTGT+AGG + chr2_2:56891539-56891558 None:intergenic 45.0%
!!! ATCAGTTTTAGCTACCTGCG+AGG - chr2_2:56891647-56891666 Msa0259650:CDS 45.0%
CTTGTTGAGGCCATTGGTAA+TGG + chr2_2:56891992-56892011 None:intergenic 45.0%
!! GATGAACTTGTTGAGGCCAT+TGG + chr2_2:56891998-56892017 None:intergenic 45.0%
!! AGGCATCGATGAACTTGTTG+AGG + chr2_2:56892005-56892024 None:intergenic 45.0%
TCAAGTGCCTACAACAAGGT+TGG - chr2_2:56892030-56892049 Msa0259650:CDS 45.0%
GATTACTTCAGCAAAGGACG+AGG - chr2_2:56892231-56892250 Msa0259650:five_prime_UTR 45.0%
TACTAGGAGGCAAGCAAATG+AGG - chr2_2:56892328-56892347 Msa0259650:five_prime_UTR 45.0%
!!! TTTTTATTTATTTTTATTTG+TGG - chr2_2:56889032-56889051 Msa0259650:intron 5.0%
!! AATAAAATTAAATAAATGAA+GGG + chr2_2:56889767-56889786 None:intergenic 5.0%
!! AAATAAAATTAAATAAATGA+AGG + chr2_2:56889768-56889787 None:intergenic 5.0%
!!! AAAAAAATATAAAGTTTTAT+TGG + chr2_2:56891297-56891316 None:intergenic 5.0%
!! AAGTTGGTGTGACGTGACAG+TGG + chr2_2:56887850-56887869 None:intergenic 50.0%
GAGTGGGATAGAGAAGAAGG+TGG + chr2_2:56887883-56887902 None:intergenic 50.0%
GGTGACACATATGGTTTCGC+CGG + chr2_2:56887989-56888008 None:intergenic 50.0%
GGCGAAACCATATGTGTCAC+CGG - chr2_2:56887988-56888007 Msa0259650:three_prime_UTR 50.0%
TGGCTTCATCGCTTCTTGGA+TGG - chr2_2:56888017-56888036 Msa0259650:three_prime_UTR 50.0%
GGGCACTTGAAAGAGTTGGA+AGG - chr2_2:56888444-56888463 Msa0259650:three_prime_UTR 50.0%
CTGACGGGGTTATCTGTAAC+GGG + chr2_2:56888570-56888589 None:intergenic 50.0%
CTGCAGCAGAAGCAAAAGTG+AGG - chr2_2:56889613-56889632 Msa0259650:CDS 50.0%
AGGGAGGGGAATATTGACCT+TGG + chr2_2:56889748-56889767 None:intergenic 50.0%
GTACTGCTATGGGAAAGCAG+TGG - chr2_2:56890245-56890264 Msa0259650:intron 50.0%
AGTGGCTGAACAAGCAGCAT+GGG - chr2_2:56890263-56890282 Msa0259650:intron 50.0%
TGAACAAGCAGCATGGGATG+TGG - chr2_2:56890269-56890288 Msa0259650:intron 50.0%
TGTGGCAAAAGAGAAAGGGG+TGG - chr2_2:56890287-56890306 Msa0259650:intron 50.0%
GCTGAAAGTTCACTTCACCG+TGG - chr2_2:56890516-56890535 Msa0259650:intron 50.0%
GTCACTCCTAGGAACATTGG+TGG - chr2_2:56891021-56891040 Msa0259650:intron 50.0%
! CTCCTAGGAACATTGGTGGT+TGG - chr2_2:56891025-56891044 Msa0259650:intron 50.0%
GGTGATAAGGACATTGGGGT+TGG + chr2_2:56891235-56891254 None:intergenic 50.0%
TTAGCTACCTGCGAGGCTTT+AGG - chr2_2:56891654-56891673 Msa0259650:intron 50.0%
! TGCCTACAACAAGGTTGGCT+TGG - chr2_2:56892035-56892054 Msa0259650:CDS 50.0%
!! GCCTACAACAAGGTTGGCTT+GGG - chr2_2:56892036-56892055 Msa0259650:CDS 50.0%
!! GTTGATGTTGGAGAGGTGCT+CGG - chr2_2:56892129-56892148 Msa0259650:CDS 50.0%
CGAGGAGATGTCACCGAATT+TGG - chr2_2:56892249-56892268 Msa0259650:five_prime_UTR 50.0%
CCAAGAAGCGATGAAGCCAC+CGG + chr2_2:56888016-56888035 None:intergenic 55.0%
AGAGGAACCTTGCGAAACCC+AGG - chr2_2:56888072-56888091 Msa0259650:three_prime_UTR 55.0%
GGACACACAGGAGGAAATGG+TGG - chr2_2:56889554-56889573 Msa0259650:CDS 55.0%
! ATGGTGGAGCCAGCAGTGAA+TGG - chr2_2:56889570-56889589 Msa0259650:CDS 55.0%
AGAAGCAAAAGTGAGGCGCG+TGG - chr2_2:56889620-56889639 Msa0259650:CDS 55.0%
CAGTGGCTGAACAAGCAGCA+TGG - chr2_2:56890262-56890281 Msa0259650:intron 55.0%
! GCCCAAGCCAACCTTGTTGT+AGG + chr2_2:56892040-56892059 None:intergenic 55.0%
TGAGGAAGATTCTGCGGCGG+CGG + chr2_2:56887962-56887981 None:intergenic 60.0%
ACCATATGTGTCACCGGCGC+CGG - chr2_2:56887994-56888013 Msa0259650:three_prime_UTR 60.0%
CCGGTGGCTTCATCGCTTCT+TGG - chr2_2:56888013-56888032 Msa0259650:three_prime_UTR 60.0%
!! GCGGCATCGGTGTCACGTAT+CGG + chr2_2:56888253-56888272 None:intergenic 60.0%
GCTAGAGCCTAAAGCCTCGC+AGG + chr2_2:56891664-56891683 None:intergenic 60.0%
!! ACCGGCGCCGGTGACACATA+TGG + chr2_2:56887998-56888017 None:intergenic 65.0%
! ATATGTGTCACCGGCGCCGG+TGG - chr2_2:56887997-56888016 Msa0259650:three_prime_UTR 65.0%
GGAAGATTCTGCGGCGGCGG+TGG + chr2_2:56887959-56887978 None:intergenic 70.0%
AGCGATGAAGCCACCGGCGC+CGG + chr2_2:56888010-56888029 None:intergenic 70.0%
! GCGGCGGCGGTGGTAGCAGC+AGG + chr2_2:56887949-56887968 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56887731 56892365 56887731 ID=Msa0259650;Name=Msa0259650
chr2_2 mRNA 56887731 56892365 56887731 ID=Msa0259650-mRNA-1;Parent=Msa0259650;Name=Msa0259650-mRNA-1;_AED=0.04;_eAED=0.04;_QI=212|0.75|0.8|1|0.75|0.8|5|766|321
chr2_2 exon 56887731 56888677 56887731 ID=Msa0259650-mRNA-1:exon:17262;Parent=Msa0259650-mRNA-1
chr2_2 exon 56889504 56889796 56889504 ID=Msa0259650-mRNA-1:exon:17261;Parent=Msa0259650-mRNA-1
chr2_2 exon 56890347 56890532 56890347 ID=Msa0259650-mRNA-1:exon:17260;Parent=Msa0259650-mRNA-1
chr2_2 exon 56891512 56891666 56891512 ID=Msa0259650-mRNA-1:exon:17259;Parent=Msa0259650-mRNA-1
chr2_2 exon 56892003 56892365 56892003 ID=Msa0259650-mRNA-1:exon:17258;Parent=Msa0259650-mRNA-1
chr2_2 five_prime_UTR 56892154 56892365 56892154 ID=Msa0259650-mRNA-1:five_prime_utr;Parent=Msa0259650-mRNA-1
chr2_2 CDS 56892003 56892153 56892003 ID=Msa0259650-mRNA-1:cds;Parent=Msa0259650-mRNA-1
chr2_2 CDS 56891512 56891666 56891512 ID=Msa0259650-mRNA-1:cds;Parent=Msa0259650-mRNA-1
chr2_2 CDS 56890347 56890532 56890347 ID=Msa0259650-mRNA-1:cds;Parent=Msa0259650-mRNA-1
chr2_2 CDS 56889504 56889796 56889504 ID=Msa0259650-mRNA-1:cds;Parent=Msa0259650-mRNA-1
chr2_2 CDS 56888497 56888677 56888497 ID=Msa0259650-mRNA-1:cds;Parent=Msa0259650-mRNA-1
chr2_2 three_prime_UTR 56887731 56888496 56887731 ID=Msa0259650-mRNA-1:three_prime_utr;Parent=Msa0259650-mRNA-1
Gene Sequence

>Msa0259650

ATGCCTGCTGCTACCACCGCCGCCGCAGAATCTTCCTCAATTTCCGGCGAAACCATATGTGTCACCGGCGCCGGTGGCTTCATCGCTTCTTGGATGGTTAAGCTCCTCTTGGAGAAAGGCTATACTGTTAGAGGAACCTTGCGAAACCCAGATGATCCAAAAAATGGGCACTTGAAAGAGTTGGAAGGAGCAAAAGAAAGACTAACTTTGGTCAAAGTTGATCTCCTTGATCTTAACTCCGTTAAAGAAGCCGTTAATGGATGTCATGGTGTCTTTCACACTGCTTCTCCCGTTACAGATAACCCCGAGGAAATGGTGGAGCCAGCAGTGAATGGAGCAAAGAATGTGATCATAGCTGCAGCAGAAGCAAAAGTGAGGCGCGTGGTTTTCACATCATCAATTGGCGCAGTCTATATGGACCCCAATAGGAGTGTTGATGTTGAGGTTGATGAGTCTTGCTGGAGTGATTTGGAATTTTGCAAGAACACCAAGAAAGGGGTGGATTTAGTTGTAGTGAATCCAGTTTTGGTTCTTGGACCATTGCTACAACCTACAATCAATGCAAGCACAATTCACATACTAAAGTACCTAACTGGTTCAGCTAAGACCTATGCAAATGCAACACAAGCTTATGTTCATGTTAGGGATGTGGCATTAGCTCACATACTTGTTTATGAGAAACCTTCTGCTTCTGGTAGATACTTATGTGCTGAAAGTTCACTTCACCGTGGAGAGCTTGTTGAAATTCTTGCTAAGTATTTCCCTGAGTACCCAATTCCTACCAAGTGTTCAGATGAAAAGAATCCTCGAGTAAAACCACATATCTTCTCAAATAAAAAACTGAAGGATTTGGGATTGGAGTTCACTCCAGTGAGTGAATGTTTATATGAAACCGTTAAGAGCCTACAAGACCAAGGTCACCTTTCTATTCCAAACAAAGAAGATTCTCTAGAAGTCAAATCCTAA
Protein sequence

>Msa0259650

MPAATTAAAESSSISGETICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNGHLKELEGAKERLTLVKVDLLDLNSVKEAVNGCHGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPNRSVDVEVDESCWSDLEFCKNTKKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFTPVSECLYETVKSLQDQGHLSIPNKEDSLEVKS*