Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259960 | AFK34336.1 | 82.051 | 156 | 21 | 2 | 7 | 155 | 8 | 163 | 9.34e-51 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259960 | I3S244 | 82.051 | 156 | 21 | 2 | 7 | 155 | 8 | 163 | 4.46e-51 | 170 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0259960 | Msa0339840 | 0.810514 | 1.109740e-50 | -8.615850e-47 |
| Msa0259960 | Msa0484780 | 0.804701 | 1.903983e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259960 | MtrunA17_Chr5g0412581 | 81.529 | 157 | 21 | 2 | 7 | 155 | 8 | 164 | 1.26e-54 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTGGACTAGTGCTTT+TGG | 0.225862 | 2_2:-57433600 | Msa0259960:CDS |
| AGCATCGCGGGTTATAGTTT+GGG | 0.348033 | 2_2:+57434812 | None:intergenic |
| GAGCATCGCGGGTTATAGTT+TGG | 0.349832 | 2_2:+57434811 | None:intergenic |
| CCGCGATGCTCGCACAATTA+CGG | 0.385032 | 2_2:-57434799 | Msa0259960:CDS |
| TCATCGCGAGGTGGCAATCC+AGG | 0.423266 | 2_2:+57433665 | None:intergenic |
| CGTCTCATCGCAACAATGTT+CGG | 0.426602 | 2_2:+57436026 | None:intergenic |
| AGACTTGATGACAATGGGCC+TGG | 0.438601 | 2_2:-57433683 | Msa0259960:CDS |
| CGTAATTGTGCGAGCATCGC+GGG | 0.445247 | 2_2:+57434800 | None:intergenic |
| CATCGCAACAATGTTCGGTC+TGG | 0.462516 | 2_2:+57436031 | None:intergenic |
| ATTAAAATGTGACGCTGCTA+TGG | 0.476209 | 2_2:-57435940 | Msa0259960:intron |
| GATGATGGCAATGGTGGTAA+TGG | 0.479364 | 2_2:-57433644 | Msa0259960:CDS |
| GGTAATGGAGGAGTCGGTGG+TGG | 0.489810 | 2_2:-57433629 | Msa0259960:CDS |
| AGATTAGACTTGATGACAAT+GGG | 0.494836 | 2_2:-57433688 | Msa0259960:CDS |
| CAATGTCTTTAAGAATGTCT+AGG | 0.523559 | 2_2:+57433564 | None:intergenic |
| AAGATTAGACTTGATGACAA+TGG | 0.549867 | 2_2:-57433689 | Msa0259960:CDS |
| TTGCCACCTCGCGATGATGA+TGG | 0.559704 | 2_2:-57433659 | Msa0259960:CDS |
| CGCACAATTACGGTTACTCC+TGG | 0.560145 | 2_2:-57434789 | Msa0259960:intron |
| GGTGGTAATGGAGGAGTCGG+TGG | 0.568547 | 2_2:-57433632 | Msa0259960:CDS |
| GATGGCAATGGTGGTAATGG+AGG | 0.573756 | 2_2:-57433641 | Msa0259960:CDS |
| AATCAGTGCAAGTCGAACTC+AGG | 0.597432 | 2_2:-57436069 | Msa0259960:CDS |
| AATGGTGGTAATGGAGGAGT+CGG | 0.609167 | 2_2:-57433635 | Msa0259960:CDS |
| CGCGATGATGATGGCAATGG+TGG | 0.625985 | 2_2:-57433650 | Msa0259960:CDS |
| CCGTAATTGTGCGAGCATCG+CGG | 0.652509 | 2_2:+57434799 | None:intergenic |
| CCTCGCGATGATGATGGCAA+TGG | 0.672251 | 2_2:-57433653 | Msa0259960:CDS |
| TTGCCATCATCATCGCGAGG+TGG | 0.693677 | 2_2:+57433656 | None:intergenic |
| CCATTGCCATCATCATCGCG+AGG | 0.721489 | 2_2:+57433653 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTTTTATTTTTTTTGT+TGG | - | chr2_2:57433517-57433536 | Msa0259960:CDS | 10.0% |
| !! | ATATGAATATTTCATAATTA+AGG | - | chr2_2:57435147-57435166 | Msa0259960:intron | 10.0% |
| !! | ATACCATATAACATAAAAAA+AGG | - | chr2_2:57433622-57433641 | Msa0259960:CDS | 15.0% |
| !! | TACCATATAACATAAAAAAA+GGG | - | chr2_2:57433623-57433642 | Msa0259960:CDS | 15.0% |
| !!! | ATCAATTAACAGTTTTATTT+TGG | + | chr2_2:57433891-57433910 | None:intergenic | 15.0% |
| !! | TATATCATAATCCAATATAA+CGG | - | chr2_2:57434039-57434058 | Msa0259960:intron | 15.0% |
| !! | AAAAAAACTAATAAGATTGT+AGG | + | chr2_2:57435502-57435521 | None:intergenic | 15.0% |
| !! | CAGAATAAAAAATCAATTAA+GGG | + | chr2_2:57435838-57435857 | None:intergenic | 15.0% |
| !! | ACAGAATAAAAAATCAATTA+AGG | + | chr2_2:57435839-57435858 | None:intergenic | 15.0% |
| !!! | TATGGTATGGTTTTTTATTT+TGG | - | chr2_2:57433702-57433721 | Msa0259960:intron | 20.0% |
| !!! | TGAATAATTTTTATCTTGCA+AGG | - | chr2_2:57433910-57433929 | Msa0259960:intron | 20.0% |
| !!! | GAATAATTTTTATCTTGCAA+GGG | - | chr2_2:57433911-57433930 | Msa0259960:intron | 20.0% |
| !!! | AATAATTTTTATCTTGCAAG+GGG | - | chr2_2:57433912-57433931 | Msa0259960:intron | 20.0% |
| !! | TTAAAGGAAAATAACAAGAA+TGG | + | chr2_2:57434350-57434369 | None:intergenic | 20.0% |
| !!! | ATTTTTTATAGGATGGAATA+TGG | - | chr2_2:57434606-57434625 | Msa0259960:intron | 20.0% |
| !!! | ATGGAAATTTTGGATTTTAT+TGG | - | chr2_2:57434674-57434693 | Msa0259960:intron | 20.0% |
| !! | CAACAACAGTAAATTTATAA+AGG | - | chr2_2:57435391-57435410 | Msa0259960:intron | 20.0% |
| !!! | TAAAGGATTTTGATATTAGA+AGG | - | chr2_2:57435408-57435427 | Msa0259960:intron | 20.0% |
| !!! | AATTGCTAATTTTGTAGAAA+AGG | + | chr2_2:57435792-57435811 | None:intergenic | 20.0% |
| !! | TATATTTGTATACATAGACA+AGG | + | chr2_2:57435882-57435901 | None:intergenic | 20.0% |
| !!! | TGCCCTTTTTTTATGTTATA+TGG | + | chr2_2:57433628-57433647 | None:intergenic | 25.0% |
| ! | ATGCTATATGATATTCTTGT+TGG | - | chr2_2:57433798-57433817 | Msa0259960:intron | 25.0% |
| !! | TCTATTTTCCTATTCTATCT+GGG | + | chr2_2:57434161-57434180 | None:intergenic | 25.0% |
| !! | ATCTATTTTCCTATTCTATC+TGG | + | chr2_2:57434162-57434181 | None:intergenic | 25.0% |
| !!! | TTTCTGTAGGCATTTTTTAT+AGG | - | chr2_2:57434595-57434614 | Msa0259960:intron | 25.0% |
| ! | AATCCAAAATTTCCATGATT+CGG | + | chr2_2:57434670-57434689 | None:intergenic | 25.0% |
| ! | ACTTATCCAAAATTGTTTGT+TGG | - | chr2_2:57434719-57434738 | Msa0259960:intron | 25.0% |
| !!! | TCCAACATCATATCATTTTT+TGG | + | chr2_2:57434888-57434907 | None:intergenic | 25.0% |
| !!! | TTGTATTGTTTGTTTTACAC+TGG | - | chr2_2:57434935-57434954 | Msa0259960:intron | 25.0% |
| !!! | TGTATTGTTTGTTTTACACT+GGG | - | chr2_2:57434936-57434955 | Msa0259960:intron | 25.0% |
| ! | ATGATGACTAGTATAGAAAA+TGG | + | chr2_2:57435005-57435024 | None:intergenic | 25.0% |
| ! | TCAATAAAAACACTGATGTA+TGG | + | chr2_2:57435080-57435099 | None:intergenic | 25.0% |
| !! | CATTTGAAGTGCATAAATAA+TGG | - | chr2_2:57435208-57435227 | Msa0259960:intron | 25.0% |
| !!! | AACAGGGGATTTTTATTTTT+TGG | - | chr2_2:57435472-57435491 | Msa0259960:intron | 25.0% |
| ! | ATAGCATTTGTCATAATATG+TGG | - | chr2_2:57435725-57435744 | Msa0259960:intron | 25.0% |
| TGTTTGCTTTCTTTATGCTA+TGG | - | chr2_2:57433736-57433755 | Msa0259960:intron | 30.0% | |
| ! | ATCAGTCCTTTTTGATAAGT+TGG | - | chr2_2:57433858-57433877 | Msa0259960:intron | 30.0% |
| !!! | TCCTTTTTGATAAGTTGGTA+AGG | - | chr2_2:57433863-57433882 | Msa0259960:intron | 30.0% |
| ACCTTACCAACTTATCAAAA+AGG | + | chr2_2:57433867-57433886 | None:intergenic | 30.0% | |
| ATCAGGTTTCTTCTATAGTA+AGG | + | chr2_2:57434132-57434151 | None:intergenic | 30.0% | |
| CTATCAGAAACATATCTGAA+TGG | + | chr2_2:57434245-57434264 | None:intergenic | 30.0% | |
| ! | CATTCAGATATGTTTCTGAT+AGG | - | chr2_2:57434243-57434262 | Msa0259960:intron | 30.0% |
| TAGGATTCAACAGAAGTTAA+AGG | + | chr2_2:57434366-57434385 | None:intergenic | 30.0% | |
| AAGTTTCATATGTATGAGAG+TGG | + | chr2_2:57434509-57434528 | None:intergenic | 30.0% | |
| !!! | TGTTCCATTGATTTTTCTGT+AGG | - | chr2_2:57434582-57434601 | Msa0259960:intron | 30.0% |
| AATGCCTACAGAAAAATCAA+TGG | + | chr2_2:57434589-57434608 | None:intergenic | 30.0% | |
| !!! | TGTAGGCATTTTTTATAGGA+TGG | - | chr2_2:57434599-57434618 | Msa0259960:intron | 30.0% |
| ! | AATCCGAATCATGGAAATTT+TGG | - | chr2_2:57434664-57434683 | Msa0259960:intron | 30.0% |
| ATGTAACATTCTGTAGAAAG+GGG | + | chr2_2:57434774-57434793 | None:intergenic | 30.0% | |
| CATGTAACATTCTGTAGAAA+GGG | + | chr2_2:57434775-57434794 | None:intergenic | 30.0% | |
| ACATGTAACATTCTGTAGAA+AGG | + | chr2_2:57434776-57434795 | None:intergenic | 30.0% | |
| GCCAAAAAATGATATGATGT+TGG | - | chr2_2:57434884-57434903 | Msa0259960:intron | 30.0% | |
| ACTAGTATAGAAAATGGAAG+AGG | + | chr2_2:57434999-57435018 | None:intergenic | 30.0% | |
| CTAAATCAATATCAAAGCGT+AGG | - | chr2_2:57435105-57435124 | Msa0259960:intron | 30.0% | |
| TGCATAAATAATGGCTTTCT+TGG | - | chr2_2:57435217-57435236 | Msa0259960:intron | 30.0% | |
| CAATGTAAAGAAGCTAGAAA+AGG | - | chr2_2:57435353-57435372 | Msa0259960:intron | 30.0% | |
| AAATCTGTCTACTTAACTGA+AGG | - | chr2_2:57435448-57435467 | Msa0259960:intron | 30.0% | |
| AATCTGTCTACTTAACTGAA+GGG | - | chr2_2:57435449-57435468 | Msa0259960:intron | 30.0% | |
| ACAAAACACTATCTACAGAA+GGG | + | chr2_2:57435551-57435570 | None:intergenic | 30.0% | |
| TACAAAACACTATCTACAGA+AGG | + | chr2_2:57435552-57435571 | None:intergenic | 30.0% | |
| ! | GTTTGTTTGATGGTTTCTTA+TGG | - | chr2_2:57435628-57435647 | Msa0259960:intron | 30.0% |
| CATTTGTCATAATATGTGGA+CGG | - | chr2_2:57435729-57435748 | Msa0259960:intron | 30.0% | |
| ! | AAATGAATAGAGTTGAGTTG+TGG | + | chr2_2:57435768-57435787 | None:intergenic | 30.0% |
| !! | ATCTTTTTGTCTGTCATTTC+AGG | + | chr2_2:57435920-57435939 | None:intergenic | 30.0% |
| ! | AAGATTAGACTTGATGACAA+TGG | - | chr2_2:57435935-57435954 | Msa0259960:intron | 30.0% |
| ! | AGATTAGACTTGATGACAAT+GGG | - | chr2_2:57435936-57435955 | Msa0259960:intron | 30.0% |
| ! | CAATGTCTTTAAGAATGTCT+AGG | + | chr2_2:57436063-57436082 | None:intergenic | 30.0% |
| ATTAAAATGTGACGCTGCTA+TGG | - | chr2_2:57433684-57433703 | Msa0259960:CDS | 35.0% | |
| GCTTTCTTTATGCTATGGTA+TGG | - | chr2_2:57433741-57433760 | Msa0259960:intron | 35.0% | |
| !! | TTACCGGTGTTGTCAAATAT+CGG | - | chr2_2:57433946-57433965 | Msa0259960:intron | 35.0% |
| GATATAAAATCCCGCCATAT+TGG | + | chr2_2:57434025-57434044 | None:intergenic | 35.0% | |
| ATCGAAAACCCAGATAGAAT+AGG | - | chr2_2:57434150-57434169 | Msa0259960:intron | 35.0% | |
| AAACATATCTGAATGGTCAG+TGG | + | chr2_2:57434238-57434257 | None:intergenic | 35.0% | |
| ! | CTTTTGCACAAAAGGTCAAA+AGG | + | chr2_2:57434272-57434291 | None:intergenic | 35.0% |
| ! | CTTTTGACCTTTTGTGCAAA+AGG | - | chr2_2:57434270-57434289 | Msa0259960:intron | 35.0% |
| ! | ACATAGACCTTTTGCACAAA+AGG | + | chr2_2:57434280-57434299 | None:intergenic | 35.0% |
| TTGTGCAAAAGGTCTATGTT+AGG | - | chr2_2:57434281-57434300 | Msa0259960:intron | 35.0% | |
| GATCAAGATAGGAAAGTGAT+AGG | + | chr2_2:57434385-57434404 | None:intergenic | 35.0% | |
| GCAATGAAGAAATTGGAACT+AGG | + | chr2_2:57434478-57434497 | None:intergenic | 35.0% | |
| ACAAGAGGCAATGAAGAAAT+TGG | + | chr2_2:57434485-57434504 | None:intergenic | 35.0% | |
| CTTACTTTCAATCCGAATCA+TGG | - | chr2_2:57434655-57434674 | Msa0259960:intron | 35.0% | |
| ! | CGTAGACCAACAAACAATTT+TGG | + | chr2_2:57434728-57434747 | None:intergenic | 35.0% |
| CGATATTCTGATGTCTTGTA+TGG | - | chr2_2:57434746-57434765 | Msa0259960:intron | 35.0% | |
| !! | TTTGAGTTGGACTTATTACC+AGG | + | chr2_2:57434856-57434875 | None:intergenic | 35.0% |
| !!! | TTGGCAGAAGTTTTTTGAGT+TGG | + | chr2_2:57434869-57434888 | None:intergenic | 35.0% |
| ACTAGGATGCATGATTGTAA+AGG | + | chr2_2:57435250-57435269 | None:intergenic | 35.0% | |
| !! | TTCTAGCTTCTTTACATTGC+AGG | + | chr2_2:57435352-57435371 | None:intergenic | 35.0% |
| TTGTAGTCTGTTTCCTAGAA+TGG | - | chr2_2:57435567-57435586 | Msa0259960:intron | 35.0% | |
| AACTGAAACGAAACCATTCT+AGG | + | chr2_2:57435583-57435602 | None:intergenic | 35.0% | |
| AACCATCAAACAAACACACT+TGG | + | chr2_2:57435623-57435642 | None:intergenic | 35.0% | |
| ! | TGTTTGATGGTTTCTTATGG+AGG | - | chr2_2:57435631-57435650 | Msa0259960:intron | 35.0% |
| GATATTTGACAACACCGGTA+AGG | + | chr2_2:57433947-57433966 | None:intergenic | 40.0% | |
| ATATTGGCCGAAATTTGGCA+TGG | + | chr2_2:57434009-57434028 | None:intergenic | 40.0% | |
| ATGCCAAATTTCGGCCAATA+TGG | - | chr2_2:57434008-57434027 | Msa0259960:intron | 40.0% | |
| ! | TTCTATCTGGGTTTTCGATC+AGG | + | chr2_2:57434149-57434168 | None:intergenic | 40.0% |
| ! | TGCTTGTTGCAGTCTCTATT+AGG | + | chr2_2:57434197-57434216 | None:intergenic | 40.0% |
| TAATAGAGACTGCAACAAGC+AGG | - | chr2_2:57434196-57434215 | Msa0259960:intron | 40.0% | |
| TGCAAAAGGTCTATGTTAGG+AGG | - | chr2_2:57434284-57434303 | Msa0259960:intron | 40.0% | |
| GCAAAAGGTCTATGTTAGGA+GGG | - | chr2_2:57434285-57434304 | Msa0259960:intron | 40.0% | |
| CAAAAGGTCTATGTTAGGAG+GGG | - | chr2_2:57434286-57434305 | Msa0259960:intron | 40.0% | |
| AAACAGTTAGCAGCATGTGA+CGG | + | chr2_2:57434413-57434432 | None:intergenic | 40.0% | |
| GAACTAGGAAGAGACTAAAG+TGG | + | chr2_2:57434463-57434482 | None:intergenic | 40.0% | |
| ATGTATGAGAGTGGTACAAG+AGG | + | chr2_2:57434500-57434519 | None:intergenic | 40.0% | |
| ! | TGTTTTACACTGGGACAAAC+TGG | - | chr2_2:57434945-57434964 | Msa0259960:intron | 40.0% |
| CAATCATGCATCCTAGTGAT+TGG | - | chr2_2:57435253-57435272 | Msa0259960:intron | 40.0% | |
| TGTAGGTCATACCAATCACT+AGG | + | chr2_2:57435267-57435286 | None:intergenic | 40.0% | |
| AACTATGTCCCATTGAGTCA+TGG | + | chr2_2:57435294-57435313 | None:intergenic | 40.0% | |
| ATGACTCAATGGGACATAGT+TGG | - | chr2_2:57435293-57435312 | Msa0259960:intron | 40.0% | |
| ! | CAATGGGACATAGTTGGTTT+AGG | - | chr2_2:57435299-57435318 | Msa0259960:intron | 40.0% |
| ! | ATAGTTGGTTTAGGCGATAG+AGG | - | chr2_2:57435308-57435327 | Msa0259960:intron | 40.0% |
| TCTACTTAACTGAAGGGAAC+AGG | - | chr2_2:57435455-57435474 | Msa0259960:intron | 40.0% | |
| CTACTTAACTGAAGGGAACA+GGG | - | chr2_2:57435456-57435475 | Msa0259960:intron | 40.0% | |
| TACTTAACTGAAGGGAACAG+GGG | - | chr2_2:57435457-57435476 | Msa0259960:intron | 40.0% | |
| GTCCAAGTGTGTTTGTTTGA+TGG | - | chr2_2:57435618-57435637 | Msa0259960:intron | 40.0% | |
| !! | GGAGGTTTCTTTTGAAGAAC+TGG | - | chr2_2:57435649-57435668 | Msa0259960:intron | 40.0% |
| !! | CTAGTGCTTTTGGGTATTCT+TGG | - | chr2_2:57436034-57436053 | Msa0259960:CDS | 40.0% |
| AATCAGTGCAAGTCGAACTC+AGG | - | chr2_2:57433555-57433574 | Msa0259960:CDS | 45.0% | |
| CGTCTCATCGCAACAATGTT+CGG | + | chr2_2:57433601-57433620 | None:intergenic | 45.0% | |
| !! | GCAGCGTCACATTTTAATCG+AGG | + | chr2_2:57433682-57433701 | None:intergenic | 45.0% |
| AATGTGACGCTGCTATGGTA+TGG | - | chr2_2:57433689-57433708 | Msa0259960:CDS | 45.0% | |
| AGGGGAGCTTAATTCCTTAC+CGG | - | chr2_2:57433930-57433949 | Msa0259960:intron | 45.0% | |
| TGGCCGATATTTGACAACAC+CGG | + | chr2_2:57433952-57433971 | None:intergenic | 45.0% | |
| GTGTTGTCAAATATCGGCCA+TGG | - | chr2_2:57433952-57433971 | Msa0259960:intron | 45.0% | |
| TTGTCAAATATCGGCCATGG+TGG | - | chr2_2:57433955-57433974 | Msa0259960:intron | 45.0% | |
| !! | ATATCGGCCATGGTGGATAT+TGG | - | chr2_2:57433962-57433981 | Msa0259960:intron | 45.0% |
| !!! | TGGATATTGGTGGTGGCTTT+TGG | - | chr2_2:57433975-57433994 | Msa0259960:intron | 45.0% |
| !!! | GGATATTGGTGGTGGCTTTT+GGG | - | chr2_2:57433976-57433995 | Msa0259960:intron | 45.0% |
| CCAAATTTCGGCCAATATGG+CGG | - | chr2_2:57434011-57434030 | Msa0259960:intron | 45.0% | |
| CAAATTTCGGCCAATATGGC+GGG | - | chr2_2:57434012-57434031 | Msa0259960:intron | 45.0% | |
| ACTTTGTGGCGCCGTTATAT+TGG | + | chr2_2:57434053-57434072 | None:intergenic | 45.0% | |
| AATATAACGGCGCCACAAAG+TGG | - | chr2_2:57434052-57434071 | Msa0259960:intron | 45.0% | |
| ATCTGAATGGTCAGTGGTCT+TGG | + | chr2_2:57434232-57434251 | None:intergenic | 45.0% | |
| ! | TGACGGGTAAGGATCAAGAT+AGG | + | chr2_2:57434396-57434415 | None:intergenic | 45.0% |
| AACAGTTAGCAGCATGTGAC+GGG | + | chr2_2:57434412-57434431 | None:intergenic | 45.0% | |
| CTAGGAAGAGACTAAAGTGG+AGG | + | chr2_2:57434460-57434479 | None:intergenic | 45.0% | |
| ! | AGCATCGCGGGTTATAGTTT+GGG | + | chr2_2:57434815-57434834 | None:intergenic | 45.0% |
| TTTAGCACCTCCCAATGTGT+TGG | - | chr2_2:57434973-57434992 | Msa0259960:intron | 45.0% | |
| ATGGAAGAGGCCAACACATT+GGG | + | chr2_2:57434986-57435005 | None:intergenic | 45.0% | |
| AATGGAAGAGGCCAACACAT+TGG | + | chr2_2:57434987-57435006 | None:intergenic | 45.0% | |
| TACAGCCTCCATGACTCAAT+GGG | - | chr2_2:57435283-57435302 | Msa0259960:intron | 45.0% | |
| TATGTCCCATTGAGTCATGG+AGG | + | chr2_2:57435291-57435310 | None:intergenic | 45.0% | |
| ! | GATGATGGCAATGGTGGTAA+TGG | - | chr2_2:57435980-57435999 | Msa0259960:CDS | 45.0% |
| !! | AATGGTGGTAATGGAGGAGT+CGG | - | chr2_2:57435989-57436008 | Msa0259960:CDS | 45.0% |
| !! | GTCGGTGGTGGTAATTTTTC+AGG | - | chr2_2:57436007-57436026 | Msa0259960:CDS | 45.0% |
| !!! | GGTGGTGGTAATTTTTCAGG+TGG | - | chr2_2:57436010-57436029 | Msa0259960:CDS | 45.0% |
| !!! | TTCAGGTGGACTAGTGCTTT+TGG | - | chr2_2:57436024-57436043 | Msa0259960:CDS | 45.0% |
| !!! | TCAGGTGGACTAGTGCTTTT+GGG | - | chr2_2:57436025-57436044 | Msa0259960:CDS | 45.0% |
| CATCGCAACAATGTTCGGTC+TGG | + | chr2_2:57433596-57433615 | None:intergenic | 50.0% | |
| CTCACCGCCATGCCAAATTT+CGG | - | chr2_2:57433999-57434018 | Msa0259960:intron | 50.0% | |
| TTGGCCGAAATTTGGCATGG+CGG | + | chr2_2:57434006-57434025 | None:intergenic | 50.0% | |
| CCGCCATATTGGCCGAAATT+TGG | + | chr2_2:57434014-57434033 | None:intergenic | 50.0% | |
| GAGCCAAAATCCTGCCAAAC+CGG | + | chr2_2:57434078-57434097 | None:intergenic | 50.0% | |
| GTAAGGAGCAGTGTTGCCAA+TGG | + | chr2_2:57434115-57434134 | None:intergenic | 50.0% | |
| !! | TTAGCAGCATGTGACGGGTA+AGG | + | chr2_2:57434407-57434426 | None:intergenic | 50.0% |
| ! | GAGCATCGCGGGTTATAGTT+TGG | + | chr2_2:57434816-57434835 | None:intergenic | 50.0% |
| CGCACAATTACGGTTACTCC+TGG | - | chr2_2:57434835-57434854 | Msa0259960:CDS | 50.0% | |
| CATTGAGTCATGGAGGCTGT+AGG | + | chr2_2:57435284-57435303 | None:intergenic | 50.0% | |
| CTACAGCCTCCATGACTCAA+TGG | - | chr2_2:57435282-57435301 | Msa0259960:intron | 50.0% | |
| ! | GTTGGTTTAGGCGATAGAGG+TGG | - | chr2_2:57435311-57435330 | Msa0259960:intron | 50.0% |
| ! | AGACTTGATGACAATGGGCC+TGG | - | chr2_2:57435941-57435960 | Msa0259960:CDS | 50.0% |
| !! | GATGGCAATGGTGGTAATGG+AGG | - | chr2_2:57435983-57436002 | Msa0259960:CDS | 50.0% |
| !! | TCGGCCATGGTGGATATTGG+TGG | - | chr2_2:57433965-57433984 | Msa0259960:intron | 55.0% |
| !! | GCCATGGTGGATATTGGTGG+TGG | - | chr2_2:57433968-57433987 | Msa0259960:intron | 55.0% |
| GCCACCACCAATATCCACCA+TGG | + | chr2_2:57433972-57433991 | None:intergenic | 55.0% | |
| !!! | TGGCCGGTTTGGCAGGATTT+TGG | - | chr2_2:57434072-57434091 | Msa0259960:intron | 55.0% |
| !!! | AGGATTTTGGCTCTCCGCCA+TGG | - | chr2_2:57434085-57434104 | Msa0259960:intron | 55.0% |
| AGGAGCAGTGTTGCCAATGG+CGG | + | chr2_2:57434112-57434131 | None:intergenic | 55.0% | |
| ! | CGTAATTGTGCGAGCATCGC+GGG | + | chr2_2:57434827-57434846 | None:intergenic | 55.0% |
| ! | CCGTAATTGTGCGAGCATCG+CGG | + | chr2_2:57434828-57434847 | None:intergenic | 55.0% |
| CCGCGATGCTCGCACAATTA+CGG | - | chr2_2:57434825-57434844 | Msa0259960:CDS | 55.0% | |
| GAAGAGGCCAACACATTGGG+AGG | + | chr2_2:57434983-57435002 | None:intergenic | 55.0% | |
| TTGCCACCTCGCGATGATGA+TGG | - | chr2_2:57435965-57435984 | Msa0259960:CDS | 55.0% | |
| TTGCCATCATCATCGCGAGG+TGG | + | chr2_2:57435971-57435990 | None:intergenic | 55.0% | |
| CCATTGCCATCATCATCGCG+AGG | + | chr2_2:57435974-57435993 | None:intergenic | 55.0% | |
| !! | CCTCGCGATGATGATGGCAA+TGG | - | chr2_2:57435971-57435990 | Msa0259960:CDS | 55.0% |
| !! | CGCGATGATGATGGCAATGG+TGG | - | chr2_2:57435974-57435993 | Msa0259960:CDS | 55.0% |
| TAACGGCGCCACAAAGTGGC+CGG | - | chr2_2:57434056-57434075 | Msa0259960:intron | 60.0% | |
| ! | CTGCCAAACCGGCCACTTTG+TGG | + | chr2_2:57434067-57434086 | None:intergenic | 60.0% |
| !! | CACAAAGTGGCCGGTTTGGC+AGG | - | chr2_2:57434065-57434084 | Msa0259960:intron | 60.0% |
| TTGCCAATGGCGGTCCATGG+CGG | + | chr2_2:57434102-57434121 | None:intergenic | 60.0% | |
| GTGTTGCCAATGGCGGTCCA+TGG | + | chr2_2:57434105-57434124 | None:intergenic | 60.0% | |
| TCATCGCGAGGTGGCAATCC+AGG | + | chr2_2:57435962-57435981 | None:intergenic | 60.0% | |
| !! | GGTGGTAATGGAGGAGTCGG+TGG | - | chr2_2:57435992-57436011 | Msa0259960:CDS | 60.0% |
| !! | GGTAATGGAGGAGTCGGTGG+TGG | - | chr2_2:57435995-57436014 | Msa0259960:CDS | 60.0% |
| GCGCCACAAAGTGGCCGGTT+TGG | - | chr2_2:57434061-57434080 | Msa0259960:intron | 65.0% | |
| TCTCCGCCATGGACCGCCAT+TGG | - | chr2_2:57434096-57434115 | Msa0259960:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57433514 | 57436132 | 57433514 | ID=Msa0259960;Name=Msa0259960 |
| chr2_2 | mRNA | 57433514 | 57436132 | 57433514 | ID=Msa0259960-mRNA-1;Parent=Msa0259960;Name=Msa0259960-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|3|0|155 |
| chr2_2 | exon | 57435941 | 57436132 | 57435941 | ID=Msa0259960-mRNA-1:exon:17457;Parent=Msa0259960-mRNA-1 |
| chr2_2 | exon | 57434790 | 57434862 | 57434790 | ID=Msa0259960-mRNA-1:exon:17456;Parent=Msa0259960-mRNA-1 |
| chr2_2 | exon | 57433514 | 57433716 | 57433514 | ID=Msa0259960-mRNA-1:exon:17455;Parent=Msa0259960-mRNA-1 |
| chr2_2 | CDS | 57435941 | 57436132 | 57435941 | ID=Msa0259960-mRNA-1:cds;Parent=Msa0259960-mRNA-1 |
| chr2_2 | CDS | 57434790 | 57434862 | 57434790 | ID=Msa0259960-mRNA-1:cds;Parent=Msa0259960-mRNA-1 |
| chr2_2 | CDS | 57433514 | 57433716 | 57433514 | ID=Msa0259960-mRNA-1:cds;Parent=Msa0259960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
