Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339840 | AFK34336.1 | 78.022 | 182 | 19 | 2 | 1 | 180 | 1 | 163 | 5.09e-59 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0259960 | Msa0339840 | 0.810514 | 1.109740e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339840 | MtrunA17_Chr5g0412581 | 77.596 | 183 | 19 | 2 | 1 | 180 | 1 | 164 | 6.86e-63 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTGGACTAGTGCTTT+TGG | 0.225862 | 2_4:-61115026 | Msa0339840:CDS |
| AGCATCGCGGGTTATAGTTT+GGG | 0.348033 | 2_4:+61116238 | None:intergenic |
| GAGCATCGCGGGTTATAGTT+TGG | 0.349832 | 2_4:+61116237 | None:intergenic |
| TAGTTTATATAAATCATTCA+TGG | 0.359533 | 2_4:-61117582 | Msa0339840:CDS |
| CCGCGATGCTCGCACAATTA+CGG | 0.385032 | 2_4:-61116225 | Msa0339840:CDS |
| CGTCTCATCGCAACAATGTT+CGG | 0.426602 | 2_4:+61117478 | None:intergenic |
| ACACCAACGCACAATATTGT+TGG | 0.430197 | 2_4:-61117690 | Msa0339840:CDS |
| TCGTCGCGAGGTGGCAATCC+AGG | 0.433703 | 2_4:+61115091 | None:intergenic |
| AGACTTGATGACAATGGGCC+TGG | 0.438601 | 2_4:-61115109 | Msa0339840:CDS |
| CGTAATTGTGCGAGCATCGC+GGG | 0.445247 | 2_4:+61116226 | None:intergenic |
| CATCGCAACAATGTTCGGTC+TGG | 0.462516 | 2_4:+61117483 | None:intergenic |
| ATTAAAATGTGACGCTGCTA+TGG | 0.476209 | 2_4:-61117392 | Msa0339840:intron |
| GATGATGGCAATGGTGGTAA+TGG | 0.487379 | 2_4:-61115070 | Msa0339840:CDS |
| AGATTAGACTTGATGACAAT+GGG | 0.494836 | 2_4:-61115114 | Msa0339840:CDS |
| TTGCCACCTCGCGACGATGA+TGG | 0.502965 | 2_4:-61115085 | Msa0339840:CDS |
| GGTAATGGAGGAGGCGATGG+TGG | 0.504915 | 2_4:-61115055 | Msa0339840:CDS |
| GGTGGTAATGGAGGAGGCGA+TGG | 0.510128 | 2_4:-61115058 | Msa0339840:CDS |
| CAATGTCTTTAAGAATGTCT+AGG | 0.523559 | 2_4:+61114990 | None:intergenic |
| AAGATTAGACTTGATGACAA+TGG | 0.549867 | 2_4:-61115115 | Msa0339840:CDS |
| GGCAATGGTGGTAATGGAGG+AGG | 0.557103 | 2_4:-61115064 | Msa0339840:CDS |
| CGCACAATTACGGTTACTCC+TGG | 0.560145 | 2_4:-61116215 | Msa0339840:intron |
| AATCAGTGCAAGTCGAACTC+AGG | 0.597432 | 2_4:-61117521 | Msa0339840:CDS |
| CCTCGCGACGATGATGGCAA+TGG | 0.603587 | 2_4:-61115079 | Msa0339840:CDS |
| CGCGACGATGATGGCAATGG+TGG | 0.606298 | 2_4:-61115076 | Msa0339840:CDS |
| GATGGCAATGGTGGTAATGG+AGG | 0.610367 | 2_4:-61115067 | Msa0339840:CDS |
| TTGCCATCATCGTCGCGAGG+TGG | 0.640575 | 2_4:+61115082 | None:intergenic |
| CCTTTGTTAATACCACCGCC+AGG | 0.641154 | 2_4:-61117660 | Msa0339840:intron |
| CCGTAATTGTGCGAGCATCG+CGG | 0.652509 | 2_4:+61116225 | None:intergenic |
| CCTGGCGGTGGTATTAACAA+AGG | 0.658066 | 2_4:+61117660 | None:intergenic |
| ATGCCAACAATATTGTGCGT+TGG | 0.666551 | 2_4:+61117687 | None:intergenic |
| CCATTGCCATCATCGTCGCG+AGG | 0.726947 | 2_4:+61115079 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGAATATTTCATAATTA+AGG | - | chr2_4:61116733-61116752 | Msa0339840:intron | 10.0% |
| !! | TAGTTTATATAAATCATTCA+TGG | - | chr2_4:61115054-61115073 | Msa0339840:CDS | 15.0% |
| !! | ATACCATATAACATAAAAAA+AGG | - | chr2_4:61115182-61115201 | Msa0339840:intron | 15.0% |
| !! | TACCATATAACATAAAAAAA+GGG | - | chr2_4:61115183-61115202 | Msa0339840:intron | 15.0% |
| !!! | ATCAATTAACAGTTTTATTT+TGG | + | chr2_4:61115451-61115470 | None:intergenic | 15.0% |
| !! | TATATCATAATCCAATATAA+CGG | - | chr2_4:61115599-61115618 | Msa0339840:intron | 15.0% |
| !! | AAAAAAACTAATAAGATTGT+AGG | + | chr2_4:61117088-61117107 | None:intergenic | 15.0% |
| !! | CAGAATAAAAAATCAATTAA+GGG | + | chr2_4:61117424-61117443 | None:intergenic | 15.0% |
| !! | ACAGAATAAAAAATCAATTA+AGG | + | chr2_4:61117425-61117444 | None:intergenic | 15.0% |
| !!! | TATGGTATGGTTTTTTATTT+TGG | - | chr2_4:61115262-61115281 | Msa0339840:intron | 20.0% |
| !!! | TGAATAATTTTTATCTTGCA+AGG | - | chr2_4:61115470-61115489 | Msa0339840:intron | 20.0% |
| !!! | GAATAATTTTTATCTTGCAA+GGG | - | chr2_4:61115471-61115490 | Msa0339840:intron | 20.0% |
| !!! | AATAATTTTTATCTTGCAAG+GGG | - | chr2_4:61115472-61115491 | Msa0339840:intron | 20.0% |
| !! | TTAAAGGAAAATAACAAGAA+TGG | + | chr2_4:61115910-61115929 | None:intergenic | 20.0% |
| !!! | ATTTTTTATAGGATGGAATA+TGG | - | chr2_4:61116166-61116185 | Msa0339840:intron | 20.0% |
| !!! | CTTTTATTCTTACTTTCAAT+CGG | - | chr2_4:61116207-61116226 | Msa0339840:intron | 20.0% |
| !!! | ATGGAAATTTTGGATTTTAT+TGG | - | chr2_4:61116234-61116253 | Msa0339840:CDS | 20.0% |
| !! | CAACAACAGTAAATTTATAA+AGG | - | chr2_4:61116977-61116996 | Msa0339840:intron | 20.0% |
| !!! | TAAAGGATTTTGATATTAGA+AGG | - | chr2_4:61116994-61117013 | Msa0339840:intron | 20.0% |
| !!! | AATTGCTAATTTTGTAGAAA+AGG | + | chr2_4:61117378-61117397 | None:intergenic | 20.0% |
| !! | TATATTTGTATACATAGACA+AGG | + | chr2_4:61117468-61117487 | None:intergenic | 20.0% |
| !!! | TGCCCTTTTTTTATGTTATA+TGG | + | chr2_4:61115188-61115207 | None:intergenic | 25.0% |
| ! | ATGCTATATGATATTCTTGT+TGG | - | chr2_4:61115358-61115377 | Msa0339840:intron | 25.0% |
| !! | TCTATTTTCCTATTCTATCT+GGG | + | chr2_4:61115721-61115740 | None:intergenic | 25.0% |
| !! | ATCTATTTTCCTATTCTATC+TGG | + | chr2_4:61115722-61115741 | None:intergenic | 25.0% |
| !!! | TTTCTGTAGGCATTTTTTAT+AGG | - | chr2_4:61116155-61116174 | Msa0339840:intron | 25.0% |
| ! | ACTTATCCAAAATTGTTTGT+TGG | - | chr2_4:61116279-61116298 | Msa0339840:intron | 25.0% |
| !!! | TCCAACATCATATCATTTTT+TGG | + | chr2_4:61116474-61116493 | None:intergenic | 25.0% |
| !!! | TTGTATTGTTTGTTTTACAC+TGG | - | chr2_4:61116521-61116540 | Msa0339840:intron | 25.0% |
| !!! | TGTATTGTTTGTTTTACACT+GGG | - | chr2_4:61116522-61116541 | Msa0339840:intron | 25.0% |
| ! | ATGATGACTAGTATAGAAAA+TGG | + | chr2_4:61116591-61116610 | None:intergenic | 25.0% |
| !! | CATTTGAAGTGCATAAATAA+TGG | - | chr2_4:61116794-61116813 | Msa0339840:intron | 25.0% |
| !!! | AACAGGGGATTTTTATTTTT+TGG | - | chr2_4:61117058-61117077 | Msa0339840:intron | 25.0% |
| ! | ATAGCATTTGTCATAATATG+TGG | - | chr2_4:61117311-61117330 | Msa0339840:intron | 25.0% |
| TCAACTAAAAATCTTGTACC+TGG | + | chr2_4:61114997-61115016 | None:intergenic | 30.0% | |
| !!! | TGAGATAGTTTTAGCAACTT+AGG | - | chr2_4:61115014-61115033 | Msa0339840:CDS | 30.0% |
| TGTTTGCTTTCTTTATGCTA+TGG | - | chr2_4:61115296-61115315 | Msa0339840:intron | 30.0% | |
| ! | ATCAGTCCTTTTTGATAAGT+TGG | - | chr2_4:61115418-61115437 | Msa0339840:intron | 30.0% |
| !!! | TCCTTTTTGATAAGTTGGTA+AGG | - | chr2_4:61115423-61115442 | Msa0339840:intron | 30.0% |
| ACCTTACCAACTTATCAAAA+AGG | + | chr2_4:61115427-61115446 | None:intergenic | 30.0% | |
| ATCAGGTTTCTTCTATAGTA+AGG | + | chr2_4:61115692-61115711 | None:intergenic | 30.0% | |
| CTATCAGAAACATATCTGAA+TGG | + | chr2_4:61115805-61115824 | None:intergenic | 30.0% | |
| ! | CATTCAGATATGTTTCTGAT+AGG | - | chr2_4:61115803-61115822 | Msa0339840:intron | 30.0% |
| TAGGATTCAACAGAAGTTAA+AGG | + | chr2_4:61115926-61115945 | None:intergenic | 30.0% | |
| AAGTTTCATATGTATGAGAG+TGG | + | chr2_4:61116069-61116088 | None:intergenic | 30.0% | |
| !!! | TGTTCCATTGATTTTTCTGT+AGG | - | chr2_4:61116142-61116161 | Msa0339840:intron | 30.0% |
| AATGCCTACAGAAAAATCAA+TGG | + | chr2_4:61116149-61116168 | None:intergenic | 30.0% | |
| !!! | TGTAGGCATTTTTTATAGGA+TGG | - | chr2_4:61116159-61116178 | Msa0339840:intron | 30.0% |
| ! | AATCGGAATCATGGAAATTT+TGG | - | chr2_4:61116224-61116243 | Msa0339840:CDS | 30.0% |
| ATGTAACATTCTGTAGAAAG+GGG | + | chr2_4:61116360-61116379 | None:intergenic | 30.0% | |
| CATGTAACATTCTGTAGAAA+GGG | + | chr2_4:61116361-61116380 | None:intergenic | 30.0% | |
| ACATGTAACATTCTGTAGAA+AGG | + | chr2_4:61116362-61116381 | None:intergenic | 30.0% | |
| GCCAAAAAATGATATGATGT+TGG | - | chr2_4:61116470-61116489 | Msa0339840:intron | 30.0% | |
| ACTAGTATAGAAAATGGAAG+AGG | + | chr2_4:61116585-61116604 | None:intergenic | 30.0% | |
| TCAATAAAGACACTGATGTA+TGG | + | chr2_4:61116666-61116685 | None:intergenic | 30.0% | |
| CTAAATCAATATCAAAGCGT+AGG | - | chr2_4:61116691-61116710 | Msa0339840:intron | 30.0% | |
| TGCATAAATAATGGCTTTCT+TGG | - | chr2_4:61116803-61116822 | Msa0339840:intron | 30.0% | |
| AAATCTGTCTACTTAACTGA+AGG | - | chr2_4:61117034-61117053 | Msa0339840:intron | 30.0% | |
| AATCTGTCTACTTAACTGAA+GGG | - | chr2_4:61117035-61117054 | Msa0339840:intron | 30.0% | |
| ACAAAACACTATCTACAGAA+GGG | + | chr2_4:61117137-61117156 | None:intergenic | 30.0% | |
| TACAAAACACTATCTACAGA+AGG | + | chr2_4:61117138-61117157 | None:intergenic | 30.0% | |
| ! | GTTTGTTTGATGGTTTCTTA+TGG | - | chr2_4:61117214-61117233 | Msa0339840:intron | 30.0% |
| CATTTGTCATAATATGTGGA+CGG | - | chr2_4:61117315-61117334 | Msa0339840:intron | 30.0% | |
| ! | AAATGAATAGAGTTGAGTTG+TGG | + | chr2_4:61117354-61117373 | None:intergenic | 30.0% |
| !! | ATCTTTTTGTCTGTCATTTC+AGG | + | chr2_4:61117506-61117525 | None:intergenic | 30.0% |
| ! | AAGATTAGACTTGATGACAA+TGG | - | chr2_4:61117521-61117540 | Msa0339840:CDS | 30.0% |
| ! | AGATTAGACTTGATGACAAT+GGG | - | chr2_4:61117522-61117541 | Msa0339840:CDS | 30.0% |
| ! | CAATGTCTTTAAGAATGTCT+AGG | + | chr2_4:61117649-61117668 | None:intergenic | 30.0% |
| ACTAAAAATCTTGTACCTGG+CGG | + | chr2_4:61114994-61115013 | None:intergenic | 35.0% | |
| ATTAAAATGTGACGCTGCTA+TGG | - | chr2_4:61115244-61115263 | Msa0339840:intron | 35.0% | |
| GCTTTCTTTATGCTATGGTA+TGG | - | chr2_4:61115301-61115320 | Msa0339840:intron | 35.0% | |
| !! | TTACCGGTGTTGTCAAATAT+CGG | - | chr2_4:61115506-61115525 | Msa0339840:intron | 35.0% |
| GATATAAAATCCCGCCATAT+TGG | + | chr2_4:61115585-61115604 | None:intergenic | 35.0% | |
| ATCGAAAACCCAGATAGAAT+AGG | - | chr2_4:61115710-61115729 | Msa0339840:intron | 35.0% | |
| AAACATATCTGAATGGTCAC+TGG | + | chr2_4:61115798-61115817 | None:intergenic | 35.0% | |
| ! | CTTTTGCACAAAAGGTCAAA+AGG | + | chr2_4:61115832-61115851 | None:intergenic | 35.0% |
| ! | CTTTTGACCTTTTGTGCAAA+AGG | - | chr2_4:61115830-61115849 | Msa0339840:intron | 35.0% |
| ! | ACATAGACCTTTTGCACAAA+AGG | + | chr2_4:61115840-61115859 | None:intergenic | 35.0% |
| TTGTGCAAAAGGTCTATGTT+AGG | - | chr2_4:61115841-61115860 | Msa0339840:intron | 35.0% | |
| GATCAAGATAGGAAAGTGAT+AGG | + | chr2_4:61115945-61115964 | None:intergenic | 35.0% | |
| GCAATGAAGAAATTGGAACT+AGG | + | chr2_4:61116038-61116057 | None:intergenic | 35.0% | |
| ACAAGAGGCAATGAAGAAAT+TGG | + | chr2_4:61116045-61116064 | None:intergenic | 35.0% | |
| CTTACTTTCAATCGGAATCA+TGG | - | chr2_4:61116215-61116234 | Msa0339840:intron | 35.0% | |
| ! | CGTAGACCAACAAACAATTT+TGG | + | chr2_4:61116288-61116307 | None:intergenic | 35.0% |
| CGATATTCTGATGTCTTGTA+TGG | - | chr2_4:61116306-61116325 | Msa0339840:intron | 35.0% | |
| TCTTGTATGGTGCTCATATT+CGG | - | chr2_4:61116319-61116338 | Msa0339840:intron | 35.0% | |
| TCATATTCGGATGTCTTGTA+TGG | - | chr2_4:61116332-61116351 | Msa0339840:intron | 35.0% | |
| !! | TTTGAGTTGGACTTATTACC+AGG | + | chr2_4:61116442-61116461 | None:intergenic | 35.0% |
| !!! | TTGGCAGAAGTTTTTTGAGT+TGG | + | chr2_4:61116455-61116474 | None:intergenic | 35.0% |
| ACTAGGATGCATGATTGTAA+AGG | + | chr2_4:61116836-61116855 | None:intergenic | 35.0% | |
| CAATGCAAAGAAGCTAGAAA+AGG | - | chr2_4:61116939-61116958 | Msa0339840:intron | 35.0% | |
| TTGTAGTCTGTTTCCTAGAA+TGG | - | chr2_4:61117153-61117172 | Msa0339840:intron | 35.0% | |
| AACTGAAACGAAACCATTCT+AGG | + | chr2_4:61117169-61117188 | None:intergenic | 35.0% | |
| AACCATCAAACAAACACACT+TGG | + | chr2_4:61117209-61117228 | None:intergenic | 35.0% | |
| ! | TGTTTGATGGTTTCTTATGG+AGG | - | chr2_4:61117217-61117236 | Msa0339840:intron | 35.0% |
| ACACCAACGCACAATATTGT+TGG | - | chr2_4:61114946-61114965 | Msa0339840:CDS | 40.0% | |
| ATGCCAACAATATTGTGCGT+TGG | + | chr2_4:61114952-61114971 | None:intergenic | 40.0% | |
| GATATTTGACAACACCGGTA+AGG | + | chr2_4:61115507-61115526 | None:intergenic | 40.0% | |
| ATATTGGCCGAAATTTGGCA+TGG | + | chr2_4:61115569-61115588 | None:intergenic | 40.0% | |
| ATGCCAAATTTCGGCCAATA+TGG | - | chr2_4:61115568-61115587 | Msa0339840:intron | 40.0% | |
| ! | TTCTATCTGGGTTTTCGATC+AGG | + | chr2_4:61115709-61115728 | None:intergenic | 40.0% |
| ! | TGCTTGTTGCAGTCTCTATT+AGG | + | chr2_4:61115757-61115776 | None:intergenic | 40.0% |
| TAATAGAGACTGCAACAAGC+AGG | - | chr2_4:61115756-61115775 | Msa0339840:intron | 40.0% | |
| TGCAAAAGGTCTATGTTAGG+AGG | - | chr2_4:61115844-61115863 | Msa0339840:intron | 40.0% | |
| GCAAAAGGTCTATGTTAGGA+GGG | - | chr2_4:61115845-61115864 | Msa0339840:intron | 40.0% | |
| CAAAAGGTCTATGTTAGGAG+GGG | - | chr2_4:61115846-61115865 | Msa0339840:intron | 40.0% | |
| AAACAGTTAGCAGCATGTGA+CGG | + | chr2_4:61115973-61115992 | None:intergenic | 40.0% | |
| GAACTAGGAAGAGACTAAAG+TGG | + | chr2_4:61116023-61116042 | None:intergenic | 40.0% | |
| ATGTATGAGAGTGGTACAAG+AGG | + | chr2_4:61116060-61116079 | None:intergenic | 40.0% | |
| ! | TGTTTTACACTGGGACAAAC+TGG | - | chr2_4:61116531-61116550 | Msa0339840:intron | 40.0% |
| CAATCATGCATCCTAGTGAT+TGG | - | chr2_4:61116839-61116858 | Msa0339840:intron | 40.0% | |
| TGTAGGTCATACCAATCACT+AGG | + | chr2_4:61116853-61116872 | None:intergenic | 40.0% | |
| AACTATGTCCCATTGAGTCA+TGG | + | chr2_4:61116880-61116899 | None:intergenic | 40.0% | |
| ATGACTCAATGGGACATAGT+TGG | - | chr2_4:61116879-61116898 | Msa0339840:intron | 40.0% | |
| ! | CAATGGGACATAGTTGGTTT+AGG | - | chr2_4:61116885-61116904 | Msa0339840:intron | 40.0% |
| ! | ATAGTTGGTTTAGGCGATAG+AGG | - | chr2_4:61116894-61116913 | Msa0339840:intron | 40.0% |
| !! | TTCTAGCTTCTTTGCATTGC+AGG | + | chr2_4:61116938-61116957 | None:intergenic | 40.0% |
| TCTACTTAACTGAAGGGAAC+AGG | - | chr2_4:61117041-61117060 | Msa0339840:intron | 40.0% | |
| CTACTTAACTGAAGGGAACA+GGG | - | chr2_4:61117042-61117061 | Msa0339840:intron | 40.0% | |
| TACTTAACTGAAGGGAACAG+GGG | - | chr2_4:61117043-61117062 | Msa0339840:intron | 40.0% | |
| GTCCAAGTGTGTTTGTTTGA+TGG | - | chr2_4:61117204-61117223 | Msa0339840:intron | 40.0% | |
| !! | GGAGGTTTCTTTTGAAGAAC+TGG | - | chr2_4:61117235-61117254 | Msa0339840:intron | 40.0% |
| !!! | GATGGTGGTAATTTTTCAGG+TGG | - | chr2_4:61117596-61117615 | Msa0339840:intron | 40.0% |
| !! | CTAGTGCTTTTGGGTATTCT+TGG | - | chr2_4:61117620-61117639 | Msa0339840:intron | 40.0% |
| AAAAATCTTGTACCTGGCGG+TGG | + | chr2_4:61114991-61115010 | None:intergenic | 45.0% | |
| AATCAGTGCAAGTCGAACTC+AGG | - | chr2_4:61115115-61115134 | Msa0339840:CDS | 45.0% | |
| CGTCTCATCGCAACAATGTT+CGG | + | chr2_4:61115161-61115180 | None:intergenic | 45.0% | |
| !! | GCAGCGTCACATTTTAATCG+AGG | + | chr2_4:61115242-61115261 | None:intergenic | 45.0% |
| AATGTGACGCTGCTATGGTA+TGG | - | chr2_4:61115249-61115268 | Msa0339840:intron | 45.0% | |
| AGGGGAGCTTAATTCCTTAC+CGG | - | chr2_4:61115490-61115509 | Msa0339840:intron | 45.0% | |
| TGGCCGATATTTGACAACAC+CGG | + | chr2_4:61115512-61115531 | None:intergenic | 45.0% | |
| GTGTTGTCAAATATCGGCCA+TGG | - | chr2_4:61115512-61115531 | Msa0339840:intron | 45.0% | |
| TTGTCAAATATCGGCCATGG+TGG | - | chr2_4:61115515-61115534 | Msa0339840:intron | 45.0% | |
| !! | ATATCGGCCATGGTGGATAT+TGG | - | chr2_4:61115522-61115541 | Msa0339840:intron | 45.0% |
| !!! | TGGATATTGGTGGTGGCTTT+TGG | - | chr2_4:61115535-61115554 | Msa0339840:intron | 45.0% |
| !!! | GGATATTGGTGGTGGCTTTT+GGG | - | chr2_4:61115536-61115555 | Msa0339840:intron | 45.0% |
| CCAAATTTCGGCCAATATGG+CGG | - | chr2_4:61115571-61115590 | Msa0339840:intron | 45.0% | |
| CAAATTTCGGCCAATATGGC+GGG | - | chr2_4:61115572-61115591 | Msa0339840:intron | 45.0% | |
| ACTTTGTGGCGCCGTTATAT+TGG | + | chr2_4:61115613-61115632 | None:intergenic | 45.0% | |
| AATATAACGGCGCCACAAAG+TGG | - | chr2_4:61115612-61115631 | Msa0339840:intron | 45.0% | |
| ! | ATCTGAATGGTCACTGGTCT+TGG | + | chr2_4:61115792-61115811 | None:intergenic | 45.0% |
| ! | TGACGGGTAAGGATCAAGAT+AGG | + | chr2_4:61115956-61115975 | None:intergenic | 45.0% |
| AACAGTTAGCAGCATGTGAC+GGG | + | chr2_4:61115972-61115991 | None:intergenic | 45.0% | |
| CTAGGAAGAGACTAAAGTGG+AGG | + | chr2_4:61116020-61116039 | None:intergenic | 45.0% | |
| ! | AGCATCGCGGGTTATAGTTT+GGG | + | chr2_4:61116401-61116420 | None:intergenic | 45.0% |
| TTTAGCACCTCCCAATGTGT+TGG | - | chr2_4:61116559-61116578 | Msa0339840:intron | 45.0% | |
| ATGGAAGAGGCCAACACATT+GGG | + | chr2_4:61116572-61116591 | None:intergenic | 45.0% | |
| AATGGAAGAGGCCAACACAT+TGG | + | chr2_4:61116573-61116592 | None:intergenic | 45.0% | |
| TACAGCCTCCATGACTCAAT+GGG | - | chr2_4:61116869-61116888 | Msa0339840:intron | 45.0% | |
| TATGTCCCATTGAGTCATGG+AGG | + | chr2_4:61116877-61116896 | None:intergenic | 45.0% | |
| ! | GATGATGGCAATGGTGGTAA+TGG | - | chr2_4:61117566-61117585 | Msa0339840:CDS | 45.0% |
| !! | GGCGATGGTGGTAATTTTTC+AGG | - | chr2_4:61117593-61117612 | Msa0339840:intron | 45.0% |
| !!! | TTCAGGTGGACTAGTGCTTT+TGG | - | chr2_4:61117610-61117629 | Msa0339840:intron | 45.0% |
| !!! | TCAGGTGGACTAGTGCTTTT+GGG | - | chr2_4:61117611-61117630 | Msa0339840:intron | 45.0% |
| !!! | ATATTTTTATTTTTTTTTGT+TGG | - | chr2_4:61115077-61115096 | Msa0339840:CDS | 5.0% |
| CCTGGCGGTGGTATTAACAA+AGG | + | chr2_4:61114979-61114998 | None:intergenic | 50.0% | |
| CCTTTGTTAATACCACCGCC+AGG | - | chr2_4:61114976-61114995 | Msa0339840:CDS | 50.0% | |
| CATCGCAACAATGTTCGGTC+TGG | + | chr2_4:61115156-61115175 | None:intergenic | 50.0% | |
| CTCACCGCCATGCCAAATTT+CGG | - | chr2_4:61115559-61115578 | Msa0339840:intron | 50.0% | |
| TTGGCCGAAATTTGGCATGG+CGG | + | chr2_4:61115566-61115585 | None:intergenic | 50.0% | |
| CCGCCATATTGGCCGAAATT+TGG | + | chr2_4:61115574-61115593 | None:intergenic | 50.0% | |
| GAGCCAAAATCCTGCCAAAC+CGG | + | chr2_4:61115638-61115657 | None:intergenic | 50.0% | |
| GTAAGGAGCAGTGTTGCCAA+TGG | + | chr2_4:61115675-61115694 | None:intergenic | 50.0% | |
| !! | TTAGCAGCATGTGACGGGTA+AGG | + | chr2_4:61115967-61115986 | None:intergenic | 50.0% |
| ! | GAGCATCGCGGGTTATAGTT+TGG | + | chr2_4:61116402-61116421 | None:intergenic | 50.0% |
| CGCACAATTACGGTTACTCC+TGG | - | chr2_4:61116421-61116440 | Msa0339840:intron | 50.0% | |
| CATTGAGTCATGGAGGCTGT+AGG | + | chr2_4:61116870-61116889 | None:intergenic | 50.0% | |
| CTACAGCCTCCATGACTCAA+TGG | - | chr2_4:61116868-61116887 | Msa0339840:intron | 50.0% | |
| ! | GTTGGTTTAGGCGATAGAGG+TGG | - | chr2_4:61116897-61116916 | Msa0339840:intron | 50.0% |
| ! | AGACTTGATGACAATGGGCC+TGG | - | chr2_4:61117527-61117546 | Msa0339840:CDS | 50.0% |
| !! | GATGGCAATGGTGGTAATGG+AGG | - | chr2_4:61117569-61117588 | Msa0339840:CDS | 50.0% |
| !! | TCGGCCATGGTGGATATTGG+TGG | - | chr2_4:61115525-61115544 | Msa0339840:intron | 55.0% |
| !! | GCCATGGTGGATATTGGTGG+TGG | - | chr2_4:61115528-61115547 | Msa0339840:intron | 55.0% |
| GCCACCACCAATATCCACCA+TGG | + | chr2_4:61115532-61115551 | None:intergenic | 55.0% | |
| !!! | TGGCCGGTTTGGCAGGATTT+TGG | - | chr2_4:61115632-61115651 | Msa0339840:intron | 55.0% |
| !!! | AGGATTTTGGCTCTCCGCCA+TGG | - | chr2_4:61115645-61115664 | Msa0339840:intron | 55.0% |
| AGGAGCAGTGTTGCCAATGG+CGG | + | chr2_4:61115672-61115691 | None:intergenic | 55.0% | |
| ! | CGTAATTGTGCGAGCATCGC+GGG | + | chr2_4:61116413-61116432 | None:intergenic | 55.0% |
| ! | CCGTAATTGTGCGAGCATCG+CGG | + | chr2_4:61116414-61116433 | None:intergenic | 55.0% |
| CCGCGATGCTCGCACAATTA+CGG | - | chr2_4:61116411-61116430 | Msa0339840:intron | 55.0% | |
| GAAGAGGCCAACACATTGGG+AGG | + | chr2_4:61116569-61116588 | None:intergenic | 55.0% | |
| !! | GGCAATGGTGGTAATGGAGG+AGG | - | chr2_4:61117572-61117591 | Msa0339840:CDS | 55.0% |
| TAACGGCGCCACAAAGTGGC+CGG | - | chr2_4:61115616-61115635 | Msa0339840:intron | 60.0% | |
| ! | CTGCCAAACCGGCCACTTTG+TGG | + | chr2_4:61115627-61115646 | None:intergenic | 60.0% |
| !! | CACAAAGTGGCCGGTTTGGC+AGG | - | chr2_4:61115625-61115644 | Msa0339840:intron | 60.0% |
| TTGCCAATGGCGGTCCATGG+CGG | + | chr2_4:61115662-61115681 | None:intergenic | 60.0% | |
| GTGTTGCCAATGGCGGTCCA+TGG | + | chr2_4:61115665-61115684 | None:intergenic | 60.0% | |
| TTGCCACCTCGCGACGATGA+TGG | - | chr2_4:61117551-61117570 | Msa0339840:CDS | 60.0% | |
| TTGCCATCATCGTCGCGAGG+TGG | + | chr2_4:61117557-61117576 | None:intergenic | 60.0% | |
| CCATTGCCATCATCGTCGCG+AGG | + | chr2_4:61117560-61117579 | None:intergenic | 60.0% | |
| ! | CCTCGCGACGATGATGGCAA+TGG | - | chr2_4:61117557-61117576 | Msa0339840:CDS | 60.0% |
| ! | CGCGACGATGATGGCAATGG+TGG | - | chr2_4:61117560-61117579 | Msa0339840:CDS | 60.0% |
| !! | GGTGGTAATGGAGGAGGCGA+TGG | - | chr2_4:61117578-61117597 | Msa0339840:CDS | 60.0% |
| !! | GGTAATGGAGGAGGCGATGG+TGG | - | chr2_4:61117581-61117600 | Msa0339840:CDS | 60.0% |
| GCGCCACAAAGTGGCCGGTT+TGG | - | chr2_4:61115621-61115640 | Msa0339840:intron | 65.0% | |
| TCTCCGCCATGGACCGCCAT+TGG | - | chr2_4:61115656-61115675 | Msa0339840:intron | 65.0% | |
| TCGTCGCGAGGTGGCAATCC+AGG | + | chr2_4:61117548-61117567 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 61114940 | 61117718 | 61114940 | ID=Msa0339840;Name=Msa0339840 |
| chr2_4 | mRNA | 61114940 | 61117718 | 61114940 | ID=Msa0339840-mRNA-1;Parent=Msa0339840;Name=Msa0339840-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|0.66|0.5|4|0|180 |
| chr2_4 | exon | 61117661 | 61117718 | 61117661 | ID=Msa0339840-mRNA-1:exon:19151;Parent=Msa0339840-mRNA-1 |
| chr2_4 | exon | 61117393 | 61117601 | 61117393 | ID=Msa0339840-mRNA-1:exon:19150;Parent=Msa0339840-mRNA-1 |
| chr2_4 | exon | 61116216 | 61116288 | 61116216 | ID=Msa0339840-mRNA-1:exon:19149;Parent=Msa0339840-mRNA-1 |
| chr2_4 | exon | 61114940 | 61115142 | 61114940 | ID=Msa0339840-mRNA-1:exon:19148;Parent=Msa0339840-mRNA-1 |
| chr2_4 | CDS | 61117661 | 61117718 | 61117661 | ID=Msa0339840-mRNA-1:cds;Parent=Msa0339840-mRNA-1 |
| chr2_4 | CDS | 61117393 | 61117601 | 61117393 | ID=Msa0339840-mRNA-1:cds;Parent=Msa0339840-mRNA-1 |
| chr2_4 | CDS | 61116216 | 61116288 | 61116216 | ID=Msa0339840-mRNA-1:cds;Parent=Msa0339840-mRNA-1 |
| chr2_4 | CDS | 61114940 | 61115142 | 61114940 | ID=Msa0339840-mRNA-1:cds;Parent=Msa0339840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
