Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260720 | XP_013463097.2 | 96.667 | 120 | 4 | 0 | 1 | 120 | 207 | 326 | 1.87e-73 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260720 | sp|Q8RWB8|UPL6_ARATH | 46.774 | 124 | 61 | 3 | 1 | 120 | 167 | 289 | 2.58e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260720 | A0A396J8U6 | 96.667 | 120 | 4 | 0 | 1 | 120 | 207 | 326 | 8.94e-74 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0260720 | Msa0340740 | 0.809603 | 1.744157e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260720 | MtrunA17_Chr2g0293881 | 96.667 | 120 | 4 | 0 | 1 | 120 | 207 | 326 | 1.72e-77 | 244 |
| Msa0260720 | MtrunA17_Chr2g0293841 | 90.000 | 120 | 11 | 1 | 1 | 120 | 167 | 285 | 3.01e-68 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260720 | AT3G17205.2 | 46.774 | 124 | 61 | 3 | 1 | 120 | 167 | 289 | 2.04e-30 | 114 |
| Msa0260720 | AT3G17205.1 | 46.774 | 124 | 61 | 3 | 1 | 120 | 167 | 289 | 2.63e-30 | 114 |
| Msa0260720 | AT3G17205.3 | 46.774 | 124 | 61 | 3 | 1 | 120 | 167 | 289 | 2.63e-30 | 114 |
Find 18 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTACAATTCCATTCTTA+TGG | 0.230114 | 2_2:+58517988 | Msa0260720:CDS |
| GCTTTGGAACGTGTGCTTAC+AGG | 0.301950 | 2_2:+58517891 | Msa0260720:CDS |
| CTTAGACAGATCATTCTTAC+AGG | 0.310293 | 2_2:+58516848 | Msa0260720:CDS |
| AGTACTATAATTTCCAATAA+AGG | 0.377935 | 2_2:-58516752 | None:intergenic |
| AATAAATACCTGTCTTAAGT+TGG | 0.405916 | 2_2:-58518021 | None:intergenic |
| AAAATGTATAGGATCGGCTT+TGG | 0.443775 | 2_2:+58517875 | Msa0260720:CDS |
| ATAAATACCTGTCTTAAGTT+GGG | 0.444021 | 2_2:-58518020 | None:intergenic |
| CCATGGAGCTGTAAGATAGT+AGG | 0.482104 | 2_2:+58516794 | Msa0260720:CDS |
| GCCATAAGAATGGAATTGTA+AGG | 0.486453 | 2_2:-58517989 | None:intergenic |
| ACTCACCAGAAATCAGTTGA+AGG | 0.492753 | 2_2:+58516682 | None:intergenic |
| GCTGATGCATTAGACTCCTT+CGG | 0.508094 | 2_2:-58516725 | None:intergenic |
| TGCGATGAGTAGCTAACACT+TGG | 0.557053 | 2_2:-58517963 | None:intergenic |
| GGATATTTCTCTCAAAACAA+TGG | 0.568363 | 2_2:+58516815 | Msa0260720:CDS |
| ACAGATCATTCTTACAGGAA+AGG | 0.571730 | 2_2:+58516853 | Msa0260720:CDS |
| CCTACTATCTTACAGCTCCA+TGG | 0.575826 | 2_2:-58516794 | None:intergenic |
| TGATAGATCTCAAACTGCCA+TGG | 0.588288 | 2_2:+58516777 | Msa0260720:CDS |
| TCAATGTCTGAACAAATACA+TGG | 0.629145 | 2_2:-58517939 | None:intergenic |
| ACAGGTGTAATGTGTCACAT+TGG | 0.648085 | 2_2:+58517909 | Msa0260720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTTATATACATGA+AGG | - | chr2_2:58517504-58517523 | None:intergenic | 10.0% |
| !! | TAATTAATTTATATACATGA+AGG | - | chr2_2:58517504-58517523 | None:intergenic | 10.0% |
| !! | AGTACTATAATTTCCAATAA+AGG | - | chr2_2:58516755-58516774 | None:intergenic | 20.0% |
| !! | TATTTATGAAGATATGAATG+AGG | + | chr2_2:58516969-58516988 | Msa0260720:intron | 20.0% |
| !! | ATAAATTAATTAGATTCAGC+TGG | + | chr2_2:58517512-58517531 | Msa0260720:intron | 20.0% |
| !! | TAAATTAATTAGATTCAGCT+GGG | + | chr2_2:58517513-58517532 | Msa0260720:intron | 20.0% |
| !! | GCATATAGTTCAAAATTATA+GGG | - | chr2_2:58517686-58517705 | None:intergenic | 20.0% |
| !! | TGCATATAGTTCAAAATTAT+AGG | - | chr2_2:58517687-58517706 | None:intergenic | 20.0% |
| !! | AGTACTATAATTTCCAATAA+AGG | - | chr2_2:58516755-58516774 | None:intergenic | 20.0% |
| !! | TATTTATGAAGATATGAATG+AGG | + | chr2_2:58516969-58516988 | Msa0260720:intron | 20.0% |
| !! | ATAAATTAATTAGATTCAGC+TGG | + | chr2_2:58517512-58517531 | Msa0260720:intron | 20.0% |
| !! | TAAATTAATTAGATTCAGCT+GGG | + | chr2_2:58517513-58517532 | Msa0260720:intron | 20.0% |
| !! | GCATATAGTTCAAAATTATA+GGG | - | chr2_2:58517686-58517705 | None:intergenic | 20.0% |
| !! | TGCATATAGTTCAAAATTAT+AGG | - | chr2_2:58517687-58517706 | None:intergenic | 20.0% |
| !!! | AGGTAACAAAGTACTTTTTT+CGG | + | chr2_2:58516873-58516892 | Msa0260720:intron | 25.0% |
| ! | TCAATATAATCAACATGACA+GGG | - | chr2_2:58516932-58516951 | None:intergenic | 25.0% |
| ! | ATCAATATAATCAACATGAC+AGG | - | chr2_2:58516933-58516952 | None:intergenic | 25.0% |
| !! | TTGAATGAAGAAAAGCATAT+AGG | + | chr2_2:58517007-58517026 | Msa0260720:intron | 25.0% |
| !! | TGAATGAAGAAAAGCATATA+GGG | + | chr2_2:58517008-58517027 | Msa0260720:intron | 25.0% |
| !!! | AATAATAAGAAGGGTACTAT+AGG | + | chr2_2:58517094-58517113 | Msa0260720:intron | 25.0% |
| ! | TTATAAACTCTCCATATCTT+TGG | - | chr2_2:58517124-58517143 | None:intergenic | 25.0% |
| ! | GATGGTAATTAAGGAAAATA+GGG | - | chr2_2:58517474-58517493 | None:intergenic | 25.0% |
| ! | AGATGGTAATTAAGGAAAAT+AGG | - | chr2_2:58517475-58517494 | None:intergenic | 25.0% |
| !! | TCGATAAACTTTTACAGAAA+AGG | - | chr2_2:58517720-58517739 | None:intergenic | 25.0% |
| ! | TGTTTGTATATTTAATCCAC+AGG | - | chr2_2:58517759-58517778 | None:intergenic | 25.0% |
| ! | TCCTTTCATCATAAGATAAT+CGG | + | chr2_2:58517789-58517808 | Msa0260720:intron | 25.0% |
| ! | TAGTTTATGCATATAAGTGA+TGG | - | chr2_2:58517825-58517844 | None:intergenic | 25.0% |
| ! | GATAATGCAGAAAAATGTAT+AGG | + | chr2_2:58517864-58517883 | Msa0260720:CDS | 25.0% |
| !!! | AGGTAACAAAGTACTTTTTT+CGG | + | chr2_2:58516873-58516892 | Msa0260720:intron | 25.0% |
| ! | TCAATATAATCAACATGACA+GGG | - | chr2_2:58516932-58516951 | None:intergenic | 25.0% |
| ! | ATCAATATAATCAACATGAC+AGG | - | chr2_2:58516933-58516952 | None:intergenic | 25.0% |
| !! | TTGAATGAAGAAAAGCATAT+AGG | + | chr2_2:58517007-58517026 | Msa0260720:intron | 25.0% |
| !! | TGAATGAAGAAAAGCATATA+GGG | + | chr2_2:58517008-58517027 | Msa0260720:intron | 25.0% |
| !!! | AATAATAAGAAGGGTACTAT+AGG | + | chr2_2:58517094-58517113 | Msa0260720:intron | 25.0% |
| ! | TTATAAACTCTCCATATCTT+TGG | - | chr2_2:58517124-58517143 | None:intergenic | 25.0% |
| ! | GATGGTAATTAAGGAAAATA+GGG | - | chr2_2:58517474-58517493 | None:intergenic | 25.0% |
| ! | AGATGGTAATTAAGGAAAAT+AGG | - | chr2_2:58517475-58517494 | None:intergenic | 25.0% |
| !! | TCGATAAACTTTTACAGAAA+AGG | - | chr2_2:58517720-58517739 | None:intergenic | 25.0% |
| ! | TGTTTGTATATTTAATCCAC+AGG | - | chr2_2:58517759-58517778 | None:intergenic | 25.0% |
| ! | TCCTTTCATCATAAGATAAT+CGG | + | chr2_2:58517789-58517808 | Msa0260720:intron | 25.0% |
| ! | TAGTTTATGCATATAAGTGA+TGG | - | chr2_2:58517825-58517844 | None:intergenic | 25.0% |
| ! | GATAATGCAGAAAAATGTAT+AGG | + | chr2_2:58517864-58517883 | Msa0260720:CDS | 25.0% |
| GGATATTTCTCTCAAAACAA+TGG | + | chr2_2:58516815-58516834 | Msa0260720:CDS | 30.0% | |
| ! | TGACAGGGATTAATTTTAGA+GGG | - | chr2_2:58516917-58516936 | None:intergenic | 30.0% |
| ! | ATGACAGGGATTAATTTTAG+AGG | - | chr2_2:58516918-58516937 | None:intergenic | 30.0% |
| ! | GAATGAAGAAAAGCATATAG+GGG | + | chr2_2:58517009-58517028 | Msa0260720:intron | 30.0% |
| AGAAAAGATAAGAAGACTAG+TGG | + | chr2_2:58517145-58517164 | Msa0260720:intron | 30.0% | |
| CGCTTTAGTAGTATTTAAGT+AGG | + | chr2_2:58517297-58517316 | Msa0260720:intron | 30.0% | |
| ! | TAGGAGTAATAGTCTTTTAG+AGG | + | chr2_2:58517316-58517335 | Msa0260720:intron | 30.0% |
| ! | AGGAGTAATAGTCTTTTAGA+GGG | + | chr2_2:58517317-58517336 | Msa0260720:intron | 30.0% |
| GGTTACAAAGATGGTAATTA+AGG | - | chr2_2:58517483-58517502 | None:intergenic | 30.0% | |
| ATACATGAAGGTTACAAAGA+TGG | - | chr2_2:58517492-58517511 | None:intergenic | 30.0% | |
| AAAAGACTAAGAAAGAGACT+CGG | - | chr2_2:58517594-58517613 | None:intergenic | 30.0% | |
| !! | AAGACTTTGAGTTGTGATTA+TGG | - | chr2_2:58517630-58517649 | None:intergenic | 30.0% |
| AAATTATAGGGTTATAGACG+AGG | - | chr2_2:58517674-58517693 | None:intergenic | 30.0% | |
| ATAAAGAAAACATGTTCCTG+TGG | + | chr2_2:58517740-58517759 | Msa0260720:intron | 30.0% | |
| TCCGATTATCTTATGATGAA+AGG | - | chr2_2:58517793-58517812 | None:intergenic | 30.0% | |
| TGCAGAAAAATGTATAGGAT+CGG | + | chr2_2:58517869-58517888 | Msa0260720:CDS | 30.0% | |
| TCAATGTCTGAACAAATACA+TGG | - | chr2_2:58517942-58517961 | None:intergenic | 30.0% | |
| TCCTTACAATTCCATTCTTA+TGG | + | chr2_2:58517988-58518007 | Msa0260720:CDS | 30.0% | |
| GGATATTTCTCTCAAAACAA+TGG | + | chr2_2:58516815-58516834 | Msa0260720:CDS | 30.0% | |
| ! | TGACAGGGATTAATTTTAGA+GGG | - | chr2_2:58516917-58516936 | None:intergenic | 30.0% |
| ! | ATGACAGGGATTAATTTTAG+AGG | - | chr2_2:58516918-58516937 | None:intergenic | 30.0% |
| ! | GAATGAAGAAAAGCATATAG+GGG | + | chr2_2:58517009-58517028 | Msa0260720:intron | 30.0% |
| AGAAAAGATAAGAAGACTAG+TGG | + | chr2_2:58517145-58517164 | Msa0260720:intron | 30.0% | |
| CGCTTTAGTAGTATTTAAGT+AGG | + | chr2_2:58517297-58517316 | Msa0260720:intron | 30.0% | |
| ! | TAGGAGTAATAGTCTTTTAG+AGG | + | chr2_2:58517316-58517335 | Msa0260720:intron | 30.0% |
| ! | AGGAGTAATAGTCTTTTAGA+GGG | + | chr2_2:58517317-58517336 | Msa0260720:intron | 30.0% |
| GGTTACAAAGATGGTAATTA+AGG | - | chr2_2:58517483-58517502 | None:intergenic | 30.0% | |
| ATACATGAAGGTTACAAAGA+TGG | - | chr2_2:58517492-58517511 | None:intergenic | 30.0% | |
| AAAAGACTAAGAAAGAGACT+CGG | - | chr2_2:58517594-58517613 | None:intergenic | 30.0% | |
| !! | AAGACTTTGAGTTGTGATTA+TGG | - | chr2_2:58517630-58517649 | None:intergenic | 30.0% |
| AAATTATAGGGTTATAGACG+AGG | - | chr2_2:58517674-58517693 | None:intergenic | 30.0% | |
| ATAAAGAAAACATGTTCCTG+TGG | + | chr2_2:58517740-58517759 | Msa0260720:intron | 30.0% | |
| TCCGATTATCTTATGATGAA+AGG | - | chr2_2:58517793-58517812 | None:intergenic | 30.0% | |
| TGCAGAAAAATGTATAGGAT+CGG | + | chr2_2:58517869-58517888 | Msa0260720:CDS | 30.0% | |
| TCAATGTCTGAACAAATACA+TGG | - | chr2_2:58517942-58517961 | None:intergenic | 30.0% | |
| TCCTTACAATTCCATTCTTA+TGG | + | chr2_2:58517988-58518007 | Msa0260720:CDS | 30.0% | |
| !!! | ACAACTTTTATTGACTCCGA+AGG | + | chr2_2:58516709-58516728 | Msa0260720:CDS | 35.0% |
| ! | TGCATCAGCTTTTCCTTTAT+TGG | + | chr2_2:58516739-58516758 | Msa0260720:CDS | 35.0% |
| CTTAGACAGATCATTCTTAC+AGG | + | chr2_2:58516848-58516867 | Msa0260720:CDS | 35.0% | |
| ACAGATCATTCTTACAGGAA+AGG | + | chr2_2:58516853-58516872 | Msa0260720:CDS | 35.0% | |
| TCAAGCAGCATTAGAATTCT+AGG | - | chr2_2:58517057-58517076 | None:intergenic | 35.0% | |
| ! | TAATGCTGCTTGAAACATGA+TGG | + | chr2_2:58517064-58517083 | Msa0260720:intron | 35.0% |
| ! | AATGCTGCTTGAAACATGAT+GGG | + | chr2_2:58517065-58517084 | Msa0260720:intron | 35.0% |
| TGGGAACGCTAATAATAAGA+AGG | + | chr2_2:58517084-58517103 | Msa0260720:intron | 35.0% | |
| GGGAACGCTAATAATAAGAA+GGG | + | chr2_2:58517085-58517104 | Msa0260720:intron | 35.0% | |
| CTATAGGAAGACCAAAGATA+TGG | + | chr2_2:58517110-58517129 | Msa0260720:intron | 35.0% | |
| AGGAGCCTTAGTAAACTATA+GGG | + | chr2_2:58517183-58517202 | Msa0260720:intron | 35.0% | |
| AGACACCCTATAGTTTACTA+AGG | - | chr2_2:58517191-58517210 | None:intergenic | 35.0% | |
| AGCGATAAACCAACTTCTAA+GGG | - | chr2_2:58517281-58517300 | None:intergenic | 35.0% | |
| AAGCGATAAACCAACTTCTA+AGG | - | chr2_2:58517282-58517301 | None:intergenic | 35.0% | |
| ! | ACAGATTGTGTTTCTGTTCA+GGG | + | chr2_2:58517344-58517363 | Msa0260720:intron | 35.0% |
| AAAGACTAAGAAAGAGACTC+GGG | - | chr2_2:58517593-58517612 | None:intergenic | 35.0% | |
| CTATCTGAATGATATACTGC+AGG | + | chr2_2:58517842-58517861 | Msa0260720:intron | 35.0% | |
| ! | AAAATGTATAGGATCGGCTT+TGG | + | chr2_2:58517875-58517894 | Msa0260720:CDS | 35.0% |
| GCCATAAGAATGGAATTGTA+AGG | - | chr2_2:58517992-58518011 | None:intergenic | 35.0% | |
| GGAAAAACATGCCATAAGAA+TGG | - | chr2_2:58518002-58518021 | None:intergenic | 35.0% | |
| ! | TGTTTTTCCCAACTTAAGAC+AGG | + | chr2_2:58518013-58518032 | Msa0260720:CDS | 35.0% |
| !!! | ACAACTTTTATTGACTCCGA+AGG | + | chr2_2:58516709-58516728 | Msa0260720:CDS | 35.0% |
| ! | TGCATCAGCTTTTCCTTTAT+TGG | + | chr2_2:58516739-58516758 | Msa0260720:CDS | 35.0% |
| CTTAGACAGATCATTCTTAC+AGG | + | chr2_2:58516848-58516867 | Msa0260720:CDS | 35.0% | |
| ACAGATCATTCTTACAGGAA+AGG | + | chr2_2:58516853-58516872 | Msa0260720:CDS | 35.0% | |
| TCAAGCAGCATTAGAATTCT+AGG | - | chr2_2:58517057-58517076 | None:intergenic | 35.0% | |
| ! | TAATGCTGCTTGAAACATGA+TGG | + | chr2_2:58517064-58517083 | Msa0260720:intron | 35.0% |
| ! | AATGCTGCTTGAAACATGAT+GGG | + | chr2_2:58517065-58517084 | Msa0260720:intron | 35.0% |
| TGGGAACGCTAATAATAAGA+AGG | + | chr2_2:58517084-58517103 | Msa0260720:intron | 35.0% | |
| GGGAACGCTAATAATAAGAA+GGG | + | chr2_2:58517085-58517104 | Msa0260720:intron | 35.0% | |
| CTATAGGAAGACCAAAGATA+TGG | + | chr2_2:58517110-58517129 | Msa0260720:intron | 35.0% | |
| AGGAGCCTTAGTAAACTATA+GGG | + | chr2_2:58517183-58517202 | Msa0260720:intron | 35.0% | |
| AGACACCCTATAGTTTACTA+AGG | - | chr2_2:58517191-58517210 | None:intergenic | 35.0% | |
| AGCGATAAACCAACTTCTAA+GGG | - | chr2_2:58517281-58517300 | None:intergenic | 35.0% | |
| AAGCGATAAACCAACTTCTA+AGG | - | chr2_2:58517282-58517301 | None:intergenic | 35.0% | |
| ! | ACAGATTGTGTTTCTGTTCA+GGG | + | chr2_2:58517344-58517363 | Msa0260720:intron | 35.0% |
| AAAGACTAAGAAAGAGACTC+GGG | - | chr2_2:58517593-58517612 | None:intergenic | 35.0% | |
| CTATCTGAATGATATACTGC+AGG | + | chr2_2:58517842-58517861 | Msa0260720:intron | 35.0% | |
| ! | AAAATGTATAGGATCGGCTT+TGG | + | chr2_2:58517875-58517894 | Msa0260720:CDS | 35.0% |
| GCCATAAGAATGGAATTGTA+AGG | - | chr2_2:58517992-58518011 | None:intergenic | 35.0% | |
| GGAAAAACATGCCATAAGAA+TGG | - | chr2_2:58518002-58518021 | None:intergenic | 35.0% | |
| ! | TGTTTTTCCCAACTTAAGAC+AGG | + | chr2_2:58518013-58518032 | Msa0260720:CDS | 35.0% |
| TGATAGATCTCAAACTGCCA+TGG | + | chr2_2:58516777-58516796 | Msa0260720:CDS | 40.0% | |
| GAGGAGCCTTAGTAAACTAT+AGG | + | chr2_2:58517182-58517201 | Msa0260720:intron | 40.0% | |
| ! | GACAGATTGTGTTTCTGTTC+AGG | + | chr2_2:58517343-58517362 | Msa0260720:intron | 40.0% |
| ACTCGAGCATATTCAGAAGA+TGG | + | chr2_2:58517545-58517564 | Msa0260720:intron | 40.0% | |
| GAGCATATTCAGAAGATGGT+TGG | + | chr2_2:58517549-58517568 | Msa0260720:intron | 40.0% | |
| TCAGAAGATGGTTGGATCAA+TGG | + | chr2_2:58517557-58517576 | Msa0260720:intron | 40.0% | |
| TATAGGGTTATAGACGAGGA+AGG | - | chr2_2:58517670-58517689 | None:intergenic | 40.0% | |
| ACAGGTGTAATGTGTCACAT+TGG | + | chr2_2:58517909-58517928 | Msa0260720:CDS | 40.0% | |
| TGATAGATCTCAAACTGCCA+TGG | + | chr2_2:58516777-58516796 | Msa0260720:CDS | 40.0% | |
| GAGGAGCCTTAGTAAACTAT+AGG | + | chr2_2:58517182-58517201 | Msa0260720:intron | 40.0% | |
| ! | GACAGATTGTGTTTCTGTTC+AGG | + | chr2_2:58517343-58517362 | Msa0260720:intron | 40.0% |
| ACTCGAGCATATTCAGAAGA+TGG | + | chr2_2:58517545-58517564 | Msa0260720:intron | 40.0% | |
| GAGCATATTCAGAAGATGGT+TGG | + | chr2_2:58517549-58517568 | Msa0260720:intron | 40.0% | |
| TCAGAAGATGGTTGGATCAA+TGG | + | chr2_2:58517557-58517576 | Msa0260720:intron | 40.0% | |
| TATAGGGTTATAGACGAGGA+AGG | - | chr2_2:58517670-58517689 | None:intergenic | 40.0% | |
| ACAGGTGTAATGTGTCACAT+TGG | + | chr2_2:58517909-58517928 | Msa0260720:CDS | 40.0% | |
| GCTGATGCATTAGACTCCTT+CGG | - | chr2_2:58516728-58516747 | None:intergenic | 45.0% | |
| CCTACTATCTTACAGCTCCA+TGG | - | chr2_2:58516797-58516816 | None:intergenic | 45.0% | |
| CCATGGAGCTGTAAGATAGT+AGG | + | chr2_2:58516794-58516813 | Msa0260720:CDS | 45.0% | |
| AGTGGCTGAAGTTACTAGTG+AGG | + | chr2_2:58517163-58517182 | Msa0260720:intron | 45.0% | |
| AGCGCTTATCCCTTAGAAGT+TGG | + | chr2_2:58517269-58517288 | Msa0260720:intron | 45.0% | |
| GATTCCTCTCTGAGTTGTGT+CGG | + | chr2_2:58517376-58517395 | Msa0260720:intron | 45.0% | |
| !! | CTTTGCTCTGGGAGTAGTTA+GGG | + | chr2_2:58517401-58517420 | Msa0260720:intron | 45.0% |
| TGCGATGAGTAGCTAACACT+TGG | - | chr2_2:58517966-58517985 | None:intergenic | 45.0% | |
| GCTGATGCATTAGACTCCTT+CGG | - | chr2_2:58516728-58516747 | None:intergenic | 45.0% | |
| CCTACTATCTTACAGCTCCA+TGG | - | chr2_2:58516797-58516816 | None:intergenic | 45.0% | |
| CCATGGAGCTGTAAGATAGT+AGG | + | chr2_2:58516794-58516813 | Msa0260720:CDS | 45.0% | |
| AGTGGCTGAAGTTACTAGTG+AGG | + | chr2_2:58517163-58517182 | Msa0260720:intron | 45.0% | |
| AGCGCTTATCCCTTAGAAGT+TGG | + | chr2_2:58517269-58517288 | Msa0260720:intron | 45.0% | |
| GATTCCTCTCTGAGTTGTGT+CGG | + | chr2_2:58517376-58517395 | Msa0260720:intron | 45.0% | |
| !! | CTTTGCTCTGGGAGTAGTTA+GGG | + | chr2_2:58517401-58517420 | Msa0260720:intron | 45.0% |
| TGCGATGAGTAGCTAACACT+TGG | - | chr2_2:58517966-58517985 | None:intergenic | 45.0% | |
| TTTCTGTTCAGGGCCAGAGT+AGG | + | chr2_2:58517354-58517373 | Msa0260720:intron | 50.0% | |
| CTCAGAGAGGAATCCTACTC+TGG | - | chr2_2:58517370-58517389 | None:intergenic | 50.0% | |
| TTGTGTCGGAGCTTTGCTCT+GGG | + | chr2_2:58517390-58517409 | Msa0260720:intron | 50.0% | |
| !! | GCTTTGCTCTGGGAGTAGTT+AGG | + | chr2_2:58517400-58517419 | Msa0260720:intron | 50.0% |
| GGGTTATAGACGAGGAAGGA+GGG | - | chr2_2:58517666-58517685 | None:intergenic | 50.0% | |
| AGGGTTATAGACGAGGAAGG+AGG | - | chr2_2:58517667-58517686 | None:intergenic | 50.0% | |
| !! | GCTTTGGAACGTGTGCTTAC+AGG | + | chr2_2:58517891-58517910 | Msa0260720:CDS | 50.0% |
| TTTCTGTTCAGGGCCAGAGT+AGG | + | chr2_2:58517354-58517373 | Msa0260720:intron | 50.0% | |
| CTCAGAGAGGAATCCTACTC+TGG | - | chr2_2:58517370-58517389 | None:intergenic | 50.0% | |
| TTGTGTCGGAGCTTTGCTCT+GGG | + | chr2_2:58517390-58517409 | Msa0260720:intron | 50.0% | |
| !! | GCTTTGCTCTGGGAGTAGTT+AGG | + | chr2_2:58517400-58517419 | Msa0260720:intron | 50.0% |
| GGGTTATAGACGAGGAAGGA+GGG | - | chr2_2:58517666-58517685 | None:intergenic | 50.0% | |
| AGGGTTATAGACGAGGAAGG+AGG | - | chr2_2:58517667-58517686 | None:intergenic | 50.0% | |
| !! | GCTTTGGAACGTGTGCTTAC+AGG | + | chr2_2:58517891-58517910 | Msa0260720:CDS | 50.0% |
| AGCTCCGACACAACTCAGAG+AGG | - | chr2_2:58517383-58517402 | None:intergenic | 55.0% | |
| GTTGTGTCGGAGCTTTGCTC+TGG | + | chr2_2:58517389-58517408 | Msa0260720:intron | 55.0% | |
| AGCTCCGACACAACTCAGAG+AGG | - | chr2_2:58517383-58517402 | None:intergenic | 55.0% | |
| GTTGTGTCGGAGCTTTGCTC+TGG | + | chr2_2:58517389-58517408 | Msa0260720:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 58516692 | 58518040 | 58516692 | ID=Msa0260720;Name=Msa0260720 |
| chr2_2 | mRNA | 58516692 | 58518040 | 58516692 | ID=Msa0260720-mRNA-1;Parent=Msa0260720;Name=Msa0260720-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|1|0.5|1|1|1|2|0|120 |
| chr2_2 | exon | 58516692 | 58516874 | 58516692 | ID=Msa0260720-mRNA-1:exon:17994;Parent=Msa0260720-mRNA-1 |
| chr2_2 | exon | 58517864 | 58518040 | 58517864 | ID=Msa0260720-mRNA-1:exon:17995;Parent=Msa0260720-mRNA-1 |
| chr2_2 | CDS | 58516692 | 58516874 | 58516692 | ID=Msa0260720-mRNA-1:cds;Parent=Msa0260720-mRNA-1 |
| chr2_2 | CDS | 58517864 | 58518040 | 58517864 | ID=Msa0260720-mRNA-1:cds;Parent=Msa0260720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
