Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340740 | XP_013463097.2 | 95.506 | 89 | 4 | 0 | 1 | 89 | 238 | 326 | 4.85e-52 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340740 | sp|Q8RWB8|UPL6_ARATH | 46.739 | 92 | 45 | 2 | 2 | 89 | 198 | 289 | 8.32e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0340740 | 0.816451 | 5.493356e-52 | -8.615850e-47 |
| Msa0014710 | Msa0340740 | 0.817475 | 3.235256e-52 | -8.615850e-47 |
| Msa0026910 | Msa0340740 | 0.832013 | 1.204190e-55 | -8.615850e-47 |
| Msa0045790 | Msa0340740 | 0.801044 | 1.083967e-48 | -8.615850e-47 |
| Msa0058600 | Msa0340740 | 0.815498 | 8.962453e-52 | -8.615850e-47 |
| Msa0105070 | Msa0340740 | 0.823016 | 1.737885e-53 | -8.615850e-47 |
| Msa0114430 | Msa0340740 | 0.802005 | 6.887094e-49 | -8.615850e-47 |
| Msa0123300 | Msa0340740 | 0.818660 | 1.745398e-52 | -8.615850e-47 |
| Msa0127800 | Msa0340740 | 0.800214 | 1.600763e-48 | -8.615850e-47 |
| Msa0131770 | Msa0340740 | 0.806476 | 8.076272e-50 | -8.615850e-47 |
| Msa0166870 | Msa0340740 | 0.804589 | 2.009164e-49 | -8.615850e-47 |
| Msa0223010 | Msa0340740 | 0.819785 | 9.676420e-53 | -8.615850e-47 |
| Msa0251270 | Msa0340740 | 0.800185 | 1.622348e-48 | -8.615850e-47 |
| Msa0260720 | Msa0340740 | 0.809603 | 1.744157e-50 | -8.615850e-47 |
| Msa0288100 | Msa0340740 | 0.800771 | 1.232537e-48 | -8.615850e-47 |
| Msa0321080 | Msa0340740 | 0.801127 | 1.042403e-48 | -8.615850e-47 |
| Msa0330340 | Msa0340740 | 0.800012 | 1.759497e-48 | -8.615850e-47 |
| Msa0340740 | Msa0359030 | 0.824507 | 7.775290e-54 | -8.615850e-47 |
| Msa0340740 | Msa0361780 | 0.803702 | 3.072383e-49 | -8.615850e-47 |
| Msa0340740 | Msa0388960 | 0.805738 | 1.154903e-49 | -8.615850e-47 |
| Msa0340740 | Msa0426900 | 0.806455 | 8.159553e-50 | -8.615850e-47 |
| Msa0340740 | Msa0484650 | 0.829742 | 4.340692e-55 | -8.615850e-47 |
| Msa0340740 | Msa0484780 | 0.813165 | 2.938100e-51 | -8.615850e-47 |
| Msa0340740 | Msa0516170 | 0.800950 | 1.133124e-48 | -8.615850e-47 |
| Msa0340740 | Msa0518380 | 0.820983 | 5.140778e-53 | -8.615850e-47 |
| Msa0340740 | Msa0532350 | 0.821603 | 3.698220e-53 | -8.615850e-47 |
| Msa0340740 | Msa0613440 | 0.807534 | 4.822157e-50 | -8.615850e-47 |
| Msa0340740 | Msa0620960 | 0.800469 | 1.420191e-48 | -8.615850e-47 |
| Msa0340740 | Msa0622650 | 0.804269 | 2.343044e-49 | -8.615850e-47 |
| Msa0340740 | Msa0650630 | 0.808674 | 2.757442e-50 | -8.615850e-47 |
| Msa0340740 | Msa0661320 | 0.814151 | 1.782578e-51 | -8.615850e-47 |
| Msa0340740 | Msa0685750 | 0.808939 | 2.420907e-50 | -8.615850e-47 |
| Msa0340740 | Msa0688070 | 0.813764 | 2.169494e-51 | -8.615850e-47 |
| Msa0340740 | Msa0688480 | 0.805210 | 1.490229e-49 | -8.615850e-47 |
| Msa0340740 | Msa0731940 | 0.801333 | 9.460603e-49 | -8.615850e-47 |
| Msa0340740 | Msa0748730 | 0.806124 | 9.579390e-50 | -8.615850e-47 |
| Msa0340740 | Msa0753720 | 0.816136 | 6.458950e-52 | -8.615850e-47 |
| Msa0340740 | Msa0760130 | 0.847162 | 1.376989e-59 | -8.615850e-47 |
| Msa0340740 | Msa0762360 | 0.825813 | 3.819490e-54 | -8.615850e-47 |
| Msa0340740 | Msa0763890 | 0.814189 | 1.748856e-51 | -8.615850e-47 |
| Msa0340740 | Msa0763920 | 0.800368 | 1.489312e-48 | -8.615850e-47 |
| Msa0340740 | Msa0766630 | 0.809223 | 2.103737e-50 | -8.615850e-47 |
| Msa0340740 | Msa0768290 | 0.817913 | 2.576765e-52 | -8.615850e-47 |
| Msa0340740 | Msa0810220 | 0.802946 | 4.406721e-49 | -8.615850e-47 |
| Msa0340740 | Msa0817460 | 0.812444 | 4.225749e-51 | -8.615850e-47 |
| Msa0340740 | Msa0831850 | 0.808530 | 2.960564e-50 | -8.615850e-47 |
| Msa0340740 | Msa0868160 | 0.813621 | 2.333405e-51 | -8.615850e-47 |
| Msa0340740 | Msa0892080 | 0.804903 | 1.727414e-49 | -8.615850e-47 |
| Msa0340740 | Msa0924310 | 0.816031 | 6.818763e-52 | -8.615850e-47 |
| Msa0340740 | Msa0927310 | 0.801701 | 7.951250e-49 | -8.615850e-47 |
| Msa0340740 | Msa0953120 | 0.806026 | 1.004627e-49 | -8.615850e-47 |
| Msa0340740 | Msa0969450 | 0.830763 | 2.445114e-55 | -8.615850e-47 |
| Msa0340740 | Msa0969520 | 0.812088 | 5.054404e-51 | -8.615850e-47 |
| Msa0340740 | Msa1028970 | 0.801249 | 9.845201e-49 | -8.615850e-47 |
| Msa0340740 | Msa1036610 | 0.802636 | 5.106172e-49 | -8.615850e-47 |
| Msa0340740 | Msa1052330 | 0.808006 | 3.827451e-50 | -8.615850e-47 |
| Msa0340740 | Msa1075650 | 0.811469 | 6.891996e-51 | -8.615850e-47 |
| Msa0340740 | Msa1080960 | 0.809646 | 1.707004e-50 | -8.615850e-47 |
| Msa0340740 | Msa1081330 | 0.820166 | 7.919530e-53 | -8.615850e-47 |
| Msa0340740 | Msa1082500 | 0.802357 | 5.830921e-49 | -8.615850e-47 |
| Msa0340740 | Msa1098250 | 0.813209 | 2.874077e-51 | -8.615850e-47 |
| Msa0340740 | Msa1098270 | 0.802945 | 4.408134e-49 | -8.615850e-47 |
| Msa0340740 | Msa1121490 | 0.801355 | 9.365410e-49 | -8.615850e-47 |
| Msa0340740 | Msa1137570 | 0.810015 | 1.422133e-50 | -8.615850e-47 |
| Msa0340740 | Msa1147740 | 0.805961 | 1.036879e-49 | -8.615850e-47 |
| Msa0340740 | Msa1215920 | 0.811595 | 6.471244e-51 | -8.615850e-47 |
| Msa0340740 | Msa1221050 | 0.802913 | 4.476626e-49 | -8.615850e-47 |
| Msa0340740 | Msa1224480 | 0.810522 | 1.105744e-50 | -8.615850e-47 |
| Msa0340740 | Msa1284680 | 0.813266 | 2.792708e-51 | -8.615850e-47 |
| Msa0340740 | Msa1297290 | 0.816024 | 6.844227e-52 | -8.615850e-47 |
| Msa0340740 | Msa1313150 | 0.804353 | 2.249860e-49 | -8.615850e-47 |
| Msa0340740 | Msa1333730 | 0.816322 | 5.871456e-52 | -8.615850e-47 |
| Msa0340740 | Msa1353470 | 0.815888 | 7.340764e-52 | -8.615850e-47 |
| Msa0340740 | Msa1372760 | 0.805080 | 1.586459e-49 | -8.615850e-47 |
| Msa0340740 | Msa1378940 | 0.802359 | 5.825606e-49 | -8.615850e-47 |
| Msa0340740 | Msa1385000 | 0.816693 | 4.848949e-52 | -8.615850e-47 |
| Msa0340740 | Msa1403480 | 0.803132 | 4.034235e-49 | -8.615850e-47 |
| Msa0340740 | Msa1411020 | 0.800045 | 1.732570e-48 | -8.615850e-47 |
| Msa0340740 | Msa1423390 | 0.801483 | 8.816713e-49 | -8.615850e-47 |
| Msa0340740 | Msa1423880 | 0.801981 | 6.964866e-49 | -8.615850e-47 |
| Msa0340740 | Msa1427230 | 0.820141 | 8.023095e-53 | -8.615850e-47 |
| Msa0340740 | Msa1434350 | 0.800867 | 1.178259e-48 | -8.615850e-47 |
| Msa0340740 | Msa1435270 | 0.801189 | 1.012739e-48 | -8.615850e-47 |
| Msa0340740 | Msa1436480 | 0.810823 | 9.517702e-51 | -8.615850e-47 |
| Msa0340740 | Msa1439320 | 0.804145 | 2.486418e-49 | -8.615850e-47 |
| Msa0340740 | Msa1440370 | 0.802444 | 5.593667e-49 | -8.615850e-47 |
| Msa0340740 | Msa1440740 | 0.812053 | 5.143609e-51 | -8.615850e-47 |
| Msa0340740 | Msa1440810 | 0.801745 | 7.789481e-49 | -8.615850e-47 |
| Msa0340740 | Msa1460830 | 0.812318 | 4.504047e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340740 | MtrunA17_Chr2g0293881 | 95.506 | 89 | 4 | 0 | 1 | 89 | 238 | 326 | 4.47e-56 | 185 |
| Msa0340740 | MtrunA17_Chr2g0293841 | 88.764 | 89 | 10 | 0 | 1 | 89 | 197 | 285 | 1.61e-53 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340740 | AT3G17205.2 | 46.739 | 92 | 45 | 2 | 2 | 89 | 198 | 289 | 8.45e-24 | 94.7 |
| Msa0340740 | AT3G17205.1 | 46.739 | 92 | 45 | 2 | 2 | 89 | 198 | 289 | 8.46e-24 | 94.7 |
| Msa0340740 | AT3G17205.3 | 46.739 | 92 | 45 | 2 | 2 | 89 | 198 | 289 | 8.46e-24 | 94.7 |
Find 18 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTACAATTCCATTCTTA+TGG | 0.230114 | 2_4:+62144822 | Msa0340740:CDS |
| GCTTTGGAACGTGTGCTTAC+AGG | 0.301950 | 2_4:+62144725 | Msa0340740:CDS |
| CTTAGACAGATCATTCTTAC+AGG | 0.310293 | 2_4:+62143683 | Msa0340740:CDS |
| ATTGCACTAACTATATTTGA+TGG | 0.384918 | 2_4:+62144875 | Msa0340740:CDS |
| AATAAATACCTGTCTTAAGT+TGG | 0.405916 | 2_4:-62144855 | None:intergenic |
| AAAATGTATAGGATCGGCTT+TGG | 0.443775 | 2_4:+62144709 | Msa0340740:CDS |
| ATAAATACCTGTCTTAAGTT+GGG | 0.444021 | 2_4:-62144854 | None:intergenic |
| CCATGGAGCTGTAAGATAGT+AGG | 0.482104 | 2_4:+62143629 | Msa0340740:CDS |
| GCCATAAGAATGGAATTGTA+AGG | 0.486453 | 2_4:-62144823 | None:intergenic |
| TGCGATGAGTAGCTAACACT+TGG | 0.557053 | 2_4:-62144797 | None:intergenic |
| GGATATTTCTCTCAAAACAA+TGG | 0.568363 | 2_4:+62143650 | Msa0340740:CDS |
| ACAGATCATTCTTACAGGAA+AGG | 0.571730 | 2_4:+62143688 | Msa0340740:CDS |
| CCTACTATCTTACAGCTCCA+TGG | 0.575826 | 2_4:-62143629 | None:intergenic |
| TGATAGATCTCAAACTGCCA+TGG | 0.588288 | 2_4:+62143612 | None:intergenic |
| TTAACTTCTAGTTATAACAA+AGG | 0.608629 | 2_4:-62144907 | None:intergenic |
| TCAATGTCTGAACAAATACA+TGG | 0.629145 | 2_4:-62144773 | None:intergenic |
| GCACTAACTATATTTGATGG+AGG | 0.634251 | 2_4:+62144878 | Msa0340740:CDS |
| ACAGGTGTAATGTGTCACAT+TGG | 0.648085 | 2_4:+62144743 | Msa0340740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTTATATACATGA+AGG | - | chr2_4:62144338-62144357 | None:intergenic | 10.0% |
| !! | TAATTAATTTATATACATGA+AGG | - | chr2_4:62144338-62144357 | None:intergenic | 10.0% |
| !! | TATTTATGAAGATATGAATG+AGG | + | chr2_4:62143803-62143822 | Msa0340740:intron | 20.0% |
| !! | ATAAATTAATTAGATTCAGC+TGG | + | chr2_4:62144346-62144365 | Msa0340740:intron | 20.0% |
| !! | TAAATTAATTAGATTCAGCT+GGG | + | chr2_4:62144347-62144366 | Msa0340740:intron | 20.0% |
| !! | GCATATAGTTCAAAATTATA+GGG | - | chr2_4:62144520-62144539 | None:intergenic | 20.0% |
| !! | TGCATATAGTTCAAAATTAT+AGG | - | chr2_4:62144521-62144540 | None:intergenic | 20.0% |
| !! | TATTTATGAAGATATGAATG+AGG | + | chr2_4:62143803-62143822 | Msa0340740:intron | 20.0% |
| !! | ATAAATTAATTAGATTCAGC+TGG | + | chr2_4:62144346-62144365 | Msa0340740:intron | 20.0% |
| !! | TAAATTAATTAGATTCAGCT+GGG | + | chr2_4:62144347-62144366 | Msa0340740:intron | 20.0% |
| !! | GCATATAGTTCAAAATTATA+GGG | - | chr2_4:62144520-62144539 | None:intergenic | 20.0% |
| !! | TGCATATAGTTCAAAATTAT+AGG | - | chr2_4:62144521-62144540 | None:intergenic | 20.0% |
| ! | TCAATATAATCAACATGACA+GGG | - | chr2_4:62143766-62143785 | None:intergenic | 25.0% |
| ! | ATCAATATAATCAACATGAC+AGG | - | chr2_4:62143767-62143786 | None:intergenic | 25.0% |
| !! | TTGAATGAAGAAAAGCATAT+AGG | + | chr2_4:62143841-62143860 | Msa0340740:intron | 25.0% |
| !! | TGAATGAAGAAAAGCATATA+GGG | + | chr2_4:62143842-62143861 | Msa0340740:intron | 25.0% |
| !!! | AATAATAAGAAGGGTACTAT+AGG | + | chr2_4:62143928-62143947 | Msa0340740:intron | 25.0% |
| ! | TTATAAACTCTCCATATCTT+TGG | - | chr2_4:62143958-62143977 | None:intergenic | 25.0% |
| ! | GATGGTAATTAAGGAAAATA+GGG | - | chr2_4:62144308-62144327 | None:intergenic | 25.0% |
| ! | AGATGGTAATTAAGGAAAAT+AGG | - | chr2_4:62144309-62144328 | None:intergenic | 25.0% |
| !! | TCGATAAACTTTTACAGAAA+AGG | - | chr2_4:62144554-62144573 | None:intergenic | 25.0% |
| ! | TGTTTGTATATTTAATCCAC+AGG | - | chr2_4:62144593-62144612 | None:intergenic | 25.0% |
| ! | TCCTTTCATCATAAGAAAAT+CGG | + | chr2_4:62144623-62144642 | Msa0340740:intron | 25.0% |
| ! | TAGTTTATGCATATAAGTGA+TGG | - | chr2_4:62144659-62144678 | None:intergenic | 25.0% |
| ! | GATAATGCAGAAAAATGTAT+AGG | + | chr2_4:62144698-62144717 | Msa0340740:CDS | 25.0% |
| ! | ATAAATACCTGTCTTAAGTT+GGG | - | chr2_4:62144857-62144876 | None:intergenic | 25.0% |
| ! | AATAAATACCTGTCTTAAGT+TGG | - | chr2_4:62144858-62144877 | None:intergenic | 25.0% |
| ! | ATTGCACTAACTATATTTGA+TGG | + | chr2_4:62144875-62144894 | Msa0340740:CDS | 25.0% |
| ! | TCAATATAATCAACATGACA+GGG | - | chr2_4:62143766-62143785 | None:intergenic | 25.0% |
| ! | ATCAATATAATCAACATGAC+AGG | - | chr2_4:62143767-62143786 | None:intergenic | 25.0% |
| !! | TTGAATGAAGAAAAGCATAT+AGG | + | chr2_4:62143841-62143860 | Msa0340740:intron | 25.0% |
| !! | TGAATGAAGAAAAGCATATA+GGG | + | chr2_4:62143842-62143861 | Msa0340740:intron | 25.0% |
| !!! | AATAATAAGAAGGGTACTAT+AGG | + | chr2_4:62143928-62143947 | Msa0340740:intron | 25.0% |
| ! | TTATAAACTCTCCATATCTT+TGG | - | chr2_4:62143958-62143977 | None:intergenic | 25.0% |
| ! | GATGGTAATTAAGGAAAATA+GGG | - | chr2_4:62144308-62144327 | None:intergenic | 25.0% |
| ! | AGATGGTAATTAAGGAAAAT+AGG | - | chr2_4:62144309-62144328 | None:intergenic | 25.0% |
| !! | TCGATAAACTTTTACAGAAA+AGG | - | chr2_4:62144554-62144573 | None:intergenic | 25.0% |
| ! | TGTTTGTATATTTAATCCAC+AGG | - | chr2_4:62144593-62144612 | None:intergenic | 25.0% |
| ! | TCCTTTCATCATAAGAAAAT+CGG | + | chr2_4:62144623-62144642 | Msa0340740:intron | 25.0% |
| ! | TAGTTTATGCATATAAGTGA+TGG | - | chr2_4:62144659-62144678 | None:intergenic | 25.0% |
| ! | GATAATGCAGAAAAATGTAT+AGG | + | chr2_4:62144698-62144717 | Msa0340740:CDS | 25.0% |
| ! | ATAAATACCTGTCTTAAGTT+GGG | - | chr2_4:62144857-62144876 | None:intergenic | 25.0% |
| ! | AATAAATACCTGTCTTAAGT+TGG | - | chr2_4:62144858-62144877 | None:intergenic | 25.0% |
| ! | ATTGCACTAACTATATTTGA+TGG | + | chr2_4:62144875-62144894 | Msa0340740:CDS | 25.0% |
| GGATATTTCTCTCAAAACAA+TGG | + | chr2_4:62143650-62143669 | Msa0340740:CDS | 30.0% | |
| ! | TGACAGGGATTAATTTTAGA+GGG | - | chr2_4:62143751-62143770 | None:intergenic | 30.0% |
| ! | ATGACAGGGATTAATTTTAG+AGG | - | chr2_4:62143752-62143771 | None:intergenic | 30.0% |
| ! | GAATGAAGAAAAGCATATAG+GGG | + | chr2_4:62143843-62143862 | Msa0340740:intron | 30.0% |
| AGAAAAGATAAGAAGACTAG+TGG | + | chr2_4:62143979-62143998 | Msa0340740:intron | 30.0% | |
| CGCTTTAGTAGTATTTAAGT+AGG | + | chr2_4:62144131-62144150 | Msa0340740:intron | 30.0% | |
| ! | TAGGAGTAATAGTCTTTTAG+AGG | + | chr2_4:62144150-62144169 | Msa0340740:intron | 30.0% |
| ! | AGGAGTAATAGTCTTTTAGA+GGG | + | chr2_4:62144151-62144170 | Msa0340740:intron | 30.0% |
| GGTTACAAAGATGGTAATTA+AGG | - | chr2_4:62144317-62144336 | None:intergenic | 30.0% | |
| ATACATGAAGGTTACAAAGA+TGG | - | chr2_4:62144326-62144345 | None:intergenic | 30.0% | |
| !! | AAGACTTTGAGTTGTGATTA+TGG | - | chr2_4:62144464-62144483 | None:intergenic | 30.0% |
| AAATTATAGGGTTATAGACG+AGG | - | chr2_4:62144508-62144527 | None:intergenic | 30.0% | |
| ATAAAGAAAACATGTTCCTG+TGG | + | chr2_4:62144574-62144593 | Msa0340740:intron | 30.0% | |
| ! | TCCGATTTTCTTATGATGAA+AGG | - | chr2_4:62144627-62144646 | None:intergenic | 30.0% |
| TGCAGAAAAATGTATAGGAT+CGG | + | chr2_4:62144703-62144722 | Msa0340740:CDS | 30.0% | |
| TCAATGTCTGAACAAATACA+TGG | - | chr2_4:62144776-62144795 | None:intergenic | 30.0% | |
| TCCTTACAATTCCATTCTTA+TGG | + | chr2_4:62144822-62144841 | Msa0340740:CDS | 30.0% | |
| GGATATTTCTCTCAAAACAA+TGG | + | chr2_4:62143650-62143669 | Msa0340740:CDS | 30.0% | |
| ! | TGACAGGGATTAATTTTAGA+GGG | - | chr2_4:62143751-62143770 | None:intergenic | 30.0% |
| ! | ATGACAGGGATTAATTTTAG+AGG | - | chr2_4:62143752-62143771 | None:intergenic | 30.0% |
| ! | GAATGAAGAAAAGCATATAG+GGG | + | chr2_4:62143843-62143862 | Msa0340740:intron | 30.0% |
| AGAAAAGATAAGAAGACTAG+TGG | + | chr2_4:62143979-62143998 | Msa0340740:intron | 30.0% | |
| CGCTTTAGTAGTATTTAAGT+AGG | + | chr2_4:62144131-62144150 | Msa0340740:intron | 30.0% | |
| ! | TAGGAGTAATAGTCTTTTAG+AGG | + | chr2_4:62144150-62144169 | Msa0340740:intron | 30.0% |
| ! | AGGAGTAATAGTCTTTTAGA+GGG | + | chr2_4:62144151-62144170 | Msa0340740:intron | 30.0% |
| GGTTACAAAGATGGTAATTA+AGG | - | chr2_4:62144317-62144336 | None:intergenic | 30.0% | |
| ATACATGAAGGTTACAAAGA+TGG | - | chr2_4:62144326-62144345 | None:intergenic | 30.0% | |
| !! | AAGACTTTGAGTTGTGATTA+TGG | - | chr2_4:62144464-62144483 | None:intergenic | 30.0% |
| AAATTATAGGGTTATAGACG+AGG | - | chr2_4:62144508-62144527 | None:intergenic | 30.0% | |
| ATAAAGAAAACATGTTCCTG+TGG | + | chr2_4:62144574-62144593 | Msa0340740:intron | 30.0% | |
| ! | TCCGATTTTCTTATGATGAA+AGG | - | chr2_4:62144627-62144646 | None:intergenic | 30.0% |
| TGCAGAAAAATGTATAGGAT+CGG | + | chr2_4:62144703-62144722 | Msa0340740:CDS | 30.0% | |
| TCAATGTCTGAACAAATACA+TGG | - | chr2_4:62144776-62144795 | None:intergenic | 30.0% | |
| TCCTTACAATTCCATTCTTA+TGG | + | chr2_4:62144822-62144841 | Msa0340740:CDS | 30.0% | |
| CTTAGACAGATCATTCTTAC+AGG | + | chr2_4:62143683-62143702 | Msa0340740:CDS | 35.0% | |
| ACAGATCATTCTTACAGGAA+AGG | + | chr2_4:62143688-62143707 | Msa0340740:CDS | 35.0% | |
| TCAAGCAGCATTAGAATTCT+AGG | - | chr2_4:62143891-62143910 | None:intergenic | 35.0% | |
| ! | TAATGCTGCTTGAAACATGT+TGG | + | chr2_4:62143898-62143917 | Msa0340740:intron | 35.0% |
| ! | AATGCTGCTTGAAACATGTT+GGG | + | chr2_4:62143899-62143918 | Msa0340740:intron | 35.0% |
| TGGGAACGCTAATAATAAGA+AGG | + | chr2_4:62143918-62143937 | Msa0340740:intron | 35.0% | |
| GGGAACGCTAATAATAAGAA+GGG | + | chr2_4:62143919-62143938 | Msa0340740:intron | 35.0% | |
| CTATAGGAAGACCAAAGATA+TGG | + | chr2_4:62143944-62143963 | Msa0340740:intron | 35.0% | |
| AGGAGCCTTAGTAAACTATA+GGG | + | chr2_4:62144017-62144036 | Msa0340740:intron | 35.0% | |
| AGACACCCTATAGTTTACTA+AGG | - | chr2_4:62144025-62144044 | None:intergenic | 35.0% | |
| AGCGATAAACCAACTTCTAA+GGG | - | chr2_4:62144115-62144134 | None:intergenic | 35.0% | |
| AAGCGATAAACCAACTTCTA+AGG | - | chr2_4:62144116-62144135 | None:intergenic | 35.0% | |
| ! | ACAGATTGTGTTTCTGTTCA+GGG | + | chr2_4:62144178-62144197 | Msa0340740:intron | 35.0% |
| AAAAGACTAAGCAAGAGACT+CGG | - | chr2_4:62144428-62144447 | None:intergenic | 35.0% | |
| CTATCTGAATGATATACTGC+AGG | + | chr2_4:62144676-62144695 | Msa0340740:intron | 35.0% | |
| ! | AAAATGTATAGGATCGGCTT+TGG | + | chr2_4:62144709-62144728 | Msa0340740:CDS | 35.0% |
| GCCATAAGAATGGAATTGTA+AGG | - | chr2_4:62144826-62144845 | None:intergenic | 35.0% | |
| GGAAAAACATGCCATAAGAA+TGG | - | chr2_4:62144836-62144855 | None:intergenic | 35.0% | |
| ! | TGTTTTTCCCAACTTAAGAC+AGG | + | chr2_4:62144847-62144866 | Msa0340740:CDS | 35.0% |
| GCACTAACTATATTTGATGG+AGG | + | chr2_4:62144878-62144897 | Msa0340740:CDS | 35.0% | |
| CTTAGACAGATCATTCTTAC+AGG | + | chr2_4:62143683-62143702 | Msa0340740:CDS | 35.0% | |
| ACAGATCATTCTTACAGGAA+AGG | + | chr2_4:62143688-62143707 | Msa0340740:CDS | 35.0% | |
| TCAAGCAGCATTAGAATTCT+AGG | - | chr2_4:62143891-62143910 | None:intergenic | 35.0% | |
| ! | TAATGCTGCTTGAAACATGT+TGG | + | chr2_4:62143898-62143917 | Msa0340740:intron | 35.0% |
| ! | AATGCTGCTTGAAACATGTT+GGG | + | chr2_4:62143899-62143918 | Msa0340740:intron | 35.0% |
| TGGGAACGCTAATAATAAGA+AGG | + | chr2_4:62143918-62143937 | Msa0340740:intron | 35.0% | |
| GGGAACGCTAATAATAAGAA+GGG | + | chr2_4:62143919-62143938 | Msa0340740:intron | 35.0% | |
| CTATAGGAAGACCAAAGATA+TGG | + | chr2_4:62143944-62143963 | Msa0340740:intron | 35.0% | |
| AGGAGCCTTAGTAAACTATA+GGG | + | chr2_4:62144017-62144036 | Msa0340740:intron | 35.0% | |
| AGACACCCTATAGTTTACTA+AGG | - | chr2_4:62144025-62144044 | None:intergenic | 35.0% | |
| AGCGATAAACCAACTTCTAA+GGG | - | chr2_4:62144115-62144134 | None:intergenic | 35.0% | |
| AAGCGATAAACCAACTTCTA+AGG | - | chr2_4:62144116-62144135 | None:intergenic | 35.0% | |
| ! | ACAGATTGTGTTTCTGTTCA+GGG | + | chr2_4:62144178-62144197 | Msa0340740:intron | 35.0% |
| AAAAGACTAAGCAAGAGACT+CGG | - | chr2_4:62144428-62144447 | None:intergenic | 35.0% | |
| CTATCTGAATGATATACTGC+AGG | + | chr2_4:62144676-62144695 | Msa0340740:intron | 35.0% | |
| ! | AAAATGTATAGGATCGGCTT+TGG | + | chr2_4:62144709-62144728 | Msa0340740:CDS | 35.0% |
| GCCATAAGAATGGAATTGTA+AGG | - | chr2_4:62144826-62144845 | None:intergenic | 35.0% | |
| GGAAAAACATGCCATAAGAA+TGG | - | chr2_4:62144836-62144855 | None:intergenic | 35.0% | |
| ! | TGTTTTTCCCAACTTAAGAC+AGG | + | chr2_4:62144847-62144866 | Msa0340740:CDS | 35.0% |
| GCACTAACTATATTTGATGG+AGG | + | chr2_4:62144878-62144897 | Msa0340740:CDS | 35.0% | |
| GAGGAGCCTTAGTAAACTAT+AGG | + | chr2_4:62144016-62144035 | Msa0340740:intron | 40.0% | |
| ! | GACAGATTGTGTTTCTGTTC+AGG | + | chr2_4:62144177-62144196 | Msa0340740:intron | 40.0% |
| ACTCGAGCATATTCAGAAGA+TGG | + | chr2_4:62144379-62144398 | Msa0340740:intron | 40.0% | |
| GAGCATATTCAGAAGATGGT+TGG | + | chr2_4:62144383-62144402 | Msa0340740:intron | 40.0% | |
| TCAGAAGATGGTTGGATCAA+TGG | + | chr2_4:62144391-62144410 | Msa0340740:intron | 40.0% | |
| AAAGACTAAGCAAGAGACTC+GGG | - | chr2_4:62144427-62144446 | None:intergenic | 40.0% | |
| TATAGGGTTATAGACGAGGA+AGG | - | chr2_4:62144504-62144523 | None:intergenic | 40.0% | |
| ACAGGTGTAATGTGTCACAT+TGG | + | chr2_4:62144743-62144762 | Msa0340740:CDS | 40.0% | |
| GAGGAGCCTTAGTAAACTAT+AGG | + | chr2_4:62144016-62144035 | Msa0340740:intron | 40.0% | |
| ! | GACAGATTGTGTTTCTGTTC+AGG | + | chr2_4:62144177-62144196 | Msa0340740:intron | 40.0% |
| ACTCGAGCATATTCAGAAGA+TGG | + | chr2_4:62144379-62144398 | Msa0340740:intron | 40.0% | |
| GAGCATATTCAGAAGATGGT+TGG | + | chr2_4:62144383-62144402 | Msa0340740:intron | 40.0% | |
| TCAGAAGATGGTTGGATCAA+TGG | + | chr2_4:62144391-62144410 | Msa0340740:intron | 40.0% | |
| AAAGACTAAGCAAGAGACTC+GGG | - | chr2_4:62144427-62144446 | None:intergenic | 40.0% | |
| TATAGGGTTATAGACGAGGA+AGG | - | chr2_4:62144504-62144523 | None:intergenic | 40.0% | |
| ACAGGTGTAATGTGTCACAT+TGG | + | chr2_4:62144743-62144762 | Msa0340740:CDS | 40.0% | |
| CCTACTATCTTACAGCTCCA+TGG | - | chr2_4:62143632-62143651 | None:intergenic | 45.0% | |
| CCATGGAGCTGTAAGATAGT+AGG | + | chr2_4:62143629-62143648 | Msa0340740:CDS | 45.0% | |
| AGTGGCTGAAGTTACTAGTG+AGG | + | chr2_4:62143997-62144016 | Msa0340740:intron | 45.0% | |
| AGCGCTTATCCCTTAGAAGT+TGG | + | chr2_4:62144103-62144122 | Msa0340740:intron | 45.0% | |
| GATTCCTCTCTGAGTTGTGT+CGG | + | chr2_4:62144210-62144229 | Msa0340740:intron | 45.0% | |
| !! | CTTTGCTCTGGGAGTAGTTA+GGG | + | chr2_4:62144235-62144254 | Msa0340740:intron | 45.0% |
| TGCGATGAGTAGCTAACACT+TGG | - | chr2_4:62144800-62144819 | None:intergenic | 45.0% | |
| CCTACTATCTTACAGCTCCA+TGG | - | chr2_4:62143632-62143651 | None:intergenic | 45.0% | |
| CCATGGAGCTGTAAGATAGT+AGG | + | chr2_4:62143629-62143648 | Msa0340740:CDS | 45.0% | |
| AGTGGCTGAAGTTACTAGTG+AGG | + | chr2_4:62143997-62144016 | Msa0340740:intron | 45.0% | |
| AGCGCTTATCCCTTAGAAGT+TGG | + | chr2_4:62144103-62144122 | Msa0340740:intron | 45.0% | |
| GATTCCTCTCTGAGTTGTGT+CGG | + | chr2_4:62144210-62144229 | Msa0340740:intron | 45.0% | |
| !! | CTTTGCTCTGGGAGTAGTTA+GGG | + | chr2_4:62144235-62144254 | Msa0340740:intron | 45.0% |
| TGCGATGAGTAGCTAACACT+TGG | - | chr2_4:62144800-62144819 | None:intergenic | 45.0% | |
| TTTCTGTTCAGGGCCAGAGT+AGG | + | chr2_4:62144188-62144207 | Msa0340740:intron | 50.0% | |
| CTCAGAGAGGAATCCTACTC+TGG | - | chr2_4:62144204-62144223 | None:intergenic | 50.0% | |
| TTGTGTCGGAGCTTTGCTCT+GGG | + | chr2_4:62144224-62144243 | Msa0340740:intron | 50.0% | |
| !! | GCTTTGCTCTGGGAGTAGTT+AGG | + | chr2_4:62144234-62144253 | Msa0340740:intron | 50.0% |
| GGGTTATAGACGAGGAAGGA+GGG | - | chr2_4:62144500-62144519 | None:intergenic | 50.0% | |
| AGGGTTATAGACGAGGAAGG+AGG | - | chr2_4:62144501-62144520 | None:intergenic | 50.0% | |
| !! | GCTTTGGAACGTGTGCTTAC+AGG | + | chr2_4:62144725-62144744 | Msa0340740:CDS | 50.0% |
| TTTCTGTTCAGGGCCAGAGT+AGG | + | chr2_4:62144188-62144207 | Msa0340740:intron | 50.0% | |
| CTCAGAGAGGAATCCTACTC+TGG | - | chr2_4:62144204-62144223 | None:intergenic | 50.0% | |
| TTGTGTCGGAGCTTTGCTCT+GGG | + | chr2_4:62144224-62144243 | Msa0340740:intron | 50.0% | |
| !! | GCTTTGCTCTGGGAGTAGTT+AGG | + | chr2_4:62144234-62144253 | Msa0340740:intron | 50.0% |
| GGGTTATAGACGAGGAAGGA+GGG | - | chr2_4:62144500-62144519 | None:intergenic | 50.0% | |
| AGGGTTATAGACGAGGAAGG+AGG | - | chr2_4:62144501-62144520 | None:intergenic | 50.0% | |
| !! | GCTTTGGAACGTGTGCTTAC+AGG | + | chr2_4:62144725-62144744 | Msa0340740:CDS | 50.0% |
| AGCTCCGACACAACTCAGAG+AGG | - | chr2_4:62144217-62144236 | None:intergenic | 55.0% | |
| GTTGTGTCGGAGCTTTGCTC+TGG | + | chr2_4:62144223-62144242 | Msa0340740:intron | 55.0% | |
| AGCTCCGACACAACTCAGAG+AGG | - | chr2_4:62144217-62144236 | None:intergenic | 55.0% | |
| GTTGTGTCGGAGCTTTGCTC+TGG | + | chr2_4:62144223-62144242 | Msa0340740:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 62143620 | 62144922 | 62143620 | ID=Msa0340740;Name=Msa0340740 |
| chr2_4 | mRNA | 62143620 | 62144922 | 62143620 | ID=Msa0340740-mRNA-1;Parent=Msa0340740;Name=Msa0340740-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0|1|0|1|2|0|104 |
| chr2_4 | exon | 62143620 | 62143709 | 62143620 | ID=Msa0340740-mRNA-1:exon:19702;Parent=Msa0340740-mRNA-1 |
| chr2_4 | exon | 62144698 | 62144922 | 62144698 | ID=Msa0340740-mRNA-1:exon:19703;Parent=Msa0340740-mRNA-1 |
| chr2_4 | CDS | 62143620 | 62143709 | 62143620 | ID=Msa0340740-mRNA-1:cds;Parent=Msa0340740-mRNA-1 |
| chr2_4 | CDS | 62144698 | 62144922 | 62144698 | ID=Msa0340740-mRNA-1:cds;Parent=Msa0340740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
