Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260730 | XP_013463097.2 | 88.395 | 517 | 32 | 4 | 1 | 491 | 325 | 839 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260730 | sp|Q8RWB8|UPL6_ARATH | 50.591 | 423 | 170 | 8 | 1 | 393 | 288 | 701 | 1.77e-120 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260730 | A0A396J8U6 | 88.395 | 517 | 32 | 4 | 1 | 491 | 325 | 839 | 0.0 | 917 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0199580 | Msa0260730 | 0.829842 | 4.104335e-55 | -8.615850e-47 |
| Msa0260730 | Msa0280250 | 0.821579 | 3.745793e-53 | -8.615850e-47 |
| Msa0260730 | Msa0340750 | 0.940130 | 3.942124e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260730 | MtrunA17_Chr2g0293881 | 88.395 | 517 | 32 | 4 | 1 | 491 | 325 | 839 | 0.0 | 917 |
| Msa0260730 | MtrunA17_Chr2g0293841 | 77.833 | 406 | 58 | 3 | 1 | 380 | 284 | 683 | 0.0 | 621 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260730 | AT3G17205.1 | 50.591 | 423 | 170 | 8 | 1 | 393 | 288 | 701 | 1.80e-121 | 380 |
| Msa0260730 | AT3G17205.3 | 50.591 | 423 | 170 | 8 | 1 | 393 | 288 | 701 | 1.80e-121 | 380 |
| Msa0260730 | AT3G17205.2 | 48.456 | 421 | 168 | 6 | 1 | 393 | 288 | 687 | 6.99e-117 | 367 |
Find 132 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTGGCTATTTGAGTTTA+TGG | 0.130876 | 2_2:-58524709 | None:intergenic |
| CCTACCTATGCCTGTCTTCT+TGG | 0.177928 | 2_2:+58520084 | Msa0260730:CDS |
| CTTGGAAATATATTAGAAAT+TGG | 0.205553 | 2_2:+58520102 | Msa0260730:CDS |
| CAAGAATGTTTGACCGGTTT+TGG | 0.218101 | 2_2:-58524602 | None:intergenic |
| GGCAAGGTATGATCATATTT+TGG | 0.237666 | 2_2:+58524377 | Msa0260730:CDS |
| AAGCCAATTCTTACCTTTGC+AGG | 0.275655 | 2_2:-58523893 | None:intergenic |
| TTACCTTTGCAGGTGGTATC+AGG | 0.298160 | 2_2:-58523883 | None:intergenic |
| AGTAGCTCTGGATAGGAAAT+TGG | 0.312730 | 2_2:+58521464 | Msa0260730:CDS |
| TTTGTACTGCTTGTCCTAAC+TGG | 0.334967 | 2_2:-58523026 | None:intergenic |
| ACCTGACTGTTCATTCGATA+TGG | 0.341026 | 2_2:+58520143 | Msa0260730:CDS |
| CATGCATCGGTGGCGGTGGC+GGG | 0.345353 | 2_2:-58524527 | None:intergenic |
| TCCTCATATGTTTCAACATT+CGG | 0.346747 | 2_2:-58524630 | None:intergenic |
| GGTAGAAAACTGATCAGATT+TGG | 0.347970 | 2_2:-58520039 | None:intergenic |
| CAGCTATTGGTGCAGTTTGT+GGG | 0.354744 | 2_2:+58521764 | Msa0260730:CDS |
| ACATGCATCGGTGGCGGTGG+CGG | 0.371688 | 2_2:-58524528 | None:intergenic |
| CTGACCTTGTTCCTATACTT+TGG | 0.376008 | 2_2:+58521851 | Msa0260730:CDS |
| TGCCAATGGGCTAGATGATA+TGG | 0.376468 | 2_2:+58521735 | Msa0260730:CDS |
| CAGTTAGATCTATTCCAGTT+AGG | 0.385711 | 2_2:+58523012 | Msa0260730:CDS |
| TATGCTAACCCTTTGTTGAA+TGG | 0.386583 | 2_2:-58523063 | None:intergenic |
| TGCTCATATCCTTCAGTGAT+AGG | 0.386984 | 2_2:-58522603 | None:intergenic |
| GGATCTCAGACTGTATTTAC+TGG | 0.387572 | 2_2:+58524342 | Msa0260730:CDS |
| AACAAGGCGTGATCATATTT+CGG | 0.396503 | 2_2:+58524152 | Msa0260730:CDS |
| TGAAGAGAACTCTCCAATCT+TGG | 0.405172 | 2_2:+58524482 | Msa0260730:CDS |
| ATTTACTGGAAATCGGTTCA+TGG | 0.407526 | 2_2:+58524356 | Msa0260730:CDS |
| AGCCTCAACAAGCTGCATTT+AGG | 0.417719 | 2_2:+58524049 | Msa0260730:intron |
| TACTCGCTTCCTTCTGCAAC+TGG | 0.424069 | 2_2:+58521512 | Msa0260730:CDS |
| GCAGCTATTGGTGCAGTTTG+TGG | 0.424379 | 2_2:+58521763 | Msa0260730:CDS |
| AGACTGTATTTACTGGAAAT+CGG | 0.426807 | 2_2:+58524349 | Msa0260730:CDS |
| CTCCTGGTGAACACCAAAAC+CGG | 0.429834 | 2_2:+58524589 | Msa0260730:CDS |
| AGTAACAGCTGCAAGGTCTA+TGG | 0.435642 | 2_2:-58520974 | None:intergenic |
| AGCAAATAAAATTGTAAAGA+AGG | 0.436224 | 2_2:+58523853 | Msa0260730:CDS |
| CCAGGAGAAGTTTCATGTTG+TGG | 0.438294 | 2_2:-58524573 | None:intergenic |
| TTCATAAATTTCCAAAGTAT+AGG | 0.438305 | 2_2:-58521862 | None:intergenic |
| GCTCATATCCTTCAGTGATA+GGG | 0.440723 | 2_2:-58522602 | None:intergenic |
| TACTTTGGAAATTTATGAAA+CGG | 0.445587 | 2_2:+58521866 | Msa0260730:CDS |
| CCATTTGATGAATGTGATGT+TGG | 0.447579 | 2_2:-58520005 | None:intergenic |
| CAGGAGAAGTTTCATGTTGT+GGG | 0.450371 | 2_2:-58524572 | None:intergenic |
| CCAGTGATTTCCATGCTGAC+GGG | 0.450742 | 2_2:+58523700 | Msa0260730:CDS |
| CTGTTGAACAGTCCATTGTA+AGG | 0.459003 | 2_2:+58524406 | Msa0260730:CDS |
| CCAACATCACATTCATCAAA+TGG | 0.463047 | 2_2:+58520005 | Msa0260730:CDS |
| ACATATGAGGATGCCTGAAA+TGG | 0.468185 | 2_2:+58524642 | Msa0260730:exon |
| TTGCAGGTGGTATCAGGAAA+GGG | 0.476065 | 2_2:-58523877 | None:intergenic |
| CCCAGTGATTTCCATGCTGA+CGG | 0.480324 | 2_2:+58523699 | Msa0260730:CDS |
| TGTAACACAGGTTCCAAGAT+TGG | 0.483486 | 2_2:-58524495 | None:intergenic |
| TATTGAAGCCATTCAACAAA+GGG | 0.484398 | 2_2:+58523055 | Msa0260730:CDS |
| TAATATATTTCCAAGAAGAC+AGG | 0.485040 | 2_2:-58520094 | None:intergenic |
| ACAAAAGAAAAGCAAAATCA+AGG | 0.486189 | 2_2:-58524800 | None:intergenic |
| TGAAGTCATGGAAGTAGCTC+TGG | 0.486284 | 2_2:+58521452 | Msa0260730:CDS |
| ATGCATCGGTGGCGGTGGCG+GGG | 0.487315 | 2_2:-58524526 | None:intergenic |
| AATTCATCTGATATATCCTT+AGG | 0.489791 | 2_2:-58520060 | None:intergenic |
| GAGATATTTCAGCTGCCAAT+GGG | 0.493557 | 2_2:+58521722 | Msa0260730:CDS |
| ATTAACCACGGCTGTCTCCT+TGG | 0.495651 | 2_2:-58524725 | None:intergenic |
| ACTATCCGATCTTGTTAAAG+AGG | 0.497400 | 2_2:-58521019 | None:intergenic |
| GGAAGATGCTTATAATTCAA+AGG | 0.500185 | 2_2:+58524173 | Msa0260730:CDS |
| CCCGTCAGCATGGAAATCAC+TGG | 0.502031 | 2_2:-58523700 | None:intergenic |
| AAGGAAAAGAAACATTCCTA+AGG | 0.513013 | 2_2:-58524781 | None:intergenic |
| TGCCTAAATGCAGCTTGTTG+AGG | 0.513148 | 2_2:-58524051 | None:intergenic |
| TCTAACTGAATTAGCAAATG+AGG | 0.514566 | 2_2:-58522997 | None:intergenic |
| TCTTCCCTTAGCTCCACGAT+TGG | 0.514808 | 2_2:+58523652 | Msa0260730:intron |
| AGAGATATTTCAGCTGCCAA+TGG | 0.516832 | 2_2:+58521721 | Msa0260730:CDS |
| TCATGATGCTGAACCATCAC+GGG | 0.519349 | 2_2:-58524462 | None:intergenic |
| GATATGGAGGTTGCAGCTAT+TGG | 0.520857 | 2_2:+58521751 | Msa0260730:CDS |
| CATCGGTGGCGGTGGCGGGG+AGG | 0.525743 | 2_2:-58524523 | None:intergenic |
| CTCACTCTGTAGCTGCAGTT+AGG | 0.528654 | 2_2:+58524085 | Msa0260730:CDS |
| CTGGAAATCGGTTCATGGCA+AGG | 0.530924 | 2_2:+58524361 | Msa0260730:CDS |
| CCGTCAGCATGGAAATCACT+GGG | 0.532917 | 2_2:-58523699 | None:intergenic |
| CCTCATCATTCTATTGAAGC+AGG | 0.534186 | 2_2:+58522627 | Msa0260730:CDS |
| TCCACTCTTCTACCTGGGAC+AGG | 0.535232 | 2_2:-58523100 | None:intergenic |
| CTCATATCCTTCAGTGATAG+GGG | 0.537378 | 2_2:-58522601 | None:intergenic |
| CTCCATATCATCTAGCCCAT+TGG | 0.538054 | 2_2:-58521737 | None:intergenic |
| GGAAATATATTAGAAATTGG+TGG | 0.539622 | 2_2:+58520105 | Msa0260730:CDS |
| GGGGAGGTATGCTGTAACAC+AGG | 0.541058 | 2_2:-58524507 | None:intergenic |
| GTTCATCAAGAATGTTTGAC+CGG | 0.541717 | 2_2:-58524608 | None:intergenic |
| GGTCAGGCATATGCTTATGA+TGG | 0.544539 | 2_2:+58522546 | Msa0260730:intron |
| TCATGGAAGTAGCTCTGGAT+AGG | 0.545515 | 2_2:+58521457 | Msa0260730:CDS |
| CTATCCGATCTTGTTAAAGA+GGG | 0.546821 | 2_2:-58521018 | None:intergenic |
| ATAACATGCATCGGTGGCGG+TGG | 0.547008 | 2_2:-58524531 | None:intergenic |
| AGGAACAAGGTCAGTTCTGT+AGG | 0.547778 | 2_2:-58521842 | None:intergenic |
| TTCATGTACTTGCCTTACAA+TGG | 0.548828 | 2_2:-58524418 | None:intergenic |
| CGTCTCTGAACTCCTGTCCC+AGG | 0.555025 | 2_2:+58523088 | Msa0260730:CDS |
| CCACAACATGAAACTTCTCC+TGG | 0.556542 | 2_2:+58524573 | Msa0260730:CDS |
| ACCGAATGTTGAAACATATG+AGG | 0.557959 | 2_2:+58524629 | Msa0260730:CDS |
| AGGCATATGCTTATGATGGT+TGG | 0.563283 | 2_2:+58522550 | Msa0260730:intron |
| ACCATATCGAATGAACAGTC+AGG | 0.564118 | 2_2:-58520144 | None:intergenic |
| TTCATAACATGCATCGGTGG+CGG | 0.564718 | 2_2:-58524534 | None:intergenic |
| TTCATGATGCTGAACCATCA+CGG | 0.565941 | 2_2:-58524463 | None:intergenic |
| TTAGAAAGCAGTTCAGAACA+AGG | 0.566415 | 2_2:+58524136 | Msa0260730:CDS |
| TTAGGCAAACACATGGATCT+CGG | 0.568800 | 2_2:+58524103 | Msa0260730:CDS |
| GTCGTCTGTTGTTCCAATCG+TGG | 0.572553 | 2_2:-58523665 | None:intergenic |
| TTCAGATTCTATGATTGCTG+AGG | 0.572860 | 2_2:+58521410 | Msa0260730:intron |
| TTTGCAGGTGGTATCAGGAA+AGG | 0.573077 | 2_2:-58523878 | None:intergenic |
| ATTTCCAAGAAGACAGGCAT+AGG | 0.573882 | 2_2:-58520088 | None:intergenic |
| ACACCCCTCTTTAACAAGAT+CGG | 0.574783 | 2_2:+58521014 | Msa0260730:CDS |
| GCCGTGGTTAATCCTCCTCA+AGG | 0.581788 | 2_2:+58524736 | Msa0260730:three_prime_UTR |
| AGTCTCAGCTAGCTGCAGCT+AGG | 0.582532 | 2_2:+58524310 | Msa0260730:intron |
| ATTGATTAACCCCGTCAGCA+TGG | 0.585643 | 2_2:-58523710 | None:intergenic |
| AAATTCCTCTTGTGATGATG+TGG | 0.585738 | 2_2:-58524683 | None:intergenic |
| CCAATTCTTACCTTTGCAGG+TGG | 0.586562 | 2_2:-58523890 | None:intergenic |
| ATGTTTAATCACCCTTGAGG+AGG | 0.592113 | 2_2:-58524748 | None:intergenic |
| CCAAGAAGACAGGCATAGGT+AGG | 0.593630 | 2_2:-58520084 | None:intergenic |
| TCAACATTCATAACATGCAT+CGG | 0.596521 | 2_2:-58524540 | None:intergenic |
| GACTGGCGATGATGAAGTCA+TGG | 0.597530 | 2_2:+58521440 | Msa0260730:CDS |
| CTATTGAAGCCATTCAACAA+AGG | 0.600718 | 2_2:+58523054 | Msa0260730:CDS |
| AGGAAAAGAAACATTCCTAA+GGG | 0.602640 | 2_2:-58524780 | None:intergenic |
| AAGGATTGACACTCCCGTGA+TGG | 0.603506 | 2_2:+58524449 | Msa0260730:CDS |
| AATGGTCATCTTTGTCTAAG+CGG | 0.607096 | 2_2:+58521905 | Msa0260730:CDS |
| TCCATAAACTCAAATAGCCA+AGG | 0.607976 | 2_2:+58524708 | Msa0260730:three_prime_UTR |
| ATTGTAAGGCAAGTACATGA+AGG | 0.611738 | 2_2:+58524420 | Msa0260730:CDS |
| TTGATGTTTAATCACCCTTG+AGG | 0.615184 | 2_2:-58524751 | None:intergenic |
| GGAGAAACCCCTATCACTGA+AGG | 0.615278 | 2_2:+58522594 | Msa0260730:CDS |
| TTTCCTGATACCACCTGCAA+AGG | 0.616944 | 2_2:+58523880 | Msa0260730:CDS |
| CAAGGCCACATCATCACAAG+AGG | 0.619120 | 2_2:+58524678 | Msa0260730:three_prime_UTR |
| ACAGTCATAATACTTTCAAG+TGG | 0.622898 | 2_2:-58521814 | None:intergenic |
| GATGGTATACCAGTTGCAGA+AGG | 0.623506 | 2_2:-58521521 | None:intergenic |
| AAACTGTAGTAACAGCTGCA+AGG | 0.623601 | 2_2:-58520981 | None:intergenic |
| CAGTGATTTCCATGCTGACG+GGG | 0.633268 | 2_2:+58523701 | Msa0260730:CDS |
| TGCAGGTGGTATCAGGAAAG+GGG | 0.633371 | 2_2:-58523876 | None:intergenic |
| ATTGCTGAGGATGATATGAC+TGG | 0.639987 | 2_2:+58521423 | Msa0260730:CDS |
| CCTGCTTCAATAGAATGATG+AGG | 0.646238 | 2_2:-58522627 | None:intergenic |
| AAGTACATGAAGGATCAGAA+AGG | 0.651645 | 2_2:+58524430 | Msa0260730:CDS |
| GTCAGCATGGAAATCACTGG+GGG | 0.654099 | 2_2:-58523697 | None:intergenic |
| CCGTGGTTAATCCTCCTCAA+GGG | 0.654378 | 2_2:+58524737 | Msa0260730:three_prime_UTR |
| ATTTCCAAAGTATAGGAACA+AGG | 0.657837 | 2_2:-58521855 | None:intergenic |
| ACATTCATAACATGCATCGG+TGG | 0.662820 | 2_2:-58524537 | None:intergenic |
| TATCCGATCTTGTTAAAGAG+GGG | 0.669572 | 2_2:-58521017 | None:intergenic |
| GCTGCAGCTAGGCAAAGACA+TGG | 0.672227 | 2_2:+58524321 | Msa0260730:CDS |
| AATAGCCAAGGAGACAGCCG+TGG | 0.685647 | 2_2:+58524720 | Msa0260730:three_prime_UTR |
| CAATGGGCTAGATGATATGG+AGG | 0.691406 | 2_2:+58521738 | Msa0260730:CDS |
| GCTGCAGTTAGGCAAACACA+TGG | 0.691410 | 2_2:+58524096 | Msa0260730:CDS |
| GCTGCATTTAGGCAAACACA+TGG | 0.695976 | 2_2:+58524060 | Msa0260730:CDS |
| CCCTTGAGGAGGATTAACCA+CGG | 0.721249 | 2_2:-58524737 | None:intergenic |
| CGTCAGCATGGAAATCACTG+GGG | 0.751952 | 2_2:-58523698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAAATATAGAAATTAA+AGG | + | chr2_2:58520319-58520338 | Msa0260730:intron | 10.0% |
| !! | TATTAAAAAGATTATACATA+AGG | - | chr2_2:58520748-58520767 | None:intergenic | 10.0% |
| !!! | TAATTTTTATGAATAAAAGA+AGG | + | chr2_2:58521144-58521163 | Msa0260730:intron | 10.0% |
| !!! | TTAAAATTAATGGTATTTTA+TGG | - | chr2_2:58521203-58521222 | None:intergenic | 10.0% |
| !!! | ACCATTTTTTTTTTTAAAAT+TGG | + | chr2_2:58521589-58521608 | Msa0260730:intron | 10.0% |
| !!! | AGTTTATTTTTATTAAAACT+GGG | + | chr2_2:58522847-58522866 | Msa0260730:intron | 10.0% |
| !!! | TTGATTTAAAATAAATTGAA+AGG | + | chr2_2:58523943-58523962 | Msa0260730:intron | 10.0% |
| !!! | TATTTTTTTTTTTATTTGCG+AGG | + | chr2_2:58520827-58520846 | Msa0260730:intron | 15.0% |
| !!! | ATTTTTTTTTTTATTTGCGA+GGG | + | chr2_2:58520828-58520847 | Msa0260730:intron | 15.0% |
| !!! | TTTATCAACTATGATAATTT+TGG | - | chr2_2:58521312-58521331 | None:intergenic | 15.0% |
| !!! | GCCAATTTTAAAAAAAAAAA+TGG | - | chr2_2:58521593-58521612 | None:intergenic | 15.0% |
| !!! | AATTTTTTTGCTTATAAACT+GGG | - | chr2_2:58522028-58522047 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTGCTTATAAAC+TGG | - | chr2_2:58522029-58522048 | None:intergenic | 15.0% |
| !! | AATATTAAATAAGAATTGAC+TGG | - | chr2_2:58522072-58522091 | None:intergenic | 15.0% |
| !! | TTAACATTAAGTATCTTTAA+GGG | - | chr2_2:58522134-58522153 | None:intergenic | 15.0% |
| !! | TTTAACATTAAGTATCTTTA+AGG | - | chr2_2:58522135-58522154 | None:intergenic | 15.0% |
| !!! | TTTTTGGAGAAATATTAAAT+AGG | + | chr2_2:58522365-58522384 | Msa0260730:intron | 15.0% |
| !! | TTAGATTTAAAGAAAATTGA+AGG | - | chr2_2:58522476-58522495 | None:intergenic | 15.0% |
| !!! | GAGTTTATTTTTATTAAAAC+TGG | + | chr2_2:58522846-58522865 | Msa0260730:intron | 15.0% |
| !!! | GTTTATTTTTATTAAAACTG+GGG | + | chr2_2:58522848-58522867 | Msa0260730:intron | 15.0% |
| !!! | TTTATTTTTATTAAAACTGG+GGG | + | chr2_2:58522849-58522868 | Msa0260730:intron | 15.0% |
| !! | GTAAGCAATATTATATTTAT+GGG | - | chr2_2:58522881-58522900 | None:intergenic | 15.0% |
| !! | TGTAAGCAATATTATATTTA+TGG | - | chr2_2:58522882-58522901 | None:intergenic | 15.0% |
| !! | AAAAAAAATGTAGTAGATAT+GGG | - | chr2_2:58523340-58523359 | None:intergenic | 15.0% |
| !! | TAAAAAAAATGTAGTAGATA+TGG | - | chr2_2:58523341-58523360 | None:intergenic | 15.0% |
| !! | GAAAAAAAAGAAAACAATTA+GGG | - | chr2_2:58523373-58523392 | None:intergenic | 15.0% |
| !!! | ATTTAATAAGAGATATTTTG+AGG | + | chr2_2:58523473-58523492 | Msa0260730:intron | 15.0% |
| !! | ATAAACAATTTATATGCATA+TGG | - | chr2_2:58523600-58523619 | None:intergenic | 15.0% |
| !! | AGAAAATAAAAAAGTAAGTT+AGG | - | chr2_2:58523635-58523654 | None:intergenic | 15.0% |
| !! | TTGATAAGATAATCTTAATT+TGG | + | chr2_2:58523785-58523804 | Msa0260730:intron | 15.0% |
| !! | CTTGGAAATATATTAGAAAT+TGG | + | chr2_2:58520102-58520121 | Msa0260730:CDS | 20.0% |
| !!! | CATAGAGTATTGATAAAAAA+TGG | - | chr2_2:58520193-58520212 | None:intergenic | 20.0% |
| !! | ACTTAATAAGTGTGTTAATT+CGG | - | chr2_2:58520639-58520658 | None:intergenic | 20.0% |
| !! | AAATAACTTTCAATGTCATA+CGG | - | chr2_2:58520812-58520831 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTATTTGCGAG+GGG | + | chr2_2:58520829-58520848 | Msa0260730:intron | 20.0% |
| !!! | TCAACTTTAAAATATACACA+CGG | - | chr2_2:58520932-58520951 | None:intergenic | 20.0% |
| !!! | ATTTGCATTTATTTCTATTC+AGG | + | chr2_2:58520951-58520970 | Msa0260730:intron | 20.0% |
| !!! | ATACCATTAATTTTAATCCT+TGG | + | chr2_2:58521207-58521226 | Msa0260730:intron | 20.0% |
| !! | AATCCAAGGATTAAAATTAA+TGG | - | chr2_2:58521213-58521232 | None:intergenic | 20.0% |
| !! | TTCATAAATTTCCAAAGTAT+AGG | - | chr2_2:58521865-58521884 | None:intergenic | 20.0% |
| !!! | TACTTTGGAAATTTATGAAA+CGG | + | chr2_2:58521866-58521885 | Msa0260730:CDS | 20.0% |
| !! | TAAAATTTCTTACTTGTAGA+CGG | - | chr2_2:58521989-58522008 | None:intergenic | 20.0% |
| !! | TTGATGAATAATTAATGTAG+AGG | + | chr2_2:58522231-58522250 | Msa0260730:intron | 20.0% |
| !!! | TAGTGTGAAATAATTTTGTT+TGG | - | chr2_2:58522257-58522276 | None:intergenic | 20.0% |
| !! | AAACAAAATTATTTCACACT+AGG | + | chr2_2:58522256-58522275 | Msa0260730:intron | 20.0% |
| !! | AATATTAAATAGGTCAAAAG+TGG | + | chr2_2:58522375-58522394 | Msa0260730:intron | 20.0% |
| !! | ATATTAAATAGGTCAAAAGT+GGG | + | chr2_2:58522376-58522395 | Msa0260730:intron | 20.0% |
| !! | TAATTAATTGTTCACTGAAA+TGG | + | chr2_2:58522733-58522752 | Msa0260730:intron | 20.0% |
| !! | AATTAATTGTTCACTGAAAT+GGG | + | chr2_2:58522734-58522753 | Msa0260730:intron | 20.0% |
| !!! | TTATTTTTATTAAAACTGGG+GGG | + | chr2_2:58522850-58522869 | Msa0260730:intron | 20.0% |
| !! | CATTTATATGAAGCAATATA+AGG | - | chr2_2:58522907-58522926 | None:intergenic | 20.0% |
| !!! | CATATTTTGTCTATCTTTAA+AGG | + | chr2_2:58523195-58523214 | Msa0260730:intron | 20.0% |
| !! | AAAAAAATGTAGTAGATATG+GGG | - | chr2_2:58523339-58523358 | None:intergenic | 20.0% |
| !! | CGAAAAAAAAGAAAACAATT+AGG | - | chr2_2:58523374-58523393 | None:intergenic | 20.0% |
| !! | AATTTATATGCATATGGTTA+TGG | - | chr2_2:58523594-58523613 | None:intergenic | 20.0% |
| !!! | TAATCAATTTTTCATATCTC+AGG | + | chr2_2:58523725-58523744 | Msa0260730:CDS | 20.0% |
| !!! | TTATATAATCTTTTCTCTAC+AGG | + | chr2_2:58523811-58523830 | Msa0260730:intron | 20.0% |
| !! | AGCAAATAAAATTGTAAAGA+AGG | + | chr2_2:58523853-58523872 | Msa0260730:CDS | 20.0% |
| ! | AATTCATCTGATATATCCTT+AGG | - | chr2_2:58520063-58520082 | None:intergenic | 25.0% |
| ! | TAATATATTTCCAAGAAGAC+AGG | - | chr2_2:58520097-58520116 | None:intergenic | 25.0% |
| ! | GGAAATATATTAGAAATTGG+TGG | + | chr2_2:58520105-58520124 | Msa0260730:CDS | 25.0% |
| ! | AATCCAAGATAAGTCATAAA+GGG | - | chr2_2:58520237-58520256 | None:intergenic | 25.0% |
| ! | TAATCCAAGATAAGTCATAA+AGG | - | chr2_2:58520238-58520257 | None:intergenic | 25.0% |
| !!! | ATCCCTAAATTCTAGTTTTA+CGG | + | chr2_2:58520550-58520569 | Msa0260730:intron | 25.0% |
| ! | TGTTGAGAATACAAATAAGT+TGG | + | chr2_2:58520583-58520602 | Msa0260730:intron | 25.0% |
| !!! | TTTTTTTTTTATTTGCGAGG+GGG | + | chr2_2:58520830-58520849 | Msa0260730:intron | 25.0% |
| !! | TGTTTTCTAATCACATAGTT+TGG | + | chr2_2:58521052-58521071 | Msa0260730:intron | 25.0% |
| ! | TGTAAGAAGTTAGAAAGAAA+GGG | - | chr2_2:58521094-58521113 | None:intergenic | 25.0% |
| ! | ATGTAAGAAGTTAGAAAGAA+AGG | - | chr2_2:58521095-58521114 | None:intergenic | 25.0% |
| ! | TTATGAATAAAAGAAGGCTA+AGG | + | chr2_2:58521150-58521169 | Msa0260730:intron | 25.0% |
| ! | AATGAGAACAAATAAATCCA+AGG | - | chr2_2:58521227-58521246 | None:intergenic | 25.0% |
| !! | ATGGTAAAGCAAAATTTTGA+TGG | - | chr2_2:58521574-58521593 | None:intergenic | 25.0% |
| !!! | ATGACCATTTTTTATTCTCT+TGG | - | chr2_2:58521894-58521913 | None:intergenic | 25.0% |
| ! | AAAATTTCTTACTTGTAGAC+GGG | - | chr2_2:58521988-58522007 | None:intergenic | 25.0% |
| !! | AACTTTTCTTTAATACTGCA+AGG | + | chr2_2:58522162-58522181 | Msa0260730:intron | 25.0% |
| !! | ACTTTTCTTTAATACTGCAA+GGG | + | chr2_2:58522163-58522182 | Msa0260730:intron | 25.0% |
| !! | AGTATATTCTAATCCTTTTC+TGG | + | chr2_2:58522525-58522544 | Msa0260730:intron | 25.0% |
| !! | TAATGAGAAATTTTATGAGC+AGG | + | chr2_2:58522573-58522592 | Msa0260730:CDS | 25.0% |
| !! | TTTTATATTTCCTCTCCATT+GGG | + | chr2_2:58523149-58523168 | Msa0260730:intron | 25.0% |
| !!! | TCTTGGTCTTTTCTTATTTA+TGG | + | chr2_2:58523238-58523257 | Msa0260730:intron | 25.0% |
| ! | GTAAAATGCCATAAATAAGA+GGG | - | chr2_2:58523303-58523322 | None:intergenic | 25.0% |
| ! | TATTGGATGTAAATGCATAT+GGG | - | chr2_2:58523564-58523583 | None:intergenic | 25.0% |
| ! | TTATTGGATGTAAATGCATA+TGG | - | chr2_2:58523565-58523584 | None:intergenic | 25.0% |
| !! | TTATGATTTTTGTCCATTTC+AGG | - | chr2_2:58524658-58524677 | None:intergenic | 25.0% |
| ! | AATGGACAAAAATCATAACA+AGG | + | chr2_2:58524660-58524679 | Msa0260730:three_prime_UTR | 25.0% |
| ! | ACAAAAGAAAAGCAAAATCA+AGG | - | chr2_2:58524803-58524822 | None:intergenic | 25.0% |
| GATAAAAAATGGCACAATGT+AGG | - | chr2_2:58520182-58520201 | None:intergenic | 30.0% | |
| CTTATCTTGGATTACGTTAA+AGG | + | chr2_2:58520244-58520263 | Msa0260730:intron | 30.0% | |
| TAAAGGATGATTTCTTGCTT+AGG | + | chr2_2:58520336-58520355 | Msa0260730:intron | 30.0% | |
| ! | AACAGGTTGAAACAGATTTA+TGG | + | chr2_2:58520374-58520393 | Msa0260730:intron | 30.0% |
| ! | ACAGGTTGAAACAGATTTAT+GGG | + | chr2_2:58520375-58520394 | Msa0260730:intron | 30.0% |
| !! | GGCATTTTAAAGAGTTTATC+TGG | + | chr2_2:58520397-58520416 | Msa0260730:intron | 30.0% |
| GTAAAACTAGAATTTAGGGA+TGG | - | chr2_2:58520551-58520570 | None:intergenic | 30.0% | |
| CACCGTAAAACTAGAATTTA+GGG | - | chr2_2:58520555-58520574 | None:intergenic | 30.0% | |
| TCACCGTAAAACTAGAATTT+AGG | - | chr2_2:58520556-58520575 | None:intergenic | 30.0% | |
| ! | TCTGCATACTAAACAAGTTT+TGG | + | chr2_2:58520709-58520728 | Msa0260730:intron | 30.0% |
| CAAATATGAACCACCATTAT+AGG | + | chr2_2:58521173-58521192 | Msa0260730:intron | 30.0% | |
| ! | ATTTTATGGACCACCTATAA+TGG | - | chr2_2:58521189-58521208 | None:intergenic | 30.0% |
| !!! | TGTACCATTTGTTTTTAAGC+TGG | + | chr2_2:58521376-58521395 | Msa0260730:intron | 30.0% |
| TACAAAAGTCATTTGCATGA+TGG | - | chr2_2:58521542-58521561 | None:intergenic | 30.0% | |
| ACAGTCATAATACTTTCAAG+TGG | - | chr2_2:58521817-58521836 | None:intergenic | 30.0% | |
| ATTTCCAAAGTATAGGAACA+AGG | - | chr2_2:58521858-58521877 | None:intergenic | 30.0% | |
| ! | TTTTTGCTTATAAACTGGGA+GGG | - | chr2_2:58522024-58522043 | None:intergenic | 30.0% |
| !!! | TTTTTTGCTTATAAACTGGG+AGG | - | chr2_2:58522025-58522044 | None:intergenic | 30.0% |
| ! | AGTATCTTTAAGGGTAGTTT+CGG | - | chr2_2:58522125-58522144 | None:intergenic | 30.0% |
| ATCATTATTAGCACTATCCT+TGG | - | chr2_2:58522196-58522215 | None:intergenic | 30.0% | |
| CTAATAATGATCACATGCAT+CGG | + | chr2_2:58522205-58522224 | Msa0260730:intron | 30.0% | |
| ! | TTTGGAACTGCATAAACATA+TGG | + | chr2_2:58522285-58522304 | Msa0260730:intron | 30.0% |
| TAAACATATGGATGATACAC+TGG | + | chr2_2:58522297-58522316 | Msa0260730:intron | 30.0% | |
| TATCTCCAATAAGTAGCATA+AGG | + | chr2_2:58522339-58522358 | Msa0260730:intron | 30.0% | |
| ATCTCCAATAAGTAGCATAA+GGG | + | chr2_2:58522340-58522359 | Msa0260730:intron | 30.0% | |
| ! | AATACCCTTATGCTACTTAT+TGG | - | chr2_2:58522347-58522366 | None:intergenic | 30.0% |
| !!! | AAGTAGCATAAGGGTATTTT+TGG | + | chr2_2:58522349-58522368 | Msa0260730:intron | 30.0% |
| ! | GTCTCTTTTGCTGATAATTT+GGG | + | chr2_2:58522398-58522417 | Msa0260730:intron | 30.0% |
| AAAGAAAATTGAAGGACCAT+GGG | - | chr2_2:58522468-58522487 | None:intergenic | 30.0% | |
| TAAAGAAAATTGAAGGACCA+TGG | - | chr2_2:58522469-58522488 | None:intergenic | 30.0% | |
| CTTAAAGTGAAAGGAAGAAA+AGG | - | chr2_2:58522761-58522780 | None:intergenic | 30.0% | |
| ! | CTTTTCTTCCTTTCACTTTA+AGG | + | chr2_2:58522759-58522778 | Msa0260730:intron | 30.0% |
| AAGATTTGACACAACTTATC+TGG | - | chr2_2:58522790-58522809 | None:intergenic | 30.0% | |
| AAATAAACTCTCCAGTTCTT+TGG | - | chr2_2:58522836-58522855 | None:intergenic | 30.0% | |
| TCTAACTGAATTAGCAAATG+AGG | - | chr2_2:58523000-58523019 | None:intergenic | 30.0% | |
| TATTGAAGCCATTCAACAAA+GGG | + | chr2_2:58523055-58523074 | Msa0260730:CDS | 30.0% | |
| ! | GTTTTATATTTCCTCTCCAT+TGG | + | chr2_2:58523148-58523167 | Msa0260730:intron | 30.0% |
| !! | TATCTTTAAAGGCATCTCTT+GGG | + | chr2_2:58523206-58523225 | Msa0260730:intron | 30.0% |
| GGTAAAATGCCATAAATAAG+AGG | - | chr2_2:58523304-58523323 | None:intergenic | 30.0% | |
| AAGAGTAAAATCGCAATTAC+AGG | - | chr2_2:58523426-58523445 | None:intergenic | 30.0% | |
| ATGGTTATGGTTATGGTTAT+TGG | - | chr2_2:58523581-58523600 | None:intergenic | 30.0% | |
| TATGCATATGGTTATGGTTA+TGG | - | chr2_2:58523588-58523607 | None:intergenic | 30.0% | |
| TTCACCTAATAACGATAGTA+GGG | - | chr2_2:58523761-58523780 | None:intergenic | 30.0% | |
| TTTCACCTAATAACGATAGT+AGG | - | chr2_2:58523762-58523781 | None:intergenic | 30.0% | |
| ! | TCTGAACTGCTTTCTAAAAA+TGG | - | chr2_2:58524133-58524152 | None:intergenic | 30.0% |
| GGAAGATGCTTATAATTCAA+AGG | + | chr2_2:58524173-58524192 | Msa0260730:CDS | 30.0% | |
| AGACTGTATTTACTGGAAAT+CGG | + | chr2_2:58524349-58524368 | Msa0260730:CDS | 30.0% | |
| TCAACATTCATAACATGCAT+CGG | - | chr2_2:58524543-58524562 | None:intergenic | 30.0% | |
| TCCTCATATGTTTCAACATT+CGG | - | chr2_2:58524633-58524652 | None:intergenic | 30.0% | |
| ! | AAACATCAACATTTTCCCTT+AGG | + | chr2_2:58524765-58524784 | Msa0260730:three_prime_UTR | 30.0% |
| AGGAAAAGAAACATTCCTAA+GGG | - | chr2_2:58524783-58524802 | None:intergenic | 30.0% | |
| AAGGAAAAGAAACATTCCTA+AGG | - | chr2_2:58524784-58524803 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTGTGCTTGAGTT+TGG | + | chr2_2:58524812-58524831 | Msa0260730:three_prime_UTR | 30.0% |
| CCATTTGATGAATGTGATGT+TGG | - | chr2_2:58520008-58520027 | None:intergenic | 35.0% | |
| CCAACATCACATTCATCAAA+TGG | + | chr2_2:58520005-58520024 | Msa0260730:CDS | 35.0% | |
| GGTAGAAAACTGATCAGATT+TGG | - | chr2_2:58520042-58520061 | None:intergenic | 35.0% | |
| ! | TCTGATCAGTTTTCTACCTA+AGG | + | chr2_2:58520044-58520063 | Msa0260730:CDS | 35.0% |
| TCTCCCTTTATGACTTATCT+TGG | + | chr2_2:58520231-58520250 | Msa0260730:intron | 35.0% | |
| GATGATTTCTTGCTTAGGAA+AGG | + | chr2_2:58520341-58520360 | Msa0260730:intron | 35.0% | |
| ! | CAGGTTGAAACAGATTTATG+GGG | + | chr2_2:58520376-58520395 | Msa0260730:intron | 35.0% |
| TGTTTATCTAAGCACTCCTT+TGG | + | chr2_2:58520659-58520678 | Msa0260730:intron | 35.0% | |
| ! | AGCTGTTACTACAGTTTTAC+TGG | + | chr2_2:58520987-58521006 | Msa0260730:CDS | 35.0% |
| ! | TGTTACTACAGTTTTACTGG+AGG | + | chr2_2:58520990-58521009 | Msa0260730:CDS | 35.0% |
| TATCCGATCTTGTTAAAGAG+GGG | - | chr2_2:58521020-58521039 | None:intergenic | 35.0% | |
| CTATCCGATCTTGTTAAAGA+GGG | - | chr2_2:58521021-58521040 | None:intergenic | 35.0% | |
| ACTATCCGATCTTGTTAAAG+AGG | - | chr2_2:58521022-58521041 | None:intergenic | 35.0% | |
| ATATGAACCACCATTATAGG+TGG | + | chr2_2:58521176-58521195 | Msa0260730:intron | 35.0% | |
| !! | CTATAGTTAATTTGCGTGCA+AGG | - | chr2_2:58521260-58521279 | None:intergenic | 35.0% |
| CTGACCAGCTTAAAAACAAA+TGG | - | chr2_2:58521383-58521402 | None:intergenic | 35.0% | |
| TTCAGATTCTATGATTGCTG+AGG | + | chr2_2:58521410-58521429 | Msa0260730:intron | 35.0% | |
| GGTGCCAAGAGAATAAAAAA+TGG | + | chr2_2:58521887-58521906 | Msa0260730:CDS | 35.0% | |
| AATGGTCATCTTTGTCTAAG+CGG | + | chr2_2:58521905-58521924 | Msa0260730:CDS | 35.0% | |
| ! | TTTCACACTAGGCATGTTTT+TGG | + | chr2_2:58522267-58522286 | Msa0260730:intron | 35.0% |
| ACTGGAAATGCATAAACATG+TGG | + | chr2_2:58522315-58522334 | Msa0260730:intron | 35.0% | |
| CTGGAAATGCATAAACATGT+GGG | + | chr2_2:58522316-58522335 | Msa0260730:intron | 35.0% | |
| ! | GGTCTCTTTTGCTGATAATT+TGG | + | chr2_2:58522397-58522416 | Msa0260730:intron | 35.0% |
| ! | CTTTTGCTGATAATTTGGGA+CGG | + | chr2_2:58522402-58522421 | Msa0260730:intron | 35.0% |
| !! | ATTCTAATCCTTTTCTGGTC+AGG | + | chr2_2:58522530-58522549 | Msa0260730:intron | 35.0% |
| !! | GTTCTGAGATTGAAATCGTT+AGG | + | chr2_2:58522698-58522717 | Msa0260730:intron | 35.0% |
| TGGATCTTCCTTAAAGTGAA+AGG | - | chr2_2:58522770-58522789 | None:intergenic | 35.0% | |
| CAGTTAGATCTATTCCAGTT+AGG | + | chr2_2:58523012-58523031 | Msa0260730:CDS | 35.0% | |
| CTATTGAAGCCATTCAACAA+AGG | + | chr2_2:58523054-58523073 | Msa0260730:CDS | 35.0% | |
| TATGCTAACCCTTTGTTGAA+TGG | - | chr2_2:58523066-58523085 | None:intergenic | 35.0% | |
| !! | CTATCTTTAAAGGCATCTCT+TGG | + | chr2_2:58523205-58523224 | Msa0260730:intron | 35.0% |
| !! | ATCTTTAAAGGCATCTCTTG+GGG | + | chr2_2:58523207-58523226 | Msa0260730:intron | 35.0% |
| CAGTGCAATGCCATAATTAT+CGG | + | chr2_2:58523267-58523286 | Msa0260730:intron | 35.0% | |
| GTAAAATCGCAATTACAGGA+AGG | - | chr2_2:58523422-58523441 | None:intergenic | 35.0% | |
| TTAGAAAGCAGTTCAGAACA+AGG | + | chr2_2:58524136-58524155 | Msa0260730:CDS | 35.0% | |
| AACAAGGCGTGATCATATTT+CGG | + | chr2_2:58524152-58524171 | Msa0260730:CDS | 35.0% | |
| ! | ATTTACTGGAAATCGGTTCA+TGG | + | chr2_2:58524356-58524375 | Msa0260730:CDS | 35.0% |
| ! | GGCAAGGTATGATCATATTT+TGG | + | chr2_2:58524377-58524396 | Msa0260730:CDS | 35.0% |
| TTCATGTACTTGCCTTACAA+TGG | - | chr2_2:58524421-58524440 | None:intergenic | 35.0% | |
| ATTGTAAGGCAAGTACATGA+AGG | + | chr2_2:58524420-58524439 | Msa0260730:CDS | 35.0% | |
| AAGTACATGAAGGATCAGAA+AGG | + | chr2_2:58524430-58524449 | Msa0260730:CDS | 35.0% | |
| GTTCATCAAGAATGTTTGAC+CGG | - | chr2_2:58524611-58524630 | None:intergenic | 35.0% | |
| ACCGAATGTTGAAACATATG+AGG | + | chr2_2:58524629-58524648 | Msa0260730:CDS | 35.0% | |
| ! | AAATTCCTCTTGTGATGATG+TGG | - | chr2_2:58524686-58524705 | None:intergenic | 35.0% |
| TCCATAAACTCAAATAGCCA+AGG | + | chr2_2:58524708-58524727 | Msa0260730:three_prime_UTR | 35.0% | |
| ! | TCCTTGGCTATTTGAGTTTA+TGG | - | chr2_2:58524712-58524731 | None:intergenic | 35.0% |
| TTGATGTTTAATCACCCTTG+AGG | - | chr2_2:58524754-58524773 | None:intergenic | 35.0% | |
| !!! | TTGAGTTTGGCCTTTTTTGT+GGG | + | chr2_2:58524825-58524844 | Msa0260730:three_prime_UTR | 35.0% |
| ATTTCCAAGAAGACAGGCAT+AGG | - | chr2_2:58520091-58520110 | None:intergenic | 40.0% | |
| ACCTGACTGTTCATTCGATA+TGG | + | chr2_2:58520143-58520162 | Msa0260730:CDS | 40.0% | |
| ACCATATCGAATGAACAGTC+AGG | - | chr2_2:58520147-58520166 | None:intergenic | 40.0% | |
| TACGTTAAAGGCTGTTGTTG+TGG | + | chr2_2:58520256-58520275 | Msa0260730:intron | 40.0% | |
| GATTTCTTGCTTAGGAAAGG+AGG | + | chr2_2:58520344-58520363 | Msa0260730:intron | 40.0% | |
| GTGCTTAAGTCATGAGATGA+GGG | - | chr2_2:58520428-58520447 | None:intergenic | 40.0% | |
| AGTGCTTAAGTCATGAGATG+AGG | - | chr2_2:58520429-58520448 | None:intergenic | 40.0% | |
| !! | TAAGCGCTTTGAGAAGCTTA+TGG | + | chr2_2:58520479-58520498 | Msa0260730:intron | 40.0% |
| ! | TAAGTTGGCAACATAAGCTC+TGG | + | chr2_2:58520598-58520617 | Msa0260730:intron | 40.0% |
| TTATCTAAGCACTCCTTTGG+AGG | + | chr2_2:58520662-58520681 | Msa0260730:intron | 40.0% | |
| TTTAGTATGCAGAGCCTTAG+AGG | - | chr2_2:58520702-58520721 | None:intergenic | 40.0% | |
| !!! | TTTTTTTATTTGCGAGGGGG+TGG | + | chr2_2:58520833-58520852 | Msa0260730:intron | 40.0% |
| !!! | TTTTTTATTTGCGAGGGGGT+GGG | + | chr2_2:58520834-58520853 | Msa0260730:intron | 40.0% |
| AAACTGTAGTAACAGCTGCA+AGG | - | chr2_2:58520984-58521003 | None:intergenic | 40.0% | |
| ACACCCCTCTTTAACAAGAT+CGG | + | chr2_2:58521014-58521033 | Msa0260730:CDS | 40.0% | |
| TTATGGACCACCTATAATGG+TGG | - | chr2_2:58521186-58521205 | None:intergenic | 40.0% | |
| ATTGCTGAGGATGATATGAC+TGG | + | chr2_2:58521423-58521442 | Msa0260730:CDS | 40.0% | |
| !! | AGTAGCTCTGGATAGGAAAT+TGG | + | chr2_2:58521464-58521483 | Msa0260730:CDS | 40.0% |
| TCACTTTGTGGGAAAAAGCT+CGG | + | chr2_2:58521617-58521636 | Msa0260730:intron | 40.0% | |
| AGAGATATTTCAGCTGCCAA+TGG | + | chr2_2:58521721-58521740 | Msa0260730:CDS | 40.0% | |
| GAGATATTTCAGCTGCCAAT+GGG | + | chr2_2:58521722-58521741 | Msa0260730:CDS | 40.0% | |
| CTGACCTTGTTCCTATACTT+TGG | + | chr2_2:58521851-58521870 | Msa0260730:CDS | 40.0% | |
| TAAGGGTAGTTTCGGAAACA+TGG | - | chr2_2:58522117-58522136 | None:intergenic | 40.0% | |
| !!! | ACTGCAAGGGTTTTATTCCA+AGG | + | chr2_2:58522176-58522195 | Msa0260730:intron | 40.0% |
| AGGCATATGCTTATGATGGT+TGG | + | chr2_2:58522550-58522569 | Msa0260730:intron | 40.0% | |
| CTCATATCCTTCAGTGATAG+GGG | - | chr2_2:58522604-58522623 | None:intergenic | 40.0% | |
| GCTCATATCCTTCAGTGATA+GGG | - | chr2_2:58522605-58522624 | None:intergenic | 40.0% | |
| TGCTCATATCCTTCAGTGAT+AGG | - | chr2_2:58522606-58522625 | None:intergenic | 40.0% | |
| CCTGCTTCAATAGAATGATG+AGG | - | chr2_2:58522630-58522649 | None:intergenic | 40.0% | |
| CCTCATCATTCTATTGAAGC+AGG | + | chr2_2:58522627-58522646 | Msa0260730:CDS | 40.0% | |
| ! | CAGTCAGTTTACTCTTTTGC+AGG | + | chr2_2:58522953-58522972 | Msa0260730:intron | 40.0% |
| TTTGTACTGCTTGTCCTAAC+TGG | - | chr2_2:58523029-58523048 | None:intergenic | 40.0% | |
| TTGATTCCACTCTTCTACCT+GGG | - | chr2_2:58523108-58523127 | None:intergenic | 40.0% | |
| ! | ATTGATTCCACTCTTCTACC+TGG | - | chr2_2:58523109-58523128 | None:intergenic | 40.0% |
| ATGCCATAATTATCGGAGAC+TGG | + | chr2_2:58523274-58523293 | Msa0260730:intron | 40.0% | |
| TGTCCAGTCTCCGATAATTA+TGG | - | chr2_2:58523280-58523299 | None:intergenic | 40.0% | |
| ! | ACTGGACACCCTCTTATTTA+TGG | + | chr2_2:58523292-58523311 | Msa0260730:intron | 40.0% |
| ! | TATGGCATTTTACCAGAGAC+TGG | + | chr2_2:58523310-58523329 | Msa0260730:intron | 40.0% |
| TCTTCACGGAATAGATCAAG+AGG | - | chr2_2:58523537-58523556 | None:intergenic | 40.0% | |
| CTTGATCTATTCCGTGAAGA+TGG | + | chr2_2:58523537-58523556 | Msa0260730:intron | 40.0% | |
| CTCTCCCTACTATCGTTATT+AGG | + | chr2_2:58523754-58523773 | Msa0260730:intron | 40.0% | |
| AAGCCAATTCTTACCTTTGC+AGG | - | chr2_2:58523896-58523915 | None:intergenic | 40.0% | |
| TTAGGCAAACACATGGATCT+CGG | + | chr2_2:58524067-58524086 | Msa0260730:CDS | 40.0% | |
| GATTATGTTTGTGAGCAGCA+TGG | + | chr2_2:58524220-58524239 | Msa0260730:intron | 40.0% | |
| GGATCTCAGACTGTATTTAC+TGG | + | chr2_2:58524342-58524361 | Msa0260730:CDS | 40.0% | |
| CTGTTGAACAGTCCATTGTA+AGG | + | chr2_2:58524406-58524425 | Msa0260730:CDS | 40.0% | |
| TTCATGATGCTGAACCATCA+CGG | - | chr2_2:58524466-58524485 | None:intergenic | 40.0% | |
| TGAAGAGAACTCTCCAATCT+TGG | + | chr2_2:58524482-58524501 | Msa0260730:CDS | 40.0% | |
| TGTAACACAGGTTCCAAGAT+TGG | - | chr2_2:58524498-58524517 | None:intergenic | 40.0% | |
| ACATTCATAACATGCATCGG+TGG | - | chr2_2:58524540-58524559 | None:intergenic | 40.0% | |
| CAGGAGAAGTTTCATGTTGT+GGG | - | chr2_2:58524575-58524594 | None:intergenic | 40.0% | |
| !! | CAAGAATGTTTGACCGGTTT+TGG | - | chr2_2:58524605-58524624 | None:intergenic | 40.0% |
| ACATATGAGGATGCCTGAAA+TGG | + | chr2_2:58524642-58524661 | Msa0260730:exon | 40.0% | |
| ATGTTTAATCACCCTTGAGG+AGG | - | chr2_2:58524751-58524770 | None:intergenic | 40.0% | |
| !!! | CTTGAGTTTGGCCTTTTTTG+TGG | + | chr2_2:58524824-58524843 | Msa0260730:three_prime_UTR | 40.0% |
| GTTAAAGGCTGTTGTTGTGG+TGG | + | chr2_2:58520259-58520278 | Msa0260730:intron | 45.0% | |
| TAAGTCATGAGATGAGGGCA+AGG | - | chr2_2:58520423-58520442 | None:intergenic | 45.0% | |
| !! | TTTTTATTTGCGAGGGGGTG+GGG | + | chr2_2:58520835-58520854 | Msa0260730:intron | 45.0% |
| ATACACACGGTTGCATGCAA+AGG | - | chr2_2:58520919-58520938 | None:intergenic | 45.0% | |
| AGTAACAGCTGCAAGGTCTA+TGG | - | chr2_2:58520977-58520996 | None:intergenic | 45.0% | |
| TGAAGTCATGGAAGTAGCTC+TGG | + | chr2_2:58521452-58521471 | Msa0260730:CDS | 45.0% | |
| !! | TCATGGAAGTAGCTCTGGAT+AGG | + | chr2_2:58521457-58521476 | Msa0260730:CDS | 45.0% |
| GATGGTATACCAGTTGCAGA+AGG | - | chr2_2:58521524-58521543 | None:intergenic | 45.0% | |
| AAATTGGCGACCTCACTTTG+TGG | + | chr2_2:58521605-58521624 | Msa0260730:intron | 45.0% | |
| AATTGGCGACCTCACTTTGT+GGG | + | chr2_2:58521606-58521625 | Msa0260730:intron | 45.0% | |
| !! | GAGCTTTTTCCCACAAAGTG+AGG | - | chr2_2:58521618-58521637 | None:intergenic | 45.0% |
| !! | TGCCAATGGGCTAGATGATA+TGG | + | chr2_2:58521735-58521754 | Msa0260730:CDS | 45.0% |
| CTCCATATCATCTAGCCCAT+TGG | - | chr2_2:58521740-58521759 | None:intergenic | 45.0% | |
| !! | CAATGGGCTAGATGATATGG+AGG | + | chr2_2:58521738-58521757 | Msa0260730:CDS | 45.0% |
| GATATGGAGGTTGCAGCTAT+TGG | + | chr2_2:58521751-58521770 | Msa0260730:CDS | 45.0% | |
| CAGCTATTGGTGCAGTTTGT+GGG | + | chr2_2:58521764-58521783 | Msa0260730:CDS | 45.0% | |
| AGGAACAAGGTCAGTTCTGT+AGG | - | chr2_2:58521845-58521864 | None:intergenic | 45.0% | |
| AAGCGGTTATCATACCTCTC+AGG | + | chr2_2:58521922-58521941 | Msa0260730:intron | 45.0% | |
| AGCGGTTATCATACCTCTCA+GGG | + | chr2_2:58521923-58521942 | Msa0260730:intron | 45.0% | |
| AAGAGGTAATAGCCAACCAG+GGG | - | chr2_2:58521953-58521972 | None:intergenic | 45.0% | |
| CAAGAGGTAATAGCCAACCA+GGG | - | chr2_2:58521954-58521973 | None:intergenic | 45.0% | |
| !! | GACGGAGAGAGTACTTGTAT+TGG | + | chr2_2:58522420-58522439 | Msa0260730:intron | 45.0% |
| AGCATATGCCTGACCAGAAA+AGG | - | chr2_2:58522541-58522560 | None:intergenic | 45.0% | |
| GGTCAGGCATATGCTTATGA+TGG | + | chr2_2:58522546-58522565 | Msa0260730:intron | 45.0% | |
| CTCCAGTTCTTTGGACAAGT+GGG | - | chr2_2:58522827-58522846 | None:intergenic | 45.0% | |
| TCTCCAGTTCTTTGGACAAG+TGG | - | chr2_2:58522828-58522847 | None:intergenic | 45.0% | |
| ! | TTACTCTTTTGCAGGCTCTG+TGG | + | chr2_2:58522961-58522980 | Msa0260730:intron | 45.0% |
| TTCCTCTCCATTGGGCTAAA+AGG | + | chr2_2:58523157-58523176 | Msa0260730:intron | 45.0% | |
| ! | ATGACAGCCTTTTAGCCCAA+TGG | - | chr2_2:58523167-58523186 | None:intergenic | 45.0% |
| TGCATATGGGTCCATCTTCA+CGG | - | chr2_2:58523551-58523570 | None:intergenic | 45.0% | |
| TGTTCCAATCGTGGAGCTAA+GGG | - | chr2_2:58523659-58523678 | None:intergenic | 45.0% | |
| TTGTTCCAATCGTGGAGCTA+AGG | - | chr2_2:58523660-58523679 | None:intergenic | 45.0% | |
| ATTGATTAACCCCGTCAGCA+TGG | - | chr2_2:58523713-58523732 | None:intergenic | 45.0% | |
| TTGCAGGTGGTATCAGGAAA+GGG | - | chr2_2:58523880-58523899 | None:intergenic | 45.0% | |
| TTTGCAGGTGGTATCAGGAA+AGG | - | chr2_2:58523881-58523900 | None:intergenic | 45.0% | |
| TTTCCTGATACCACCTGCAA+AGG | + | chr2_2:58523880-58523899 | Msa0260730:CDS | 45.0% | |
| TTACCTTTGCAGGTGGTATC+AGG | - | chr2_2:58523886-58523905 | None:intergenic | 45.0% | |
| CCAATTCTTACCTTTGCAGG+TGG | - | chr2_2:58523893-58523912 | None:intergenic | 45.0% | |
| CCACCTGCAAAGGTAAGAAT+TGG | + | chr2_2:58523890-58523909 | Msa0260730:intron | 45.0% | |
| TGAAAGGCAGTGATCTGCTT+TGG | + | chr2_2:58523959-58523978 | Msa0260730:intron | 45.0% | |
| AGCCTCAACAAGCTGCATTT+AGG | + | chr2_2:58524049-58524068 | Msa0260730:intron | 45.0% | |
| !! | TGCCTAAATGCAGCTTGTTG+AGG | - | chr2_2:58524054-58524073 | None:intergenic | 45.0% |
| GCTGCATTTAGGCAAACACA+TGG | + | chr2_2:58524060-58524079 | Msa0260730:CDS | 45.0% | |
| TCATGATGCTGAACCATCAC+GGG | - | chr2_2:58524465-58524484 | None:intergenic | 45.0% | |
| ! | TTCATAACATGCATCGGTGG+CGG | - | chr2_2:58524537-58524556 | None:intergenic | 45.0% |
| CCAGGAGAAGTTTCATGTTG+TGG | - | chr2_2:58524576-58524595 | None:intergenic | 45.0% | |
| CCACAACATGAAACTTCTCC+TGG | + | chr2_2:58524573-58524592 | Msa0260730:CDS | 45.0% | |
| !!! | TTTTTAAAAAAAAAAAATGA+TGG | + | chr2_2:58521655-58521674 | Msa0260730:intron | 5.0% |
| CCAAGAAGACAGGCATAGGT+AGG | - | chr2_2:58520087-58520106 | None:intergenic | 50.0% | |
| CCTACCTATGCCTGTCTTCT+TGG | + | chr2_2:58520084-58520103 | Msa0260730:CDS | 50.0% | |
| ! | GGAAAGGAGGAAGCACAAAC+AGG | + | chr2_2:58520357-58520376 | Msa0260730:intron | 50.0% |
| ! | TAAGCACTCCTTTGGAGGCT+TGG | + | chr2_2:58520667-58520686 | Msa0260730:intron | 50.0% |
| GACTGGCGATGATGAAGTCA+TGG | + | chr2_2:58521440-58521459 | Msa0260730:CDS | 50.0% | |
| TACTCGCTTCCTTCTGCAAC+TGG | + | chr2_2:58521512-58521531 | Msa0260730:CDS | 50.0% | |
| GCAGCTATTGGTGCAGTTTG+TGG | + | chr2_2:58521763-58521782 | Msa0260730:CDS | 50.0% | |
| GCGGTTATCATACCTCTCAG+GGG | + | chr2_2:58521924-58521943 | Msa0260730:intron | 50.0% | |
| GCAAGAGGTAATAGCCAACC+AGG | - | chr2_2:58521955-58521974 | None:intergenic | 50.0% | |
| ACGGGACAGAATACAGCAAG+AGG | - | chr2_2:58521970-58521989 | None:intergenic | 50.0% | |
| AACTATAGCCTATGCGCCCA+TGG | + | chr2_2:58522449-58522468 | Msa0260730:intron | 50.0% | |
| GGAGAAACCCCTATCACTGA+AGG | + | chr2_2:58522594-58522613 | Msa0260730:CDS | 50.0% | |
| TGCCCACTTGTCCAAAGAAC+TGG | + | chr2_2:58522822-58522841 | Msa0260730:intron | 50.0% | |
| ! | AGCCTTTTAGCCCAATGGAG+AGG | - | chr2_2:58523162-58523181 | None:intergenic | 50.0% |
| TCTTCCCTTAGCTCCACGAT+TGG | + | chr2_2:58523652-58523671 | Msa0260730:intron | 50.0% | |
| GTCGTCTGTTGTTCCAATCG+TGG | - | chr2_2:58523668-58523687 | None:intergenic | 50.0% | |
| GTCAGCATGGAAATCACTGG+GGG | - | chr2_2:58523700-58523719 | None:intergenic | 50.0% | |
| CGTCAGCATGGAAATCACTG+GGG | - | chr2_2:58523701-58523720 | None:intergenic | 50.0% | |
| CCGTCAGCATGGAAATCACT+GGG | - | chr2_2:58523702-58523721 | None:intergenic | 50.0% | |
| CCCAGTGATTTCCATGCTGA+CGG | + | chr2_2:58523699-58523718 | Msa0260730:CDS | 50.0% | |
| CCAGTGATTTCCATGCTGAC+GGG | + | chr2_2:58523700-58523719 | Msa0260730:CDS | 50.0% | |
| CAGTGATTTCCATGCTGACG+GGG | + | chr2_2:58523701-58523720 | Msa0260730:CDS | 50.0% | |
| TGCAGGTGGTATCAGGAAAG+GGG | - | chr2_2:58523879-58523898 | None:intergenic | 50.0% | |
| CTCACTCTGTAGCTGCAGTT+AGG | + | chr2_2:58524085-58524104 | Msa0260730:CDS | 50.0% | |
| GCTGCAGTTAGGCAAACACA+TGG | + | chr2_2:58524096-58524115 | Msa0260730:CDS | 50.0% | |
| ! | CTGGAAATCGGTTCATGGCA+AGG | + | chr2_2:58524361-58524380 | Msa0260730:CDS | 50.0% |
| AAGGATTGACACTCCCGTGA+TGG | + | chr2_2:58524449-58524468 | Msa0260730:CDS | 50.0% | |
| CTCCTGGTGAACACCAAAAC+CGG | + | chr2_2:58524589-58524608 | Msa0260730:CDS | 50.0% | |
| CAAGGCCACATCATCACAAG+AGG | + | chr2_2:58524678-58524697 | Msa0260730:three_prime_UTR | 50.0% | |
| ATTAACCACGGCTGTCTCCT+TGG | - | chr2_2:58524728-58524747 | None:intergenic | 50.0% | |
| CCCTTGAGGAGGATTAACCA+CGG | - | chr2_2:58524740-58524759 | None:intergenic | 50.0% | |
| CCGTGGTTAATCCTCCTCAA+GGG | + | chr2_2:58524737-58524756 | Msa0260730:three_prime_UTR | 50.0% | |
| ! | CACTCCTTTGGAGGCTTGGA+GGG | + | chr2_2:58520671-58520690 | Msa0260730:intron | 55.0% |
| CTTGGAGGGATGGACCTCTA+AGG | + | chr2_2:58520685-58520704 | Msa0260730:intron | 55.0% | |
| !! | GTGGGGTATTGGTAGACTGG+TGG | + | chr2_2:58520852-58520871 | Msa0260730:intron | 55.0% |
| !! | GGGTATTGGTAGACTGGTGG+TGG | + | chr2_2:58520855-58520874 | Msa0260730:intron | 55.0% |
| TTGAAGGACCATGGGCGCAT+AGG | - | chr2_2:58522460-58522479 | None:intergenic | 55.0% | |
| TCCTGTCCCAGGTAGAAGAG+TGG | + | chr2_2:58523099-58523118 | Msa0260730:intron | 55.0% | |
| TCCACTCTTCTACCTGGGAC+AGG | - | chr2_2:58523103-58523122 | None:intergenic | 55.0% | |
| CTCTTGGGGCTTCGCTTTCT+TGG | + | chr2_2:58523221-58523240 | Msa0260730:intron | 55.0% | |
| ! | GATATGGGGTGTCCAGTCTC+TGG | - | chr2_2:58523325-58523344 | None:intergenic | 55.0% |
| CCCGTCAGCATGGAAATCAC+TGG | - | chr2_2:58523703-58523722 | None:intergenic | 55.0% | |
| AGTCTCAGCTAGCTGCAGCT+AGG | + | chr2_2:58524310-58524329 | Msa0260730:intron | 55.0% | |
| GCTGCAGCTAGGCAAAGACA+TGG | + | chr2_2:58524321-58524340 | Msa0260730:CDS | 55.0% | |
| ! | GGGGAGGTATGCTGTAACAC+AGG | - | chr2_2:58524510-58524529 | None:intergenic | 55.0% |
| ! | ATAACATGCATCGGTGGCGG+TGG | - | chr2_2:58524534-58524553 | None:intergenic | 55.0% |
| !!! | GACCGGTTTTGGTGTTCACC+AGG | - | chr2_2:58524594-58524613 | None:intergenic | 55.0% |
| AATAGCCAAGGAGACAGCCG+TGG | + | chr2_2:58524720-58524739 | Msa0260730:three_prime_UTR | 55.0% | |
| GCCGTGGTTAATCCTCCTCA+AGG | + | chr2_2:58524736-58524755 | Msa0260730:three_prime_UTR | 55.0% | |
| ! | GCACTCCTTTGGAGGCTTGG+AGG | + | chr2_2:58520670-58520689 | Msa0260730:intron | 60.0% |
| CCATCCCTCCAAGCCTCCAA+AGG | - | chr2_2:58520678-58520697 | None:intergenic | 60.0% | |
| ! | CCTTTGGAGGCTTGGAGGGA+TGG | + | chr2_2:58520675-58520694 | Msa0260730:intron | 60.0% |
| TTTGCGAGGGGGTGGGGTAT+TGG | + | chr2_2:58520841-58520860 | Msa0260730:intron | 60.0% | |
| !! | GGGGTGGGGTATTGGTAGAC+TGG | + | chr2_2:58520849-58520868 | Msa0260730:intron | 60.0% |
| CGTCTCTGAACTCCTGTCCC+AGG | + | chr2_2:58523088-58523107 | Msa0260730:CDS | 60.0% | |
| TACCTCTCAGGGGATGCCCC+TGG | + | chr2_2:58521934-58521953 | Msa0260730:intron | 65.0% | |
| !! | AACCAGGGGCATCCCCTGAG+AGG | - | chr2_2:58521939-58521958 | None:intergenic | 65.0% |
| TCTCAGGGGATGCCCCTGGT+TGG | + | chr2_2:58521938-58521957 | Msa0260730:intron | 65.0% | |
| ! | ACATGCATCGGTGGCGGTGG+CGG | - | chr2_2:58524531-58524550 | None:intergenic | 65.0% |
| ! | ATGCATCGGTGGCGGTGGCG+GGG | - | chr2_2:58524529-58524548 | None:intergenic | 70.0% |
| ! | CATGCATCGGTGGCGGTGGC+GGG | - | chr2_2:58524530-58524549 | None:intergenic | 70.0% |
| !!! | CATCGGTGGCGGTGGCGGGG+AGG | - | chr2_2:58524526-58524545 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 58519982 | 58524853 | 58519982 | ID=Msa0260730;Name=Msa0260730 |
| chr2_2 | mRNA | 58519982 | 58524853 | 58519982 | ID=Msa0260730-mRNA-1;Parent=Msa0260730;Name=Msa0260730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.88|0.8|1|0.88|0.9|10|194|491 |
| chr2_2 | exon | 58519982 | 58520164 | 58519982 | ID=Msa0260730-mRNA-1:exon:17966;Parent=Msa0260730-mRNA-1 |
| chr2_2 | exon | 58520973 | 58521048 | 58520973 | ID=Msa0260730-mRNA-1:exon:17967;Parent=Msa0260730-mRNA-1 |
| chr2_2 | exon | 58521415 | 58521533 | 58521415 | ID=Msa0260730-mRNA-1:exon:17968;Parent=Msa0260730-mRNA-1 |
| chr2_2 | exon | 58521706 | 58521926 | 58521706 | ID=Msa0260730-mRNA-1:exon:17969;Parent=Msa0260730-mRNA-1 |
| chr2_2 | exon | 58522552 | 58522648 | 58522552 | ID=Msa0260730-mRNA-1:exon:17970;Parent=Msa0260730-mRNA-1 |
| chr2_2 | exon | 58522975 | 58523109 | 58522975 | ID=Msa0260730-mRNA-1:exon:17971;Parent=Msa0260730-mRNA-1 |
| chr2_2 | exon | 58523663 | 58523746 | 58523663 | ID=Msa0260730-mRNA-1:exon:17972;Parent=Msa0260730-mRNA-1 |
| chr2_2 | exon | 58523833 | 58523901 | 58523833 | ID=Msa0260730-mRNA-1:exon:17973;Parent=Msa0260730-mRNA-1 |
| chr2_2 | exon | 58524051 | 58524194 | 58524051 | ID=Msa0260730-mRNA-1:exon:17974;Parent=Msa0260730-mRNA-1 |
| chr2_2 | exon | 58524312 | 58524853 | 58524312 | ID=Msa0260730-mRNA-1:exon:17975;Parent=Msa0260730-mRNA-1 |
| chr2_2 | CDS | 58519982 | 58520164 | 58519982 | ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1 |
| chr2_2 | CDS | 58520973 | 58521048 | 58520973 | ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1 |
| chr2_2 | CDS | 58521415 | 58521533 | 58521415 | ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1 |
| chr2_2 | CDS | 58521706 | 58521926 | 58521706 | ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1 |
| chr2_2 | CDS | 58522552 | 58522648 | 58522552 | ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1 |
| chr2_2 | CDS | 58522975 | 58523109 | 58522975 | ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1 |
| chr2_2 | CDS | 58523663 | 58523746 | 58523663 | ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1 |
| chr2_2 | CDS | 58523833 | 58523901 | 58523833 | ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1 |
| chr2_2 | CDS | 58524051 | 58524194 | 58524051 | ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1 |
| chr2_2 | CDS | 58524312 | 58524659 | 58524312 | ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1 |
| chr2_2 | three_prime_UTR | 58524660 | 58524853 | 58524660 | ID=Msa0260730-mRNA-1:three_prime_utr;Parent=Msa0260730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
