AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0260730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260730 MtrunA17_Chr2g0293881 88.395 517 32 4 1 491 325 839 0.0 917
Msa0260730 MtrunA17_Chr2g0293841 77.833 406 58 3 1 380 284 683 0.0 621
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260730 AT3G17205.1 50.591 423 170 8 1 393 288 701 1.80e-121 380
Msa0260730 AT3G17205.3 50.591 423 170 8 1 393 288 701 1.80e-121 380
Msa0260730 AT3G17205.2 48.456 421 168 6 1 393 288 687 6.99e-117 367

Find 132 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGGCTATTTGAGTTTA+TGG 0.130876 2_2:-58524709 None:intergenic
CCTACCTATGCCTGTCTTCT+TGG 0.177928 2_2:+58520084 Msa0260730:CDS
CTTGGAAATATATTAGAAAT+TGG 0.205553 2_2:+58520102 Msa0260730:CDS
CAAGAATGTTTGACCGGTTT+TGG 0.218101 2_2:-58524602 None:intergenic
GGCAAGGTATGATCATATTT+TGG 0.237666 2_2:+58524377 Msa0260730:CDS
AAGCCAATTCTTACCTTTGC+AGG 0.275655 2_2:-58523893 None:intergenic
TTACCTTTGCAGGTGGTATC+AGG 0.298160 2_2:-58523883 None:intergenic
AGTAGCTCTGGATAGGAAAT+TGG 0.312730 2_2:+58521464 Msa0260730:CDS
TTTGTACTGCTTGTCCTAAC+TGG 0.334967 2_2:-58523026 None:intergenic
ACCTGACTGTTCATTCGATA+TGG 0.341026 2_2:+58520143 Msa0260730:CDS
CATGCATCGGTGGCGGTGGC+GGG 0.345353 2_2:-58524527 None:intergenic
TCCTCATATGTTTCAACATT+CGG 0.346747 2_2:-58524630 None:intergenic
GGTAGAAAACTGATCAGATT+TGG 0.347970 2_2:-58520039 None:intergenic
CAGCTATTGGTGCAGTTTGT+GGG 0.354744 2_2:+58521764 Msa0260730:CDS
ACATGCATCGGTGGCGGTGG+CGG 0.371688 2_2:-58524528 None:intergenic
CTGACCTTGTTCCTATACTT+TGG 0.376008 2_2:+58521851 Msa0260730:CDS
TGCCAATGGGCTAGATGATA+TGG 0.376468 2_2:+58521735 Msa0260730:CDS
CAGTTAGATCTATTCCAGTT+AGG 0.385711 2_2:+58523012 Msa0260730:CDS
TATGCTAACCCTTTGTTGAA+TGG 0.386583 2_2:-58523063 None:intergenic
TGCTCATATCCTTCAGTGAT+AGG 0.386984 2_2:-58522603 None:intergenic
GGATCTCAGACTGTATTTAC+TGG 0.387572 2_2:+58524342 Msa0260730:CDS
AACAAGGCGTGATCATATTT+CGG 0.396503 2_2:+58524152 Msa0260730:CDS
TGAAGAGAACTCTCCAATCT+TGG 0.405172 2_2:+58524482 Msa0260730:CDS
ATTTACTGGAAATCGGTTCA+TGG 0.407526 2_2:+58524356 Msa0260730:CDS
AGCCTCAACAAGCTGCATTT+AGG 0.417719 2_2:+58524049 Msa0260730:intron
TACTCGCTTCCTTCTGCAAC+TGG 0.424069 2_2:+58521512 Msa0260730:CDS
GCAGCTATTGGTGCAGTTTG+TGG 0.424379 2_2:+58521763 Msa0260730:CDS
AGACTGTATTTACTGGAAAT+CGG 0.426807 2_2:+58524349 Msa0260730:CDS
CTCCTGGTGAACACCAAAAC+CGG 0.429834 2_2:+58524589 Msa0260730:CDS
AGTAACAGCTGCAAGGTCTA+TGG 0.435642 2_2:-58520974 None:intergenic
AGCAAATAAAATTGTAAAGA+AGG 0.436224 2_2:+58523853 Msa0260730:CDS
CCAGGAGAAGTTTCATGTTG+TGG 0.438294 2_2:-58524573 None:intergenic
TTCATAAATTTCCAAAGTAT+AGG 0.438305 2_2:-58521862 None:intergenic
GCTCATATCCTTCAGTGATA+GGG 0.440723 2_2:-58522602 None:intergenic
TACTTTGGAAATTTATGAAA+CGG 0.445587 2_2:+58521866 Msa0260730:CDS
CCATTTGATGAATGTGATGT+TGG 0.447579 2_2:-58520005 None:intergenic
CAGGAGAAGTTTCATGTTGT+GGG 0.450371 2_2:-58524572 None:intergenic
CCAGTGATTTCCATGCTGAC+GGG 0.450742 2_2:+58523700 Msa0260730:CDS
CTGTTGAACAGTCCATTGTA+AGG 0.459003 2_2:+58524406 Msa0260730:CDS
CCAACATCACATTCATCAAA+TGG 0.463047 2_2:+58520005 Msa0260730:CDS
ACATATGAGGATGCCTGAAA+TGG 0.468185 2_2:+58524642 Msa0260730:exon
TTGCAGGTGGTATCAGGAAA+GGG 0.476065 2_2:-58523877 None:intergenic
CCCAGTGATTTCCATGCTGA+CGG 0.480324 2_2:+58523699 Msa0260730:CDS
TGTAACACAGGTTCCAAGAT+TGG 0.483486 2_2:-58524495 None:intergenic
TATTGAAGCCATTCAACAAA+GGG 0.484398 2_2:+58523055 Msa0260730:CDS
TAATATATTTCCAAGAAGAC+AGG 0.485040 2_2:-58520094 None:intergenic
ACAAAAGAAAAGCAAAATCA+AGG 0.486189 2_2:-58524800 None:intergenic
TGAAGTCATGGAAGTAGCTC+TGG 0.486284 2_2:+58521452 Msa0260730:CDS
ATGCATCGGTGGCGGTGGCG+GGG 0.487315 2_2:-58524526 None:intergenic
AATTCATCTGATATATCCTT+AGG 0.489791 2_2:-58520060 None:intergenic
GAGATATTTCAGCTGCCAAT+GGG 0.493557 2_2:+58521722 Msa0260730:CDS
ATTAACCACGGCTGTCTCCT+TGG 0.495651 2_2:-58524725 None:intergenic
ACTATCCGATCTTGTTAAAG+AGG 0.497400 2_2:-58521019 None:intergenic
GGAAGATGCTTATAATTCAA+AGG 0.500185 2_2:+58524173 Msa0260730:CDS
CCCGTCAGCATGGAAATCAC+TGG 0.502031 2_2:-58523700 None:intergenic
AAGGAAAAGAAACATTCCTA+AGG 0.513013 2_2:-58524781 None:intergenic
TGCCTAAATGCAGCTTGTTG+AGG 0.513148 2_2:-58524051 None:intergenic
TCTAACTGAATTAGCAAATG+AGG 0.514566 2_2:-58522997 None:intergenic
TCTTCCCTTAGCTCCACGAT+TGG 0.514808 2_2:+58523652 Msa0260730:intron
AGAGATATTTCAGCTGCCAA+TGG 0.516832 2_2:+58521721 Msa0260730:CDS
TCATGATGCTGAACCATCAC+GGG 0.519349 2_2:-58524462 None:intergenic
GATATGGAGGTTGCAGCTAT+TGG 0.520857 2_2:+58521751 Msa0260730:CDS
CATCGGTGGCGGTGGCGGGG+AGG 0.525743 2_2:-58524523 None:intergenic
CTCACTCTGTAGCTGCAGTT+AGG 0.528654 2_2:+58524085 Msa0260730:CDS
CTGGAAATCGGTTCATGGCA+AGG 0.530924 2_2:+58524361 Msa0260730:CDS
CCGTCAGCATGGAAATCACT+GGG 0.532917 2_2:-58523699 None:intergenic
CCTCATCATTCTATTGAAGC+AGG 0.534186 2_2:+58522627 Msa0260730:CDS
TCCACTCTTCTACCTGGGAC+AGG 0.535232 2_2:-58523100 None:intergenic
CTCATATCCTTCAGTGATAG+GGG 0.537378 2_2:-58522601 None:intergenic
CTCCATATCATCTAGCCCAT+TGG 0.538054 2_2:-58521737 None:intergenic
GGAAATATATTAGAAATTGG+TGG 0.539622 2_2:+58520105 Msa0260730:CDS
GGGGAGGTATGCTGTAACAC+AGG 0.541058 2_2:-58524507 None:intergenic
GTTCATCAAGAATGTTTGAC+CGG 0.541717 2_2:-58524608 None:intergenic
GGTCAGGCATATGCTTATGA+TGG 0.544539 2_2:+58522546 Msa0260730:intron
TCATGGAAGTAGCTCTGGAT+AGG 0.545515 2_2:+58521457 Msa0260730:CDS
CTATCCGATCTTGTTAAAGA+GGG 0.546821 2_2:-58521018 None:intergenic
ATAACATGCATCGGTGGCGG+TGG 0.547008 2_2:-58524531 None:intergenic
AGGAACAAGGTCAGTTCTGT+AGG 0.547778 2_2:-58521842 None:intergenic
TTCATGTACTTGCCTTACAA+TGG 0.548828 2_2:-58524418 None:intergenic
CGTCTCTGAACTCCTGTCCC+AGG 0.555025 2_2:+58523088 Msa0260730:CDS
CCACAACATGAAACTTCTCC+TGG 0.556542 2_2:+58524573 Msa0260730:CDS
ACCGAATGTTGAAACATATG+AGG 0.557959 2_2:+58524629 Msa0260730:CDS
AGGCATATGCTTATGATGGT+TGG 0.563283 2_2:+58522550 Msa0260730:intron
ACCATATCGAATGAACAGTC+AGG 0.564118 2_2:-58520144 None:intergenic
TTCATAACATGCATCGGTGG+CGG 0.564718 2_2:-58524534 None:intergenic
TTCATGATGCTGAACCATCA+CGG 0.565941 2_2:-58524463 None:intergenic
TTAGAAAGCAGTTCAGAACA+AGG 0.566415 2_2:+58524136 Msa0260730:CDS
TTAGGCAAACACATGGATCT+CGG 0.568800 2_2:+58524103 Msa0260730:CDS
GTCGTCTGTTGTTCCAATCG+TGG 0.572553 2_2:-58523665 None:intergenic
TTCAGATTCTATGATTGCTG+AGG 0.572860 2_2:+58521410 Msa0260730:intron
TTTGCAGGTGGTATCAGGAA+AGG 0.573077 2_2:-58523878 None:intergenic
ATTTCCAAGAAGACAGGCAT+AGG 0.573882 2_2:-58520088 None:intergenic
ACACCCCTCTTTAACAAGAT+CGG 0.574783 2_2:+58521014 Msa0260730:CDS
GCCGTGGTTAATCCTCCTCA+AGG 0.581788 2_2:+58524736 Msa0260730:three_prime_UTR
AGTCTCAGCTAGCTGCAGCT+AGG 0.582532 2_2:+58524310 Msa0260730:intron
ATTGATTAACCCCGTCAGCA+TGG 0.585643 2_2:-58523710 None:intergenic
AAATTCCTCTTGTGATGATG+TGG 0.585738 2_2:-58524683 None:intergenic
CCAATTCTTACCTTTGCAGG+TGG 0.586562 2_2:-58523890 None:intergenic
ATGTTTAATCACCCTTGAGG+AGG 0.592113 2_2:-58524748 None:intergenic
CCAAGAAGACAGGCATAGGT+AGG 0.593630 2_2:-58520084 None:intergenic
TCAACATTCATAACATGCAT+CGG 0.596521 2_2:-58524540 None:intergenic
GACTGGCGATGATGAAGTCA+TGG 0.597530 2_2:+58521440 Msa0260730:CDS
CTATTGAAGCCATTCAACAA+AGG 0.600718 2_2:+58523054 Msa0260730:CDS
AGGAAAAGAAACATTCCTAA+GGG 0.602640 2_2:-58524780 None:intergenic
AAGGATTGACACTCCCGTGA+TGG 0.603506 2_2:+58524449 Msa0260730:CDS
AATGGTCATCTTTGTCTAAG+CGG 0.607096 2_2:+58521905 Msa0260730:CDS
TCCATAAACTCAAATAGCCA+AGG 0.607976 2_2:+58524708 Msa0260730:three_prime_UTR
ATTGTAAGGCAAGTACATGA+AGG 0.611738 2_2:+58524420 Msa0260730:CDS
TTGATGTTTAATCACCCTTG+AGG 0.615184 2_2:-58524751 None:intergenic
GGAGAAACCCCTATCACTGA+AGG 0.615278 2_2:+58522594 Msa0260730:CDS
TTTCCTGATACCACCTGCAA+AGG 0.616944 2_2:+58523880 Msa0260730:CDS
CAAGGCCACATCATCACAAG+AGG 0.619120 2_2:+58524678 Msa0260730:three_prime_UTR
ACAGTCATAATACTTTCAAG+TGG 0.622898 2_2:-58521814 None:intergenic
GATGGTATACCAGTTGCAGA+AGG 0.623506 2_2:-58521521 None:intergenic
AAACTGTAGTAACAGCTGCA+AGG 0.623601 2_2:-58520981 None:intergenic
CAGTGATTTCCATGCTGACG+GGG 0.633268 2_2:+58523701 Msa0260730:CDS
TGCAGGTGGTATCAGGAAAG+GGG 0.633371 2_2:-58523876 None:intergenic
ATTGCTGAGGATGATATGAC+TGG 0.639987 2_2:+58521423 Msa0260730:CDS
CCTGCTTCAATAGAATGATG+AGG 0.646238 2_2:-58522627 None:intergenic
AAGTACATGAAGGATCAGAA+AGG 0.651645 2_2:+58524430 Msa0260730:CDS
GTCAGCATGGAAATCACTGG+GGG 0.654099 2_2:-58523697 None:intergenic
CCGTGGTTAATCCTCCTCAA+GGG 0.654378 2_2:+58524737 Msa0260730:three_prime_UTR
ATTTCCAAAGTATAGGAACA+AGG 0.657837 2_2:-58521855 None:intergenic
ACATTCATAACATGCATCGG+TGG 0.662820 2_2:-58524537 None:intergenic
TATCCGATCTTGTTAAAGAG+GGG 0.669572 2_2:-58521017 None:intergenic
GCTGCAGCTAGGCAAAGACA+TGG 0.672227 2_2:+58524321 Msa0260730:CDS
AATAGCCAAGGAGACAGCCG+TGG 0.685647 2_2:+58524720 Msa0260730:three_prime_UTR
CAATGGGCTAGATGATATGG+AGG 0.691406 2_2:+58521738 Msa0260730:CDS
GCTGCAGTTAGGCAAACACA+TGG 0.691410 2_2:+58524096 Msa0260730:CDS
GCTGCATTTAGGCAAACACA+TGG 0.695976 2_2:+58524060 Msa0260730:CDS
CCCTTGAGGAGGATTAACCA+CGG 0.721249 2_2:-58524737 None:intergenic
CGTCAGCATGGAAATCACTG+GGG 0.751952 2_2:-58523698 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAAAATATAGAAATTAA+AGG + chr2_2:58520319-58520338 Msa0260730:intron 10.0%
!! TATTAAAAAGATTATACATA+AGG - chr2_2:58520748-58520767 None:intergenic 10.0%
!!! TAATTTTTATGAATAAAAGA+AGG + chr2_2:58521144-58521163 Msa0260730:intron 10.0%
!!! TTAAAATTAATGGTATTTTA+TGG - chr2_2:58521203-58521222 None:intergenic 10.0%
!!! ACCATTTTTTTTTTTAAAAT+TGG + chr2_2:58521589-58521608 Msa0260730:intron 10.0%
!!! AGTTTATTTTTATTAAAACT+GGG + chr2_2:58522847-58522866 Msa0260730:intron 10.0%
!!! TTGATTTAAAATAAATTGAA+AGG + chr2_2:58523943-58523962 Msa0260730:intron 10.0%
!!! TATTTTTTTTTTTATTTGCG+AGG + chr2_2:58520827-58520846 Msa0260730:intron 15.0%
!!! ATTTTTTTTTTTATTTGCGA+GGG + chr2_2:58520828-58520847 Msa0260730:intron 15.0%
!!! TTTATCAACTATGATAATTT+TGG - chr2_2:58521312-58521331 None:intergenic 15.0%
!!! GCCAATTTTAAAAAAAAAAA+TGG - chr2_2:58521593-58521612 None:intergenic 15.0%
!!! AATTTTTTTGCTTATAAACT+GGG - chr2_2:58522028-58522047 None:intergenic 15.0%
!!! TAATTTTTTTGCTTATAAAC+TGG - chr2_2:58522029-58522048 None:intergenic 15.0%
!! AATATTAAATAAGAATTGAC+TGG - chr2_2:58522072-58522091 None:intergenic 15.0%
!! TTAACATTAAGTATCTTTAA+GGG - chr2_2:58522134-58522153 None:intergenic 15.0%
!! TTTAACATTAAGTATCTTTA+AGG - chr2_2:58522135-58522154 None:intergenic 15.0%
!!! TTTTTGGAGAAATATTAAAT+AGG + chr2_2:58522365-58522384 Msa0260730:intron 15.0%
!! TTAGATTTAAAGAAAATTGA+AGG - chr2_2:58522476-58522495 None:intergenic 15.0%
!!! GAGTTTATTTTTATTAAAAC+TGG + chr2_2:58522846-58522865 Msa0260730:intron 15.0%
!!! GTTTATTTTTATTAAAACTG+GGG + chr2_2:58522848-58522867 Msa0260730:intron 15.0%
!!! TTTATTTTTATTAAAACTGG+GGG + chr2_2:58522849-58522868 Msa0260730:intron 15.0%
!! GTAAGCAATATTATATTTAT+GGG - chr2_2:58522881-58522900 None:intergenic 15.0%
!! TGTAAGCAATATTATATTTA+TGG - chr2_2:58522882-58522901 None:intergenic 15.0%
!! AAAAAAAATGTAGTAGATAT+GGG - chr2_2:58523340-58523359 None:intergenic 15.0%
!! TAAAAAAAATGTAGTAGATA+TGG - chr2_2:58523341-58523360 None:intergenic 15.0%
!! GAAAAAAAAGAAAACAATTA+GGG - chr2_2:58523373-58523392 None:intergenic 15.0%
!!! ATTTAATAAGAGATATTTTG+AGG + chr2_2:58523473-58523492 Msa0260730:intron 15.0%
!! ATAAACAATTTATATGCATA+TGG - chr2_2:58523600-58523619 None:intergenic 15.0%
!! AGAAAATAAAAAAGTAAGTT+AGG - chr2_2:58523635-58523654 None:intergenic 15.0%
!! TTGATAAGATAATCTTAATT+TGG + chr2_2:58523785-58523804 Msa0260730:intron 15.0%
!! CTTGGAAATATATTAGAAAT+TGG + chr2_2:58520102-58520121 Msa0260730:CDS 20.0%
!!! CATAGAGTATTGATAAAAAA+TGG - chr2_2:58520193-58520212 None:intergenic 20.0%
!! ACTTAATAAGTGTGTTAATT+CGG - chr2_2:58520639-58520658 None:intergenic 20.0%
!! AAATAACTTTCAATGTCATA+CGG - chr2_2:58520812-58520831 None:intergenic 20.0%
!!! TTTTTTTTTTTATTTGCGAG+GGG + chr2_2:58520829-58520848 Msa0260730:intron 20.0%
!!! TCAACTTTAAAATATACACA+CGG - chr2_2:58520932-58520951 None:intergenic 20.0%
!!! ATTTGCATTTATTTCTATTC+AGG + chr2_2:58520951-58520970 Msa0260730:intron 20.0%
!!! ATACCATTAATTTTAATCCT+TGG + chr2_2:58521207-58521226 Msa0260730:intron 20.0%
!! AATCCAAGGATTAAAATTAA+TGG - chr2_2:58521213-58521232 None:intergenic 20.0%
!! TTCATAAATTTCCAAAGTAT+AGG - chr2_2:58521865-58521884 None:intergenic 20.0%
!!! TACTTTGGAAATTTATGAAA+CGG + chr2_2:58521866-58521885 Msa0260730:CDS 20.0%
!! TAAAATTTCTTACTTGTAGA+CGG - chr2_2:58521989-58522008 None:intergenic 20.0%
!! TTGATGAATAATTAATGTAG+AGG + chr2_2:58522231-58522250 Msa0260730:intron 20.0%
!!! TAGTGTGAAATAATTTTGTT+TGG - chr2_2:58522257-58522276 None:intergenic 20.0%
!! AAACAAAATTATTTCACACT+AGG + chr2_2:58522256-58522275 Msa0260730:intron 20.0%
!! AATATTAAATAGGTCAAAAG+TGG + chr2_2:58522375-58522394 Msa0260730:intron 20.0%
!! ATATTAAATAGGTCAAAAGT+GGG + chr2_2:58522376-58522395 Msa0260730:intron 20.0%
!! TAATTAATTGTTCACTGAAA+TGG + chr2_2:58522733-58522752 Msa0260730:intron 20.0%
!! AATTAATTGTTCACTGAAAT+GGG + chr2_2:58522734-58522753 Msa0260730:intron 20.0%
!!! TTATTTTTATTAAAACTGGG+GGG + chr2_2:58522850-58522869 Msa0260730:intron 20.0%
!! CATTTATATGAAGCAATATA+AGG - chr2_2:58522907-58522926 None:intergenic 20.0%
!!! CATATTTTGTCTATCTTTAA+AGG + chr2_2:58523195-58523214 Msa0260730:intron 20.0%
!! AAAAAAATGTAGTAGATATG+GGG - chr2_2:58523339-58523358 None:intergenic 20.0%
!! CGAAAAAAAAGAAAACAATT+AGG - chr2_2:58523374-58523393 None:intergenic 20.0%
!! AATTTATATGCATATGGTTA+TGG - chr2_2:58523594-58523613 None:intergenic 20.0%
!!! TAATCAATTTTTCATATCTC+AGG + chr2_2:58523725-58523744 Msa0260730:CDS 20.0%
!!! TTATATAATCTTTTCTCTAC+AGG + chr2_2:58523811-58523830 Msa0260730:intron 20.0%
!! AGCAAATAAAATTGTAAAGA+AGG + chr2_2:58523853-58523872 Msa0260730:CDS 20.0%
! AATTCATCTGATATATCCTT+AGG - chr2_2:58520063-58520082 None:intergenic 25.0%
! TAATATATTTCCAAGAAGAC+AGG - chr2_2:58520097-58520116 None:intergenic 25.0%
! GGAAATATATTAGAAATTGG+TGG + chr2_2:58520105-58520124 Msa0260730:CDS 25.0%
! AATCCAAGATAAGTCATAAA+GGG - chr2_2:58520237-58520256 None:intergenic 25.0%
! TAATCCAAGATAAGTCATAA+AGG - chr2_2:58520238-58520257 None:intergenic 25.0%
!!! ATCCCTAAATTCTAGTTTTA+CGG + chr2_2:58520550-58520569 Msa0260730:intron 25.0%
! TGTTGAGAATACAAATAAGT+TGG + chr2_2:58520583-58520602 Msa0260730:intron 25.0%
!!! TTTTTTTTTTATTTGCGAGG+GGG + chr2_2:58520830-58520849 Msa0260730:intron 25.0%
!! TGTTTTCTAATCACATAGTT+TGG + chr2_2:58521052-58521071 Msa0260730:intron 25.0%
! TGTAAGAAGTTAGAAAGAAA+GGG - chr2_2:58521094-58521113 None:intergenic 25.0%
! ATGTAAGAAGTTAGAAAGAA+AGG - chr2_2:58521095-58521114 None:intergenic 25.0%
! TTATGAATAAAAGAAGGCTA+AGG + chr2_2:58521150-58521169 Msa0260730:intron 25.0%
! AATGAGAACAAATAAATCCA+AGG - chr2_2:58521227-58521246 None:intergenic 25.0%
!! ATGGTAAAGCAAAATTTTGA+TGG - chr2_2:58521574-58521593 None:intergenic 25.0%
!!! ATGACCATTTTTTATTCTCT+TGG - chr2_2:58521894-58521913 None:intergenic 25.0%
! AAAATTTCTTACTTGTAGAC+GGG - chr2_2:58521988-58522007 None:intergenic 25.0%
!! AACTTTTCTTTAATACTGCA+AGG + chr2_2:58522162-58522181 Msa0260730:intron 25.0%
!! ACTTTTCTTTAATACTGCAA+GGG + chr2_2:58522163-58522182 Msa0260730:intron 25.0%
!! AGTATATTCTAATCCTTTTC+TGG + chr2_2:58522525-58522544 Msa0260730:intron 25.0%
!! TAATGAGAAATTTTATGAGC+AGG + chr2_2:58522573-58522592 Msa0260730:CDS 25.0%
!! TTTTATATTTCCTCTCCATT+GGG + chr2_2:58523149-58523168 Msa0260730:intron 25.0%
!!! TCTTGGTCTTTTCTTATTTA+TGG + chr2_2:58523238-58523257 Msa0260730:intron 25.0%
! GTAAAATGCCATAAATAAGA+GGG - chr2_2:58523303-58523322 None:intergenic 25.0%
! TATTGGATGTAAATGCATAT+GGG - chr2_2:58523564-58523583 None:intergenic 25.0%
! TTATTGGATGTAAATGCATA+TGG - chr2_2:58523565-58523584 None:intergenic 25.0%
!! TTATGATTTTTGTCCATTTC+AGG - chr2_2:58524658-58524677 None:intergenic 25.0%
! AATGGACAAAAATCATAACA+AGG + chr2_2:58524660-58524679 Msa0260730:three_prime_UTR 25.0%
! ACAAAAGAAAAGCAAAATCA+AGG - chr2_2:58524803-58524822 None:intergenic 25.0%
GATAAAAAATGGCACAATGT+AGG - chr2_2:58520182-58520201 None:intergenic 30.0%
CTTATCTTGGATTACGTTAA+AGG + chr2_2:58520244-58520263 Msa0260730:intron 30.0%
TAAAGGATGATTTCTTGCTT+AGG + chr2_2:58520336-58520355 Msa0260730:intron 30.0%
! AACAGGTTGAAACAGATTTA+TGG + chr2_2:58520374-58520393 Msa0260730:intron 30.0%
! ACAGGTTGAAACAGATTTAT+GGG + chr2_2:58520375-58520394 Msa0260730:intron 30.0%
!! GGCATTTTAAAGAGTTTATC+TGG + chr2_2:58520397-58520416 Msa0260730:intron 30.0%
GTAAAACTAGAATTTAGGGA+TGG - chr2_2:58520551-58520570 None:intergenic 30.0%
CACCGTAAAACTAGAATTTA+GGG - chr2_2:58520555-58520574 None:intergenic 30.0%
TCACCGTAAAACTAGAATTT+AGG - chr2_2:58520556-58520575 None:intergenic 30.0%
! TCTGCATACTAAACAAGTTT+TGG + chr2_2:58520709-58520728 Msa0260730:intron 30.0%
CAAATATGAACCACCATTAT+AGG + chr2_2:58521173-58521192 Msa0260730:intron 30.0%
! ATTTTATGGACCACCTATAA+TGG - chr2_2:58521189-58521208 None:intergenic 30.0%
!!! TGTACCATTTGTTTTTAAGC+TGG + chr2_2:58521376-58521395 Msa0260730:intron 30.0%
TACAAAAGTCATTTGCATGA+TGG - chr2_2:58521542-58521561 None:intergenic 30.0%
ACAGTCATAATACTTTCAAG+TGG - chr2_2:58521817-58521836 None:intergenic 30.0%
ATTTCCAAAGTATAGGAACA+AGG - chr2_2:58521858-58521877 None:intergenic 30.0%
! TTTTTGCTTATAAACTGGGA+GGG - chr2_2:58522024-58522043 None:intergenic 30.0%
!!! TTTTTTGCTTATAAACTGGG+AGG - chr2_2:58522025-58522044 None:intergenic 30.0%
! AGTATCTTTAAGGGTAGTTT+CGG - chr2_2:58522125-58522144 None:intergenic 30.0%
ATCATTATTAGCACTATCCT+TGG - chr2_2:58522196-58522215 None:intergenic 30.0%
CTAATAATGATCACATGCAT+CGG + chr2_2:58522205-58522224 Msa0260730:intron 30.0%
! TTTGGAACTGCATAAACATA+TGG + chr2_2:58522285-58522304 Msa0260730:intron 30.0%
TAAACATATGGATGATACAC+TGG + chr2_2:58522297-58522316 Msa0260730:intron 30.0%
TATCTCCAATAAGTAGCATA+AGG + chr2_2:58522339-58522358 Msa0260730:intron 30.0%
ATCTCCAATAAGTAGCATAA+GGG + chr2_2:58522340-58522359 Msa0260730:intron 30.0%
! AATACCCTTATGCTACTTAT+TGG - chr2_2:58522347-58522366 None:intergenic 30.0%
!!! AAGTAGCATAAGGGTATTTT+TGG + chr2_2:58522349-58522368 Msa0260730:intron 30.0%
! GTCTCTTTTGCTGATAATTT+GGG + chr2_2:58522398-58522417 Msa0260730:intron 30.0%
AAAGAAAATTGAAGGACCAT+GGG - chr2_2:58522468-58522487 None:intergenic 30.0%
TAAAGAAAATTGAAGGACCA+TGG - chr2_2:58522469-58522488 None:intergenic 30.0%
CTTAAAGTGAAAGGAAGAAA+AGG - chr2_2:58522761-58522780 None:intergenic 30.0%
! CTTTTCTTCCTTTCACTTTA+AGG + chr2_2:58522759-58522778 Msa0260730:intron 30.0%
AAGATTTGACACAACTTATC+TGG - chr2_2:58522790-58522809 None:intergenic 30.0%
AAATAAACTCTCCAGTTCTT+TGG - chr2_2:58522836-58522855 None:intergenic 30.0%
TCTAACTGAATTAGCAAATG+AGG - chr2_2:58523000-58523019 None:intergenic 30.0%
TATTGAAGCCATTCAACAAA+GGG + chr2_2:58523055-58523074 Msa0260730:CDS 30.0%
! GTTTTATATTTCCTCTCCAT+TGG + chr2_2:58523148-58523167 Msa0260730:intron 30.0%
!! TATCTTTAAAGGCATCTCTT+GGG + chr2_2:58523206-58523225 Msa0260730:intron 30.0%
GGTAAAATGCCATAAATAAG+AGG - chr2_2:58523304-58523323 None:intergenic 30.0%
AAGAGTAAAATCGCAATTAC+AGG - chr2_2:58523426-58523445 None:intergenic 30.0%
ATGGTTATGGTTATGGTTAT+TGG - chr2_2:58523581-58523600 None:intergenic 30.0%
TATGCATATGGTTATGGTTA+TGG - chr2_2:58523588-58523607 None:intergenic 30.0%
TTCACCTAATAACGATAGTA+GGG - chr2_2:58523761-58523780 None:intergenic 30.0%
TTTCACCTAATAACGATAGT+AGG - chr2_2:58523762-58523781 None:intergenic 30.0%
! TCTGAACTGCTTTCTAAAAA+TGG - chr2_2:58524133-58524152 None:intergenic 30.0%
GGAAGATGCTTATAATTCAA+AGG + chr2_2:58524173-58524192 Msa0260730:CDS 30.0%
AGACTGTATTTACTGGAAAT+CGG + chr2_2:58524349-58524368 Msa0260730:CDS 30.0%
TCAACATTCATAACATGCAT+CGG - chr2_2:58524543-58524562 None:intergenic 30.0%
TCCTCATATGTTTCAACATT+CGG - chr2_2:58524633-58524652 None:intergenic 30.0%
! AAACATCAACATTTTCCCTT+AGG + chr2_2:58524765-58524784 Msa0260730:three_prime_UTR 30.0%
AGGAAAAGAAACATTCCTAA+GGG - chr2_2:58524783-58524802 None:intergenic 30.0%
AAGGAAAAGAAACATTCCTA+AGG - chr2_2:58524784-58524803 None:intergenic 30.0%
! TTTTCTTTTGTGCTTGAGTT+TGG + chr2_2:58524812-58524831 Msa0260730:three_prime_UTR 30.0%
CCATTTGATGAATGTGATGT+TGG - chr2_2:58520008-58520027 None:intergenic 35.0%
CCAACATCACATTCATCAAA+TGG + chr2_2:58520005-58520024 Msa0260730:CDS 35.0%
GGTAGAAAACTGATCAGATT+TGG - chr2_2:58520042-58520061 None:intergenic 35.0%
! TCTGATCAGTTTTCTACCTA+AGG + chr2_2:58520044-58520063 Msa0260730:CDS 35.0%
TCTCCCTTTATGACTTATCT+TGG + chr2_2:58520231-58520250 Msa0260730:intron 35.0%
GATGATTTCTTGCTTAGGAA+AGG + chr2_2:58520341-58520360 Msa0260730:intron 35.0%
! CAGGTTGAAACAGATTTATG+GGG + chr2_2:58520376-58520395 Msa0260730:intron 35.0%
TGTTTATCTAAGCACTCCTT+TGG + chr2_2:58520659-58520678 Msa0260730:intron 35.0%
! AGCTGTTACTACAGTTTTAC+TGG + chr2_2:58520987-58521006 Msa0260730:CDS 35.0%
! TGTTACTACAGTTTTACTGG+AGG + chr2_2:58520990-58521009 Msa0260730:CDS 35.0%
TATCCGATCTTGTTAAAGAG+GGG - chr2_2:58521020-58521039 None:intergenic 35.0%
CTATCCGATCTTGTTAAAGA+GGG - chr2_2:58521021-58521040 None:intergenic 35.0%
ACTATCCGATCTTGTTAAAG+AGG - chr2_2:58521022-58521041 None:intergenic 35.0%
ATATGAACCACCATTATAGG+TGG + chr2_2:58521176-58521195 Msa0260730:intron 35.0%
!! CTATAGTTAATTTGCGTGCA+AGG - chr2_2:58521260-58521279 None:intergenic 35.0%
CTGACCAGCTTAAAAACAAA+TGG - chr2_2:58521383-58521402 None:intergenic 35.0%
TTCAGATTCTATGATTGCTG+AGG + chr2_2:58521410-58521429 Msa0260730:intron 35.0%
GGTGCCAAGAGAATAAAAAA+TGG + chr2_2:58521887-58521906 Msa0260730:CDS 35.0%
AATGGTCATCTTTGTCTAAG+CGG + chr2_2:58521905-58521924 Msa0260730:CDS 35.0%
! TTTCACACTAGGCATGTTTT+TGG + chr2_2:58522267-58522286 Msa0260730:intron 35.0%
ACTGGAAATGCATAAACATG+TGG + chr2_2:58522315-58522334 Msa0260730:intron 35.0%
CTGGAAATGCATAAACATGT+GGG + chr2_2:58522316-58522335 Msa0260730:intron 35.0%
! GGTCTCTTTTGCTGATAATT+TGG + chr2_2:58522397-58522416 Msa0260730:intron 35.0%
! CTTTTGCTGATAATTTGGGA+CGG + chr2_2:58522402-58522421 Msa0260730:intron 35.0%
!! ATTCTAATCCTTTTCTGGTC+AGG + chr2_2:58522530-58522549 Msa0260730:intron 35.0%
!! GTTCTGAGATTGAAATCGTT+AGG + chr2_2:58522698-58522717 Msa0260730:intron 35.0%
TGGATCTTCCTTAAAGTGAA+AGG - chr2_2:58522770-58522789 None:intergenic 35.0%
CAGTTAGATCTATTCCAGTT+AGG + chr2_2:58523012-58523031 Msa0260730:CDS 35.0%
CTATTGAAGCCATTCAACAA+AGG + chr2_2:58523054-58523073 Msa0260730:CDS 35.0%
TATGCTAACCCTTTGTTGAA+TGG - chr2_2:58523066-58523085 None:intergenic 35.0%
!! CTATCTTTAAAGGCATCTCT+TGG + chr2_2:58523205-58523224 Msa0260730:intron 35.0%
!! ATCTTTAAAGGCATCTCTTG+GGG + chr2_2:58523207-58523226 Msa0260730:intron 35.0%
CAGTGCAATGCCATAATTAT+CGG + chr2_2:58523267-58523286 Msa0260730:intron 35.0%
GTAAAATCGCAATTACAGGA+AGG - chr2_2:58523422-58523441 None:intergenic 35.0%
TTAGAAAGCAGTTCAGAACA+AGG + chr2_2:58524136-58524155 Msa0260730:CDS 35.0%
AACAAGGCGTGATCATATTT+CGG + chr2_2:58524152-58524171 Msa0260730:CDS 35.0%
! ATTTACTGGAAATCGGTTCA+TGG + chr2_2:58524356-58524375 Msa0260730:CDS 35.0%
! GGCAAGGTATGATCATATTT+TGG + chr2_2:58524377-58524396 Msa0260730:CDS 35.0%
TTCATGTACTTGCCTTACAA+TGG - chr2_2:58524421-58524440 None:intergenic 35.0%
ATTGTAAGGCAAGTACATGA+AGG + chr2_2:58524420-58524439 Msa0260730:CDS 35.0%
AAGTACATGAAGGATCAGAA+AGG + chr2_2:58524430-58524449 Msa0260730:CDS 35.0%
GTTCATCAAGAATGTTTGAC+CGG - chr2_2:58524611-58524630 None:intergenic 35.0%
ACCGAATGTTGAAACATATG+AGG + chr2_2:58524629-58524648 Msa0260730:CDS 35.0%
! AAATTCCTCTTGTGATGATG+TGG - chr2_2:58524686-58524705 None:intergenic 35.0%
TCCATAAACTCAAATAGCCA+AGG + chr2_2:58524708-58524727 Msa0260730:three_prime_UTR 35.0%
! TCCTTGGCTATTTGAGTTTA+TGG - chr2_2:58524712-58524731 None:intergenic 35.0%
TTGATGTTTAATCACCCTTG+AGG - chr2_2:58524754-58524773 None:intergenic 35.0%
!!! TTGAGTTTGGCCTTTTTTGT+GGG + chr2_2:58524825-58524844 Msa0260730:three_prime_UTR 35.0%
ATTTCCAAGAAGACAGGCAT+AGG - chr2_2:58520091-58520110 None:intergenic 40.0%
ACCTGACTGTTCATTCGATA+TGG + chr2_2:58520143-58520162 Msa0260730:CDS 40.0%
ACCATATCGAATGAACAGTC+AGG - chr2_2:58520147-58520166 None:intergenic 40.0%
TACGTTAAAGGCTGTTGTTG+TGG + chr2_2:58520256-58520275 Msa0260730:intron 40.0%
GATTTCTTGCTTAGGAAAGG+AGG + chr2_2:58520344-58520363 Msa0260730:intron 40.0%
GTGCTTAAGTCATGAGATGA+GGG - chr2_2:58520428-58520447 None:intergenic 40.0%
AGTGCTTAAGTCATGAGATG+AGG - chr2_2:58520429-58520448 None:intergenic 40.0%
!! TAAGCGCTTTGAGAAGCTTA+TGG + chr2_2:58520479-58520498 Msa0260730:intron 40.0%
! TAAGTTGGCAACATAAGCTC+TGG + chr2_2:58520598-58520617 Msa0260730:intron 40.0%
TTATCTAAGCACTCCTTTGG+AGG + chr2_2:58520662-58520681 Msa0260730:intron 40.0%
TTTAGTATGCAGAGCCTTAG+AGG - chr2_2:58520702-58520721 None:intergenic 40.0%
!!! TTTTTTTATTTGCGAGGGGG+TGG + chr2_2:58520833-58520852 Msa0260730:intron 40.0%
!!! TTTTTTATTTGCGAGGGGGT+GGG + chr2_2:58520834-58520853 Msa0260730:intron 40.0%
AAACTGTAGTAACAGCTGCA+AGG - chr2_2:58520984-58521003 None:intergenic 40.0%
ACACCCCTCTTTAACAAGAT+CGG + chr2_2:58521014-58521033 Msa0260730:CDS 40.0%
TTATGGACCACCTATAATGG+TGG - chr2_2:58521186-58521205 None:intergenic 40.0%
ATTGCTGAGGATGATATGAC+TGG + chr2_2:58521423-58521442 Msa0260730:CDS 40.0%
!! AGTAGCTCTGGATAGGAAAT+TGG + chr2_2:58521464-58521483 Msa0260730:CDS 40.0%
TCACTTTGTGGGAAAAAGCT+CGG + chr2_2:58521617-58521636 Msa0260730:intron 40.0%
AGAGATATTTCAGCTGCCAA+TGG + chr2_2:58521721-58521740 Msa0260730:CDS 40.0%
GAGATATTTCAGCTGCCAAT+GGG + chr2_2:58521722-58521741 Msa0260730:CDS 40.0%
CTGACCTTGTTCCTATACTT+TGG + chr2_2:58521851-58521870 Msa0260730:CDS 40.0%
TAAGGGTAGTTTCGGAAACA+TGG - chr2_2:58522117-58522136 None:intergenic 40.0%
!!! ACTGCAAGGGTTTTATTCCA+AGG + chr2_2:58522176-58522195 Msa0260730:intron 40.0%
AGGCATATGCTTATGATGGT+TGG + chr2_2:58522550-58522569 Msa0260730:intron 40.0%
CTCATATCCTTCAGTGATAG+GGG - chr2_2:58522604-58522623 None:intergenic 40.0%
GCTCATATCCTTCAGTGATA+GGG - chr2_2:58522605-58522624 None:intergenic 40.0%
TGCTCATATCCTTCAGTGAT+AGG - chr2_2:58522606-58522625 None:intergenic 40.0%
CCTGCTTCAATAGAATGATG+AGG - chr2_2:58522630-58522649 None:intergenic 40.0%
CCTCATCATTCTATTGAAGC+AGG + chr2_2:58522627-58522646 Msa0260730:CDS 40.0%
! CAGTCAGTTTACTCTTTTGC+AGG + chr2_2:58522953-58522972 Msa0260730:intron 40.0%
TTTGTACTGCTTGTCCTAAC+TGG - chr2_2:58523029-58523048 None:intergenic 40.0%
TTGATTCCACTCTTCTACCT+GGG - chr2_2:58523108-58523127 None:intergenic 40.0%
! ATTGATTCCACTCTTCTACC+TGG - chr2_2:58523109-58523128 None:intergenic 40.0%
ATGCCATAATTATCGGAGAC+TGG + chr2_2:58523274-58523293 Msa0260730:intron 40.0%
TGTCCAGTCTCCGATAATTA+TGG - chr2_2:58523280-58523299 None:intergenic 40.0%
! ACTGGACACCCTCTTATTTA+TGG + chr2_2:58523292-58523311 Msa0260730:intron 40.0%
! TATGGCATTTTACCAGAGAC+TGG + chr2_2:58523310-58523329 Msa0260730:intron 40.0%
TCTTCACGGAATAGATCAAG+AGG - chr2_2:58523537-58523556 None:intergenic 40.0%
CTTGATCTATTCCGTGAAGA+TGG + chr2_2:58523537-58523556 Msa0260730:intron 40.0%
CTCTCCCTACTATCGTTATT+AGG + chr2_2:58523754-58523773 Msa0260730:intron 40.0%
AAGCCAATTCTTACCTTTGC+AGG - chr2_2:58523896-58523915 None:intergenic 40.0%
TTAGGCAAACACATGGATCT+CGG + chr2_2:58524067-58524086 Msa0260730:CDS 40.0%
GATTATGTTTGTGAGCAGCA+TGG + chr2_2:58524220-58524239 Msa0260730:intron 40.0%
GGATCTCAGACTGTATTTAC+TGG + chr2_2:58524342-58524361 Msa0260730:CDS 40.0%
CTGTTGAACAGTCCATTGTA+AGG + chr2_2:58524406-58524425 Msa0260730:CDS 40.0%
TTCATGATGCTGAACCATCA+CGG - chr2_2:58524466-58524485 None:intergenic 40.0%
TGAAGAGAACTCTCCAATCT+TGG + chr2_2:58524482-58524501 Msa0260730:CDS 40.0%
TGTAACACAGGTTCCAAGAT+TGG - chr2_2:58524498-58524517 None:intergenic 40.0%
ACATTCATAACATGCATCGG+TGG - chr2_2:58524540-58524559 None:intergenic 40.0%
CAGGAGAAGTTTCATGTTGT+GGG - chr2_2:58524575-58524594 None:intergenic 40.0%
!! CAAGAATGTTTGACCGGTTT+TGG - chr2_2:58524605-58524624 None:intergenic 40.0%
ACATATGAGGATGCCTGAAA+TGG + chr2_2:58524642-58524661 Msa0260730:exon 40.0%
ATGTTTAATCACCCTTGAGG+AGG - chr2_2:58524751-58524770 None:intergenic 40.0%
!!! CTTGAGTTTGGCCTTTTTTG+TGG + chr2_2:58524824-58524843 Msa0260730:three_prime_UTR 40.0%
GTTAAAGGCTGTTGTTGTGG+TGG + chr2_2:58520259-58520278 Msa0260730:intron 45.0%
TAAGTCATGAGATGAGGGCA+AGG - chr2_2:58520423-58520442 None:intergenic 45.0%
!! TTTTTATTTGCGAGGGGGTG+GGG + chr2_2:58520835-58520854 Msa0260730:intron 45.0%
ATACACACGGTTGCATGCAA+AGG - chr2_2:58520919-58520938 None:intergenic 45.0%
AGTAACAGCTGCAAGGTCTA+TGG - chr2_2:58520977-58520996 None:intergenic 45.0%
TGAAGTCATGGAAGTAGCTC+TGG + chr2_2:58521452-58521471 Msa0260730:CDS 45.0%
!! TCATGGAAGTAGCTCTGGAT+AGG + chr2_2:58521457-58521476 Msa0260730:CDS 45.0%
GATGGTATACCAGTTGCAGA+AGG - chr2_2:58521524-58521543 None:intergenic 45.0%
AAATTGGCGACCTCACTTTG+TGG + chr2_2:58521605-58521624 Msa0260730:intron 45.0%
AATTGGCGACCTCACTTTGT+GGG + chr2_2:58521606-58521625 Msa0260730:intron 45.0%
!! GAGCTTTTTCCCACAAAGTG+AGG - chr2_2:58521618-58521637 None:intergenic 45.0%
!! TGCCAATGGGCTAGATGATA+TGG + chr2_2:58521735-58521754 Msa0260730:CDS 45.0%
CTCCATATCATCTAGCCCAT+TGG - chr2_2:58521740-58521759 None:intergenic 45.0%
!! CAATGGGCTAGATGATATGG+AGG + chr2_2:58521738-58521757 Msa0260730:CDS 45.0%
GATATGGAGGTTGCAGCTAT+TGG + chr2_2:58521751-58521770 Msa0260730:CDS 45.0%
CAGCTATTGGTGCAGTTTGT+GGG + chr2_2:58521764-58521783 Msa0260730:CDS 45.0%
AGGAACAAGGTCAGTTCTGT+AGG - chr2_2:58521845-58521864 None:intergenic 45.0%
AAGCGGTTATCATACCTCTC+AGG + chr2_2:58521922-58521941 Msa0260730:intron 45.0%
AGCGGTTATCATACCTCTCA+GGG + chr2_2:58521923-58521942 Msa0260730:intron 45.0%
AAGAGGTAATAGCCAACCAG+GGG - chr2_2:58521953-58521972 None:intergenic 45.0%
CAAGAGGTAATAGCCAACCA+GGG - chr2_2:58521954-58521973 None:intergenic 45.0%
!! GACGGAGAGAGTACTTGTAT+TGG + chr2_2:58522420-58522439 Msa0260730:intron 45.0%
AGCATATGCCTGACCAGAAA+AGG - chr2_2:58522541-58522560 None:intergenic 45.0%
GGTCAGGCATATGCTTATGA+TGG + chr2_2:58522546-58522565 Msa0260730:intron 45.0%
CTCCAGTTCTTTGGACAAGT+GGG - chr2_2:58522827-58522846 None:intergenic 45.0%
TCTCCAGTTCTTTGGACAAG+TGG - chr2_2:58522828-58522847 None:intergenic 45.0%
! TTACTCTTTTGCAGGCTCTG+TGG + chr2_2:58522961-58522980 Msa0260730:intron 45.0%
TTCCTCTCCATTGGGCTAAA+AGG + chr2_2:58523157-58523176 Msa0260730:intron 45.0%
! ATGACAGCCTTTTAGCCCAA+TGG - chr2_2:58523167-58523186 None:intergenic 45.0%
TGCATATGGGTCCATCTTCA+CGG - chr2_2:58523551-58523570 None:intergenic 45.0%
TGTTCCAATCGTGGAGCTAA+GGG - chr2_2:58523659-58523678 None:intergenic 45.0%
TTGTTCCAATCGTGGAGCTA+AGG - chr2_2:58523660-58523679 None:intergenic 45.0%
ATTGATTAACCCCGTCAGCA+TGG - chr2_2:58523713-58523732 None:intergenic 45.0%
TTGCAGGTGGTATCAGGAAA+GGG - chr2_2:58523880-58523899 None:intergenic 45.0%
TTTGCAGGTGGTATCAGGAA+AGG - chr2_2:58523881-58523900 None:intergenic 45.0%
TTTCCTGATACCACCTGCAA+AGG + chr2_2:58523880-58523899 Msa0260730:CDS 45.0%
TTACCTTTGCAGGTGGTATC+AGG - chr2_2:58523886-58523905 None:intergenic 45.0%
CCAATTCTTACCTTTGCAGG+TGG - chr2_2:58523893-58523912 None:intergenic 45.0%
CCACCTGCAAAGGTAAGAAT+TGG + chr2_2:58523890-58523909 Msa0260730:intron 45.0%
TGAAAGGCAGTGATCTGCTT+TGG + chr2_2:58523959-58523978 Msa0260730:intron 45.0%
AGCCTCAACAAGCTGCATTT+AGG + chr2_2:58524049-58524068 Msa0260730:intron 45.0%
!! TGCCTAAATGCAGCTTGTTG+AGG - chr2_2:58524054-58524073 None:intergenic 45.0%
GCTGCATTTAGGCAAACACA+TGG + chr2_2:58524060-58524079 Msa0260730:CDS 45.0%
TCATGATGCTGAACCATCAC+GGG - chr2_2:58524465-58524484 None:intergenic 45.0%
! TTCATAACATGCATCGGTGG+CGG - chr2_2:58524537-58524556 None:intergenic 45.0%
CCAGGAGAAGTTTCATGTTG+TGG - chr2_2:58524576-58524595 None:intergenic 45.0%
CCACAACATGAAACTTCTCC+TGG + chr2_2:58524573-58524592 Msa0260730:CDS 45.0%
!!! TTTTTAAAAAAAAAAAATGA+TGG + chr2_2:58521655-58521674 Msa0260730:intron 5.0%
CCAAGAAGACAGGCATAGGT+AGG - chr2_2:58520087-58520106 None:intergenic 50.0%
CCTACCTATGCCTGTCTTCT+TGG + chr2_2:58520084-58520103 Msa0260730:CDS 50.0%
! GGAAAGGAGGAAGCACAAAC+AGG + chr2_2:58520357-58520376 Msa0260730:intron 50.0%
! TAAGCACTCCTTTGGAGGCT+TGG + chr2_2:58520667-58520686 Msa0260730:intron 50.0%
GACTGGCGATGATGAAGTCA+TGG + chr2_2:58521440-58521459 Msa0260730:CDS 50.0%
TACTCGCTTCCTTCTGCAAC+TGG + chr2_2:58521512-58521531 Msa0260730:CDS 50.0%
GCAGCTATTGGTGCAGTTTG+TGG + chr2_2:58521763-58521782 Msa0260730:CDS 50.0%
GCGGTTATCATACCTCTCAG+GGG + chr2_2:58521924-58521943 Msa0260730:intron 50.0%
GCAAGAGGTAATAGCCAACC+AGG - chr2_2:58521955-58521974 None:intergenic 50.0%
ACGGGACAGAATACAGCAAG+AGG - chr2_2:58521970-58521989 None:intergenic 50.0%
AACTATAGCCTATGCGCCCA+TGG + chr2_2:58522449-58522468 Msa0260730:intron 50.0%
GGAGAAACCCCTATCACTGA+AGG + chr2_2:58522594-58522613 Msa0260730:CDS 50.0%
TGCCCACTTGTCCAAAGAAC+TGG + chr2_2:58522822-58522841 Msa0260730:intron 50.0%
! AGCCTTTTAGCCCAATGGAG+AGG - chr2_2:58523162-58523181 None:intergenic 50.0%
TCTTCCCTTAGCTCCACGAT+TGG + chr2_2:58523652-58523671 Msa0260730:intron 50.0%
GTCGTCTGTTGTTCCAATCG+TGG - chr2_2:58523668-58523687 None:intergenic 50.0%
GTCAGCATGGAAATCACTGG+GGG - chr2_2:58523700-58523719 None:intergenic 50.0%
CGTCAGCATGGAAATCACTG+GGG - chr2_2:58523701-58523720 None:intergenic 50.0%
CCGTCAGCATGGAAATCACT+GGG - chr2_2:58523702-58523721 None:intergenic 50.0%
CCCAGTGATTTCCATGCTGA+CGG + chr2_2:58523699-58523718 Msa0260730:CDS 50.0%
CCAGTGATTTCCATGCTGAC+GGG + chr2_2:58523700-58523719 Msa0260730:CDS 50.0%
CAGTGATTTCCATGCTGACG+GGG + chr2_2:58523701-58523720 Msa0260730:CDS 50.0%
TGCAGGTGGTATCAGGAAAG+GGG - chr2_2:58523879-58523898 None:intergenic 50.0%
CTCACTCTGTAGCTGCAGTT+AGG + chr2_2:58524085-58524104 Msa0260730:CDS 50.0%
GCTGCAGTTAGGCAAACACA+TGG + chr2_2:58524096-58524115 Msa0260730:CDS 50.0%
! CTGGAAATCGGTTCATGGCA+AGG + chr2_2:58524361-58524380 Msa0260730:CDS 50.0%
AAGGATTGACACTCCCGTGA+TGG + chr2_2:58524449-58524468 Msa0260730:CDS 50.0%
CTCCTGGTGAACACCAAAAC+CGG + chr2_2:58524589-58524608 Msa0260730:CDS 50.0%
CAAGGCCACATCATCACAAG+AGG + chr2_2:58524678-58524697 Msa0260730:three_prime_UTR 50.0%
ATTAACCACGGCTGTCTCCT+TGG - chr2_2:58524728-58524747 None:intergenic 50.0%
CCCTTGAGGAGGATTAACCA+CGG - chr2_2:58524740-58524759 None:intergenic 50.0%
CCGTGGTTAATCCTCCTCAA+GGG + chr2_2:58524737-58524756 Msa0260730:three_prime_UTR 50.0%
! CACTCCTTTGGAGGCTTGGA+GGG + chr2_2:58520671-58520690 Msa0260730:intron 55.0%
CTTGGAGGGATGGACCTCTA+AGG + chr2_2:58520685-58520704 Msa0260730:intron 55.0%
!! GTGGGGTATTGGTAGACTGG+TGG + chr2_2:58520852-58520871 Msa0260730:intron 55.0%
!! GGGTATTGGTAGACTGGTGG+TGG + chr2_2:58520855-58520874 Msa0260730:intron 55.0%
TTGAAGGACCATGGGCGCAT+AGG - chr2_2:58522460-58522479 None:intergenic 55.0%
TCCTGTCCCAGGTAGAAGAG+TGG + chr2_2:58523099-58523118 Msa0260730:intron 55.0%
TCCACTCTTCTACCTGGGAC+AGG - chr2_2:58523103-58523122 None:intergenic 55.0%
CTCTTGGGGCTTCGCTTTCT+TGG + chr2_2:58523221-58523240 Msa0260730:intron 55.0%
! GATATGGGGTGTCCAGTCTC+TGG - chr2_2:58523325-58523344 None:intergenic 55.0%
CCCGTCAGCATGGAAATCAC+TGG - chr2_2:58523703-58523722 None:intergenic 55.0%
AGTCTCAGCTAGCTGCAGCT+AGG + chr2_2:58524310-58524329 Msa0260730:intron 55.0%
GCTGCAGCTAGGCAAAGACA+TGG + chr2_2:58524321-58524340 Msa0260730:CDS 55.0%
! GGGGAGGTATGCTGTAACAC+AGG - chr2_2:58524510-58524529 None:intergenic 55.0%
! ATAACATGCATCGGTGGCGG+TGG - chr2_2:58524534-58524553 None:intergenic 55.0%
!!! GACCGGTTTTGGTGTTCACC+AGG - chr2_2:58524594-58524613 None:intergenic 55.0%
AATAGCCAAGGAGACAGCCG+TGG + chr2_2:58524720-58524739 Msa0260730:three_prime_UTR 55.0%
GCCGTGGTTAATCCTCCTCA+AGG + chr2_2:58524736-58524755 Msa0260730:three_prime_UTR 55.0%
! GCACTCCTTTGGAGGCTTGG+AGG + chr2_2:58520670-58520689 Msa0260730:intron 60.0%
CCATCCCTCCAAGCCTCCAA+AGG - chr2_2:58520678-58520697 None:intergenic 60.0%
! CCTTTGGAGGCTTGGAGGGA+TGG + chr2_2:58520675-58520694 Msa0260730:intron 60.0%
TTTGCGAGGGGGTGGGGTAT+TGG + chr2_2:58520841-58520860 Msa0260730:intron 60.0%
!! GGGGTGGGGTATTGGTAGAC+TGG + chr2_2:58520849-58520868 Msa0260730:intron 60.0%
CGTCTCTGAACTCCTGTCCC+AGG + chr2_2:58523088-58523107 Msa0260730:CDS 60.0%
TACCTCTCAGGGGATGCCCC+TGG + chr2_2:58521934-58521953 Msa0260730:intron 65.0%
!! AACCAGGGGCATCCCCTGAG+AGG - chr2_2:58521939-58521958 None:intergenic 65.0%
TCTCAGGGGATGCCCCTGGT+TGG + chr2_2:58521938-58521957 Msa0260730:intron 65.0%
! ACATGCATCGGTGGCGGTGG+CGG - chr2_2:58524531-58524550 None:intergenic 65.0%
! ATGCATCGGTGGCGGTGGCG+GGG - chr2_2:58524529-58524548 None:intergenic 70.0%
! CATGCATCGGTGGCGGTGGC+GGG - chr2_2:58524530-58524549 None:intergenic 70.0%
!!! CATCGGTGGCGGTGGCGGGG+AGG - chr2_2:58524526-58524545 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 58519982 58524853 58519982 ID=Msa0260730;Name=Msa0260730
chr2_2 mRNA 58519982 58524853 58519982 ID=Msa0260730-mRNA-1;Parent=Msa0260730;Name=Msa0260730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.88|0.8|1|0.88|0.9|10|194|491
chr2_2 exon 58519982 58520164 58519982 ID=Msa0260730-mRNA-1:exon:17966;Parent=Msa0260730-mRNA-1
chr2_2 exon 58520973 58521048 58520973 ID=Msa0260730-mRNA-1:exon:17967;Parent=Msa0260730-mRNA-1
chr2_2 exon 58521415 58521533 58521415 ID=Msa0260730-mRNA-1:exon:17968;Parent=Msa0260730-mRNA-1
chr2_2 exon 58521706 58521926 58521706 ID=Msa0260730-mRNA-1:exon:17969;Parent=Msa0260730-mRNA-1
chr2_2 exon 58522552 58522648 58522552 ID=Msa0260730-mRNA-1:exon:17970;Parent=Msa0260730-mRNA-1
chr2_2 exon 58522975 58523109 58522975 ID=Msa0260730-mRNA-1:exon:17971;Parent=Msa0260730-mRNA-1
chr2_2 exon 58523663 58523746 58523663 ID=Msa0260730-mRNA-1:exon:17972;Parent=Msa0260730-mRNA-1
chr2_2 exon 58523833 58523901 58523833 ID=Msa0260730-mRNA-1:exon:17973;Parent=Msa0260730-mRNA-1
chr2_2 exon 58524051 58524194 58524051 ID=Msa0260730-mRNA-1:exon:17974;Parent=Msa0260730-mRNA-1
chr2_2 exon 58524312 58524853 58524312 ID=Msa0260730-mRNA-1:exon:17975;Parent=Msa0260730-mRNA-1
chr2_2 CDS 58519982 58520164 58519982 ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1
chr2_2 CDS 58520973 58521048 58520973 ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1
chr2_2 CDS 58521415 58521533 58521415 ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1
chr2_2 CDS 58521706 58521926 58521706 ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1
chr2_2 CDS 58522552 58522648 58522552 ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1
chr2_2 CDS 58522975 58523109 58522975 ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1
chr2_2 CDS 58523663 58523746 58523663 ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1
chr2_2 CDS 58523833 58523901 58523833 ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1
chr2_2 CDS 58524051 58524194 58524051 ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1
chr2_2 CDS 58524312 58524659 58524312 ID=Msa0260730-mRNA-1:cds;Parent=Msa0260730-mRNA-1
chr2_2 three_prime_UTR 58524660 58524853 58524660 ID=Msa0260730-mRNA-1:three_prime_utr;Parent=Msa0260730-mRNA-1
Gene Sequence

>Msa0260730

GTTTTTGCAAGACAAGGCATGATCCAACATCACATTCATCAAATGGCAACATTTGTGCCAAATCTGATCAGTTTTCTACCTAAGGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAATTGGTGGAGTTGCTTTGTCTCAACCTGACTGTTCATTCGATATGGCCATAGACCTTGCAGCTGTTACTACAGTTTTACTGGAGGCACACCCCTCTTTAACAAGATCGGATAGTAGAGAAAATTCTATGATTGCTGAGGATGATATGACTGGCGATGATGAAGTCATGGAAGTAGCTCTGGATAGGAAATTGGATCAACAAATTTGTAATTCTATAGATACTCGCTTCCTTCTGCAACTGACAAATATATTATTCAGAGATATTTCAGCTGCCAATGGGCTAGATGATATGGAGGTTGCAGCTATTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTGAACACTTTGCCACTTGAAAGTATTATGACTGTTCTCGCCTACAGAACTGACCTTGTTCCTATACTTTGGAAATTTATGAAACGGTGCCAAGAGAATAAAAAATGGTCATCTTTGTCTAAGCGGCATATGCTTATGATGGTTGGTAATGAGAAATTTTATGAGCAGGAGAAACCCCTATCACTGAAGGATATGAGCAGCCTCATCATTCTATTGAAGCAGGCTCTGTGGCAGCTACTGCATACCTCATTTGCTAATTCAGTTAGATCTATTCCAGTTAGGACAAGCAGTACAAAGCTGTCTATTGAAGCCATTCAACAAAGGGTTAGCATAGTCGTCTCTGAACTCCTGTCCCAGCTCCACGATTGGAACAACAGACGACAGTTTACATCCCCCAGTGATTTCCATGCTGACGGGGTTAATCAATTTTTCATATCTCAGGCTTCTATAGCAAATACACGAGCAAATAAAATTGTAAAGAAGGCCCCTTTCCTGATACCACCTGCAAAGCCTCAACAAGCTGCATTTAGGCAAACACATGGATCTCACTCTGTAGCTGCAGTTAGGCAAACACATGGATCTCGGTCTTCCATTTTTAGAAAGCAGTTCAGAACAAGGCGTGATCATATTTCGGAAGATGCTTATAATTCAAAGTCTCAGCTAGCTGCAGCTAGGCAAAGACATGGATCTCAGACTGTATTTACTGGAAATCGGTTCATGGCAAGGTATGATCATATTTTGGAAGATTCTGTTGAACAGTCCATTGTAAGGCAAGTACATGAAGGATCAGAAAGGATTGACACTCCCGTGATGGTTCAGCATCATGAAGAGAACTCTCCAATCTTGGAACCTGTGTTACAGCATACCTCCCCGCCACCGCCACCGATGCATGTTATGAATGTTGAGAATGATGACCCACAACATGAAACTTCTCCTGGTGAACACCAAAACCGGTCAAACATTCTTGATGAACCGAATGTTGAAACATATGAGGATGCCTGA

Protein sequence

>Msa0260730

VFARQGMIQHHIHQMATFVPNLISFLPKDISDEFPTYACLLGNILEIGGVALSQPDCSFDMAIDLAAVTTVLLEAHPSLTRSDSRENSMIAEDDMTGDDEVMEVALDRKLDQQICNSIDTRFLLQLTNILFRDISAANGLDDMEVAAIGAVCGFLYVILNTLPLESIMTVLAYRTDLVPILWKFMKRCQENKKWSSLSKRHMLMMVGNEKFYEQEKPLSLKDMSSLIILLKQALWQLLHTSFANSVRSIPVRTSSTKLSIEAIQQRVSIVVSELLSQLHDWNNRRQFTSPSDFHADGVNQFFISQASIANTRANKIVKKAPFLIPPAKPQQAAFRQTHGSHSVAAVRQTHGSRSSIFRKQFRTRRDHISEDAYNSKSQLAAARQRHGSQTVFTGNRFMARYDHILEDSVEQSIVRQVHEGSERIDTPVMVQHHEENSPILEPVLQHTSPPPPPMHVMNVENDDPQHETSPGEHQNRSNILDEPNVETYEDA*