AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0262080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262080 MtrunA17_Chr2g0324441 98.372 430 7 0 1 430 1 430 0.0 887
Msa0262080 MtrunA17_Chr4g0040121 70.766 431 122 3 1 430 1 428 0.0 633
Msa0262080 MtrunA17_Chr8g0334501 46.565 393 207 2 21 413 43 432 1.38e-132 389
Msa0262080 MtrunA17_Chr7g0245051 47.632 380 196 2 34 413 53 429 1.66e-131 386
Msa0262080 MtrunA17_Chr7g0245101 47.105 380 198 2 34 413 54 430 2.11e-130 384
Msa0262080 MtrunA17_Chr5g0404601 47.326 374 193 2 39 412 30 399 1.05e-128 379
Msa0262080 MtrunA17_Chr4g0020521 43.939 396 212 4 21 412 11 400 8.10e-126 370
Msa0262080 MtrunA17_Chr7g0271511 45.789 380 197 4 37 416 59 429 1.03e-123 365
Msa0262080 MtrunA17_Chr1g0193611 44.591 379 203 4 39 416 31 403 1.63e-121 359
Msa0262080 MtrunA17_Chr1g0193531 44.737 380 204 4 37 416 26 399 3.93e-121 358
Msa0262080 MtrunA17_Chr1g0193601 44.180 378 206 3 39 416 31 403 1.84e-119 353
Msa0262080 MtrunA17_Chr3g0141751 43.799 379 202 5 40 416 26 395 2.21e-119 353
Msa0262080 MtrunA17_Chr1g0193551 41.019 412 228 6 12 416 1 404 7.19e-116 345
Msa0262080 MtrunA17_Chr1g0193541 38.845 381 191 5 38 416 29 369 3.00e-91 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262080 AT2G20680.1 68.193 415 130 1 3 417 5 417 0.0 605
Msa0262080 AT4G28320.1 66.667 420 136 2 11 430 12 427 0.0 583
Msa0262080 AT5G01930.1 46.719 381 198 3 33 413 42 417 5.27e-128 377
Msa0262080 AT5G66460.1 45.722 374 197 3 39 412 30 397 2.53e-122 362
Msa0262080 AT3G10900.1 42.105 399 225 5 17 413 6 400 4.22e-122 361
Msa0262080 AT3G10890.1 42.257 381 213 5 39 417 30 405 1.65e-116 347
Msa0262080 AT1G02310.1 42.338 385 208 6 37 416 26 401 9.53e-111 332
Msa0262080 AT1G02310.2 42.338 385 208 6 37 416 46 421 1.73e-110 332
Msa0262080 AT3G30540.1 36.565 361 187 5 17 376 6 325 1.73e-84 262

Find 124 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAAAACTGGGGCTAATA+TGG 0.184464 2_2:-60761891 Msa0262080:CDS
GAAATCAATATCAGAGATTT+TGG 0.195187 2_2:+60758646 None:intergenic
TGACCGTCAACCCCAATTAT+TGG 0.222691 2_2:-60758703 Msa0262080:CDS
AAGTCTGGATGCCCAATAAT+TGG 0.233607 2_2:+60758691 None:intergenic
AGGAAAGTTGAATTATTTAT+AGG 0.245976 2_2:+60762482 None:intergenic
AAAAGAAGCAAAACCCAAAA+TGG 0.248452 2_2:+60762105 None:intergenic
AATCATTCCAAATCGAAATT+AGG 0.273695 2_2:+60757783 None:intergenic
GAGGAATATTCTGATGATTA+TGG 0.283488 2_2:-60758023 Msa0262080:CDS
TGAATGGGTGGAATTCTTAT+TGG 0.297092 2_2:-60761964 Msa0262080:CDS
GTAGTAATGAGAAAATAATT+AGG 0.307860 2_2:+60762462 None:intergenic
TCATTAAAGTTAGTGTCTTT+TGG 0.308669 2_2:-60762374 Msa0262080:five_prime_UTR
GACCGTCAACCCCAATTATT+GGG 0.317018 2_2:-60758702 Msa0262080:CDS
TAGTTTGGCAATTCTTAGTT+GGG 0.322364 2_2:-60758052 Msa0262080:CDS
GTCATTTCTATATTCAATTC+CGG 0.324364 2_2:+60759246 None:intergenic
GTTCGTCAAATGCTGAAAAC+TGG 0.331006 2_2:-60761902 Msa0262080:CDS
GCAATATCCTAATTTCGATT+TGG 0.338488 2_2:-60757790 Msa0262080:three_prime_UTR
TTGAAATAACTACGGATTGA+TGG 0.340488 2_2:+60760401 None:intergenic
CTGGAGCAGGCGCTTTAGTT+TGG 0.343911 2_2:-60758067 Msa0262080:CDS
TTAGTTTGGCAATTCTTAGT+TGG 0.347632 2_2:-60758053 Msa0262080:CDS
GGGTTGACGGTCAAATCCTT+TGG 0.352850 2_2:+60758713 None:intergenic
TACAGTATGGAATAGATATC+TGG 0.360245 2_2:-60757853 Msa0262080:three_prime_UTR
GTGGAATTCTTATTGGTTGA+TGG 0.368784 2_2:-60761957 Msa0262080:CDS
GTCAAATCCTTTGGGTCATT+AGG 0.369609 2_2:+60758722 None:intergenic
GATTTAAGTGACTACACATT+GGG 0.373083 2_2:-60757820 Msa0262080:three_prime_UTR
AGTCTGGATGCCCAATAATT+GGG 0.376159 2_2:+60758692 None:intergenic
TTTGAAGAAGGGAGAGAAAT+GGG 0.376956 2_2:-60762040 Msa0262080:CDS
AAGCAAGGCAAAATGGAATA+AGG 0.383619 2_2:-60760541 Msa0262080:CDS
GAGATAATGTTTGCAGGAAA+TGG 0.389136 2_2:-60762139 Msa0262080:exon
GGTCGGATACAGTGAAGTTC+TGG 0.391879 2_2:+60758150 None:intergenic
ACTAGTTTAGTGACCCTTTG+AGG 0.392458 2_2:-60762209 Msa0262080:five_prime_UTR
ATACAAAATAGTTATTCATC+TGG 0.402153 2_2:-60757523 Msa0262080:three_prime_UTR
CCGGTCCTGTTCTCCGAATA+CGG 0.405166 2_2:-60758188 Msa0262080:CDS
TATAAAACAGTCATGCAGAT+TGG 0.406700 2_2:-60757961 Msa0262080:CDS
GGTTGACGGTCAAATCCTTT+GGG 0.409738 2_2:+60758714 None:intergenic
GACTCACTGTTTGTAGAACT+TGG 0.410613 2_2:-60761868 Msa0262080:CDS
GTAAATAACTTGCAACCATA+TGG 0.414901 2_2:-60760503 Msa0262080:CDS
AGCAATGCTTACCATTGATC+CGG 0.418166 2_2:+60758605 None:intergenic
CATTCCCCACGGTCAGCATA+TGG 0.420083 2_2:+60758759 None:intergenic
ATAGCAGAAGCAAGGCAAAA+TGG 0.422959 2_2:-60760548 Msa0262080:CDS
TGTTGTGAGATAATGTTTGC+AGG 0.428403 2_2:-60762145 Msa0262080:exon
ATAAAACAGTCATGCAGATT+GGG 0.432170 2_2:-60757960 Msa0262080:CDS
GATATAATCAGACCCAAGTC+TGG 0.436740 2_2:+60758676 None:intergenic
ATAATCCGTATTCGGAGAAC+AGG 0.448568 2_2:+60758183 None:intergenic
AGAACTTGGGCTTTCAATGA+TGG 0.449779 2_2:-60761854 Msa0262080:CDS
TACTGACTCTTCCCACCATA+TGG 0.450859 2_2:+60760488 None:intergenic
TCAAATGGGCATGGCAAGAA+GGG 0.452269 2_2:-60760463 Msa0262080:CDS
AATTATTGGGCATCCAGACT+TGG 0.454898 2_2:-60758689 Msa0262080:CDS
ATCATAGAAGAACGAATCAT+TGG 0.455387 2_2:+60760424 None:intergenic
TGTGTTGATCGACTTTCCGC+TGG 0.459954 2_2:+60757993 None:intergenic
ATGCTGACCGTGGGGAATGA+AGG 0.467308 2_2:-60758755 Msa0262080:CDS
ACACAGCTCGGTGAGATGAT+AGG 0.468437 2_2:+60757571 None:intergenic
CATCTGGTTTCAATTCAGTC+AGG 0.475848 2_2:-60757507 Msa0262080:three_prime_UTR
TTCGTCAAATGCTGAAAACT+GGG 0.478082 2_2:-60761901 Msa0262080:CDS
TAGATCTCTCTCTTAGAACT+TGG 0.483874 2_2:+60762335 None:intergenic
CTGAAAACTGGGGCTAATAT+GGG 0.484284 2_2:-60761890 Msa0262080:CDS
GGAAGAGTCAGTATGTCAAA+TGG 0.484963 2_2:-60760478 Msa0262080:CDS
GACTTGGGTCTGATTATATC+CGG 0.485591 2_2:-60758673 Msa0262080:CDS
TTCATATCTACCCGGATCAA+TGG 0.488013 2_2:-60758616 Msa0262080:intron
AACTGAAATTTGTCAACAAG+TGG 0.489345 2_2:-60758253 Msa0262080:CDS
TCTGCTAAGAGAAACAAGTC+TGG 0.492117 2_2:-60758086 Msa0262080:CDS
GTCAAATGGGCATGGCAAGA+AGG 0.494866 2_2:-60760464 Msa0262080:CDS
ATGCTTTCCCACATTGAAGA+TGG 0.497123 2_2:-60758230 Msa0262080:CDS
ACTCACTGTTTGTAGAACTT+GGG 0.499364 2_2:-60761867 Msa0262080:CDS
AAAGAAGCAAAACCCAAAAT+GGG 0.501043 2_2:+60762106 None:intergenic
CGTTGCATGACTGATCGTTC+CGG 0.503031 2_2:-60759187 Msa0262080:CDS
TGCCCAATAATTGGGGTTGA+CGG 0.509521 2_2:+60758700 None:intergenic
GCAAGTTATTTACTAAGCAA+AGG 0.522679 2_2:+60760513 None:intergenic
GGGACACAGTTTGTGTTGGA+TGG 0.524754 2_2:-60762001 Msa0262080:CDS
ATTATTGGGCATCCAGACTT+GGG 0.530301 2_2:-60758688 Msa0262080:CDS
TTTCCTGCAGGAGTGGATAG+AGG 0.531846 2_2:-60758816 Msa0262080:intron
TGTAATTCTTGAAATAACTA+CGG 0.536027 2_2:+60760393 None:intergenic
ATCATCTCACCGAGCTGTGT+TGG 0.536268 2_2:-60757568 Msa0262080:three_prime_UTR
AAGAGAAACAAGTCTGGAGC+AGG 0.538235 2_2:-60758080 Msa0262080:CDS
GAAGAGTCAGTATGTCAAAT+GGG 0.540890 2_2:-60760477 Msa0262080:CDS
CACCTCAGTTCATATCTACC+CGG 0.542770 2_2:-60758624 Msa0262080:CDS
TGATTTAAGTGACTACACAT+TGG 0.544263 2_2:-60757821 Msa0262080:three_prime_UTR
ACTTACTTGGAGAGTGTCGC+CGG 0.545828 2_2:+60759168 None:intergenic
TGTTTGAGTAATTGAGTGTG+AGG 0.546992 2_2:-60762255 Msa0262080:five_prime_UTR
GATTGGGCAAAGCGAAGGGA+TGG 0.552832 2_2:-60757944 Msa0262080:CDS
TAAGAATGAGGAAATGATTG+AGG 0.558383 2_2:+60762513 None:intergenic
AAAGAGTGAAGCAAATAAAG+AGG 0.558705 2_2:-60762697 None:intergenic
AATAACTTGCAACCATATGG+TGG 0.566863 2_2:-60760500 Msa0262080:CDS
ATGCAGATTGGGCAAAGCGA+AGG 0.567084 2_2:-60757949 Msa0262080:CDS
TTATGGTCCTAATGACCCAA+AGG 0.573542 2_2:-60758729 Msa0262080:CDS
TTATTTCAAGAATTACATCA+AGG 0.573575 2_2:-60760387 Msa0262080:intron
TTCTGCAGACTGTCTTGACA+AGG 0.576048 2_2:-60759282 Msa0262080:intron
GTCAGTATGTCAAATGGGCA+TGG 0.579900 2_2:-60760472 Msa0262080:CDS
AATGCTCTTCAAATTTCACC+TGG 0.579990 2_2:-60761824 Msa0262080:CDS
GAGTGAAGCAAATAAAGAGG+TGG 0.580198 2_2:-60762694 None:intergenic
GTGTTGATCGACTTTCCGCT+GGG 0.580201 2_2:+60757994 None:intergenic
GTTTGGCAATTCTTAGTTGG+GGG 0.582836 2_2:-60758050 Msa0262080:CDS
TGGGCATGGCAAGAAGGGGT+AGG 0.584409 2_2:-60760458 Msa0262080:CDS
TTGTAATTACCAACACAGCT+CGG 0.584777 2_2:+60757559 None:intergenic
AAATGGGACACAGTTTGTGT+TGG 0.586472 2_2:-60762005 Msa0262080:CDS
ATAGAAGAACGAATCATTGG+AGG 0.587282 2_2:+60760427 None:intergenic
GCAATGCTTACCATTGATCC+GGG 0.587323 2_2:+60758606 None:intergenic
AAATTTGTACTGAATGAAGA+AGG 0.588806 2_2:+60762655 None:intergenic
TAGGTGAACAACTAAGAATG+AGG 0.589645 2_2:+60762501 None:intergenic
TGCAGATTGGGCAAAGCGAA+GGG 0.590290 2_2:-60757948 Msa0262080:CDS
AGTTTGGCAATTCTTAGTTG+GGG 0.590382 2_2:-60758051 Msa0262080:CDS
CCGTATTCGGAGAACAGGAC+CGG 0.591091 2_2:+60758188 None:intergenic
AGTGAAGCAAATAAAGAGGT+GGG 0.592941 2_2:-60762693 None:intergenic
TTCATCGCCATCTTCAATGT+GGG 0.596395 2_2:+60758223 None:intergenic
GGACACAGTTTGTGTTGGAT+GGG 0.598899 2_2:-60762000 Msa0262080:CDS
GTCTGGATGCCCAATAATTG+GGG 0.607898 2_2:+60758693 None:intergenic
CGATGAAGTACTGAAGAAGC+CGG 0.608266 2_2:-60758207 Msa0262080:CDS
AAGAACCATATGCTGACCGT+GGG 0.609672 2_2:-60758764 Msa0262080:CDS
ATAACTTGCAACCATATGGT+GGG 0.615616 2_2:-60760499 Msa0262080:CDS
CTTCATCGCCATCTTCAATG+TGG 0.618456 2_2:+60758222 None:intergenic
ACTTGTTCATCAAAGTGACC+AGG 0.634282 2_2:+60761806 None:intergenic
GGAGTGGATAGAGGAAATGT+CGG 0.641246 2_2:-60758807 Msa0262080:CDS
TAGAAGTGAAACCGACGGTG+TGG 0.650208 2_2:+60762631 None:intergenic
ATTACGTCATAGCAGAAGCA+AGG 0.656346 2_2:-60760556 Msa0262080:CDS
CAAATGGGCATGGCAAGAAG+GGG 0.658594 2_2:-60760462 Msa0262080:CDS
ATTTAAGTGACTACACATTG+GGG 0.670111 2_2:-60757819 Msa0262080:three_prime_UTR
ATAAAAGCCTTCATTCCCCA+CGG 0.670702 2_2:+60758748 None:intergenic
CAAGAACCATATGCTGACCG+TGG 0.671483 2_2:-60758765 Msa0262080:CDS
TGAGTTAGAAGTGAAACCGA+CGG 0.677252 2_2:+60762626 None:intergenic
TCGTCAAATGCTGAAAACTG+GGG 0.702936 2_2:-60761900 Msa0262080:CDS
ATCCGGGTAGATATGAACTG+AGG 0.729379 2_2:+60758622 None:intergenic
TGATTATGGAATCGTCCCAG+CGG 0.733894 2_2:-60758009 Msa0262080:CDS
GATTAGTTGAGTGTATAGTG+TGG 0.740109 2_2:-60757764 Msa0262080:three_prime_UTR
GAACGATCAGTCATGCAACG+AGG 0.746364 2_2:+60759190 None:intergenic
AGAACCATATGCTGACCGTG+GGG 0.750263 2_2:-60758763 Msa0262080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTGTTTAGTATAATAA+TGG - chr2_2:60758662-60758681 Msa0262080:CDS 10.0%
!! GTGAAATATATAATAAAATA+AGG - chr2_2:60761285-60761304 Msa0262080:intron 10.0%
!! AATAAAATCTATTAGAAAAA+TGG - chr2_2:60762501-60762520 Msa0262080:five_prime_UTR 10.0%
!! ATTATTATTATCCTCAAAAA+TGG + chr2_2:60757558-60757577 None:intergenic 15.0%
!! AAAATTAAGTACTTGAAATT+TGG + chr2_2:60759254-60759273 None:intergenic 15.0%
!! TTTCTATTCTTCAAAAATAA+TGG + chr2_2:60759524-60759543 None:intergenic 15.0%
!!! ATTTAATAATACTTTTGTAC+TGG - chr2_2:60759957-60759976 Msa0262080:intron 15.0%
!!! TTTTTCTATAAACATTTGAA+GGG + chr2_2:60761013-60761032 None:intergenic 15.0%
!! TAGAAAAAATGGATAAAATT+TGG + chr2_2:60761231-60761250 None:intergenic 15.0%
!! TCAATATCAAATAGAAAAAA+TGG + chr2_2:60761242-60761261 None:intergenic 15.0%
!! TTATTATATATTTCACAACA+TGG + chr2_2:60761281-60761300 None:intergenic 15.0%
!!! TTAATTATAACTTTTTGCAT+AGG - chr2_2:60761831-60761850 Msa0262080:CDS 15.0%
!! AGGAAAGTTGAATTATTTAT+AGG + chr2_2:60757659-60757678 None:intergenic 20.0%
!! GTAGTAATGAGAAAATAATT+AGG + chr2_2:60757679-60757698 None:intergenic 20.0%
!!! CTTCTCTTAATACATTTTTT+TGG - chr2_2:60757719-60757738 Msa0262080:three_prime_UTR 20.0%
!!! AAAAACCAAACTTTTTTTTC+TGG - chr2_2:60757852-60757871 Msa0262080:three_prime_UTR 20.0%
!!! AAAACCAAACTTTTTTTTCT+GGG - chr2_2:60757853-60757872 Msa0262080:three_prime_UTR 20.0%
!!! GTTTTTATTTACATGTCTTT+TGG - chr2_2:60758059-60758078 Msa0262080:CDS 20.0%
!!! CATAAAAAACTAATTTGTGT+CGG + chr2_2:60758485-60758504 None:intergenic 20.0%
!!! TGACATGTTTTTTGTTTTTT+GGG - chr2_2:60758511-60758530 Msa0262080:intron 20.0%
!! TACTAAACAATTATAATCAC+AGG + chr2_2:60758656-60758675 None:intergenic 20.0%
!! AAGTAAAACATAAATCTCTA+AGG + chr2_2:60759293-60759312 None:intergenic 20.0%
!!! AGATTTTTTTTTTTATGACC+AGG + chr2_2:60759405-60759424 None:intergenic 20.0%
!! TGTAATTCTTGAAATAACTA+CGG + chr2_2:60759748-60759767 None:intergenic 20.0%
!! TTATTTCAAGAATTACATCA+AGG - chr2_2:60759751-60759770 Msa0262080:intron 20.0%
!! TTATTATTCTTAAACTCAGT+AGG - chr2_2:60759988-60760007 Msa0262080:intron 20.0%
!!! ATACTTCTTTTACTCAATAA+AGG - chr2_2:60760420-60760439 Msa0262080:CDS 20.0%
!!! CTTTTTCTATAAACATTTGA+AGG + chr2_2:60761014-60761033 None:intergenic 20.0%
!! ATACAAAATAGTTATTCATC+TGG - chr2_2:60762615-60762634 Msa0262080:five_prime_UTR 20.0%
! AAATTTGTACTGAATGAAGA+AGG + chr2_2:60757486-60757505 None:intergenic 25.0%
! TCAAAAATGGACAAAATTAG+CGG + chr2_2:60757545-60757564 None:intergenic 25.0%
!! TCATTAAAGTTAGTGTCTTT+TGG - chr2_2:60757764-60757783 Msa0262080:three_prime_UTR 25.0%
!!! CTTTTGATTTTTTCCTCAAA+GGG + chr2_2:60757945-60757964 None:intergenic 25.0%
!! CTTTGAGGAAAAAATCAAAA+GGG - chr2_2:60757944-60757963 Msa0262080:CDS 25.0%
!! TTTATTTACATGTCTTTTGG+AGG - chr2_2:60758062-60758081 Msa0262080:CDS 25.0%
!! TTATTTACATGTCTTTTGGA+GGG - chr2_2:60758063-60758082 Msa0262080:CDS 25.0%
!!! TTAAGGTTTAGTTTTGAAGA+AGG - chr2_2:60758086-60758105 Msa0262080:CDS 25.0%
!!! TAAGGTTTAGTTTTGAAGAA+GGG - chr2_2:60758087-60758106 Msa0262080:CDS 25.0%
! ACATAATCAGAACAAATCAT+AGG + chr2_2:60758426-60758445 None:intergenic 25.0%
! AACAACATGAAACAATGAAA+GGG + chr2_2:60758458-60758477 None:intergenic 25.0%
!!! GTGACATGTTTTTTGTTTTT+TGG - chr2_2:60758510-60758529 Msa0262080:intron 25.0%
! TATAATAATGGTATCTTGCT+GGG - chr2_2:60758674-60758693 Msa0262080:CDS 25.0%
! AGATACCTAGTTTATTAGTT+TGG + chr2_2:60758710-60758729 None:intergenic 25.0%
!! AATAAACTAGGTATCTTTTG+TGG - chr2_2:60758714-60758733 Msa0262080:CDS 25.0%
!! TACCTAGTAAACACAATTTT+AGG + chr2_2:60759094-60759113 None:intergenic 25.0%
! AAAACTTTCTTTCCTTCAAT+CGG + chr2_2:60759444-60759463 None:intergenic 25.0%
! ATAGAAATTATGCTGAACTA+AGG - chr2_2:60759537-60759556 Msa0262080:intron 25.0%
!! CTGACATAATGACTTTAAAA+AGG + chr2_2:60759893-60759912 None:intergenic 25.0%
! AGTTATCATACGACAATTAA+AGG + chr2_2:60759933-60759952 None:intergenic 25.0%
! GAAGATTGAATCAAATATAC+AGG - chr2_2:60760146-60760165 Msa0262080:intron 25.0%
!! AAAACTTGTTTCCTTAAGTA+AGG + chr2_2:60760347-60760366 None:intergenic 25.0%
!! TTACTTAAGGAAACAAGTTT+TGG - chr2_2:60760346-60760365 Msa0262080:intron 25.0%
! TCAATGAAGCTTGAAAAATA+AGG + chr2_2:60760557-60760576 None:intergenic 25.0%
! GTCATTTCTATATTCAATTC+CGG + chr2_2:60760895-60760914 None:intergenic 25.0%
!! GAAATCAATATCAGAGATTT+TGG + chr2_2:60761495-60761514 None:intergenic 25.0%
! AGAAGTAAGAAAAGGTTATA+AGG - chr2_2:60761708-60761727 Msa0262080:intron 25.0%
! GAAGTAAGAAAAGGTTATAA+GGG - chr2_2:60761709-60761728 Msa0262080:intron 25.0%
!!! CTTTTTTGATAATCCGTATT+CGG + chr2_2:60761966-60761985 None:intergenic 25.0%
!! TTGTTTCATACATCTTTTCT+CGG + chr2_2:60762012-60762031 None:intergenic 25.0%
! TTTGTTAGCAAAAAAAGAAG+TGG - chr2_2:60762248-60762267 Msa0262080:five_prime_UTR 25.0%
! AAAAAAAGTTGACTACAGTA+TGG - chr2_2:60762272-60762291 Msa0262080:five_prime_UTR 25.0%
! AATCATTCCAAATCGAAATT+AGG + chr2_2:60762358-60762377 None:intergenic 25.0%
!! GCTAATTTTGTCCATTTTTG+AGG - chr2_2:60757544-60757563 Msa0262080:three_prime_UTR 30.0%
TAAGAATGAGGAAATGATTG+AGG + chr2_2:60757628-60757647 None:intergenic 30.0%
!! ATCTAGACATTTTAGCCAAT+TGG - chr2_2:60757821-60757840 Msa0262080:three_prime_UTR 30.0%
!! TCTAGACATTTTAGCCAATT+GGG - chr2_2:60757822-60757841 Msa0262080:three_prime_UTR 30.0%
CAAACCCAGAAAAAAAAGTT+TGG + chr2_2:60757860-60757879 None:intergenic 30.0%
!!! AACTTTTTTTTCTGGGTTTG+TGG - chr2_2:60757860-60757879 Msa0262080:three_prime_UTR 30.0%
!!! CCTTTTGATTTTTTCCTCAA+AGG + chr2_2:60757946-60757965 None:intergenic 30.0%
! CCTTTGAGGAAAAAATCAAA+AGG - chr2_2:60757943-60757962 Msa0262080:CDS 30.0%
!! TGGATTGTTTTATCCCATTT+TGG - chr2_2:60758019-60758038 Msa0262080:CDS 30.0%
!! GGATTGTTTTATCCCATTTT+GGG - chr2_2:60758020-60758039 Msa0262080:CDS 30.0%
AAAGAAGCAAAACCCAAAAT+GGG + chr2_2:60758035-60758054 None:intergenic 30.0%
AAAAGAAGCAAAACCCAAAA+TGG + chr2_2:60758036-60758055 None:intergenic 30.0%
! GGAATGTGTTTTATGTGAAT+GGG - chr2_2:60758159-60758178 Msa0262080:CDS 30.0%
! CTTTGATGAACAAGTTTTTC+AGG - chr2_2:60758340-60758359 Msa0262080:intron 30.0%
CAACAACATGAAACAATGAA+AGG + chr2_2:60758459-60758478 None:intergenic 30.0%
! TGCACTCTTTTCCTAAAATT+GGG - chr2_2:60758574-60758593 Msa0262080:intron 30.0%
GTATAATAATGGTATCTTGC+TGG - chr2_2:60758673-60758692 Msa0262080:CDS 30.0%
AGTTATGTACTTGTTCCTTT+AGG - chr2_2:60758781-60758800 Msa0262080:CDS 30.0%
GTTATGTACTTGTTCCTTTA+GGG - chr2_2:60758782-60758801 Msa0262080:CDS 30.0%
! TTAACCATTTTCAACCCTAA+AGG + chr2_2:60758799-60758818 None:intergenic 30.0%
GTTGAAAATGGTTAAGTTCA+TGG - chr2_2:60758804-60758823 Msa0262080:CDS 30.0%
GACATGTACTTAGTTAATTG+AGG - chr2_2:60758951-60758970 Msa0262080:intron 30.0%
CTCCTAAAATTGTGTTTACT+AGG - chr2_2:60759089-60759108 Msa0262080:intron 30.0%
AATTGTGTTTACTAGGTAGA+TGG - chr2_2:60759096-60759115 Msa0262080:intron 30.0%
TTATGACCAGGAATTGAAAT+CGG + chr2_2:60759393-60759412 None:intergenic 30.0%
AAACTTTCTTTCCTTCAATC+GGG + chr2_2:60759443-60759462 None:intergenic 30.0%
AATTATGCTGAACTAAGGAT+TGG - chr2_2:60759542-60759561 Msa0262080:intron 30.0%
GCAAGTTATTTACTAAGCAA+AGG + chr2_2:60759628-60759647 None:intergenic 30.0%
! GTAAATAACTTGCAACCATA+TGG - chr2_2:60759635-60759654 Msa0262080:intron 30.0%
ATCATAGAAGAACGAATCAT+TGG + chr2_2:60759717-60759736 None:intergenic 30.0%
! TTGAAATAACTACGGATTGA+TGG + chr2_2:60759740-60759759 None:intergenic 30.0%
! AATTAAAGGCATACAACATG+TGG + chr2_2:60759919-60759938 None:intergenic 30.0%
AACTCCTATGTCAGATAAAA+TGG + chr2_2:60760094-60760113 None:intergenic 30.0%
! GAATCAAATATACAGGCTTT+TGG - chr2_2:60760153-60760172 Msa0262080:intron 30.0%
TATGACCTAAACGGTAAAAA+AGG + chr2_2:60760200-60760219 None:intergenic 30.0%
AATAAAGGAGTAGTGAGAAA+GGG - chr2_2:60760435-60760454 Msa0262080:CDS 30.0%
ATACGTAAGAAAACAGAAAG+TGG + chr2_2:60760620-60760639 None:intergenic 30.0%
ATGAAGAAGAAATTTGACCT+AGG + chr2_2:60760727-60760746 None:intergenic 30.0%
ACAAGGAAAAATTCTTTCAC+CGG - chr2_2:60760873-60760892 Msa0262080:intron 30.0%
TTCTATAAACATTTGAAGGG+TGG + chr2_2:60761010-60761029 None:intergenic 30.0%
! GAACTTTTTAATCTCCTCAT+GGG + chr2_2:60761087-60761106 None:intergenic 30.0%
! TGAACTTTTTAATCTCCTCA+TGG + chr2_2:60761088-60761107 None:intergenic 30.0%
! AATTTTGCCATATTCAGTTG+TGG + chr2_2:60761168-60761187 None:intergenic 30.0%
ACAACTGAATATGGCAAAAT+TGG - chr2_2:60761167-60761186 Msa0262080:intron 30.0%
AGCATTGCTTGAACTTTATA+AGG - chr2_2:60761547-60761566 Msa0262080:intron 30.0%
TCATTTATGCTCAAAGTCAT+TGG - chr2_2:60761591-60761610 Msa0262080:intron 30.0%
CATTTATGCTCAAAGTCATT+GGG - chr2_2:60761592-60761611 Msa0262080:intron 30.0%
CAAAATTTCCACTATGAGTA+GGG - chr2_2:60761622-60761641 Msa0262080:intron 30.0%
! TAGGGTAAAAGTATGTGTTA+TGG - chr2_2:60761640-60761659 Msa0262080:intron 30.0%
! AGGGTAAAAGTATGTGTTAT+GGG - chr2_2:60761641-60761660 Msa0262080:intron 30.0%
! AAAAGTATGTGTTATGGGTA+TGG - chr2_2:60761646-60761665 Msa0262080:intron 30.0%
AAAGTATGTGTTATGGGTAT+GGG - chr2_2:60761647-60761666 Msa0262080:intron 30.0%
! TTCCCTTTTAGATTTGTCTT+CGG - chr2_2:60761793-60761812 Msa0262080:intron 30.0%
AACTGAAATTTGTCAACAAG+TGG - chr2_2:60761885-60761904 Msa0262080:CDS 30.0%
! TTAGTTTGGCAATTCTTAGT+TGG - chr2_2:60762085-60762104 Msa0262080:CDS 30.0%
TAGTTTGGCAATTCTTAGTT+GGG - chr2_2:60762086-60762105 Msa0262080:CDS 30.0%
GAGGAATATTCTGATGATTA+TGG - chr2_2:60762115-60762134 Msa0262080:CDS 30.0%
TATAAAACAGTCATGCAGAT+TGG - chr2_2:60762177-60762196 Msa0262080:five_prime_UTR 30.0%
ATAAAACAGTCATGCAGATT+GGG - chr2_2:60762178-60762197 Msa0262080:five_prime_UTR 30.0%
TACAGTATGGAATAGATATC+TGG - chr2_2:60762285-60762304 Msa0262080:five_prime_UTR 30.0%
TGATTTAAGTGACTACACAT+TGG - chr2_2:60762317-60762336 Msa0262080:five_prime_UTR 30.0%
GATTTAAGTGACTACACATT+GGG - chr2_2:60762318-60762337 Msa0262080:five_prime_UTR 30.0%
ATTTAAGTGACTACACATTG+GGG - chr2_2:60762319-60762338 Msa0262080:five_prime_UTR 30.0%
GCAATATCCTAATTTCGATT+TGG - chr2_2:60762348-60762367 Msa0262080:five_prime_UTR 30.0%
! TGCTTCTTTTCACTTCTTTG+AGG - chr2_2:60757585-60757604 Msa0262080:three_prime_UTR 35.0%
TAGGTGAACAACTAAGAATG+AGG + chr2_2:60757640-60757659 None:intergenic 35.0%
TAGATCTCTCTCTTAGAACT+TGG + chr2_2:60757806-60757825 None:intergenic 35.0%
!!! GGTTTTTTTGACAACCCAAT+TGG + chr2_2:60757839-60757858 None:intergenic 35.0%
TGTTTGAGTAATTGAGTGTG+AGG - chr2_2:60757883-60757902 Msa0262080:three_prime_UTR 35.0%
TGTTGTGAGATAATGTTTGC+AGG - chr2_2:60757993-60758012 Msa0262080:CDS 35.0%
GAGATAATGTTTGCAGGAAA+TGG - chr2_2:60757999-60758018 Msa0262080:CDS 35.0%
!! TTTGGGTTTTGCTTCTTTTG+TGG - chr2_2:60758037-60758056 Msa0262080:CDS 35.0%
!! TTTTGAAGAAGGGAGAGAAA+TGG - chr2_2:60758097-60758116 Msa0262080:CDS 35.0%
TTTGAAGAAGGGAGAGAAAT+GGG - chr2_2:60758098-60758117 Msa0262080:CDS 35.0%
!! ATGGGTTTTGTGATGAGAAA+TGG - chr2_2:60758116-60758135 Msa0262080:CDS 35.0%
!! TGGGTTTTGTGATGAGAAAT+GGG - chr2_2:60758117-60758136 Msa0262080:CDS 35.0%
! GGGAATGTGTTTTATGTGAA+TGG - chr2_2:60758158-60758177 Msa0262080:CDS 35.0%
! ATGTGTTTTATGTGAATGGG+TGG - chr2_2:60758162-60758181 Msa0262080:CDS 35.0%
TGAATGGGTGGAATTCTTAT+TGG - chr2_2:60758174-60758193 Msa0262080:CDS 35.0%
! GTGGAATTCTTATTGGTTGA+TGG - chr2_2:60758181-60758200 Msa0262080:CDS 35.0%
TTCGTCAAATGCTGAAAACT+GGG - chr2_2:60758237-60758256 Msa0262080:CDS 35.0%
ACTCACTGTTTGTAGAACTT+GGG - chr2_2:60758271-60758290 Msa0262080:CDS 35.0%
AATGCTCTTCAAATTTCACC+TGG - chr2_2:60758314-60758333 Msa0262080:intron 35.0%
! GTTTGTAGCTCTTGATTTTC+TGG - chr2_2:60758379-60758398 Msa0262080:intron 35.0%
! GTGCACTCTTTTCCTAAAAT+TGG - chr2_2:60758573-60758592 Msa0262080:intron 35.0%
CTATGAGACATAATCACACT+CGG + chr2_2:60758605-60758624 None:intergenic 35.0%
AGGGACCAAACTAATAAACT+AGG - chr2_2:60758702-60758721 Msa0262080:CDS 35.0%
!! TGTTCCTTTAGGGTTGAAAA+TGG - chr2_2:60758792-60758811 Msa0262080:CDS 35.0%
GGTAGAATACAGAGAAAAAG+TGG - chr2_2:60759001-60759020 Msa0262080:intron 35.0%
! TTTTGTCCATCATGAAACCT+GGG - chr2_2:60759162-60759181 Msa0262080:intron 35.0%
TGGGAAATTGACCCAAAAAA+CGG - chr2_2:60759181-60759200 Msa0262080:CDS 35.0%
TTTCTGTTATACCCGATTGA+AGG - chr2_2:60759429-60759448 Msa0262080:intron 35.0%
AAGCAAGGCAAAATGGAATA+AGG - chr2_2:60759597-60759616 Msa0262080:intron 35.0%
! AATAACTTGCAACCATATGG+TGG - chr2_2:60759638-60759657 Msa0262080:intron 35.0%
! ATAACTTGCAACCATATGGT+GGG - chr2_2:60759639-60759658 Msa0262080:intron 35.0%
GAAGAGTCAGTATGTCAAAT+GGG - chr2_2:60759661-60759680 Msa0262080:intron 35.0%
ATAGAAGAACGAATCATTGG+AGG + chr2_2:60759714-60759733 None:intergenic 35.0%
ACACAAGCCATAGAAAACAT+AGG + chr2_2:60760014-60760033 None:intergenic 35.0%
CTATGTCAGATAAAATGGTC+TGG + chr2_2:60760089-60760108 None:intergenic 35.0%
! CAGACCATTTTATCTGACAT+AGG - chr2_2:60760087-60760106 Msa0262080:intron 35.0%
!!! TGGTACCTTTTTTACCGTTT+AGG - chr2_2:60760192-60760211 Msa0262080:intron 35.0%
CCTATGTTCTATGACCTAAA+CGG + chr2_2:60760209-60760228 None:intergenic 35.0%
TAGTCAGAGTCTAACGTTAT+CGG + chr2_2:60760235-60760254 None:intergenic 35.0%
! ACTAATATCCGAGTGTTGTT+GGG - chr2_2:60760251-60760270 Msa0262080:intron 35.0%
TAGATGGGAAAAATAGCATC+GGG + chr2_2:60760306-60760325 None:intergenic 35.0%
GTAGATGGGAAAAATAGCAT+CGG + chr2_2:60760307-60760326 None:intergenic 35.0%
! ATTTTTCCCATCTACAAGAC+TGG - chr2_2:60760312-60760331 Msa0262080:intron 35.0%
CAATAAAGGAGTAGTGAGAA+AGG - chr2_2:60760434-60760453 Msa0262080:CDS 35.0%
CTGTGAAGCAAAGAATTAGA+CGG - chr2_2:60760488-60760507 Msa0262080:CDS 35.0%
AAGGTTAAGAATTTGCGTGT+GGG + chr2_2:60760538-60760557 None:intergenic 35.0%
TAAGGTTAAGAATTTGCGTG+TGG + chr2_2:60760539-60760558 None:intergenic 35.0%
! ACCTGTTTCCTTTAACGTTT+TGG - chr2_2:60760589-60760608 Msa0262080:intron 35.0%
ACCAAAACGTTAAAGGAAAC+AGG + chr2_2:60760593-60760612 None:intergenic 35.0%
TGGTGAAACCAAAACGTTAA+AGG + chr2_2:60760600-60760619 None:intergenic 35.0%
CCAAAGATACAAGCTTCATA+TGG + chr2_2:60760700-60760719 None:intergenic 35.0%
CCATATGAAGCTTGTATCTT+TGG - chr2_2:60760697-60760716 Msa0262080:intron 35.0%
!!! CTTGTATCTTTGGTTTTCCT+AGG - chr2_2:60760707-60760726 Msa0262080:intron 35.0%
!!! AGGATGCTATTAGTTTTCGA+AGG + chr2_2:60760829-60760848 None:intergenic 35.0%
AATCAATTCCCAGCCAAAAA+TGG + chr2_2:60760922-60760941 None:intergenic 35.0%
!! ATTATATGTTGACTCCCATG+AGG - chr2_2:60761070-60761089 Msa0262080:intron 35.0%
GATCTCTAATGAACTTGTCA+TGG - chr2_2:60761131-60761150 Msa0262080:intron 35.0%
TTTCTCTCCACAACTGAATA+TGG - chr2_2:60761158-60761177 Msa0262080:intron 35.0%
AGAATCCTTCGTATTGAACT+TGG + chr2_2:60761204-60761223 None:intergenic 35.0%
AATGTTGAAATCTTTCCTGC+AGG - chr2_2:60761310-60761329 Msa0262080:intron 35.0%
!!! TATCAGAGATTTTGGAGTTC+CGG + chr2_2:60761487-60761506 None:intergenic 35.0%
!! CTCATAGTGGAAATTTTGGT+CGG + chr2_2:60761620-60761639 None:intergenic 35.0%
!! CCTACTCATAGTGGAAATTT+TGG + chr2_2:60761624-60761643 None:intergenic 35.0%
CCAAAATTTCCACTATGAGT+AGG - chr2_2:60761621-60761640 Msa0262080:intron 35.0%
! TACTTTTACCCTACTCATAG+TGG + chr2_2:60761633-60761652 None:intergenic 35.0%
! TAACCTTTTCTTACTTCTGC+AGG + chr2_2:60761706-60761725 None:intergenic 35.0%
! TTCATACATCTTTTCTCGGT+CGG + chr2_2:60762008-60762027 None:intergenic 35.0%
AGTTTGGCAATTCTTAGTTG+GGG - chr2_2:60762087-60762106 Msa0262080:CDS 35.0%
! GATTAGTTGAGTGTATAGTG+TGG - chr2_2:60762374-60762393 Msa0262080:five_prime_UTR 35.0%
TTGTAATTACCAACACAGCT+CGG + chr2_2:60762582-60762601 None:intergenic 35.0%
! GTACAAATTTTCCACACCGT+CGG - chr2_2:60757496-60757515 Msa0262080:three_prime_UTR 40.0%
TGAGTTAGAAGTGAAACCGA+CGG + chr2_2:60757515-60757534 None:intergenic 40.0%
! ACTAGTTTAGTGACCCTTTG+AGG - chr2_2:60757929-60757948 Msa0262080:CDS 40.0%
!! ACATGTCTTTTGGAGGGTTA+AGG - chr2_2:60758069-60758088 Msa0262080:CDS 40.0%
AAATGGGACACAGTTTGTGT+TGG - chr2_2:60758133-60758152 Msa0262080:CDS 40.0%
! CGATTTTTCGTCGCGATATA+AGG - chr2_2:60758214-60758233 Msa0262080:CDS 40.0%
GTTCGTCAAATGCTGAAAAC+TGG - chr2_2:60758236-60758255 Msa0262080:CDS 40.0%
TCGTCAAATGCTGAAAACTG+GGG - chr2_2:60758238-60758257 Msa0262080:CDS 40.0%
CTGAAAACTGGGGCTAATAT+GGG - chr2_2:60758248-60758267 Msa0262080:CDS 40.0%
GACTCACTGTTTGTAGAACT+TGG - chr2_2:60758270-60758289 Msa0262080:CDS 40.0%
AGAACTTGGGCTTTCAATGA+TGG - chr2_2:60758284-60758303 Msa0262080:CDS 40.0%
ACTTGTTCATCAAAGTGACC+AGG + chr2_2:60758335-60758354 None:intergenic 40.0%
! AAGAGTGCACAAACTGAGTA+GGG + chr2_2:60758563-60758582 None:intergenic 40.0%
! AAAGAGTGCACAAACTGAGT+AGG + chr2_2:60758564-60758583 None:intergenic 40.0%
CGAGTGTGATTATGTCTCAT+AGG - chr2_2:60758603-60758622 Msa0262080:intron 40.0%
CTCATAGGTCTTTGCAAAAG+TGG - chr2_2:60758618-60758637 Msa0262080:CDS 40.0%
ATAATGGTATCTTGCTGGGA+AGG - chr2_2:60758678-60758697 Msa0262080:CDS 40.0%
AGCATTTGCCAAAATCACAG+TGG + chr2_2:60758866-60758885 None:intergenic 40.0%
CTGTGAGTTTGGCAAATTCA+TGG + chr2_2:60758923-60758942 None:intergenic 40.0%
GTCTGAATTGACTGTGAGTT+TGG + chr2_2:60758934-60758953 None:intergenic 40.0%
ACTGAGTTACCATCGTTTCT+GGG - chr2_2:60758974-60758993 Msa0262080:intron 40.0%
!! CAGGTTTCATGATGGACAAA+AGG + chr2_2:60759163-60759182 None:intergenic 40.0%
! CTTTTGTCCATCATGAAACC+TGG - chr2_2:60759161-60759180 Msa0262080:intron 40.0%
CAATTTCCCAGGTTTCATGA+TGG + chr2_2:60759171-60759190 None:intergenic 40.0%
!!! GTTTTTTGGGTCAATTTCCC+AGG + chr2_2:60759182-60759201 None:intergenic 40.0%
ATTGACCCAAAAAACGGTGT+CGG - chr2_2:60759187-60759206 Msa0262080:CDS 40.0%
!!! AAACACCGACACCGTTTTTT+GGG + chr2_2:60759195-60759214 None:intergenic 40.0%
TAACATGTCCTTTATGACCG+AGG - chr2_2:60759312-60759331 Msa0262080:intron 40.0%
!! TGGAAGTGTTGTGAACTTCA+GGG - chr2_2:60759364-60759383 Msa0262080:intron 40.0%
! ACTAAGGATTGGTATGTGAC+AGG - chr2_2:60759553-60759572 Msa0262080:intron 40.0%
ATTACGTCATAGCAGAAGCA+AGG - chr2_2:60759582-60759601 Msa0262080:intron 40.0%
ATAGCAGAAGCAAGGCAAAA+TGG - chr2_2:60759590-60759609 Msa0262080:intron 40.0%
GGAAGAGTCAGTATGTCAAA+TGG - chr2_2:60759660-60759679 Msa0262080:intron 40.0%
! CAGTAGGCCTATGTTTTCTA+TGG - chr2_2:60760004-60760023 Msa0262080:intron 40.0%
!! GGTAAAAAAGGTACCATCAC+TGG + chr2_2:60760188-60760207 None:intergenic 40.0%
CCGTTTAGGTCATAGAACAT+AGG - chr2_2:60760206-60760225 Msa0262080:intron 40.0%
! GACTAATATCCGAGTGTTGT+TGG - chr2_2:60760250-60760269 Msa0262080:intron 40.0%
! CAAGTTCCAGTCTTGTAGAT+GGG + chr2_2:60760321-60760340 None:intergenic 40.0%
! TCAAGTTCCAGTCTTGTAGA+TGG + chr2_2:60760322-60760341 None:intergenic 40.0%
GGAACTTGAGACCTTACTTA+AGG - chr2_2:60760333-60760352 Msa0262080:intron 40.0%
!!! GAAACAAGTTTTGGTGTCAC+TGG - chr2_2:60760355-60760374 Msa0262080:intron 40.0%
! GAAGGAAGAAAGGTATGCAT+TGG + chr2_2:60760514-60760533 None:intergenic 40.0%
CAAGCTTCATATGGAAGTCA+TGG + chr2_2:60760691-60760710 None:intergenic 40.0%
! TTTTCGAAGGATAGCCTCAA+GGG + chr2_2:60760816-60760835 None:intergenic 40.0%
ACAGTCTGCAGAAAACTCAA+AGG + chr2_2:60760849-60760868 None:intergenic 40.0%
! AGAAATGACCCCACCATTTT+TGG - chr2_2:60760906-60760925 Msa0262080:intron 40.0%
AATTCCCAGCCAAAAATGGT+GGG + chr2_2:60760918-60760937 None:intergenic 40.0%
TGTCACCAAGTTCAATACGA+AGG - chr2_2:60761196-60761215 Msa0262080:intron 40.0%
ATAAAAGCCTTCATTCCCCA+CGG + chr2_2:60761393-60761412 None:intergenic 40.0%
TTATGGTCCTAATGACCCAA+AGG - chr2_2:60761409-60761428 Msa0262080:intron 40.0%
GTCAAATCCTTTGGGTCATT+AGG + chr2_2:60761419-60761438 None:intergenic 40.0%
GATATAATCAGACCCAAGTC+TGG + chr2_2:60761465-60761484 None:intergenic 40.0%
GACTTGGGTCTGATTATATC+CGG - chr2_2:60761465-60761484 Msa0262080:intron 40.0%
TTCATATCTACCCGGATCAA+TGG - chr2_2:60761522-60761541 Msa0262080:intron 40.0%
AGCAATGCTTACCATTGATC+CGG + chr2_2:60761536-60761555 None:intergenic 40.0%
GTTGTGTTACAGTTTCAGAG+TGG + chr2_2:60761684-60761703 None:intergenic 40.0%
CAACCTGCAGAAGTAAGAAA+AGG - chr2_2:60761700-60761719 Msa0262080:intron 40.0%
CGCCGAAGACAAATCTAAAA+GGG + chr2_2:60761798-60761817 None:intergenic 40.0%
ACGCCGAAGACAAATCTAAA+AGG + chr2_2:60761799-60761818 None:intergenic 40.0%
! CTTTTTGCATAGGTTTCACG+AGG - chr2_2:60761841-60761860 Msa0262080:CDS 40.0%
ATGCTTTCCCACATTGAAGA+TGG - chr2_2:60761908-60761927 Msa0262080:CDS 40.0%
TTCATCGCCATCTTCAATGT+GGG + chr2_2:60761918-60761937 None:intergenic 40.0%
ATAATCCGTATTCGGAGAAC+AGG + chr2_2:60761958-60761977 None:intergenic 40.0%
TCTGCTAAGAGAAACAAGTC+TGG - chr2_2:60762052-60762071 Msa0262080:CDS 40.0%
GTTTGGCAATTCTTAGTTGG+GGG - chr2_2:60762088-60762107 Msa0262080:CDS 40.0%
! CATCTGGTTTCAATTCAGTC+AGG - chr2_2:60762631-60762650 Msa0262080:five_prime_UTR 40.0%
GGACACAGTTTGTGTTGGAT+GGG - chr2_2:60758138-60758157 Msa0262080:CDS 45.0%
GCTGAAAACTGGGGCTAATA+TGG - chr2_2:60758247-60758266 Msa0262080:CDS 45.0%
! ACTCGGTCATGCCCAATTTT+AGG + chr2_2:60758588-60758607 None:intergenic 45.0%
GACTGAGTTACCATCGTTTC+TGG - chr2_2:60758973-60758992 Msa0262080:intron 45.0%
! TTACCATCGTTTCTGGGAAG+TGG - chr2_2:60758980-60758999 Msa0262080:intron 45.0%
!!! GAAACACCGACACCGTTTTT+TGG + chr2_2:60759196-60759215 None:intergenic 45.0%
!! GTGGAAGTGTTGTGAACTTC+AGG - chr2_2:60759363-60759382 Msa0262080:intron 45.0%
!! GGAAGTGTTGTGAACTTCAG+GGG - chr2_2:60759365-60759384 Msa0262080:intron 45.0%
GATTGGTATGTGACAGGCTT+TGG - chr2_2:60759559-60759578 Msa0262080:intron 45.0%
!! TACTGACTCTTCCCACCATA+TGG + chr2_2:60759653-60759672 None:intergenic 45.0%
GTCAGTATGTCAAATGGGCA+TGG - chr2_2:60759666-60759685 Msa0262080:intron 45.0%
TCAAATGGGCATGGCAAGAA+GGG - chr2_2:60759675-60759694 Msa0262080:intron 45.0%
GGGGAAAGGAGAAAGAGAAA+AGG + chr2_2:60759806-60759825 None:intergenic 45.0%
AAGAATGCCACTCCAACCAT+TGG + chr2_2:60759852-60759871 None:intergenic 45.0%
TTGGAAGTTGAGACCAGTGA+TGG - chr2_2:60760172-60760191 Msa0262080:intron 45.0%
AGAGCTTACCCTCCTTTATG+GGG + chr2_2:60760283-60760302 None:intergenic 45.0%
GAGAGCTTACCCTCCTTTAT+GGG + chr2_2:60760284-60760303 None:intergenic 45.0%
AAGAATTTGCGTGTGGGAGA+AGG + chr2_2:60760532-60760551 None:intergenic 45.0%
! GTTTTCGAAGGATAGCCTCA+AGG + chr2_2:60760817-60760836 None:intergenic 45.0%
TTCTGCAGACTGTCTTGACA+AGG - chr2_2:60760856-60760875 Msa0262080:intron 45.0%
ATTCCCAGCCAAAAATGGTG+GGG + chr2_2:60760917-60760936 None:intergenic 45.0%
CAATTCCCAGCCAAAAATGG+TGG + chr2_2:60760919-60760938 None:intergenic 45.0%
TGAAATCTTTCCTGCAGGAG+TGG - chr2_2:60761315-60761334 Msa0262080:intron 45.0%
GGAGTGGATAGAGGAAATGT+CGG - chr2_2:60761331-60761350 Msa0262080:intron 45.0%
AAGAACCATATGCTGACCGT+GGG - chr2_2:60761374-60761393 Msa0262080:intron 45.0%
! GTGGGGAATGAAGGCTTTTA+TGG - chr2_2:60761392-60761411 Msa0262080:intron 45.0%
GGTTGACGGTCAAATCCTTT+GGG + chr2_2:60761427-60761446 None:intergenic 45.0%
CACCTCAGTTCATATCTACC+CGG - chr2_2:60761514-60761533 Msa0262080:intron 45.0%
ATCCGGGTAGATATGAACTG+AGG + chr2_2:60761519-60761538 None:intergenic 45.0%
GCAATGCTTACCATTGATCC+GGG + chr2_2:60761535-60761554 None:intergenic 45.0%
CTTCATCGCCATCTTCAATG+TGG + chr2_2:60761919-60761938 None:intergenic 45.0%
!! CGATGAAGTACTGAAGAAGC+CGG - chr2_2:60761931-60761950 Msa0262080:CDS 45.0%
! AAGAGAAACAAGTCTGGAGC+AGG - chr2_2:60762058-60762077 Msa0262080:CDS 45.0%
GCAATTCTTAGTTGGGGGAA+TGG - chr2_2:60762093-60762112 Msa0262080:CDS 45.0%
ATTCTTAGTTGGGGGAATGG+AGG - chr2_2:60762096-60762115 Msa0262080:CDS 45.0%
TGATTATGGAATCGTCCCAG+CGG - chr2_2:60762129-60762148 Msa0262080:CDS 45.0%
!!! GTAAAAATTATATATTTTTT+TGG - chr2_2:60762675-60762694 Msa0262080:five_prime_UTR 5.0%
TAGAAGTGAAACCGACGGTG+TGG + chr2_2:60757510-60757529 None:intergenic 50.0%
GGGACACAGTTTGTGTTGGA+TGG - chr2_2:60758137-60758156 Msa0262080:CDS 50.0%
!! ACAGCGTGCCACTGTGATTT+TGG - chr2_2:60758855-60758874 Msa0262080:intron 50.0%
CTACCACTTCCCAGAAACGA+TGG + chr2_2:60758986-60759005 None:intergenic 50.0%
TGGCAAGCGATCTCTCTCTA+TGG - chr2_2:60759021-60759040 Msa0262080:intron 50.0%
!! GGGGTACCGATTTCAATTCC+TGG - chr2_2:60759384-60759403 Msa0262080:intron 50.0%
GTCAAATGGGCATGGCAAGA+AGG - chr2_2:60759674-60759693 Msa0262080:intron 50.0%
CAAATGGGCATGGCAAGAAG+GGG - chr2_2:60759676-60759695 Msa0262080:intron 50.0%
GGTAAAGAGAAAGGGGGGAA+AGG + chr2_2:60759820-60759839 None:intergenic 50.0%
ATGCCACTCCAACCATTGGA+GGG + chr2_2:60759848-60759867 None:intergenic 50.0%
AATGCCACTCCAACCATTGG+AGG + chr2_2:60759849-60759868 None:intergenic 50.0%
! ATCCGAGTGTTGTTGGGAAG+AGG - chr2_2:60760257-60760276 Msa0262080:intron 50.0%
GGAGAGCTTACCCTCCTTTA+TGG + chr2_2:60760285-60760304 None:intergenic 50.0%
CTCTATGTTTGCAGCCCTTG+AGG - chr2_2:60760799-60760818 Msa0262080:intron 50.0%
!!! ATGACCCCACCATTTTTGGC+TGG - chr2_2:60760910-60760929 Msa0262080:intron 50.0%
!!! TGACCCCACCATTTTTGGCT+GGG - chr2_2:60760911-60760930 Msa0262080:intron 50.0%
GAACGATCAGTCATGCAACG+AGG + chr2_2:60760951-60760970 None:intergenic 50.0%
CGTTGCATGACTGATCGTTC+CGG - chr2_2:60760951-60760970 Msa0262080:intron 50.0%
!! ACTTACTTGGAGAGTGTCGC+CGG + chr2_2:60760973-60760992 None:intergenic 50.0%
TCGCAGGTGAAGGACTTACT+TGG + chr2_2:60760986-60761005 None:intergenic 50.0%
ACATTTGAAGGGTGGATCGC+AGG + chr2_2:60761002-60761021 None:intergenic 50.0%
TTTCCTGCAGGAGTGGATAG+AGG - chr2_2:60761322-60761341 Msa0262080:intron 50.0%
TTTCCTCTATCCACTCCTGC+AGG + chr2_2:60761328-60761347 None:intergenic 50.0%
CAAGAACCATATGCTGACCG+TGG - chr2_2:60761373-60761392 Msa0262080:intron 50.0%
AGAACCATATGCTGACCGTG+GGG - chr2_2:60761375-60761394 Msa0262080:intron 50.0%
GGGTTGACGGTCAAATCCTT+TGG + chr2_2:60761428-60761447 None:intergenic 50.0%
GGTCGGATACAGTGAAGTTC+TGG + chr2_2:60761991-60762010 None:intergenic 50.0%
! GTGTTGATCGACTTTCCGCT+GGG + chr2_2:60762147-60762166 None:intergenic 50.0%
! TGTGTTGATCGACTTTCCGC+TGG + chr2_2:60762148-60762167 None:intergenic 50.0%
ATGCAGATTGGGCAAAGCGA+AGG - chr2_2:60762189-60762208 Msa0262080:five_prime_UTR 50.0%
TGCAGATTGGGCAAAGCGAA+GGG - chr2_2:60762190-60762209 Msa0262080:five_prime_UTR 50.0%
! ACACAGCTCGGTGAGATGAT+AGG + chr2_2:60762570-60762589 None:intergenic 50.0%
ATCATCTCACCGAGCTGTGT+TGG - chr2_2:60762570-60762589 Msa0262080:five_prime_UTR 50.0%
TGGTATCTTGCTGGGAAGGC+AGG - chr2_2:60758682-60758701 Msa0262080:CDS 55.0%
GGTATCTTGCTGGGAAGGCA+GGG - chr2_2:60758683-60758702 Msa0262080:CDS 55.0%
GCGCTAGACCTCGGTCATAA+AGG + chr2_2:60759323-60759342 None:intergenic 55.0%
CAACCACTTGCGCTAGACCT+CGG + chr2_2:60759332-60759351 None:intergenic 55.0%
CGTGGGGTAAAGAGAAAGGG+GGG + chr2_2:60759825-60759844 None:intergenic 55.0%
GCGTGGGGTAAAGAGAAAGG+GGG + chr2_2:60759826-60759845 None:intergenic 55.0%
GGCGTGGGGTAAAGAGAAAG+GGG + chr2_2:60759827-60759846 None:intergenic 55.0%
GGGCGTGGGGTAAAGAGAAA+GGG + chr2_2:60759828-60759847 None:intergenic 55.0%
AGGGCGTGGGGTAAAGAGAA+AGG + chr2_2:60759829-60759848 None:intergenic 55.0%
GGCCTCTTCCCAACAACACT+CGG + chr2_2:60760262-60760281 None:intergenic 55.0%
GTTGGGAAGAGGCCCCATAA+AGG - chr2_2:60760268-60760287 Msa0262080:intron 55.0%
GGAAGAGGCCCCATAAAGGA+GGG - chr2_2:60760272-60760291 Msa0262080:intron 55.0%
ACAGCAAGATTGCACCGCTG+CGG + chr2_2:60760472-60760491 None:intergenic 55.0%
GCGTGTGGGAGAAGGAAGAA+AGG + chr2_2:60760524-60760543 None:intergenic 55.0%
CATTCCCCACGGTCAGCATA+TGG + chr2_2:60761382-60761401 None:intergenic 55.0%
ATGCTGACCGTGGGGAATGA+AGG - chr2_2:60761383-60761402 Msa0262080:intron 55.0%
TGTGTTATGGGTATGGGCGC+AGG - chr2_2:60761653-60761672 Msa0262080:intron 55.0%
CCGTATTCGGAGAACAGGAC+CGG + chr2_2:60761953-60761972 None:intergenic 55.0%
CCGGTCCTGTTCTCCGAATA+CGG - chr2_2:60761950-60761969 Msa0262080:CDS 55.0%
CTGGAGCAGGCGCTTTAGTT+TGG - chr2_2:60762071-60762090 Msa0262080:CDS 55.0%
GATTGGGCAAAGCGAAGGGA+TGG - chr2_2:60762194-60762213 Msa0262080:five_prime_UTR 55.0%
TGACCGAGGTCTAGCGCAAG+TGG - chr2_2:60759326-60759345 Msa0262080:intron 60.0%
CGAGGTCTAGCGCAAGTGGT+TGG - chr2_2:60759330-60759349 Msa0262080:intron 60.0%
! AGTGGTTGGTGCGCAGTGTG+TGG - chr2_2:60759344-60759363 Msa0262080:intron 60.0%
TGGGCATGGCAAGAAGGGGT+AGG - chr2_2:60759680-60759699 Msa0262080:intron 60.0%
CTTTACCCCACGCCCTCCAA+TGG - chr2_2:60759833-60759852 Msa0262080:intron 60.0%
! TCCAACCATTGGAGGGCGTG+GGG + chr2_2:60759841-60759860 None:intergenic 60.0%
! CTCCAACCATTGGAGGGCGT+GGG + chr2_2:60759842-60759861 None:intergenic 60.0%
ACTCCAACCATTGGAGGGCG+TGG + chr2_2:60759843-60759862 None:intergenic 60.0%
ACGCCCTCCAATGGTTGGAG+TGG - chr2_2:60759842-60759861 Msa0262080:intron 60.0%
GGGAAGAGGCCCCATAAAGG+AGG - chr2_2:60760271-60760290 Msa0262080:intron 60.0%
GGGCTGAATCATCACCGCAG+CGG - chr2_2:60760455-60760474 Msa0262080:CDS 60.0%
GAAGGGTGGATCGCAGGTGA+AGG + chr2_2:60760996-60761015 None:intergenic 60.0%
ACCCCACGCCCTCCAATGGT+TGG - chr2_2:60759837-60759856 Msa0262080:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 60757456 60762704 60757456 ID=Msa0262080;Name=Msa0262080
chr2_2 mRNA 60757456 60762704 60757456 ID=Msa0262080-mRNA-1;Parent=Msa0262080;Name=Msa0262080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=549|1|1|1|0.8|0.66|6|416|430
chr2_2 exon 60757456 60757661 60757456 ID=Msa0262080-mRNA-1:exon:18714;Parent=Msa0262080-mRNA-1
chr2_2 exon 60757695 60758307 60757695 ID=Msa0262080-mRNA-1:exon:18713;Parent=Msa0262080-mRNA-1
chr2_2 exon 60758617 60758828 60758617 ID=Msa0262080-mRNA-1:exon:18712;Parent=Msa0262080-mRNA-1
chr2_2 exon 60759174 60759296 60759174 ID=Msa0262080-mRNA-1:exon:18711;Parent=Msa0262080-mRNA-1
chr2_2 exon 60760388 60760585 60760388 ID=Msa0262080-mRNA-1:exon:18710;Parent=Msa0262080-mRNA-1
chr2_2 exon 60761799 60762704 60761799 ID=Msa0262080-mRNA-1:exon:18709;Parent=Msa0262080-mRNA-1
chr2_2 five_prime_UTR 60762156 60762704 60762156 ID=Msa0262080-mRNA-1:five_prime_utr;Parent=Msa0262080-mRNA-1
chr2_2 CDS 60761799 60762155 60761799 ID=Msa0262080-mRNA-1:cds;Parent=Msa0262080-mRNA-1
chr2_2 CDS 60760388 60760585 60760388 ID=Msa0262080-mRNA-1:cds;Parent=Msa0262080-mRNA-1
chr2_2 CDS 60759174 60759296 60759174 ID=Msa0262080-mRNA-1:cds;Parent=Msa0262080-mRNA-1
chr2_2 CDS 60758617 60758828 60758617 ID=Msa0262080-mRNA-1:cds;Parent=Msa0262080-mRNA-1
chr2_2 CDS 60757905 60758307 60757905 ID=Msa0262080-mRNA-1:cds;Parent=Msa0262080-mRNA-1
chr2_2 three_prime_UTR 60757695 60757904 60757695 ID=Msa0262080-mRNA-1:three_prime_utr;Parent=Msa0262080-mRNA-1
chr2_2 three_prime_UTR 60757456 60757661 60757456 ID=Msa0262080-mRNA-1:three_prime_utr;Parent=Msa0262080-mRNA-1
Gene Sequence

>Msa0262080

ATGTTTGCAGGAAATGGATTGTTTTATCCCATTTTGGGTTTTGCTTCTTTTGTGGTTTTTATTTACATGTCTTTTGGAGGGTTAAGGTTTAGTTTTGAAGAAGGGAGAGAAATGGGTTTTGTGATGAGAAATGGGACACAGTTTGTGTTGGATGGGAATGTGTTTTATGTGAATGGGTGGAATTCTTATTGGTTGATGGATCATTCTGTCGATTTTTCGTCGCGATATAAGGTTCGTCAAATGCTGAAAACTGGGGCTAATATGGGACTCACTGTTTGTAGAACTTGGGCTTTCAATGATGGTCATTATAATGCTCTTCAAATTTCACCTGGTCACTTTGATGAACAAGTTTTTCAGGCTTTGGATTACGTCATAGCAGAAGCAAGGCAAAATGGAATAAGGCTGCTCCTTTGCTTAGTAAATAACTTGCAACCATATGGTGGGAAGAGTCAGTATGTCAAATGGGCATGGCAAGAAGGGGTAGGATTAAGCGCCTCCAATGATTCGTTCTTCTATGATCCATCAATCCGTAGTTATTTCAAGAATTACATCAAGACTGTCTTGACAAGGAAAAATTCTTTCACCGGAATTGAATATAGAAATGACCCCACCATTTTTGGCTGGGAATTGATTAATGAGCCTCGTTGCATGACTGATCGTTCCGGCGACACTCTCCAAGAGTGGATAGAGGAAATGTCGGCTTTTGTGAAATTGATTGACAAGAACCATATGCTGACCGTGGGGAATGAAGGCTTTTATGGTCCTAATGACCCAAAGGATTTGACCGTCAACCCCAATTATTGGGCATCCAGACTTGGGTCTGATTATATCCGGAACTCCAAAATCTCTGATATTGATTTCACCTCAGTTCATATCTACCCGGATCAATGGTTTCACGAGGATGAGAAAGCAATTGAAACTCAACTGAAATTTGTCAACAAGTGGATGCTTTCCCACATTGAAGATGGCGATGAAGTACTGAAGAAGCCGGTCCTGTTCTCCGAATACGGATTATCAAAAAAGAACCAGAACTTCACTGTATCCGACCGAGAAAAGATGTATGAAACAATTTTAAACATCGTTTACAAATCTGCTAAGAGAAACAAGTCTGGAGCAGGCGCTTTAGTTTGGCAATTCTTAGTTGGGGGAATGGAGGAATATTCTGATGATTATGGAATCGTCCCAGCGGAAAGTCGATCAACACAATCGCTATTTATAAAACAGTCATGCAGATTGGGCAAAGCGAAGGGATGGATTAATCAACAAGATGTAAATTTCAAAGCACTTTGTTAG
Protein sequence

>Msa0262080

MFAGNGLFYPILGFASFVVFIYMSFGGLRFSFEEGREMGFVMRNGTQFVLDGNVFYVNGWNSYWLMDHSVDFSSRYKVRQMLKTGANMGLTVCRTWAFNDGHYNALQISPGHFDEQVFQALDYVIAEARQNGIRLLLCLVNNLQPYGGKSQYVKWAWQEGVGLSASNDSFFYDPSIRSYFKNYIKTVLTRKNSFTGIEYRNDPTIFGWELINEPRCMTDRSGDTLQEWIEEMSAFVKLIDKNHMLTVGNEGFYGPNDPKDLTVNPNYWASRLGSDYIRNSKISDIDFTSVHIYPDQWFHEDEKAIETQLKFVNKWMLSHIEDGDEVLKKPVLFSEYGLSKKNQNFTVSDREKMYETILNIVYKSAKRNKSGAGALVWQFLVGGMEEYSDDYGIVPAESRSTQSLFIKQSCRLGKAKGWINQQDVNFKALC*