AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0337330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337330 MtrunA17_Chr2g0324441 98.605 430 6 0 1 430 1 430 0.0 888
Msa0337330 MtrunA17_Chr4g0040121 70.766 431 122 3 1 430 1 428 0.0 633
Msa0337330 MtrunA17_Chr8g0334501 46.565 393 207 2 21 413 43 432 1.20e-132 389
Msa0337330 MtrunA17_Chr7g0245051 47.632 380 196 2 34 413 53 429 1.43e-131 387
Msa0337330 MtrunA17_Chr7g0245101 47.105 380 198 2 34 413 54 430 3.34e-130 383
Msa0337330 MtrunA17_Chr5g0404601 47.594 374 192 2 39 412 30 399 3.39e-129 380
Msa0337330 MtrunA17_Chr4g0020521 43.687 396 213 4 21 412 11 400 2.86e-125 369
Msa0337330 MtrunA17_Chr7g0271511 45.789 380 197 4 37 416 59 429 1.29e-123 365
Msa0337330 MtrunA17_Chr1g0193611 44.591 379 203 4 39 416 31 403 1.68e-121 359
Msa0337330 MtrunA17_Chr1g0193531 44.737 380 204 4 37 416 26 399 4.19e-121 358
Msa0337330 MtrunA17_Chr1g0193601 44.180 378 206 3 39 416 31 403 1.59e-119 354
Msa0337330 MtrunA17_Chr3g0141751 43.799 379 202 5 40 416 26 395 2.41e-119 353
Msa0337330 MtrunA17_Chr1g0193551 41.019 412 228 6 12 416 1 404 9.33e-116 344
Msa0337330 MtrunA17_Chr1g0193541 38.845 381 191 5 38 416 29 369 3.81e-91 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337330 AT2G20680.1 68.193 415 130 1 3 417 5 417 0.0 603
Msa0337330 AT4G28320.1 66.667 420 136 2 11 430 12 427 0.0 583
Msa0337330 AT5G01930.1 46.719 381 198 3 33 413 42 417 5.15e-128 377
Msa0337330 AT3G10900.1 42.356 399 224 5 17 413 6 400 1.33e-122 362
Msa0337330 AT5G66460.1 45.722 374 197 3 39 412 30 397 3.10e-122 362
Msa0337330 AT3G10890.1 42.520 381 212 5 39 417 30 405 5.11e-117 348
Msa0337330 AT1G02310.1 42.338 385 208 6 37 416 26 401 1.16e-110 332
Msa0337330 AT1G02310.2 42.338 385 208 6 37 416 46 421 1.75e-110 332
Msa0337330 AT3G30540.1 36.842 361 186 5 17 376 6 325 5.58e-85 263

Find 125 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAAAACTGGGGCTAATA+TGG 0.184464 2_4:-57289094 Msa0337330:CDS
GAAATCAATATCAGAGATTT+TGG 0.195187 2_4:+57285840 None:intergenic
AATCATTCCAAATTGAAATT+AGG 0.219616 2_4:+57284974 None:intergenic
GCAATATCCTAATTTCAATT+TGG 0.221596 2_4:-57284981 Msa0337330:three_prime_UTR
TGACCGTCAACCCCAATTAT+TGG 0.222691 2_4:-57285897 Msa0337330:CDS
AAGTCTGGATGCCCAATAAT+TGG 0.233607 2_4:+57285885 None:intergenic
AGGAAAGTTGAATTATTTAT+AGG 0.245976 2_4:+57289690 None:intergenic
AAAAGAAGCAAAACCCAAAA+TGG 0.248452 2_4:+57289308 None:intergenic
GAGGAATATTCTGATGATTA+TGG 0.283488 2_4:-57285216 Msa0337330:CDS
TGAATGGGTGGAATTCTTAT+TGG 0.297092 2_4:-57289167 Msa0337330:CDS
GTAGTAATGAGAAAATAATT+AGG 0.307860 2_4:+57289670 None:intergenic
TCATTAAAGTTAGTGTCTTT+TGG 0.308669 2_4:-57289582 Msa0337330:five_prime_UTR
GACCGTCAACCCCAATTATT+GGG 0.317018 2_4:-57285896 Msa0337330:CDS
TAGTTTGGCAATTCTTAGTT+GGG 0.322364 2_4:-57285245 Msa0337330:CDS
GTCATTTCTATATTCAATTC+CGG 0.324364 2_4:+57286434 None:intergenic
GTTCGTCAAATGCTGAAAAC+TGG 0.331006 2_4:-57289105 Msa0337330:CDS
TTGAAATAACTACGGATTGA+TGG 0.340488 2_4:+57287589 None:intergenic
CTGGAGCAGGCGCTTTAGTT+TGG 0.343911 2_4:-57285260 Msa0337330:CDS
TTAGTTTGGCAATTCTTAGT+TGG 0.347632 2_4:-57285246 Msa0337330:CDS
GGGTTGACGGTCAAATCCTT+TGG 0.352850 2_4:+57285907 None:intergenic
GGTCGGATACAGTGAAATTC+TGG 0.353414 2_4:+57285343 None:intergenic
GTGGAATTCTTATTGGTTGA+TGG 0.368784 2_4:-57289160 Msa0337330:CDS
GTCAAATCCTTTGGGTCATT+AGG 0.369609 2_4:+57285916 None:intergenic
GATTTAAGTGACTACACATT+GGG 0.373083 2_4:-57285011 Msa0337330:three_prime_UTR
AGTCTGGATGCCCAATAATT+GGG 0.376159 2_4:+57285886 None:intergenic
TTTGAAGAAGGGAGAGAAAT+GGG 0.376956 2_4:-57289243 Msa0337330:CDS
AAGCAAGGCAAAATGGAATA+AGG 0.383619 2_4:-57287729 Msa0337330:CDS
ACTAATTTAGTGACCCTTTG+AGG 0.392458 2_4:-57289412 Msa0337330:five_prime_UTR
TATAAAACAATCATGCAGAT+TGG 0.397582 2_4:-57285154 Msa0337330:CDS
CAGTATGGAATAGAGATATC+TGG 0.399999 2_4:-57285044 Msa0337330:three_prime_UTR
CCGGTCCTGTTCTCCGAATA+CGG 0.405166 2_4:-57285381 Msa0337330:CDS
GGTTGACGGTCAAATCCTTT+GGG 0.409738 2_4:+57285908 None:intergenic
GACTCACTGTTTGTAGAACT+TGG 0.410613 2_4:-57289071 Msa0337330:CDS
GTAAATAACTTGCAACCATA+TGG 0.414901 2_4:-57287691 Msa0337330:CDS
AGCAATGCTTACCATTGATC+CGG 0.418166 2_4:+57285799 None:intergenic
ATAAAACAATCATGCAGATT+GGG 0.418742 2_4:-57285153 Msa0337330:CDS
CATTCCCCACGGTCAGCATA+TGG 0.420083 2_4:+57285953 None:intergenic
ATAGCAGAAGCAAGGCAAAA+TGG 0.422959 2_4:-57287736 Msa0337330:CDS
AATACAAATAGTTATCCATC+TGG 0.427787 2_4:-57284746 Msa0337330:three_prime_UTR
TGTTGTGAGATAATGTTTGC+AGG 0.428403 2_4:-57289348 Msa0337330:exon
GAAGGGATGGATTAATCAAC+AGG 0.435221 2_4:-57285124 Msa0337330:CDS
GATATAATCAGACCCAAGTC+TGG 0.436740 2_4:+57285870 None:intergenic
GAGATAATGTTTGCAGGAAA+TGG 0.442808 2_4:-57289342 Msa0337330:exon
ATAATCCGTATTCGGAGAAC+AGG 0.448568 2_4:+57285376 None:intergenic
AGAACTTGGGCTTTCAATGA+TGG 0.449779 2_4:-57289057 Msa0337330:CDS
TACTGACTCTTCCCACCATA+TGG 0.450859 2_4:+57287676 None:intergenic
TCAAATGGGCATGGCAAGAA+GGG 0.452269 2_4:-57287651 Msa0337330:CDS
AATTATTGGGCATCCAGACT+TGG 0.454898 2_4:-57285883 Msa0337330:CDS
ATCATAGAAGAACGAATCAT+TGG 0.455387 2_4:+57287612 None:intergenic
TGTGTTGATCGACTTTCCGC+TGG 0.459954 2_4:+57285186 None:intergenic
ATGCTGACCGTGGGGAATGA+AGG 0.467308 2_4:-57285949 Msa0337330:CDS
TTCGTCAAATGCTGAAAACT+GGG 0.478082 2_4:-57289104 Msa0337330:CDS
TAGATCTCTCTCTTAGAACT+TGG 0.483874 2_4:+57289543 None:intergenic
CTGAAAACTGGGGCTAATAT+GGG 0.484284 2_4:-57289093 Msa0337330:CDS
GGAAGAGTCAGTATGTCAAA+TGG 0.484963 2_4:-57287666 Msa0337330:CDS
GACTTGGGTCTGATTATATC+CGG 0.485591 2_4:-57285867 Msa0337330:CDS
TTCATATCTACCCGGATCAA+TGG 0.488013 2_4:-57285810 Msa0337330:intron
AACTGAAATTTGTCAACAAG+TGG 0.489345 2_4:-57285446 Msa0337330:CDS
ACACAACTCAGTGAGATGAT+AGG 0.491985 2_4:+57284793 None:intergenic
TCTGCTAAGAGAAACAAGTC+TGG 0.492117 2_4:-57285279 Msa0337330:CDS
GTCAAATGGGCATGGCAAGA+AGG 0.494866 2_4:-57287652 Msa0337330:CDS
ATGCTTTCCCACATTGAAGA+TGG 0.497123 2_4:-57285423 Msa0337330:CDS
ACTCACTGTTTGTAGAACTT+GGG 0.499364 2_4:-57289070 Msa0337330:CDS
AAAGAAGCAAAACCCAAAAT+GGG 0.501043 2_4:+57289309 None:intergenic
CGTTGCATGACTGATCGTTC+CGG 0.503031 2_4:-57286375 Msa0337330:CDS
TGCCCAATAATTGGGGTTGA+CGG 0.509521 2_4:+57285894 None:intergenic
GCAAGTTATTTACTAAGCAA+AGG 0.522679 2_4:+57287701 None:intergenic
GGGACACAGTTTGTGTTGGA+TGG 0.524754 2_4:-57289204 Msa0337330:CDS
ATTATTGGGCATCCAGACTT+GGG 0.530301 2_4:-57285882 Msa0337330:CDS
TTTCCTGCAGGAGTGGATAG+AGG 0.531846 2_4:-57286010 Msa0337330:intron
TGTAATTCTTGAAATAACTA+CGG 0.536027 2_4:+57287581 None:intergenic
AAGAGAAACAAGTCTGGAGC+AGG 0.538235 2_4:-57285273 Msa0337330:CDS
ATCATCTCACTGAGTTGTGT+TGG 0.539441 2_4:-57284790 Msa0337330:three_prime_UTR
GAAGAGTCAGTATGTCAAAT+GGG 0.540890 2_4:-57287665 Msa0337330:CDS
CACCTCAGTTCATATCTACC+CGG 0.542770 2_4:-57285818 Msa0337330:CDS
TGATTTAAGTGACTACACAT+TGG 0.544263 2_4:-57285012 Msa0337330:three_prime_UTR
ACTTACTTGGAGAGTGTCGC+CGG 0.545828 2_4:+57286356 None:intergenic
GATTGGGCAAAGCGAAGGGA+TGG 0.552832 2_4:-57285137 Msa0337330:CDS
ATGCAGATTGGGCAAAGCGA+AGG 0.557745 2_4:-57285142 Msa0337330:CDS
TAAGAATGAGGAAATGATTG+AGG 0.558383 2_4:+57289721 None:intergenic
AAAGAGTGAAGCAAATAAAG+AGG 0.558705 2_4:-57289905 None:intergenic
AATAACTTGCAACCATATGG+TGG 0.566863 2_4:-57287688 Msa0337330:CDS
TTATGGTCCTAATGACCCAA+AGG 0.573542 2_4:-57285923 Msa0337330:CDS
TTATTTCAAGAATTACATCA+AGG 0.573575 2_4:-57287575 Msa0337330:intron
TTCTGCAGACTGTCTTGACA+AGG 0.576048 2_4:-57286470 Msa0337330:intron
GTCAGTATGTCAAATGGGCA+TGG 0.579900 2_4:-57287660 Msa0337330:CDS
TGCAGATTGGGCAAAGCGAA+GGG 0.579913 2_4:-57285141 Msa0337330:CDS
AATGCTCTTCAAATTTCACC+TGG 0.579990 2_4:-57289027 Msa0337330:CDS
GAGTGAAGCAAATAAAGAGG+TGG 0.580198 2_4:-57289902 None:intergenic
GTGTTGATCGACTTTCCGCT+GGG 0.580201 2_4:+57285187 None:intergenic
GTTTGGCAATTCTTAGTTGG+GGG 0.582836 2_4:-57285243 Msa0337330:CDS
TGGGCATGGCAAGAAGGGGT+AGG 0.584409 2_4:-57287646 Msa0337330:CDS
AAATGGGACACAGTTTGTGT+TGG 0.586472 2_4:-57289208 Msa0337330:CDS
ATAGAAGAACGAATCATTGG+AGG 0.587282 2_4:+57287615 None:intergenic
GCAATGCTTACCATTGATCC+GGG 0.587323 2_4:+57285800 None:intergenic
AAATTTGTACTGAATGAAGA+AGG 0.588806 2_4:+57289863 None:intergenic
GAGTGTATAGTGTGGTAGCA+TGG 0.589089 2_4:-57284947 Msa0337330:three_prime_UTR
TAGGTGAACAACTAAGAATG+AGG 0.589645 2_4:+57289709 None:intergenic
AGTTTGGCAATTCTTAGTTG+GGG 0.590382 2_4:-57285244 Msa0337330:CDS
CCGTATTCGGAGAACAGGAC+CGG 0.591091 2_4:+57285381 None:intergenic
AGTGAAGCAAATAAAGAGGT+GGG 0.592941 2_4:-57289901 None:intergenic
TTCATCGCCATCTTCAATGT+GGG 0.596395 2_4:+57285416 None:intergenic
GGACACAGTTTGTGTTGGAT+GGG 0.598899 2_4:-57289203 Msa0337330:CDS
GTCTGGATGCCCAATAATTG+GGG 0.607898 2_4:+57285887 None:intergenic
CGATGAAGTACTGAAGAAGC+CGG 0.608266 2_4:-57285400 Msa0337330:CDS
AAGAACCATATGCTGACCGT+GGG 0.609672 2_4:-57285958 Msa0337330:CDS
ATAACTTGCAACCATATGGT+GGG 0.615616 2_4:-57287687 Msa0337330:CDS
CTTCATCGCCATCTTCAATG+TGG 0.618456 2_4:+57285415 None:intergenic
AGTAATTGAGTGTGAGTGTG+AGG 0.621002 2_4:-57289458 Msa0337330:five_prime_UTR
ACTTGTTCATCAAAGTGACC+AGG 0.634282 2_4:+57289009 None:intergenic
GGAGTGGATAGAGGAAATGT+CGG 0.641246 2_4:-57286001 Msa0337330:CDS
TAGAAGTGAAACCGACGGTG+TGG 0.650208 2_4:+57289839 None:intergenic
ATGACTGAATTGAAACCAGA+TGG 0.650506 2_4:+57284731 None:intergenic
ATTACGTCATAGCAGAAGCA+AGG 0.656346 2_4:-57287744 Msa0337330:CDS
CAAATGGGCATGGCAAGAAG+GGG 0.658594 2_4:-57287650 Msa0337330:CDS
ATTTAAGTGACTACACATTG+GGG 0.670111 2_4:-57285010 Msa0337330:three_prime_UTR
ATAAAAGCCTTCATTCCCCA+CGG 0.670702 2_4:+57285942 None:intergenic
CAAGAACCATATGCTGACCG+TGG 0.671483 2_4:-57285959 Msa0337330:CDS
TGAGTTAGAAGTGAAACCGA+CGG 0.677252 2_4:+57289834 None:intergenic
TCGTCAAATGCTGAAAACTG+GGG 0.702936 2_4:-57289103 Msa0337330:CDS
ATCCGGGTAGATATGAACTG+AGG 0.729379 2_4:+57285816 None:intergenic
TGATTATGGAATCGTCCCAG+CGG 0.733894 2_4:-57285202 Msa0337330:CDS
GATTAGTTGAGTGTATAGTG+TGG 0.740109 2_4:-57284955 Msa0337330:three_prime_UTR
GAACGATCAGTCATGCAACG+AGG 0.746364 2_4:+57286378 None:intergenic
AGAACCATATGCTGACCGTG+GGG 0.750263 2_4:-57285957 Msa0337330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTGAAATATATAATAAAATA+AGG - chr2_4:57288521-57288540 Msa0337330:intron 10.0%
!! AATAAAATCTATTAGAAAAA+TGG - chr2_4:57289709-57289728 Msa0337330:five_prime_UTR 10.0%
!! ATTATTATTATGCTCAAAAA+TGG + chr2_4:57284780-57284799 None:intergenic 15.0%
!! TTATAAACAATTATAATCAC+AGG + chr2_4:57285902-57285921 None:intergenic 15.0%
!! AAAATTAAGTACTTGAAATT+TGG + chr2_4:57286497-57286516 None:intergenic 15.0%
!! TTTCTATTCTTCAAAAATAA+TGG + chr2_4:57286766-57286785 None:intergenic 15.0%
!!! ATTTAATAATACTTTTGTAC+TGG - chr2_4:57287199-57287218 Msa0337330:intron 15.0%
!!! TTTTTCTATAAACATTTGAA+GGG + chr2_4:57288255-57288274 None:intergenic 15.0%
!! TAGAAAAAATGGATAAAATT+TGG + chr2_4:57288473-57288492 None:intergenic 15.0%
!! TTATTATATATTTCACAACA+TGG + chr2_4:57288517-57288536 None:intergenic 15.0%
!!! TTAATTATAACTTTTTGCAT+AGG - chr2_4:57289068-57289087 Msa0337330:CDS 15.0%
!! AGGAAAGTTGAATTATTTAT+AGG + chr2_4:57284881-57284900 None:intergenic 20.0%
!! GTAGTAATGAGAAAATAATT+AGG + chr2_4:57284901-57284920 None:intergenic 20.0%
!!! CTTCTCTTAATACATTTTTT+TGG - chr2_4:57284941-57284960 Msa0337330:three_prime_UTR 20.0%
!!! AAAAAACCAAACTTTTTTTC+TGG - chr2_4:57285073-57285092 Msa0337330:three_prime_UTR 20.0%
!!! AAAAACCAAACTTTTTTTCT+GGG - chr2_4:57285074-57285093 Msa0337330:three_prime_UTR 20.0%
!!! GTTTTTATTTACATGTCTTT+TGG - chr2_4:57285286-57285305 Msa0337330:CDS 20.0%
!!! CATAAAAAACTAATTTGTGT+CGG + chr2_4:57285712-57285731 None:intergenic 20.0%
!!! TGACTTGTTTTTTGTTTTTT+GGG - chr2_4:57285750-57285769 Msa0337330:intron 20.0%
!! TGTTTATAATAATGGTATCT+TGG - chr2_4:57285913-57285932 Msa0337330:CDS 20.0%
!! AAAATGGTTAAATTCATGTT+TGG - chr2_4:57286051-57286070 Msa0337330:intron 20.0%
!! AAGTAAAACATAAATCTCTA+AGG + chr2_4:57286536-57286555 None:intergenic 20.0%
!! TGTAATTCTTGAAATAACTA+CGG + chr2_4:57286990-57287009 None:intergenic 20.0%
!! TTATTTCAAGAATTACATCA+AGG - chr2_4:57286993-57287012 Msa0337330:intron 20.0%
!! AGTTATCATATGACAATTAA+AGG + chr2_4:57287175-57287194 None:intergenic 20.0%
!! TTATTATTCTTAAACTCAGT+AGG - chr2_4:57287230-57287249 Msa0337330:intron 20.0%
!!! ATACTTCTTTTACTCAATAA+AGG - chr2_4:57287662-57287681 Msa0337330:CDS 20.0%
!!! CTTTTTCTATAAACATTTGA+AGG + chr2_4:57288256-57288275 None:intergenic 20.0%
!! AATCATTCCAAATTGAAATT+AGG + chr2_4:57289597-57289616 None:intergenic 20.0%
! AAATTTGTACTGAATGAAGA+AGG + chr2_4:57284708-57284727 None:intergenic 25.0%
! TCAAAAATGGACAAAATTAG+CGG + chr2_4:57284767-57284786 None:intergenic 25.0%
!! TCATTAAAGTTAGTGTCTTT+TGG - chr2_4:57284986-57285005 Msa0337330:three_prime_UTR 25.0%
!!! CTTTTGATTTTTTCCTCAAA+GGG + chr2_4:57285172-57285191 None:intergenic 25.0%
!! CTTTGAGGAAAAAATCAAAA+GGG - chr2_4:57285171-57285190 Msa0337330:CDS 25.0%
!! TTTATTTACATGTCTTTTGG+AGG - chr2_4:57285289-57285308 Msa0337330:CDS 25.0%
!! TTATTTACATGTCTTTTGGA+GGG - chr2_4:57285290-57285309 Msa0337330:CDS 25.0%
!!! TTAAGGTTTAGTTTTGAAGA+AGG - chr2_4:57285313-57285332 Msa0337330:CDS 25.0%
!!! TAAGGTTTAGTTTTGAAGAA+GGG - chr2_4:57285314-57285333 Msa0337330:CDS 25.0%
! ACATAATCAGAACAAATCAT+AGG + chr2_4:57285653-57285672 None:intergenic 25.0%
! AACAACATGAAACAATGAAA+GGG + chr2_4:57285685-57285704 None:intergenic 25.0%
!!! GTGACTTGTTTTTTGTTTTT+TGG - chr2_4:57285749-57285768 Msa0337330:intron 25.0%
!!! GACTTGTTTTTTGTTTTTTG+GGG - chr2_4:57285751-57285770 Msa0337330:intron 25.0%
! TTATAATAATGGTATCTTGG+TGG - chr2_4:57285916-57285935 Msa0337330:CDS 25.0%
! TATAATAATGGTATCTTGGT+GGG - chr2_4:57285917-57285936 Msa0337330:CDS 25.0%
! AGATACCTAGTTTATTAGTT+TGG + chr2_4:57285953-57285972 None:intergenic 25.0%
!! AATAAACTAGGTATCTTTTG+TGG - chr2_4:57285957-57285976 Msa0337330:CDS 25.0%
!! TACCTAGTAAACACAATTTT+AGG + chr2_4:57286337-57286356 None:intergenic 25.0%
!!! CAGATTTTTTTTTTATGACC+AGG + chr2_4:57286648-57286667 None:intergenic 25.0%
! AAAACTTTCTTTCCTTCAAT+CGG + chr2_4:57286686-57286705 None:intergenic 25.0%
! ATAGAAATTATGCTGAACTA+AGG - chr2_4:57286779-57286798 Msa0337330:intron 25.0%
!! CTGACATAATGACTTTAAAA+AGG + chr2_4:57287135-57287154 None:intergenic 25.0%
! GAAGATTGAATCAAATATAC+AGG - chr2_4:57287388-57287407 Msa0337330:intron 25.0%
!! AAAACTTGTTTCCTTAAGTA+AGG + chr2_4:57287589-57287608 None:intergenic 25.0%
!! TTACTTAAGGAAACAAGTTT+TGG - chr2_4:57287588-57287607 Msa0337330:CDS 25.0%
! TCAATGAAGCTTGAAAAATA+AGG + chr2_4:57287799-57287818 None:intergenic 25.0%
! GTCATTTCTATATTCAATTC+CGG + chr2_4:57288137-57288156 None:intergenic 25.0%
! GCAGTATCAAATAGAAAAAA+TGG + chr2_4:57288484-57288503 None:intergenic 25.0%
!! GAAATCAATATCAGAGATTT+TGG + chr2_4:57288731-57288750 None:intergenic 25.0%
! AGAAGTAAGAAAAGGTTATA+AGG - chr2_4:57288945-57288964 Msa0337330:intron 25.0%
! GAAGTAAGAAAAGGTTATAA+GGG - chr2_4:57288946-57288965 Msa0337330:intron 25.0%
!!! CTTTTTTGATAATCCGTATT+CGG + chr2_4:57289203-57289222 None:intergenic 25.0%
!! TTGTTTCATACATCTTTTCT+CGG + chr2_4:57289249-57289268 None:intergenic 25.0%
! TATAAAACAATCATGCAGAT+TGG - chr2_4:57289414-57289433 Msa0337330:five_prime_UTR 25.0%
! ATAAAACAATCATGCAGATT+GGG - chr2_4:57289415-57289434 Msa0337330:five_prime_UTR 25.0%
! TTTGTTAGCAAAAAAAGAAG+TGG - chr2_4:57289485-57289504 Msa0337330:five_prime_UTR 25.0%
! AAAAAAAGTTGACTACAGTA+TGG - chr2_4:57289509-57289528 Msa0337330:five_prime_UTR 25.0%
! GCAATATCCTAATTTCAATT+TGG - chr2_4:57289587-57289606 Msa0337330:five_prime_UTR 25.0%
! AATACAAATAGTTATCCATC+TGG - chr2_4:57289822-57289841 Msa0337330:five_prime_UTR 25.0%
TAAGAATGAGGAAATGATTG+AGG + chr2_4:57284850-57284869 None:intergenic 30.0%
!! ATCTAGACATTTTAGCCAAT+TGG - chr2_4:57285043-57285062 Msa0337330:three_prime_UTR 30.0%
!! TCTAGACATTTTAGCCAATT+GGG - chr2_4:57285044-57285063 Msa0337330:three_prime_UTR 30.0%
ACAAACCCAGAAAAAAAGTT+TGG + chr2_4:57285082-57285101 None:intergenic 30.0%
!!! AAACTTTTTTTCTGGGTTTG+TGG - chr2_4:57285081-57285100 Msa0337330:exon 30.0%
!!! CCTTTTGATTTTTTCCTCAA+AGG + chr2_4:57285173-57285192 None:intergenic 30.0%
! CCTTTGAGGAAAAAATCAAA+AGG - chr2_4:57285170-57285189 Msa0337330:CDS 30.0%
!!! TGGTTTGTTTTATCCCATTT+TGG - chr2_4:57285246-57285265 Msa0337330:CDS 30.0%
!!! GGTTTGTTTTATCCCATTTT+GGG - chr2_4:57285247-57285266 Msa0337330:CDS 30.0%
AAAGAAGCAAAACCCAAAAT+GGG + chr2_4:57285262-57285281 None:intergenic 30.0%
AAAAGAAGCAAAACCCAAAA+TGG + chr2_4:57285263-57285282 None:intergenic 30.0%
! GGAATGTGTTTTATGTGAAT+GGG - chr2_4:57285386-57285405 Msa0337330:CDS 30.0%
! CTTTGATGAACAAGTTTTTC+AGG - chr2_4:57285567-57285586 Msa0337330:intron 30.0%
CAACAACATGAAACAATGAA+AGG + chr2_4:57285686-57285705 None:intergenic 30.0%
AGTTATGTACTTGTTCCTTT+AGG - chr2_4:57286024-57286043 Msa0337330:intron 30.0%
GTTATGTACTTGTTCCTTTA+GGG - chr2_4:57286025-57286044 Msa0337330:intron 30.0%
! TTAACCATTTTCAACCCTAA+AGG + chr2_4:57286042-57286061 None:intergenic 30.0%
GACATGTACTTAGTTAATTG+AGG - chr2_4:57286194-57286213 Msa0337330:intron 30.0%
CTCCTAAAATTGTGTTTACT+AGG - chr2_4:57286332-57286351 Msa0337330:intron 30.0%
AATTGTGTTTACTAGGTAGA+TGG - chr2_4:57286339-57286358 Msa0337330:intron 30.0%
TTATGACCAGGAATTGAAAT+CGG + chr2_4:57286636-57286655 None:intergenic 30.0%
AAACTTTCTTTCCTTCAATC+GGG + chr2_4:57286685-57286704 None:intergenic 30.0%
AATTATGCTGAACTAAGGAT+TGG - chr2_4:57286784-57286803 Msa0337330:intron 30.0%
GCAAGTTATTTACTAAGCAA+AGG + chr2_4:57286870-57286889 None:intergenic 30.0%
! GTAAATAACTTGCAACCATA+TGG - chr2_4:57286877-57286896 Msa0337330:intron 30.0%
ATCATAGAAGAACGAATCAT+TGG + chr2_4:57286959-57286978 None:intergenic 30.0%
! TTGAAATAACTACGGATTGA+TGG + chr2_4:57286982-57287001 None:intergenic 30.0%
! AATTAAAGGCATACAACATG+TGG + chr2_4:57287161-57287180 None:intergenic 30.0%
AACTCCTATGTCAGATAAAA+TGG + chr2_4:57287336-57287355 None:intergenic 30.0%
! GAATCAAATATACAGGCTTT+TGG - chr2_4:57287395-57287414 Msa0337330:intron 30.0%
TATGACCTAAACGGTAAAAA+AGG + chr2_4:57287442-57287461 None:intergenic 30.0%
ACTAATATCCGAATGTTGTT+GGG - chr2_4:57287493-57287512 Msa0337330:intron 30.0%
AATAAAGGAGTAGTGAGAAA+GGG - chr2_4:57287677-57287696 Msa0337330:CDS 30.0%
ATACGTAAGAAAACAGAAAG+TGG + chr2_4:57287862-57287881 None:intergenic 30.0%
ATGAAGAAGAAATTTGACCT+AGG + chr2_4:57287969-57287988 None:intergenic 30.0%
ACAAGGAAAAATTCTTTCAC+CGG - chr2_4:57288115-57288134 Msa0337330:intron 30.0%
TTCTATAAACATTTGAAGGG+TGG + chr2_4:57288252-57288271 None:intergenic 30.0%
! GAACTTTTTAATCTCCTCAT+GGG + chr2_4:57288329-57288348 None:intergenic 30.0%
! TGAACTTTTTAATCTCCTCA+TGG + chr2_4:57288330-57288349 None:intergenic 30.0%
! AATTTTGCCATATTCAGTTG+TGG + chr2_4:57288410-57288429 None:intergenic 30.0%
ACAACTGAATATGGCAAAAT+TGG - chr2_4:57288409-57288428 Msa0337330:intron 30.0%
TCATTTATGCTCAAAGTCAT+TGG - chr2_4:57288828-57288847 Msa0337330:intron 30.0%
CATTTATGCTCAAAGTCATT+GGG - chr2_4:57288829-57288848 Msa0337330:intron 30.0%
CAAAATTTCCACTATGAGTA+GGG - chr2_4:57288859-57288878 Msa0337330:intron 30.0%
! TAGGGTAAAAGTATGTGTTA+TGG - chr2_4:57288877-57288896 Msa0337330:intron 30.0%
! AGGGTAAAAGTATGTGTTAT+GGG - chr2_4:57288878-57288897 Msa0337330:intron 30.0%
! AAAAGTATGTGTTATGGGTA+TGG - chr2_4:57288883-57288902 Msa0337330:intron 30.0%
AAAGTATGTGTTATGGGTAT+GGG - chr2_4:57288884-57288903 Msa0337330:intron 30.0%
! TTCCCTTTTAGATTTGTCTT+CGG - chr2_4:57289030-57289049 Msa0337330:CDS 30.0%
AACTGAAATTTGTCAACAAG+TGG - chr2_4:57289122-57289141 Msa0337330:CDS 30.0%
! TTAGTTTGGCAATTCTTAGT+TGG - chr2_4:57289322-57289341 Msa0337330:CDS 30.0%
TAGTTTGGCAATTCTTAGTT+GGG - chr2_4:57289323-57289342 Msa0337330:CDS 30.0%
GAGGAATATTCTGATGATTA+TGG - chr2_4:57289352-57289371 Msa0337330:exon 30.0%
TGATTTAAGTGACTACACAT+TGG - chr2_4:57289556-57289575 Msa0337330:five_prime_UTR 30.0%
GATTTAAGTGACTACACATT+GGG - chr2_4:57289557-57289576 Msa0337330:five_prime_UTR 30.0%
ATTTAAGTGACTACACATTG+GGG - chr2_4:57289558-57289577 Msa0337330:five_prime_UTR 30.0%
! TGCTTCTTTTCACTTCTTTG+AGG - chr2_4:57284807-57284826 Msa0337330:three_prime_UTR 35.0%
TAGGTGAACAACTAAGAATG+AGG + chr2_4:57284862-57284881 None:intergenic 35.0%
TAGATCTCTCTCTTAGAACT+TGG + chr2_4:57285028-57285047 None:intergenic 35.0%
!!! GGTTTTTTTGACAACCCAAT+TGG + chr2_4:57285061-57285080 None:intergenic 35.0%
ACTAATTTAGTGACCCTTTG+AGG - chr2_4:57285156-57285175 Msa0337330:CDS 35.0%
TGTTGTGAGATAATGTTTGC+AGG - chr2_4:57285220-57285239 Msa0337330:CDS 35.0%
GAGATAATGTTTGCAGGAAA+TGG - chr2_4:57285226-57285245 Msa0337330:CDS 35.0%
!! TTTGGGTTTTGCTTCTTTTG+TGG - chr2_4:57285264-57285283 Msa0337330:CDS 35.0%
!! TTTTGAAGAAGGGAGAGAAA+TGG - chr2_4:57285324-57285343 Msa0337330:CDS 35.0%
TTTGAAGAAGGGAGAGAAAT+GGG - chr2_4:57285325-57285344 Msa0337330:CDS 35.0%
!! ATGGGTTTTGTGATGAGAAA+TGG - chr2_4:57285343-57285362 Msa0337330:CDS 35.0%
!! TGGGTTTTGTGATGAGAAAT+GGG - chr2_4:57285344-57285363 Msa0337330:CDS 35.0%
! GGGAATGTGTTTTATGTGAA+TGG - chr2_4:57285385-57285404 Msa0337330:CDS 35.0%
! ATGTGTTTTATGTGAATGGG+TGG - chr2_4:57285389-57285408 Msa0337330:CDS 35.0%
TGAATGGGTGGAATTCTTAT+TGG - chr2_4:57285401-57285420 Msa0337330:CDS 35.0%
! GTGGAATTCTTATTGGTTGA+TGG - chr2_4:57285408-57285427 Msa0337330:CDS 35.0%
TTCGTCAAATGCTGAAAACT+GGG - chr2_4:57285464-57285483 Msa0337330:CDS 35.0%
ACTCACTGTTTGTAGAACTT+GGG - chr2_4:57285498-57285517 Msa0337330:intron 35.0%
AATGCTCTTCAAATTTCACC+TGG - chr2_4:57285541-57285560 Msa0337330:intron 35.0%
! GTTTGTAGCTCTTGATTTTC+TGG - chr2_4:57285606-57285625 Msa0337330:intron 35.0%
! ACTCAGTCATGCACAATTTT+AGG + chr2_4:57285834-57285853 None:intergenic 35.0%
TGAGTGTGATTATGTCTCAT+AGG - chr2_4:57285849-57285868 Msa0337330:CDS 35.0%
AGGGACCAAACTAATAAACT+AGG - chr2_4:57285945-57285964 Msa0337330:CDS 35.0%
!! TGTTCCTTTAGGGTTGAAAA+TGG - chr2_4:57286035-57286054 Msa0337330:intron 35.0%
GGTAGAATACAGAGAAAAAG+TGG - chr2_4:57286244-57286263 Msa0337330:intron 35.0%
! TTTTGTCCATCATGAAACCT+GGG - chr2_4:57286405-57286424 Msa0337330:CDS 35.0%
TGGGAAATTGACCCAAAAAA+CGG - chr2_4:57286424-57286443 Msa0337330:CDS 35.0%
TAATATGTCCTTTATGACCG+AGG - chr2_4:57286555-57286574 Msa0337330:intron 35.0%
TTTCTGTTATACCCGATTGA+AGG - chr2_4:57286671-57286690 Msa0337330:intron 35.0%
AAGCAAGGCAAAATGGAATA+AGG - chr2_4:57286839-57286858 Msa0337330:intron 35.0%
! AATAACTTGCAACCATATGG+TGG - chr2_4:57286880-57286899 Msa0337330:intron 35.0%
! ATAACTTGCAACCATATGGT+GGG - chr2_4:57286881-57286900 Msa0337330:intron 35.0%
GAAGAGTCAGTATGTCAAAT+GGG - chr2_4:57286903-57286922 Msa0337330:intron 35.0%
ATAGAAGAACGAATCATTGG+AGG + chr2_4:57286956-57286975 None:intergenic 35.0%
ACACAAGCCATAGAAAACAT+AGG + chr2_4:57287256-57287275 None:intergenic 35.0%
CTATGTCAGATAAAATGGTC+TGG + chr2_4:57287331-57287350 None:intergenic 35.0%
! CAGACCATTTTATCTGACAT+AGG - chr2_4:57287329-57287348 Msa0337330:intron 35.0%
!!! TGGTACCTTTTTTACCGTTT+AGG - chr2_4:57287434-57287453 Msa0337330:intron 35.0%
CCTATGTTCTATGACCTAAA+CGG + chr2_4:57287451-57287470 None:intergenic 35.0%
TAGTCAGAGTCTAACGTTAT+CGG + chr2_4:57287477-57287496 None:intergenic 35.0%
GACTAATATCCGAATGTTGT+TGG - chr2_4:57287492-57287511 Msa0337330:intron 35.0%
TAGATGGGAAAAATACCATC+GGG + chr2_4:57287548-57287567 None:intergenic 35.0%
GTAGATGGGAAAAATACCAT+CGG + chr2_4:57287549-57287568 None:intergenic 35.0%
! ATTTTTCCCATCTACAAGAC+TGG - chr2_4:57287554-57287573 Msa0337330:intron 35.0%
CAATAAAGGAGTAGTGAGAA+AGG - chr2_4:57287676-57287695 Msa0337330:CDS 35.0%
CTGTGAAGCAAAGAATTAGA+CGG - chr2_4:57287730-57287749 Msa0337330:CDS 35.0%
! AAAGGAAGAAAGGTATGCAT+TGG + chr2_4:57287756-57287775 None:intergenic 35.0%
AAGGTTAAGAATTTGCGTGT+GGG + chr2_4:57287780-57287799 None:intergenic 35.0%
TAAGGTTAAGAATTTGCGTG+TGG + chr2_4:57287781-57287800 None:intergenic 35.0%
! ACCTGTTTCCTTTAACGTTT+TGG - chr2_4:57287831-57287850 Msa0337330:intron 35.0%
ACCAAAACGTTAAAGGAAAC+AGG + chr2_4:57287835-57287854 None:intergenic 35.0%
TGGTGAAACCAAAACGTTAA+AGG + chr2_4:57287842-57287861 None:intergenic 35.0%
CCAAAGATACAAGCTTCATA+TGG + chr2_4:57287942-57287961 None:intergenic 35.0%
CCATATGAAGCTTGTATCTT+TGG - chr2_4:57287939-57287958 Msa0337330:intron 35.0%
!!! CTTGTATCTTTGGTTTTCCT+AGG - chr2_4:57287949-57287968 Msa0337330:intron 35.0%
!!! AGGATGCTATTAGTTTTCGA+AGG + chr2_4:57288071-57288090 None:intergenic 35.0%
AATCAATTCCCAGCCAAAAA+TGG + chr2_4:57288164-57288183 None:intergenic 35.0%
!! ATTATTTGTTGACTCCCATG+AGG - chr2_4:57288312-57288331 Msa0337330:intron 35.0%
GATCTCTAATGAACTTGTCA+TGG - chr2_4:57288373-57288392 Msa0337330:intron 35.0%
TTTCTCTCCACAACTGAATA+TGG - chr2_4:57288400-57288419 Msa0337330:intron 35.0%
AGAATCCTTCGTATTGAACT+TGG + chr2_4:57288446-57288465 None:intergenic 35.0%
AATGTTGAAATCTTTCCTGC+AGG - chr2_4:57288546-57288565 Msa0337330:intron 35.0%
!!! TATCAGAGATTTTGGAGTTC+CGG + chr2_4:57288723-57288742 None:intergenic 35.0%
AGCATTGCTTGAACTTTGTA+AGG - chr2_4:57288783-57288802 Msa0337330:intron 35.0%
!! CTCATAGTGGAAATTTTGGT+CGG + chr2_4:57288857-57288876 None:intergenic 35.0%
!! CCTACTCATAGTGGAAATTT+TGG + chr2_4:57288861-57288880 None:intergenic 35.0%
CCAAAATTTCCACTATGAGT+AGG - chr2_4:57288858-57288877 Msa0337330:intron 35.0%
! TACTTTTACCCTACTCATAG+TGG + chr2_4:57288870-57288889 None:intergenic 35.0%
! TAACCTTTTCTTACTTCTGC+AGG + chr2_4:57288943-57288962 None:intergenic 35.0%
! TTCATACATCTTTTCTCGGT+CGG + chr2_4:57289245-57289264 None:intergenic 35.0%
AGTTTGGCAATTCTTAGTTG+GGG - chr2_4:57289324-57289343 Msa0337330:CDS 35.0%
CAGTATGGAATAGAGATATC+TGG - chr2_4:57289524-57289543 Msa0337330:five_prime_UTR 35.0%
! GATTAGTTGAGTGTATAGTG+TGG - chr2_4:57289613-57289632 Msa0337330:five_prime_UTR 35.0%
ATGACTGAATTGAAACCAGA+TGG + chr2_4:57289840-57289859 None:intergenic 35.0%
! GTACAAATTTTCCACACCGT+CGG - chr2_4:57284718-57284737 Msa0337330:three_prime_UTR 40.0%
TGAGTTAGAAGTGAAACCGA+CGG + chr2_4:57284737-57284756 None:intergenic 40.0%
AGTAATTGAGTGTGAGTGTG+AGG - chr2_4:57285110-57285129 Msa0337330:CDS 40.0%
!! ACATGTCTTTTGGAGGGTTA+AGG - chr2_4:57285296-57285315 Msa0337330:CDS 40.0%
AAATGGGACACAGTTTGTGT+TGG - chr2_4:57285360-57285379 Msa0337330:CDS 40.0%
! CGATTTTTCGTCGCGATTTA+AGG - chr2_4:57285441-57285460 Msa0337330:CDS 40.0%
GTTCGTCAAATGCTGAAAAC+TGG - chr2_4:57285463-57285482 Msa0337330:CDS 40.0%
TCGTCAAATGCTGAAAACTG+GGG - chr2_4:57285465-57285484 Msa0337330:CDS 40.0%
CTGAAAACTGGGGCTAATAT+GGG - chr2_4:57285475-57285494 Msa0337330:CDS 40.0%
GACTCACTGTTTGTAGAACT+TGG - chr2_4:57285497-57285516 Msa0337330:intron 40.0%
AGAACTTGGGCTTTCAATGA+TGG - chr2_4:57285511-57285530 Msa0337330:intron 40.0%
ACTTGTTCATCAAAGTGACC+AGG + chr2_4:57285562-57285581 None:intergenic 40.0%
TTATGTGTGAGTGTGTGTTG+TGG - chr2_4:57285727-57285746 Msa0337330:intron 40.0%
! AAGAGTGCACAAACTGAGTA+GGG + chr2_4:57285809-57285828 None:intergenic 40.0%
! AAAGAGTGCACAAACTGAGT+AGG + chr2_4:57285810-57285829 None:intergenic 40.0%
CTCATAGGTCTTTGCAAAAG+TGG - chr2_4:57285864-57285883 Msa0337330:CDS 40.0%
ATAATGGTATCTTGGTGGGA+AGG - chr2_4:57285921-57285940 Msa0337330:CDS 40.0%
AGCATTTGCCAAAATCACAG+TGG + chr2_4:57286109-57286128 None:intergenic 40.0%
CTGTGAGTTTGGCAAATTCA+TGG + chr2_4:57286166-57286185 None:intergenic 40.0%
GTCTGAATTGACTGTGAGTT+TGG + chr2_4:57286177-57286196 None:intergenic 40.0%
ACTGAGTTACCATCGTTTCT+GGG - chr2_4:57286217-57286236 Msa0337330:intron 40.0%
GGATCTGACAAGCAATATGT+TGG - chr2_4:57286360-57286379 Msa0337330:intron 40.0%
!! CAGGTTTCATGATGGACAAA+AGG + chr2_4:57286406-57286425 None:intergenic 40.0%
! CTTTTGTCCATCATGAAACC+TGG - chr2_4:57286404-57286423 Msa0337330:CDS 40.0%
CAATTTCCCAGGTTTCATGA+TGG + chr2_4:57286414-57286433 None:intergenic 40.0%
!!! GTTTTTTGGGTCAATTTCCC+AGG + chr2_4:57286425-57286444 None:intergenic 40.0%
ATTGACCCAAAAAACGGTGT+CGG - chr2_4:57286430-57286449 Msa0337330:CDS 40.0%
!!! AAACACCGACACCGTTTTTT+GGG + chr2_4:57286438-57286457 None:intergenic 40.0%
!! TGGAAGTGTTGTGAACTTCA+GGG - chr2_4:57286607-57286626 Msa0337330:intron 40.0%
! ACTAAGGATTGGTATGTGAC+AGG - chr2_4:57286795-57286814 Msa0337330:intron 40.0%
ATTACGTCATAGCAGAAGCA+AGG - chr2_4:57286824-57286843 Msa0337330:intron 40.0%
ATAGCAGAAGCAAGGCAAAA+TGG - chr2_4:57286832-57286851 Msa0337330:intron 40.0%
GGAAGAGTCAGTATGTCAAA+TGG - chr2_4:57286902-57286921 Msa0337330:intron 40.0%
GAGGAAAGGAGAAAGAGAAA+AGG + chr2_4:57287048-57287067 None:intergenic 40.0%
! CAGTAGGCCTATGTTTTCTA+TGG - chr2_4:57287246-57287265 Msa0337330:intron 40.0%
!! GGTAAAAAAGGTACCATCAC+TGG + chr2_4:57287430-57287449 None:intergenic 40.0%
CCGTTTAGGTCATAGAACAT+AGG - chr2_4:57287448-57287467 Msa0337330:intron 40.0%
! CAAGTTCCAGTCTTGTAGAT+GGG + chr2_4:57287563-57287582 None:intergenic 40.0%
! TCAAGTTCCAGTCTTGTAGA+TGG + chr2_4:57287564-57287583 None:intergenic 40.0%
GGAACTTGAGACCTTACTTA+AGG - chr2_4:57287575-57287594 Msa0337330:intron 40.0%
!!! GAAACAAGTTTTGGTGTCAC+TGG - chr2_4:57287597-57287616 Msa0337330:CDS 40.0%
AAGAATTTGCGTGTGGGAAA+AGG + chr2_4:57287774-57287793 None:intergenic 40.0%
CAAGCTTCATATGGAAGTCA+TGG + chr2_4:57287933-57287952 None:intergenic 40.0%
! TTTTCGAAGGATAGCCTCAA+GGG + chr2_4:57288058-57288077 None:intergenic 40.0%
ACAGTCTGCAGAAAACTCAA+AGG + chr2_4:57288091-57288110 None:intergenic 40.0%
! AGAAATGACCCCACCATTTT+TGG - chr2_4:57288148-57288167 Msa0337330:intron 40.0%
AATTCCCAGCCAAAAATGGT+GGG + chr2_4:57288160-57288179 None:intergenic 40.0%
TGTCACCAAGTTCAATACGA+AGG - chr2_4:57288438-57288457 Msa0337330:intron 40.0%
ATAAAAGCCTTCATTCCCCA+CGG + chr2_4:57288629-57288648 None:intergenic 40.0%
TTATGGTCCTAATGACCCAA+AGG - chr2_4:57288645-57288664 Msa0337330:intron 40.0%
GTCAAATCCTTTGGGTCATT+AGG + chr2_4:57288655-57288674 None:intergenic 40.0%
AGTCTGGATGCCCAATAATT+GGG + chr2_4:57288685-57288704 None:intergenic 40.0%
AAGTCTGGATGCCCAATAAT+TGG + chr2_4:57288686-57288705 None:intergenic 40.0%
AATTATTGGGCATCCAGACT+TGG - chr2_4:57288685-57288704 Msa0337330:intron 40.0%
ATTATTGGGCATCCAGACTT+GGG - chr2_4:57288686-57288705 Msa0337330:intron 40.0%
GATATAATCAGACCCAAGTC+TGG + chr2_4:57288701-57288720 None:intergenic 40.0%
GACTTGGGTCTGATTATATC+CGG - chr2_4:57288701-57288720 Msa0337330:intron 40.0%
TTCATATCTACCCGGATCAA+TGG - chr2_4:57288758-57288777 Msa0337330:intron 40.0%
AGCAATGCTTACCATTGATC+CGG + chr2_4:57288772-57288791 None:intergenic 40.0%
GTTGTGTTACAGTTTCAGAG+TGG + chr2_4:57288921-57288940 None:intergenic 40.0%
CAACCTGCAGAAGTAAGAAA+AGG - chr2_4:57288937-57288956 Msa0337330:intron 40.0%
CGCCGAAGACAAATCTAAAA+GGG + chr2_4:57289035-57289054 None:intergenic 40.0%
ACGCCGAAGACAAATCTAAA+AGG + chr2_4:57289036-57289055 None:intergenic 40.0%
! CTTTTTGCATAGGTTTCACG+AGG - chr2_4:57289078-57289097 Msa0337330:CDS 40.0%
ATGCTTTCCCACATTGAAGA+TGG - chr2_4:57289145-57289164 Msa0337330:CDS 40.0%
TTCATCGCCATCTTCAATGT+GGG + chr2_4:57289155-57289174 None:intergenic 40.0%
ATAATCCGTATTCGGAGAAC+AGG + chr2_4:57289195-57289214 None:intergenic 40.0%
TCTGCTAAGAGAAACAAGTC+TGG - chr2_4:57289289-57289308 Msa0337330:CDS 40.0%
GTTTGGCAATTCTTAGTTGG+GGG - chr2_4:57289325-57289344 Msa0337330:CDS 40.0%
!! GAAGGGATGGATTAATCAAC+AGG - chr2_4:57289444-57289463 Msa0337330:five_prime_UTR 40.0%
ACACAACTCAGTGAGATGAT+AGG + chr2_4:57289778-57289797 None:intergenic 40.0%
ATCATCTCACTGAGTTGTGT+TGG - chr2_4:57289778-57289797 Msa0337330:five_prime_UTR 40.0%
GGACACAGTTTGTGTTGGAT+GGG - chr2_4:57285365-57285384 Msa0337330:CDS 45.0%
GCTGAAAACTGGGGCTAATA+TGG - chr2_4:57285474-57285493 Msa0337330:CDS 45.0%
GACTGAGTTACCATCGTTTC+TGG - chr2_4:57286216-57286235 Msa0337330:intron 45.0%
! TTACCATCGTTTCTGGGAAG+TGG - chr2_4:57286223-57286242 Msa0337330:intron 45.0%
!!! GAAACACCGACACCGTTTTT+TGG + chr2_4:57286439-57286458 None:intergenic 45.0%
!! GTGGAAGTGTTGTGAACTTC+AGG - chr2_4:57286606-57286625 Msa0337330:intron 45.0%
!! GGAAGTGTTGTGAACTTCAG+GGG - chr2_4:57286608-57286627 Msa0337330:intron 45.0%
GATTGGTATGTGACAGGCTT+TGG - chr2_4:57286801-57286820 Msa0337330:intron 45.0%
!! TACTGACTCTTCCCACCATA+TGG + chr2_4:57286895-57286914 None:intergenic 45.0%
GTCAGTATGTCAAATGGGCA+TGG - chr2_4:57286908-57286927 Msa0337330:intron 45.0%
TCAAATGGGCATGGCAAGAA+GGG - chr2_4:57286917-57286936 Msa0337330:intron 45.0%
GGTAAAGAGAAAGGGAGGAA+AGG + chr2_4:57287062-57287081 None:intergenic 45.0%
TTGGAAGTTGAGACCAGTGA+TGG - chr2_4:57287414-57287433 Msa0337330:intron 45.0%
ATCCGAATGTTGTTGGGAAG+AGG - chr2_4:57287499-57287518 Msa0337330:intron 45.0%
AGAGCTTACCCTCCTTTATG+GGG + chr2_4:57287525-57287544 None:intergenic 45.0%
GAGAGCTTACCCTCCTTTAT+GGG + chr2_4:57287526-57287545 None:intergenic 45.0%
! GTTTTCGAAGGATAGCCTCA+AGG + chr2_4:57288059-57288078 None:intergenic 45.0%
TTCTGCAGACTGTCTTGACA+AGG - chr2_4:57288098-57288117 Msa0337330:intron 45.0%
ATTCCCAGCCAAAAATGGTG+GGG + chr2_4:57288159-57288178 None:intergenic 45.0%
CAATTCCCAGCCAAAAATGG+TGG + chr2_4:57288161-57288180 None:intergenic 45.0%
TGAAATCTTTCCTGCAGGAG+TGG - chr2_4:57288551-57288570 Msa0337330:intron 45.0%
GGAGTGGATAGAGGAAATGT+CGG - chr2_4:57288567-57288586 Msa0337330:intron 45.0%
AAGAACCATATGCTGACCGT+GGG - chr2_4:57288610-57288629 Msa0337330:intron 45.0%
! GTGGGGAATGAAGGCTTTTA+TGG - chr2_4:57288628-57288647 Msa0337330:intron 45.0%
GGTTGACGGTCAAATCCTTT+GGG + chr2_4:57288663-57288682 None:intergenic 45.0%
TGACCGTCAACCCCAATTAT+TGG - chr2_4:57288671-57288690 Msa0337330:intron 45.0%
GACCGTCAACCCCAATTATT+GGG - chr2_4:57288672-57288691 Msa0337330:intron 45.0%
TGCCCAATAATTGGGGTTGA+CGG + chr2_4:57288677-57288696 None:intergenic 45.0%
GTCTGGATGCCCAATAATTG+GGG + chr2_4:57288684-57288703 None:intergenic 45.0%
CACCTCAGTTCATATCTACC+CGG - chr2_4:57288750-57288769 Msa0337330:intron 45.0%
ATCCGGGTAGATATGAACTG+AGG + chr2_4:57288755-57288774 None:intergenic 45.0%
GCAATGCTTACCATTGATCC+GGG + chr2_4:57288771-57288790 None:intergenic 45.0%
CTTCATCGCCATCTTCAATG+TGG + chr2_4:57289156-57289175 None:intergenic 45.0%
!! CGATGAAGTACTGAAGAAGC+CGG - chr2_4:57289168-57289187 Msa0337330:CDS 45.0%
GGTCGGATACAGTGAAATTC+TGG + chr2_4:57289228-57289247 None:intergenic 45.0%
! AAGAGAAACAAGTCTGGAGC+AGG - chr2_4:57289295-57289314 Msa0337330:CDS 45.0%
GCAATTCTTAGTTGGGGGAA+TGG - chr2_4:57289330-57289349 Msa0337330:CDS 45.0%
ATTCTTAGTTGGGGGAATGG+AGG - chr2_4:57289333-57289352 Msa0337330:CDS 45.0%
TGATTATGGAATCGTCCCAG+CGG - chr2_4:57289366-57289385 Msa0337330:five_prime_UTR 45.0%
GAGTGTATAGTGTGGTAGCA+TGG - chr2_4:57289621-57289640 Msa0337330:five_prime_UTR 45.0%
!! ATTATAATTGTTTATAATAA+TGG - chr2_4:57285905-57285924 Msa0337330:CDS 5.0%
!!! TAAAAAGTTATATATTTTTT+TGG - chr2_4:57289883-57289902 Msa0337330:five_prime_UTR 5.0%
TAGAAGTGAAACCGACGGTG+TGG + chr2_4:57284732-57284751 None:intergenic 50.0%
GGGACACAGTTTGTGTTGGA+TGG - chr2_4:57285364-57285383 Msa0337330:CDS 50.0%
!! ACAGCGTGCCACTGTGATTT+TGG - chr2_4:57286098-57286117 Msa0337330:intron 50.0%
CTACCACTTCCCAGAAACGA+TGG + chr2_4:57286229-57286248 None:intergenic 50.0%
TGGCAAGCGATCTCTCTCTA+TGG - chr2_4:57286264-57286283 Msa0337330:intron 50.0%
!! GGGGTACCGATTTCAATTCC+TGG - chr2_4:57286627-57286646 Msa0337330:intron 50.0%
GTCAAATGGGCATGGCAAGA+AGG - chr2_4:57286916-57286935 Msa0337330:intron 50.0%
CAAATGGGCATGGCAAGAAG+GGG - chr2_4:57286918-57286937 Msa0337330:intron 50.0%
AAGAATGCCACTCCGACCAT+TGG + chr2_4:57287094-57287113 None:intergenic 50.0%
GGCCTCTTCCCAACAACATT+CGG + chr2_4:57287504-57287523 None:intergenic 50.0%
GGAGAGCTTACCCTCCTTTA+TGG + chr2_4:57287527-57287546 None:intergenic 50.0%
GCGTGTGGGAAAAGGAAGAA+AGG + chr2_4:57287766-57287785 None:intergenic 50.0%
CTCTATGTTTGCAGCCCTTG+AGG - chr2_4:57288041-57288060 Msa0337330:intron 50.0%
!!! ATGACCCCACCATTTTTGGC+TGG - chr2_4:57288152-57288171 Msa0337330:intron 50.0%
!!! TGACCCCACCATTTTTGGCT+GGG - chr2_4:57288153-57288172 Msa0337330:intron 50.0%
GAACGATCAGTCATGCAACG+AGG + chr2_4:57288193-57288212 None:intergenic 50.0%
CGTTGCATGACTGATCGTTC+CGG - chr2_4:57288193-57288212 Msa0337330:intron 50.0%
!! ACTTACTTGGAGAGTGTCGC+CGG + chr2_4:57288215-57288234 None:intergenic 50.0%
TCGCAGGTGAAGGACTTACT+TGG + chr2_4:57288228-57288247 None:intergenic 50.0%
ACATTTGAAGGGTGGATCGC+AGG + chr2_4:57288244-57288263 None:intergenic 50.0%
TTTCCTGCAGGAGTGGATAG+AGG - chr2_4:57288558-57288577 Msa0337330:intron 50.0%
TTTCCTCTATCCACTCCTGC+AGG + chr2_4:57288564-57288583 None:intergenic 50.0%
CAAGAACCATATGCTGACCG+TGG - chr2_4:57288609-57288628 Msa0337330:intron 50.0%
AGAACCATATGCTGACCGTG+GGG - chr2_4:57288611-57288630 Msa0337330:intron 50.0%
GGGTTGACGGTCAAATCCTT+TGG + chr2_4:57288664-57288683 None:intergenic 50.0%
! GTGTTGATCGACTTTCCGCT+GGG + chr2_4:57289384-57289403 None:intergenic 50.0%
! TGTGTTGATCGACTTTCCGC+TGG + chr2_4:57289385-57289404 None:intergenic 50.0%
ATGCAGATTGGGCAAAGCGA+AGG - chr2_4:57289426-57289445 Msa0337330:five_prime_UTR 50.0%
TGCAGATTGGGCAAAGCGAA+GGG - chr2_4:57289427-57289446 Msa0337330:five_prime_UTR 50.0%
TGGTATCTTGGTGGGAAGGC+AGG - chr2_4:57285925-57285944 Msa0337330:CDS 55.0%
GGTATCTTGGTGGGAAGGCA+GGG - chr2_4:57285926-57285945 Msa0337330:CDS 55.0%
GCGCTAGACCTCGGTCATAA+AGG + chr2_4:57286566-57286585 None:intergenic 55.0%
CAACCACTTGCGCTAGACCT+CGG + chr2_4:57286575-57286594 None:intergenic 55.0%
CGTGGGGTAAAGAGAAAGGG+AGG + chr2_4:57287067-57287086 None:intergenic 55.0%
GGGCGTGGGGTAAAGAGAAA+GGG + chr2_4:57287070-57287089 None:intergenic 55.0%
AGGGCGTGGGGTAAAGAGAA+AGG + chr2_4:57287071-57287090 None:intergenic 55.0%
ATGCCACTCCGACCATTGGA+GGG + chr2_4:57287090-57287109 None:intergenic 55.0%
AATGCCACTCCGACCATTGG+AGG + chr2_4:57287091-57287110 None:intergenic 55.0%
GTTGGGAAGAGGCCCCATAA+AGG - chr2_4:57287510-57287529 Msa0337330:intron 55.0%
GGAAGAGGCCCCATAAAGGA+GGG - chr2_4:57287514-57287533 Msa0337330:intron 55.0%
ACAGCAAGATTGCACCGCTG+CGG + chr2_4:57287714-57287733 None:intergenic 55.0%
CATTCCCCACGGTCAGCATA+TGG + chr2_4:57288618-57288637 None:intergenic 55.0%
ATGCTGACCGTGGGGAATGA+AGG - chr2_4:57288619-57288638 Msa0337330:intron 55.0%
TGTGTTATGGGTATGGGCGC+AGG - chr2_4:57288890-57288909 Msa0337330:intron 55.0%
CCGTATTCGGAGAACAGGAC+CGG + chr2_4:57289190-57289209 None:intergenic 55.0%
CCGGTCCTGTTCTCCGAATA+CGG - chr2_4:57289187-57289206 Msa0337330:CDS 55.0%
CTGGAGCAGGCGCTTTAGTT+TGG - chr2_4:57289308-57289327 Msa0337330:CDS 55.0%
GATTGGGCAAAGCGAAGGGA+TGG - chr2_4:57289431-57289450 Msa0337330:five_prime_UTR 55.0%
TGACCGAGGTCTAGCGCAAG+TGG - chr2_4:57286569-57286588 Msa0337330:intron 60.0%
CGAGGTCTAGCGCAAGTGGT+TGG - chr2_4:57286573-57286592 Msa0337330:intron 60.0%
! AGTGGTTGGTGCGCAGTGTG+TGG - chr2_4:57286587-57286606 Msa0337330:intron 60.0%
TGGGCATGGCAAGAAGGGGT+AGG - chr2_4:57286922-57286941 Msa0337330:intron 60.0%
CTTTACCCCACGCCCTCCAA+TGG - chr2_4:57287075-57287094 Msa0337330:intron 60.0%
GGGAAGAGGCCCCATAAAGG+AGG - chr2_4:57287513-57287532 Msa0337330:intron 60.0%
AGGAGGGTAAGCTCTCCCGA+TGG - chr2_4:57287530-57287549 Msa0337330:intron 60.0%
GGGCTGAATCATCACCGCAG+CGG - chr2_4:57287697-57287716 Msa0337330:CDS 60.0%
GAAGGGTGGATCGCAGGTGA+AGG + chr2_4:57288238-57288257 None:intergenic 60.0%
ACCCCACGCCCTCCAATGGT+CGG - chr2_4:57287079-57287098 Msa0337330:intron 65.0%
! TCCGACCATTGGAGGGCGTG+GGG + chr2_4:57287083-57287102 None:intergenic 65.0%
! CTCCGACCATTGGAGGGCGT+GGG + chr2_4:57287084-57287103 None:intergenic 65.0%
ACTCCGACCATTGGAGGGCG+TGG + chr2_4:57287085-57287104 None:intergenic 65.0%
ACGCCCTCCAATGGTCGGAG+TGG - chr2_4:57287084-57287103 Msa0337330:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 57284678 57289912 57284678 ID=Msa0337330;Name=Msa0337330
chr2_4 mRNA 57284678 57289912 57284678 ID=Msa0337330-mRNA-1;Parent=Msa0337330;Name=Msa0337330-mRNA-1;_AED=0.12;_eAED=0.12;_QI=554|1|1|1|1|1|5|420|430
chr2_4 exon 57284678 57285500 57284678 ID=Msa0337330-mRNA-1:exon:17459;Parent=Msa0337330-mRNA-1
chr2_4 exon 57285811 57286022 57285811 ID=Msa0337330-mRNA-1:exon:17458;Parent=Msa0337330-mRNA-1
chr2_4 exon 57286362 57286484 57286362 ID=Msa0337330-mRNA-1:exon:17457;Parent=Msa0337330-mRNA-1
chr2_4 exon 57287576 57287773 57287576 ID=Msa0337330-mRNA-1:exon:17456;Parent=Msa0337330-mRNA-1
chr2_4 exon 57289002 57289912 57289002 ID=Msa0337330-mRNA-1:exon:17455;Parent=Msa0337330-mRNA-1
chr2_4 five_prime_UTR 57289359 57289912 57289359 ID=Msa0337330-mRNA-1:five_prime_utr;Parent=Msa0337330-mRNA-1
chr2_4 CDS 57289002 57289358 57289002 ID=Msa0337330-mRNA-1:cds;Parent=Msa0337330-mRNA-1
chr2_4 CDS 57287576 57287773 57287576 ID=Msa0337330-mRNA-1:cds;Parent=Msa0337330-mRNA-1
chr2_4 CDS 57286362 57286484 57286362 ID=Msa0337330-mRNA-1:cds;Parent=Msa0337330-mRNA-1
chr2_4 CDS 57285811 57286022 57285811 ID=Msa0337330-mRNA-1:cds;Parent=Msa0337330-mRNA-1
chr2_4 CDS 57285098 57285500 57285098 ID=Msa0337330-mRNA-1:cds;Parent=Msa0337330-mRNA-1
chr2_4 three_prime_UTR 57284678 57285097 57284678 ID=Msa0337330-mRNA-1:three_prime_utr;Parent=Msa0337330-mRNA-1
Gene Sequence

>Msa0337330

ATGTTTGCAGGAAATGGTTTGTTTTATCCCATTTTGGGTTTTGCTTCTTTTGTGGTTTTTATTTACATGTCTTTTGGAGGGTTAAGGTTTAGTTTTGAAGAAGGGAGAGAAATGGGTTTTGTGATGAGAAATGGGACACAGTTTGTGTTGGATGGGAATGTGTTTTATGTGAATGGGTGGAATTCTTATTGGTTGATGGATCATTCTGTCGATTTTTCGTCGCGATTTAAGGTTCGTCAAATGCTGAAAACTGGGGCTAATATGGGACTCACTGTTTGTAGAACTTGGGCTTTCAATGATGGTCATTATAATGCTCTTCAAATTTCACCTGGTCACTTTGATGAACAAGTTTTTCAGGCTTTGGATTACGTCATAGCAGAAGCAAGGCAAAATGGAATAAGGCTGCTCCTTTGCTTAGTAAATAACTTGCAACCATATGGTGGGAAGAGTCAGTATGTCAAATGGGCATGGCAAGAAGGGGTAGGATTAAGCGCCTCCAATGATTCGTTCTTCTATGATCCATCAATCCGTAGTTATTTCAAGAATTACATCAAGACTGTCTTGACAAGGAAAAATTCTTTCACCGGAATTGAATATAGAAATGACCCCACCATTTTTGGCTGGGAATTGATTAATGAGCCTCGTTGCATGACTGATCGTTCCGGCGACACTCTCCAAGAGTGGATAGAGGAAATGTCGGCTTTTGTGAAATTGATTGACAAGAACCATATGCTGACCGTGGGGAATGAAGGCTTTTATGGTCCTAATGACCCAAAGGATTTGACCGTCAACCCCAATTATTGGGCATCCAGACTTGGGTCTGATTATATCCGGAACTCCAAAATCTCTGATATTGATTTCACCTCAGTTCATATCTACCCGGATCAATGGTTTCACGAGGATGAGAAAGCAATTGAAACTCAACTGAAATTTGTCAACAAGTGGATGCTTTCCCACATTGAAGATGGCGATGAAGTACTGAAGAAGCCGGTCCTGTTCTCCGAATACGGATTATCAAAAAAGAACCAGAATTTCACTGTATCCGACCGAGAAAAGATGTATGAAACAATTTTAAACATCGTTTACAAATCTGCTAAGAGAAACAAGTCTGGAGCAGGCGCTTTAGTTTGGCAATTCTTAGTTGGGGGAATGGAGGAATATTCTGATGATTATGGAATCGTCCCAGCGGAAAGTCGATCAACACAATCGCTATTTATAAAACAATCATGCAGATTGGGCAAAGCGAAGGGATGGATTAATCAACAGGATGTAAATTTCAAAGCACTTTGTTAG
Protein sequence

>Msa0337330

MFAGNGLFYPILGFASFVVFIYMSFGGLRFSFEEGREMGFVMRNGTQFVLDGNVFYVNGWNSYWLMDHSVDFSSRFKVRQMLKTGANMGLTVCRTWAFNDGHYNALQISPGHFDEQVFQALDYVIAEARQNGIRLLLCLVNNLQPYGGKSQYVKWAWQEGVGLSASNDSFFYDPSIRSYFKNYIKTVLTRKNSFTGIEYRNDPTIFGWELINEPRCMTDRSGDTLQEWIEEMSAFVKLIDKNHMLTVGNEGFYGPNDPKDLTVNPNYWASRLGSDYIRNSKISDIDFTSVHIYPDQWFHEDEKAIETQLKFVNKWMLSHIEDGDEVLKKPVLFSEYGLSKKNQNFTVSDREKMYETILNIVYKSAKRNKSGAGALVWQFLVGGMEEYSDDYGIVPAESRSTQSLFIKQSCRLGKAKGWINQQDVNFKALC*