Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262220 | XP_013465131.1 | 95.238 | 504 | 9 | 1 | 1 | 489 | 1 | 504 | 0.0 | 974 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262220 | sp|Q9FKW0|RNG1A_ARATH | 47.630 | 422 | 183 | 12 | 96 | 488 | 107 | 519 | 5.54e-110 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262220 | A0A072VC32 | 95.238 | 504 | 9 | 1 | 1 | 489 | 1 | 504 | 0.0 | 974 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0262220 | Msa0528060 | 0.871956 | 4.601718e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262220 | MtrunA17_Chr2g0324751 | 95.238 | 504 | 9 | 1 | 1 | 489 | 1 | 504 | 0.0 | 974 |
| Msa0262220 | MtrunA17_Chr4g0046901 | 42.919 | 459 | 185 | 10 | 54 | 489 | 27 | 431 | 2.21e-104 | 318 |
| Msa0262220 | MtrunA17_Chr4g0028811 | 76.364 | 55 | 13 | 0 | 139 | 193 | 1 | 55 | 1.05e-25 | 100 |
| Msa0262220 | MtrunA17_Chr6g0481531 | 56.061 | 66 | 29 | 0 | 154 | 219 | 1 | 66 | 2.28e-19 | 84.3 |
| Msa0262220 | MtrunA17_Chr4g0048301 | 48.438 | 64 | 26 | 1 | 138 | 194 | 14 | 77 | 1.05e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262220 | AT5G44280.1 | 47.630 | 422 | 183 | 12 | 96 | 488 | 107 | 519 | 5.63e-111 | 338 |
| Msa0262220 | AT5G44280.3 | 48.889 | 405 | 167 | 13 | 114 | 488 | 3 | 397 | 1.36e-109 | 331 |
| Msa0262220 | AT1G03770.3 | 43.226 | 465 | 227 | 9 | 45 | 488 | 11 | 459 | 4.54e-99 | 306 |
| Msa0262220 | AT1G03770.1 | 43.413 | 463 | 227 | 9 | 45 | 488 | 11 | 457 | 1.41e-98 | 305 |
| Msa0262220 | AT1G03770.2 | 42.675 | 471 | 227 | 10 | 45 | 488 | 11 | 465 | 1.55e-96 | 300 |
| Msa0262220 | AT1G03770.6 | 46.597 | 382 | 185 | 7 | 112 | 488 | 1 | 368 | 2.11e-93 | 288 |
| Msa0262220 | AT1G03770.4 | 46.597 | 382 | 185 | 7 | 112 | 488 | 1 | 368 | 2.11e-93 | 288 |
| Msa0262220 | AT5G44280.2 | 42.056 | 428 | 201 | 15 | 96 | 488 | 107 | 522 | 2.28e-83 | 267 |
| Msa0262220 | AT1G03770.5 | 44.507 | 355 | 178 | 7 | 139 | 488 | 1 | 341 | 1.42e-77 | 246 |
Find 110 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCATACTTCTCAATATT+TGG | 0.065158 | 2_2:-61057643 | None:intergenic |
| GATAACTTATTCACTTTAAT+TGG | 0.166274 | 2_2:-61059806 | None:intergenic |
| TTTAAAATTTAGTATACTTT+AGG | 0.241904 | 2_2:-61059828 | None:intergenic |
| GGCATTATATTTATTGGTTT+GGG | 0.243293 | 2_2:+61059680 | Msa0262220:three_prime_UTR |
| AAACCTTCATAATGATATTA+TGG | 0.245162 | 2_2:+61059850 | Msa0262220:three_prime_UTR |
| GTGTGAGGCATTATATTTAT+TGG | 0.271156 | 2_2:+61059674 | Msa0262220:exon |
| ATATATACCTCTTAAAATAT+TGG | 0.286157 | 2_2:+61059905 | Msa0262220:three_prime_UTR |
| AGGCATTATATTTATTGGTT+TGG | 0.297228 | 2_2:+61059679 | Msa0262220:exon |
| TCTGAAGAAAACGAGGAAAA+TGG | 0.308264 | 2_2:+61058239 | Msa0262220:CDS |
| GCACAATGTGTGCGGCAAGC+AGG | 0.325018 | 2_2:-61057562 | None:intergenic |
| TCATCTCATGTTCGTTTCTC+TGG | 0.325095 | 2_2:+61058737 | Msa0262220:CDS |
| TAAGAAAACAAGAACTGTTA+TGG | 0.327255 | 2_2:+61057324 | Msa0262220:CDS |
| GAGAAAATCGAGGAGCTTCT+AGG | 0.334537 | 2_2:+61058417 | Msa0262220:CDS |
| TTGGATATAGAGTAGCAATA+AGG | 0.342425 | 2_2:-61057624 | None:intergenic |
| AAACATTGACCTGCTTATTT+CGG | 0.344036 | 2_2:-61057803 | None:intergenic |
| ACTCGGGTAAGGAACGCTTC+TGG | 0.345928 | 2_2:-61054083 | None:intergenic |
| CTCGGGTAAGGAACGCTTCT+GGG | 0.349317 | 2_2:-61054082 | None:intergenic |
| TATTTATTGGTTTGGGTGGC+AGG | 0.358079 | 2_2:+61059687 | Msa0262220:three_prime_UTR |
| CAAAAGCTAGAAAGCTTACT+TGG | 0.360216 | 2_2:+61058447 | Msa0262220:CDS |
| GTTGAGATACTGGCAGTTAA+AGG | 0.360477 | 2_2:+61059199 | Msa0262220:CDS |
| TTCAGAGTCAGAGGATTCAT+TGG | 0.362297 | 2_2:-61054528 | None:intergenic |
| GCAATAAGGGCATCGTAGTT+TGG | 0.366494 | 2_2:-61057610 | None:intergenic |
| TTTCGGAGTAACACAAGATA+TGG | 0.404440 | 2_2:+61058482 | Msa0262220:CDS |
| TTCTTCATCTTCCATTGACT+CGG | 0.410068 | 2_2:-61054100 | None:intergenic |
| CATCTTCCTCTTGTTCGAGT+TGG | 0.425056 | 2_2:-61054188 | None:intergenic |
| TGGATATAGAGTAGCAATAA+GGG | 0.426431 | 2_2:-61057623 | None:intergenic |
| TGGAAGCATAGAAAGTGATA+TGG | 0.432789 | 2_2:+61058385 | Msa0262220:CDS |
| AATGAAAGAGACTCATCTTC+CGG | 0.441228 | 2_2:+61058266 | Msa0262220:CDS |
| CTTTCTATGCTTCCACCATC+AGG | 0.449616 | 2_2:-61058377 | None:intergenic |
| AGTTGAAGAAGTTGAGATAC+TGG | 0.455290 | 2_2:+61059189 | Msa0262220:CDS |
| ATCCTTGAATATCACTAGCT+TGG | 0.455511 | 2_2:-61058217 | None:intergenic |
| ACGAGGATCTCACTTCATAA+AGG | 0.459351 | 2_2:-61058827 | None:intergenic |
| CTCTCAGCCCTCATCGTCAA+TGG | 0.465700 | 2_2:+61058349 | Msa0262220:CDS |
| TATTGAGAAGTATGAGGAAG+AGG | 0.469487 | 2_2:+61057648 | Msa0262220:CDS |
| ATCTTCCATTGACTCGGGTA+AGG | 0.473644 | 2_2:-61054094 | None:intergenic |
| CTACCATAATATCATTATGA+AGG | 0.479150 | 2_2:-61059853 | None:intergenic |
| ACAAGATATGGCAGTGGTGG+TGG | 0.479840 | 2_2:+61058494 | Msa0262220:CDS |
| GCGTTCCTTACCCGAGTCAA+TGG | 0.485427 | 2_2:+61054089 | Msa0262220:CDS |
| AGAAAGCTTACTTGGGGAAG+GGG | 0.485877 | 2_2:+61058455 | Msa0262220:CDS |
| GGTAAGGAACGCTTCTGGGC+TGG | 0.487294 | 2_2:-61054078 | None:intergenic |
| TCCAAATATTGAGAAGTATG+AGG | 0.490054 | 2_2:+61057642 | Msa0262220:CDS |
| CAAAGAAACTACACCAAGGC+TGG | 0.492616 | 2_2:+61058761 | Msa0262220:CDS |
| CATTGACAAATCAATGCGAC+TGG | 0.495504 | 2_2:+61057375 | Msa0262220:CDS |
| AGGTTCTTGACAGACACATT+TGG | 0.497021 | 2_2:-61058807 | None:intergenic |
| CACAATGTGTGCGGCAAGCA+GGG | 0.500661 | 2_2:-61057561 | None:intergenic |
| GACTCATCTTCCGGTGATGA+GGG | 0.508584 | 2_2:+61058275 | Msa0262220:CDS |
| CCTAGACATTCGACCACTAC+GGG | 0.509009 | 2_2:-61058534 | None:intergenic |
| AACCAAGCTAGTGATATTCA+AGG | 0.512189 | 2_2:+61058215 | Msa0262220:CDS |
| GTCCAATGTCCAATTTGCCT+TGG | 0.513498 | 2_2:+61056456 | Msa0262220:CDS |
| GCAGCACCATGACGATGAAA+AGG | 0.517328 | 2_2:+61054332 | Msa0262220:CDS |
| AGATGAAGCTTCTCCAGCCT+TGG | 0.519875 | 2_2:-61058774 | None:intergenic |
| AGCTGATGAGGATTCAGTCC+TGG | 0.521897 | 2_2:+61059249 | Msa0262220:CDS |
| TTTCGATGAGCTATCATCGT+TGG | 0.522619 | 2_2:+61059273 | Msa0262220:CDS |
| AGACGAGCAAGGAGAAGAAG+AGG | 0.522708 | 2_2:+61054254 | Msa0262220:CDS |
| AAAAGCTAGAAAGCTTACTT+GGG | 0.524304 | 2_2:+61058448 | Msa0262220:CDS |
| GACGAAGATGACGATGAAGA+AGG | 0.526802 | 2_2:+61054309 | Msa0262220:CDS |
| GGCAGTGGTGGTGGTAGCAA+CGG | 0.528099 | 2_2:+61058503 | Msa0262220:CDS |
| GTCACAAATGAACTTGAACT+TGG | 0.528949 | 2_2:-61058149 | None:intergenic |
| GGGCTGAGAGGAGCGAACTC+TGG | 0.529329 | 2_2:-61058336 | None:intergenic |
| ATGATAGCTCATCGAAATCC+AGG | 0.532453 | 2_2:-61059267 | None:intergenic |
| TGGGTGGCAGGCGTTTGAGA+TGG | 0.533887 | 2_2:+61059699 | Msa0262220:three_prime_UTR |
| GGAGAAGAACCGAAATAAGC+AGG | 0.536321 | 2_2:+61057794 | Msa0262220:CDS |
| ACCTAGACATTCGACCACTA+CGG | 0.538677 | 2_2:-61058535 | None:intergenic |
| TCTTCATCTTCCATTGACTC+GGG | 0.539473 | 2_2:-61054099 | None:intergenic |
| CTCATCTTCCGGTGATGAGG+GGG | 0.542483 | 2_2:+61058277 | Msa0262220:CDS |
| CCCGTAGTGGTCGAATGTCT+AGG | 0.544547 | 2_2:+61058534 | Msa0262220:CDS |
| CTAGAAAGCTTACTTGGGGA+AGG | 0.545363 | 2_2:+61058453 | Msa0262220:CDS |
| AGACTCATCTTCCGGTGATG+AGG | 0.546223 | 2_2:+61058274 | Msa0262220:CDS |
| AAGCTTACTTGGGGAAGGGG+TGG | 0.546390 | 2_2:+61058458 | Msa0262220:CDS |
| ATTATATTTATTGGTTTGGG+TGG | 0.547028 | 2_2:+61059683 | Msa0262220:three_prime_UTR |
| TCAACTTCTTCAACTGTCAA+AGG | 0.556424 | 2_2:-61059181 | None:intergenic |
| ATCAAAGAAACCTTCAGTCT+AGG | 0.562587 | 2_2:+61058186 | Msa0262220:CDS |
| GGAGCTTGAATTTCGTGAAG+AGG | 0.563934 | 2_2:+61057773 | Msa0262220:intron |
| GATTCAAGCTTCAATAGCAA+AGG | 0.564070 | 2_2:+61058079 | Msa0262220:intron |
| TAGAAAGCTTACTTGGGGAA+GGG | 0.564314 | 2_2:+61058454 | Msa0262220:CDS |
| AAATCGAGGAGCTTCTAGGC+TGG | 0.565613 | 2_2:+61058421 | Msa0262220:CDS |
| ACGAAGATGACGATGAAGAA+GGG | 0.568533 | 2_2:+61054310 | Msa0262220:CDS |
| CAATGCATTCCCTGCAAAAG+CGG | 0.577701 | 2_2:-61057357 | None:intergenic |
| TCGTCAATGGCAAGTCCTGA+TGG | 0.582981 | 2_2:+61058362 | Msa0262220:CDS |
| TTGTGACAAGACAGCTGATG+AGG | 0.583484 | 2_2:+61059237 | Msa0262220:CDS |
| GGACTTGCCATTGACGATGA+GGG | 0.585871 | 2_2:-61058356 | None:intergenic |
| CATCGACCAACTCGAACAAG+AGG | 0.594268 | 2_2:+61054182 | Msa0262220:CDS |
| GATGAGGAAGAAGACGAGCA+AGG | 0.608097 | 2_2:+61054243 | Msa0262220:CDS |
| GACGGCTAGCACAATGTGTG+CGG | 0.610661 | 2_2:-61057570 | None:intergenic |
| TACCAAGGCAAATTGGACAT+TGG | 0.611122 | 2_2:-61056458 | None:intergenic |
| TTCAGATTCTGGCATACAAG+AGG | 0.611493 | 2_2:+61059648 | Msa0262220:intron |
| AACACAAGATATGGCAGTGG+TGG | 0.615387 | 2_2:+61058491 | Msa0262220:CDS |
| GATCATCTCTCAAGGAGCGA+CGG | 0.617352 | 2_2:-61057588 | None:intergenic |
| TAGTGGTCGAATGTCTAGGT+TGG | 0.617463 | 2_2:+61058538 | Msa0262220:CDS |
| AGGACTTGCCATTGACGATG+AGG | 0.621059 | 2_2:-61058357 | None:intergenic |
| ATTGACAAATCAATGCGACT+GGG | 0.624131 | 2_2:+61057376 | Msa0262220:CDS |
| GGTCGATGAAGTGTGGTTCG+CGG | 0.626767 | 2_2:-61054167 | None:intergenic |
| GTAGTTTGGATCATCTCTCA+AGG | 0.629290 | 2_2:-61057596 | None:intergenic |
| GATTCTGGCATACAAGAGGA+AGG | 0.641703 | 2_2:+61059652 | Msa0262220:intron |
| ACTCATCTTCCGGTGATGAG+GGG | 0.642493 | 2_2:+61058276 | Msa0262220:CDS |
| CATTGACGATGAGGGCTGAG+AGG | 0.642573 | 2_2:-61058348 | None:intergenic |
| TCGAGTTGGTCGATGAAGTG+TGG | 0.648127 | 2_2:-61054174 | None:intergenic |
| TGATCAACAAGAGCAAGATG+AGG | 0.648875 | 2_2:+61054227 | Msa0262220:CDS |
| AGTAACACAAGATATGGCAG+TGG | 0.654930 | 2_2:+61058488 | Msa0262220:CDS |
| TCAATGGCAAGTCCTGATGG+TGG | 0.664275 | 2_2:+61058365 | Msa0262220:CDS |
| CTTGAATGAGAACACTGATG+AGG | 0.666277 | 2_2:+61058577 | Msa0262220:CDS |
| AACGGCAAGAGTTCCCGTAG+TGG | 0.671350 | 2_2:+61058521 | Msa0262220:CDS |
| GTTCGCGGTGATGCTTGACA+TGG | 0.673542 | 2_2:-61054152 | None:intergenic |
| GCATACAAGAGGAAGGTGTG+AGG | 0.682202 | 2_2:+61059659 | Msa0262220:CDS |
| GATATAAATAGAGAAAATCG+AGG | 0.683062 | 2_2:+61058407 | Msa0262220:CDS |
| TCAAGGATCTGAAGAAAACG+AGG | 0.686356 | 2_2:+61058232 | Msa0262220:CDS |
| AAAGCTAGAAAGCTTACTTG+GGG | 0.686965 | 2_2:+61058449 | Msa0262220:CDS |
| TCATCTTCCGGTGATGAGGG+GGG | 0.693570 | 2_2:+61058278 | Msa0262220:CDS |
| TTGACAAATCAATGCGACTG+GGG | 0.721274 | 2_2:+61057377 | Msa0262220:CDS |
| TGGACAAAGAAACTACACCA+AGG | 0.745241 | 2_2:+61058757 | Msa0262220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATCATAAATAATAAATC+CGG | - | chr2_2:61057516-61057535 | None:intergenic | 10.0% |
| !!! | TTTAAAATTTAGTATACTTT+AGG | - | chr2_2:61059831-61059850 | None:intergenic | 10.0% |
| !!! | AACTGATTTTTTTTAACATT+CGG | + | chr2_2:61055727-61055746 | Msa0262220:intron | 15.0% |
| !! | TTGAAAGAACAATTTAATAT+GGG | - | chr2_2:61056354-61056373 | None:intergenic | 15.0% |
| !! | ATTGAAAGAACAATTTAATA+TGG | - | chr2_2:61056355-61056374 | None:intergenic | 15.0% |
| !! | AAATGTTACTAATATTTAGT+TGG | + | chr2_2:61056590-61056609 | Msa0262220:intron | 15.0% |
| !! | ATTAGATACAATAGAAAATA+TGG | - | chr2_2:61056652-61056671 | None:intergenic | 15.0% |
| !!! | TAATAAAATTTGAAATTGCA+TGG | - | chr2_2:61057197-61057216 | None:intergenic | 15.0% |
| !! | TTATAAGATATGTATTTAGT+TGG | - | chr2_2:61057959-61057978 | None:intergenic | 15.0% |
| !!! | ATTATACAATTGTTTTCAAT+GGG | - | chr2_2:61059072-61059091 | None:intergenic | 15.0% |
| !!! | TATTATACAATTGTTTTCAA+TGG | - | chr2_2:61059073-61059092 | None:intergenic | 15.0% |
| !!! | TTTTCTCAAATTTATTATCA+TGG | - | chr2_2:61059462-61059481 | None:intergenic | 15.0% |
| !! | ATATATACCTCTTAAAATAT+TGG | + | chr2_2:61059905-61059924 | Msa0262220:three_prime_UTR | 15.0% |
| !!! | ATCGTTTTCAATTATAAACA+TGG | - | chr2_2:61054814-61054833 | None:intergenic | 20.0% |
| !!! | TTCAAAACGTATTTTTTGTA+AGG | + | chr2_2:61055110-61055129 | Msa0262220:intron | 20.0% |
| !! | TTATTATGAAATACAGTTTC+AGG | - | chr2_2:61055206-61055225 | None:intergenic | 20.0% |
| !! | CTATGATGAAAAACAAAAAA+GGG | - | chr2_2:61055798-61055817 | None:intergenic | 20.0% |
| !! | ACTATGATGAAAAACAAAAA+AGG | - | chr2_2:61055799-61055818 | None:intergenic | 20.0% |
| !! | CTAAAATATTGAAATCATGA+TGG | + | chr2_2:61055971-61055990 | Msa0262220:intron | 20.0% |
| !!! | TAAAACTTCTTTTTTACCAA+AGG | - | chr2_2:61056107-61056126 | None:intergenic | 20.0% |
| !!! | GGTAAAAAAGAAGTTTTAAA+TGG | + | chr2_2:61056109-61056128 | Msa0262220:intron | 20.0% |
| !! | TTATGAATACTATTCTTGAA+AGG | + | chr2_2:61056257-61056276 | Msa0262220:intron | 20.0% |
| !! | AATGATTATGAACATGTTAA+CGG | + | chr2_2:61056284-61056303 | Msa0262220:intron | 20.0% |
| !!! | TACAAGTTGAAATGAAAATT+TGG | + | chr2_2:61056307-61056326 | Msa0262220:intron | 20.0% |
| !! | TGTCAATTATATTTATGACA+AGG | + | chr2_2:61056761-61056780 | Msa0262220:intron | 20.0% |
| !!! | ATTTTCGTAGTATACTTAAT+TGG | + | chr2_2:61056790-61056809 | Msa0262220:intron | 20.0% |
| !!! | ATTGTGAATACTGATTTAAA+AGG | + | chr2_2:61057018-61057037 | Msa0262220:intron | 20.0% |
| !! | TATGATATATATATCATCTC+AGG | + | chr2_2:61057527-61057546 | Msa0262220:intron | 20.0% |
| !! | GATAAGATTCAAGATTAATA+AGG | - | chr2_2:61058007-61058026 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTCTTTCTTTTC+TGG | + | chr2_2:61058054-61058073 | Msa0262220:intron | 20.0% |
| !!! | TTTCTTTTATCACTTATTTC+TGG | + | chr2_2:61058850-61058869 | Msa0262220:intron | 20.0% |
| !!! | TTATACAATTGTTTTCAATG+GGG | - | chr2_2:61059071-61059090 | None:intergenic | 20.0% |
| !!! | ATCCAAAAGCATATTTAAAA+GGG | + | chr2_2:61059360-61059379 | Msa0262220:intron | 20.0% |
| !! | AAAAAAAGACTTTAAGCAAT+TGG | - | chr2_2:61059769-61059788 | None:intergenic | 20.0% |
| !! | GATAACTTATTCACTTTAAT+TGG | - | chr2_2:61059809-61059828 | None:intergenic | 20.0% |
| !! | AAACCTTCATAATGATATTA+TGG | + | chr2_2:61059850-61059869 | Msa0262220:three_prime_UTR | 20.0% |
| !!! | ACAAAAACCAATATTTTAAG+AGG | - | chr2_2:61059915-61059934 | None:intergenic | 20.0% |
| !!! | TTTGTTCATGTTCTAAAGTT+TGG | + | chr2_2:61054485-61054504 | Msa0262220:intron | 25.0% |
| ! | CTAATCTTCAAATCAAACTT+AGG | + | chr2_2:61055012-61055031 | Msa0262220:intron | 25.0% |
| ! | TTAAAGCTTCAACAAAATCA+TGG | - | chr2_2:61055287-61055306 | None:intergenic | 25.0% |
| ! | AAACAATTTAACTGCATGTT+TGG | - | chr2_2:61055364-61055383 | None:intergenic | 25.0% |
| !!! | TAAAGGATGTTGTTTTATAG+TGG | - | chr2_2:61055490-61055509 | None:intergenic | 25.0% |
| ! | TTCCTGATGATATTGTTAAA+GGG | - | chr2_2:61055763-61055782 | None:intergenic | 25.0% |
| !!! | ACTTTTCCATTTTATTTGCA+TGG | + | chr2_2:61056157-61056176 | Msa0262220:intron | 25.0% |
| ! | ATAGAAAATATGGAACTAAG+AGG | - | chr2_2:61056642-61056661 | None:intergenic | 25.0% |
| !! | ATCTAAGATCATTTGTTACT+TGG | + | chr2_2:61056975-61056994 | Msa0262220:intron | 25.0% |
| ! | TAAGAAAACAAGAACTGTTA+TGG | + | chr2_2:61057324-61057343 | Msa0262220:CDS | 25.0% |
| ! | GGCATATTAAATAAATAAGG+TGG | - | chr2_2:61057421-61057440 | None:intergenic | 25.0% |
| ! | AGCGGCATATTAAATAAATA+AGG | - | chr2_2:61057424-61057443 | None:intergenic | 25.0% |
| ! | ACTTTGTCCTAATATATACA+CGG | + | chr2_2:61057691-61057710 | Msa0262220:intron | 25.0% |
| !! | CACTAGCTAAATTTTACAAA+AGG | - | chr2_2:61057732-61057751 | None:intergenic | 25.0% |
| !! | CAATAGCAAAGGTTTTTAAA+CGG | + | chr2_2:61058090-61058109 | Msa0262220:CDS | 25.0% |
| ! | GATATAAATAGAGAAAATCG+AGG | + | chr2_2:61058407-61058426 | Msa0262220:CDS | 25.0% |
| !! | TACGTAGTAACATTTTTCAT+TGG | - | chr2_2:61058638-61058657 | None:intergenic | 25.0% |
| ! | ATAAGTGATAAAAGAAAACG+AGG | - | chr2_2:61058847-61058866 | None:intergenic | 25.0% |
| !!! | CTTCAAAAAACAAAGCATTT+TGG | - | chr2_2:61059018-61059037 | None:intergenic | 25.0% |
| !! | GATCCAAAAGCATATTTAAA+AGG | + | chr2_2:61059359-61059378 | Msa0262220:intron | 25.0% |
| !! | TCCAAAAGCATATTTAAAAG+GGG | + | chr2_2:61059361-61059380 | Msa0262220:intron | 25.0% |
| ! | AAATCTTAATACTCACCAAA+TGG | - | chr2_2:61059387-61059406 | None:intergenic | 25.0% |
| ! | AAATGTAATCACATGTGTTA+TGG | + | chr2_2:61059492-61059511 | Msa0262220:intron | 25.0% |
| !! | AGGCATTATATTTATTGGTT+TGG | + | chr2_2:61059679-61059698 | Msa0262220:exon | 25.0% |
| !!! | GGCATTATATTTATTGGTTT+GGG | + | chr2_2:61059680-61059699 | Msa0262220:three_prime_UTR | 25.0% |
| !!! | ATTATATTTATTGGTTTGGG+TGG | + | chr2_2:61059683-61059702 | Msa0262220:three_prime_UTR | 25.0% |
| ! | CTACCATAATATCATTATGA+AGG | - | chr2_2:61059856-61059875 | None:intergenic | 25.0% |
| ! | ATTTTTCCTTTTCATCGTCA+TGG | - | chr2_2:61054341-61054360 | None:intergenic | 30.0% |
| !!! | CGTTTAGCTTTTTTATCACA+TGG | + | chr2_2:61054403-61054422 | Msa0262220:intron | 30.0% |
| !! | TGGTTTGCATGTTTAGATTT+TGG | + | chr2_2:61054787-61054806 | Msa0262220:intron | 30.0% |
| TACTTTCTTCGATCATGAAA+TGG | - | chr2_2:61054841-61054860 | None:intergenic | 30.0% | |
| AATGAAAATATACGCCAAAG+TGG | - | chr2_2:61054865-61054884 | None:intergenic | 30.0% | |
| ! | TGGCGTATATTTTCATTACT+TGG | + | chr2_2:61054868-61054887 | Msa0262220:intron | 30.0% |
| !! | ACTTGGTACATTGTTTTTCA+TGG | + | chr2_2:61054885-61054904 | Msa0262220:intron | 30.0% |
| ATCTATGATCTCTTTCATGA+GGG | + | chr2_2:61054931-61054950 | Msa0262220:intron | 30.0% | |
| ACTTTAACAATGACACATAC+TGG | - | chr2_2:61054974-61054993 | None:intergenic | 30.0% | |
| CTTCAAATCAAACTTAGGTT+TGG | + | chr2_2:61055017-61055036 | Msa0262220:intron | 30.0% | |
| TTGTGTGTTGTAAATGTCTT+TGG | + | chr2_2:61055051-61055070 | Msa0262220:intron | 30.0% | |
| AAGGATTGTCATATACCATT+TGG | + | chr2_2:61055129-61055148 | Msa0262220:intron | 30.0% | |
| ATTTGAATCATGACTCCAAA+TGG | - | chr2_2:61055147-61055166 | None:intergenic | 30.0% | |
| ATTTAACTGCATGTTTGGAT+TGG | - | chr2_2:61055359-61055378 | None:intergenic | 30.0% | |
| ATTCTTTCAATGTTTGTGCA+TGG | + | chr2_2:61055398-61055417 | Msa0262220:intron | 30.0% | |
| TCCTGATGATATTGTTAAAG+GGG | - | chr2_2:61055762-61055781 | None:intergenic | 30.0% | |
| CTTCCTGATGATATTGTTAA+AGG | - | chr2_2:61055764-61055783 | None:intergenic | 30.0% | |
| AGTTATCAATAAAGCCAGAT+AGG | + | chr2_2:61055816-61055835 | Msa0262220:intron | 30.0% | |
| ACAATGCCATGCAAATAAAA+TGG | - | chr2_2:61056166-61056185 | None:intergenic | 30.0% | |
| AAATGAAAATTTGGCATGTC+TGG | + | chr2_2:61056316-61056335 | Msa0262220:intron | 30.0% | |
| AAAAACATACCAAGGCAAAT+TGG | - | chr2_2:61056468-61056487 | None:intergenic | 30.0% | |
| !! | ATGTTTTTGTTCAACCTTTC+TGG | + | chr2_2:61056480-61056499 | Msa0262220:intron | 30.0% |
| ACCATAACCTACTTCATTAT+TGG | + | chr2_2:61056672-61056691 | Msa0262220:intron | 30.0% | |
| TCCAATAATGAAGTAGGTTA+TGG | - | chr2_2:61056676-61056695 | None:intergenic | 30.0% | |
| CGAATTTCCAATAATGAAGT+AGG | - | chr2_2:61056682-61056701 | None:intergenic | 30.0% | |
| TGGAAATTCGATCATATTGA+AGG | + | chr2_2:61056692-61056711 | Msa0262220:intron | 30.0% | |
| GTAAGATAAGCATGAATACA+TGG | - | chr2_2:61056730-61056749 | None:intergenic | 30.0% | |
| TTCAAACTGAGACTTATTCA+TGG | - | chr2_2:61056936-61056955 | None:intergenic | 30.0% | |
| TGTGAACTCGTTTCTATAAA+CGG | + | chr2_2:61057049-61057068 | Msa0262220:intron | 30.0% | |
| ! | TATTTTATTAGCACCAGATG+TGG | + | chr2_2:61057106-61057125 | Msa0262220:intron | 30.0% |
| AGACAAATGCTAAAAACAAC+AGG | - | chr2_2:61057160-61057179 | None:intergenic | 30.0% | |
| ATGTAATTTCTGTATGTGAC+CGG | + | chr2_2:61057494-61057513 | Msa0262220:intron | 30.0% | |
| TGGATATAGAGTAGCAATAA+GGG | - | chr2_2:61057626-61057645 | None:intergenic | 30.0% | |
| TTGGATATAGAGTAGCAATA+AGG | - | chr2_2:61057627-61057646 | None:intergenic | 30.0% | |
| ! | TCCAAATATTGAGAAGTATG+AGG | + | chr2_2:61057642-61057661 | Msa0262220:CDS | 30.0% |
| TCCTCATACTTCTCAATATT+TGG | - | chr2_2:61057646-61057665 | None:intergenic | 30.0% | |
| AAACATTGACCTGCTTATTT+CGG | - | chr2_2:61057806-61057825 | None:intergenic | 30.0% | |
| ACATCAATCAGTAAAACATG+TGG | - | chr2_2:61057900-61057919 | None:intergenic | 30.0% | |
| ! | TAAGTTGTTGACTATCTACA+TGG | + | chr2_2:61057920-61057939 | Msa0262220:intron | 30.0% |
| ! | TGTATTTAGTTGGTATGCTA+CGG | - | chr2_2:61057949-61057968 | None:intergenic | 30.0% |
| !!! | ATCTCTTTCGTTTTTTCTGT+CGG | - | chr2_2:61058313-61058332 | None:intergenic | 30.0% |
| AAAAGCTAGAAAGCTTACTT+GGG | + | chr2_2:61058448-61058467 | Msa0262220:CDS | 30.0% | |
| !!! | CTCCTTTTTTTCTCTTGTAA+TGG | + | chr2_2:61058611-61058630 | Msa0262220:intron | 30.0% |
| GTCCATTACAAGAGAAAAAA+AGG | - | chr2_2:61058616-61058635 | None:intergenic | 30.0% | |
| !! | CAAAAAACAAAGCATTTTGG+TGG | - | chr2_2:61059015-61059034 | None:intergenic | 30.0% |
| ! | ATTTCCAGTTCATCTTTTTG+TGG | - | chr2_2:61059307-61059326 | None:intergenic | 30.0% |
| !!! | TTTTCTGTTGTTTCAGATTC+TGG | + | chr2_2:61059637-61059656 | Msa0262220:intron | 30.0% |
| ! | GTGTGAGGCATTATATTTAT+TGG | + | chr2_2:61059674-61059693 | Msa0262220:exon | 30.0% |
| ! | TTCTTCATCTTCCATTGACT+CGG | - | chr2_2:61054103-61054122 | None:intergenic | 35.0% |
| GATGAAAAGGAAAAATCGCA+AGG | + | chr2_2:61054345-61054364 | Msa0262220:CDS | 35.0% | |
| CCAGTTGAGAAAAACCAATT+GGG | - | chr2_2:61054440-61054459 | None:intergenic | 35.0% | |
| !!! | CCAATTGGTTTTTCTCAACT+GGG | + | chr2_2:61054438-61054457 | Msa0262220:intron | 35.0% |
| ! | AACTGGGTTATGCTTAGTTT+TGG | + | chr2_2:61054454-61054473 | Msa0262220:intron | 35.0% |
| !!! | AGATTCATGTTTTGATCCTG+TGG | + | chr2_2:61054631-61054650 | Msa0262220:intron | 35.0% |
| ! | TTTTGATCCTGTGGATTTTG+AGG | + | chr2_2:61054640-61054659 | Msa0262220:intron | 35.0% |
| !!! | TGGATTTTGAGGTTGTTGTT+TGG | + | chr2_2:61054651-61054670 | Msa0262220:intron | 35.0% |
| CCAACAATGACAAATCAAAC+AGG | - | chr2_2:61054770-61054789 | None:intergenic | 35.0% | |
| !! | CCTGTTTGATTTGTCATTGT+TGG | + | chr2_2:61054767-61054786 | Msa0262220:intron | 35.0% |
| ATCGAAGAAAGTAACCACTT+TGG | + | chr2_2:61054848-61054867 | Msa0262220:intron | 35.0% | |
| CATCTATGATCTCTTTCATG+AGG | + | chr2_2:61054930-61054949 | Msa0262220:intron | 35.0% | |
| ! | GTTGTTACTTAGTGCATGTT+TGG | + | chr2_2:61055228-61055247 | Msa0262220:intron | 35.0% |
| TTAGTGCATGTTTGGATTGA+CGG | + | chr2_2:61055236-61055255 | Msa0262220:intron | 35.0% | |
| TGAGTTTGACAAAATCACCA+TGG | + | chr2_2:61055259-61055278 | Msa0262220:intron | 35.0% | |
| CAAACATTGAAAGAATGCAG+AGG | - | chr2_2:61055394-61055413 | None:intergenic | 35.0% | |
| TTTCAATGTTTGTGCATGGT+TGG | + | chr2_2:61055402-61055421 | Msa0262220:intron | 35.0% | |
| TCAATAGCACTTTAACCACA+AGG | - | chr2_2:61055436-61055455 | None:intergenic | 35.0% | |
| ! | GGTTAAAGTGCTATTGATTG+TGG | + | chr2_2:61055439-61055458 | Msa0262220:intron | 35.0% |
| ! | AAAGTGCTATTGATTGTGGA+AGG | + | chr2_2:61055443-61055462 | Msa0262220:intron | 35.0% |
| CCACTATGGCAAATTTGTAA+AGG | - | chr2_2:61055507-61055526 | None:intergenic | 35.0% | |
| CCTTTACAAATTTGCCATAG+TGG | + | chr2_2:61055504-61055523 | Msa0262220:intron | 35.0% | |
| ! | AGTTCTTTTGCAAACCACTA+TGG | - | chr2_2:61055521-61055540 | None:intergenic | 35.0% |
| ! | ATAGTGGTTTGCAAAAGAAC+TGG | + | chr2_2:61055520-61055539 | Msa0262220:intron | 35.0% |
| ! | ATGCACAAAGCTGAACATTT+TGG | - | chr2_2:61055649-61055668 | None:intergenic | 35.0% |
| AAAATCAGTTGCCAGTCTTT+GGG | - | chr2_2:61055717-61055736 | None:intergenic | 35.0% | |
| AAAAATCAGTTGCCAGTCTT+TGG | - | chr2_2:61055718-61055737 | None:intergenic | 35.0% | |
| ACCCCTTTAACAATATCATC+AGG | + | chr2_2:61055758-61055777 | Msa0262220:intron | 35.0% | |
| !! | AGTGAGTTTGCTTGAAGTTT+TGG | + | chr2_2:61056061-61056080 | Msa0262220:intron | 35.0% |
| GGTTGAACAAAAACATACCA+AGG | - | chr2_2:61056476-61056495 | None:intergenic | 35.0% | |
| ! | TTTTGTTCAACCTTTCTGGA+TGG | + | chr2_2:61056484-61056503 | Msa0262220:intron | 35.0% |
| ACTATTACAGAGCTATCACT+AGG | + | chr2_2:61056615-61056634 | Msa0262220:intron | 35.0% | |
| CGTAGTATACTTAATTGGTC+AGG | + | chr2_2:61056795-61056814 | Msa0262220:intron | 35.0% | |
| GTGAACTCGTTTCTATAAAC+GGG | + | chr2_2:61057050-61057069 | Msa0262220:intron | 35.0% | |
| TGACATTTAACAACCACATC+TGG | - | chr2_2:61057122-61057141 | None:intergenic | 35.0% | |
| ATAATTCAAGCATAAGCTGC+AGG | - | chr2_2:61057236-61057255 | None:intergenic | 35.0% | |
| TGCAGCTTATGCTTGAATTA+TGG | + | chr2_2:61057235-61057254 | Msa0262220:intron | 35.0% | |
| CTGTTCAAACACAAAATGCT+TGG | - | chr2_2:61057297-61057316 | None:intergenic | 35.0% | |
| ! | CAAGCATTTTGTGTTTGAAC+AGG | + | chr2_2:61057295-61057314 | Msa0262220:intron | 35.0% |
| ATTGACAAATCAATGCGACT+GGG | + | chr2_2:61057376-61057395 | Msa0262220:CDS | 35.0% | |
| AGATAAGCAAAGTAGAGACA+AGG | - | chr2_2:61057465-61057484 | None:intergenic | 35.0% | |
| ! | TATTGAGAAGTATGAGGAAG+AGG | + | chr2_2:61057648-61057667 | Msa0262220:CDS | 35.0% |
| AACAGGACCGTGTATATATT+AGG | - | chr2_2:61057701-61057720 | None:intergenic | 35.0% | |
| ! | TACAAAAGGTGCATGTAAAC+AGG | - | chr2_2:61057718-61057737 | None:intergenic | 35.0% |
| GATTCAAGCTTCAATAGCAA+AGG | + | chr2_2:61058079-61058098 | Msa0262220:intron | 35.0% | |
| GTCACAAATGAACTTGAACT+TGG | - | chr2_2:61058152-61058171 | None:intergenic | 35.0% | |
| ATCAAAGAAACCTTCAGTCT+AGG | + | chr2_2:61058186-61058205 | Msa0262220:CDS | 35.0% | |
| AACCAAGCTAGTGATATTCA+AGG | + | chr2_2:61058215-61058234 | Msa0262220:CDS | 35.0% | |
| ATCCTTGAATATCACTAGCT+TGG | - | chr2_2:61058220-61058239 | None:intergenic | 35.0% | |
| TCTGAAGAAAACGAGGAAAA+TGG | + | chr2_2:61058239-61058258 | Msa0262220:CDS | 35.0% | |
| AATGAAAGAGACTCATCTTC+CGG | + | chr2_2:61058266-61058285 | Msa0262220:CDS | 35.0% | |
| GACAGAAAAAACGAAAGAGA+TGG | + | chr2_2:61058312-61058331 | Msa0262220:CDS | 35.0% | |
| ! | TGGAAGCATAGAAAGTGATA+TGG | + | chr2_2:61058385-61058404 | Msa0262220:CDS | 35.0% |
| CAAAAGCTAGAAAGCTTACT+TGG | + | chr2_2:61058447-61058466 | Msa0262220:CDS | 35.0% | |
| AAAGCTAGAAAGCTTACTTG+GGG | + | chr2_2:61058449-61058468 | Msa0262220:CDS | 35.0% | |
| TTTCGGAGTAACACAAGATA+TGG | + | chr2_2:61058482-61058501 | Msa0262220:CDS | 35.0% | |
| !! | AAAACAAAGCATTTTGGTGG+AGG | - | chr2_2:61059012-61059031 | None:intergenic | 35.0% |
| TCAACTTCTTCAACTGTCAA+AGG | - | chr2_2:61059184-61059203 | None:intergenic | 35.0% | |
| AGTTGAAGAAGTTGAGATAC+TGG | + | chr2_2:61059189-61059208 | Msa0262220:CDS | 35.0% | |
| AGATCCACAAAAAGATGAAC+TGG | + | chr2_2:61059300-61059319 | Msa0262220:CDS | 35.0% | |
| ! | GCCCCTTTTAAATATGCTTT+TGG | - | chr2_2:61059365-61059384 | None:intergenic | 35.0% |
| CATATTTAAAAGGGGCCATT+TGG | + | chr2_2:61059369-61059388 | Msa0262220:intron | 35.0% | |
| CCATGTTTGTGCTTTATAGA+AGG | - | chr2_2:61059419-61059438 | None:intergenic | 35.0% | |
| CCTTCTATAAAGCACAAACA+TGG | + | chr2_2:61059416-61059435 | Msa0262220:intron | 35.0% | |
| !! | TCTTCATCTTCCATTGACTC+GGG | - | chr2_2:61054102-61054121 | None:intergenic | 40.0% |
| TGATCAACAAGAGCAAGATG+AGG | + | chr2_2:61054227-61054246 | Msa0262220:CDS | 40.0% | |
| ACGAAGATGACGATGAAGAA+GGG | + | chr2_2:61054310-61054329 | Msa0262220:CDS | 40.0% | |
| !! | TGGTTTTACAGTGACCCAAT+TGG | + | chr2_2:61054423-61054442 | Msa0262220:intron | 40.0% |
| !!! | CCCAATTGGTTTTTCTCAAC+TGG | + | chr2_2:61054437-61054456 | Msa0262220:intron | 40.0% |
| CCCAGTTGAGAAAAACCAAT+TGG | - | chr2_2:61054441-61054460 | None:intergenic | 40.0% | |
| TTCAGAGTCAGAGGATTCAT+TGG | - | chr2_2:61054531-61054550 | None:intergenic | 40.0% | |
| ! | AGGTTTTTCTTCAGAGTCAG+AGG | - | chr2_2:61054540-61054559 | None:intergenic | 40.0% |
| TGAAAGAGTGAGAGTAAGAG+AGG | - | chr2_2:61054569-61054588 | None:intergenic | 40.0% | |
| ACAACAACCTCAAAATCCAC+AGG | - | chr2_2:61054650-61054669 | None:intergenic | 40.0% | |
| TATGATCTCTTTCATGAGGG+TGG | + | chr2_2:61054934-61054953 | Msa0262220:intron | 40.0% | |
| ATTCAGTTGACCAGTTGACA+TGG | - | chr2_2:61055082-61055101 | None:intergenic | 40.0% | |
| ATGTCAACTGGTCAACTGAA+TGG | + | chr2_2:61055081-61055100 | Msa0262220:intron | 40.0% | |
| ! | TCAACAAAATCATGGTGCCA+TGG | - | chr2_2:61055279-61055298 | None:intergenic | 40.0% |
| ! | TAACTGCATGTTTGGATTGG+CGG | - | chr2_2:61055356-61055375 | None:intergenic | 40.0% |
| AGCACTTTAACCACAAGGAA+CGG | - | chr2_2:61055431-61055450 | None:intergenic | 40.0% | |
| ! | TTGATAGCACTTGTAGCTAC+AGG | + | chr2_2:61055568-61055587 | Msa0262220:intron | 40.0% |
| ! | TCAGTGAAAGACACGCTTTT+TGG | - | chr2_2:61055596-61055615 | None:intergenic | 40.0% |
| ! | AAAAGCGTGTCTTTCACTGA+AGG | + | chr2_2:61055596-61055615 | Msa0262220:intron | 40.0% |
| ! | CTAAGGTACTACGAGTAAGA+CGG | - | chr2_2:61055910-61055929 | None:intergenic | 40.0% |
| TTACTCGTAGTACCTTAGAC+AGG | + | chr2_2:61055912-61055931 | Msa0262220:intron | 40.0% | |
| TACTCGTAGTACCTTAGACA+GGG | + | chr2_2:61055913-61055932 | Msa0262220:intron | 40.0% | |
| ATGACATGTGCACATTCCTT+TGG | + | chr2_2:61056088-61056107 | Msa0262220:intron | 40.0% | |
| TACCAAGGCAAATTGGACAT+TGG | - | chr2_2:61056461-61056480 | None:intergenic | 40.0% | |
| CTCAACTATACCATCCAGAA+AGG | - | chr2_2:61056497-61056516 | None:intergenic | 40.0% | |
| ! | GACATGCTATTTGAATGACG+TGG | + | chr2_2:61057072-61057091 | Msa0262220:intron | 40.0% |
| AACAACAGGCAATCACACTA+TGG | - | chr2_2:61057146-61057165 | None:intergenic | 40.0% | |
| CATTGACAAATCAATGCGAC+TGG | + | chr2_2:61057375-61057394 | Msa0262220:CDS | 40.0% | |
| TTGACAAATCAATGCGACTG+GGG | + | chr2_2:61057377-61057396 | Msa0262220:CDS | 40.0% | |
| GTAGTTTGGATCATCTCTCA+AGG | - | chr2_2:61057599-61057618 | None:intergenic | 40.0% | |
| ATTAGGACAAAGTAGTGAGC+TGG | - | chr2_2:61057684-61057703 | None:intergenic | 40.0% | |
| GAAATTCAAGCTCCTGCAAT+GGG | - | chr2_2:61057767-61057786 | None:intergenic | 40.0% | |
| TCAAGGATCTGAAGAAAACG+AGG | + | chr2_2:61058232-61058251 | Msa0262220:CDS | 40.0% | |
| TAGAAAGCTTACTTGGGGAA+GGG | + | chr2_2:61058454-61058473 | Msa0262220:CDS | 40.0% | |
| AGTAACACAAGATATGGCAG+TGG | + | chr2_2:61058488-61058507 | Msa0262220:CDS | 40.0% | |
| CTTGAATGAGAACACTGATG+AGG | + | chr2_2:61058577-61058596 | Msa0262220:CDS | 40.0% | |
| TCATCTCATGTTCGTTTCTC+TGG | + | chr2_2:61058737-61058756 | Msa0262220:CDS | 40.0% | |
| TGGACAAAGAAACTACACCA+AGG | + | chr2_2:61058757-61058776 | Msa0262220:CDS | 40.0% | |
| AGGTTCTTGACAGACACATT+TGG | - | chr2_2:61058810-61058829 | None:intergenic | 40.0% | |
| ACGAGGATCTCACTTCATAA+AGG | - | chr2_2:61058830-61058849 | None:intergenic | 40.0% | |
| GAGTTGAACTTGATATCCAG+AGG | + | chr2_2:61058902-61058921 | Msa0262220:intron | 40.0% | |
| GTTGAGATACTGGCAGTTAA+AGG | + | chr2_2:61059199-61059218 | Msa0262220:CDS | 40.0% | |
| ATGATAGCTCATCGAAATCC+AGG | - | chr2_2:61059270-61059289 | None:intergenic | 40.0% | |
| TTTCGATGAGCTATCATCGT+TGG | + | chr2_2:61059273-61059292 | Msa0262220:CDS | 40.0% | |
| TTTGCAAGCTCATGAAACTG+TGG | + | chr2_2:61059327-61059346 | Msa0262220:intron | 40.0% | |
| TTCAGATTCTGGCATACAAG+AGG | + | chr2_2:61059648-61059667 | Msa0262220:intron | 40.0% | |
| !! | TATTTATTGGTTTGGGTGGC+AGG | + | chr2_2:61059687-61059706 | Msa0262220:three_prime_UTR | 40.0% |
| GAGAGAGAGAGAGAGATTGT+TGG | - | chr2_2:61054026-61054045 | None:intergenic | 45.0% | |
| !! | ATCTTCCATTGACTCGGGTA+AGG | - | chr2_2:61054097-61054116 | None:intergenic | 45.0% |
| CATCTTCCTCTTGTTCGAGT+TGG | - | chr2_2:61054191-61054210 | None:intergenic | 45.0% | |
| GACGAAGATGACGATGAAGA+AGG | + | chr2_2:61054309-61054328 | Msa0262220:CDS | 45.0% | |
| GAGAGTAAGAGAGGTTACTC+AGG | - | chr2_2:61054560-61054579 | None:intergenic | 45.0% | |
| ! | TTTGGAGTAGCCATGTCAAC+TGG | + | chr2_2:61055069-61055088 | Msa0262220:intron | 45.0% |
| CTATCAAATTGCAGCCATGG+TGG | - | chr2_2:61055555-61055574 | None:intergenic | 45.0% | |
| GTGCTATCAAATTGCAGCCA+TGG | - | chr2_2:61055558-61055577 | None:intergenic | 45.0% | |
| CTACTACTAGTCCCAAAGAC+TGG | + | chr2_2:61055703-61055722 | Msa0262220:intron | 45.0% | |
| !!! | TAGGCATGCCTTTTAGGTTC+AGG | - | chr2_2:61055848-61055867 | None:intergenic | 45.0% |
| ! | GAACCTAAAAGGCATGCCTA+AGG | + | chr2_2:61055848-61055867 | Msa0262220:intron | 45.0% |
| ! | ATGCCTTAGGCATGCCTTTT+AGG | - | chr2_2:61055854-61055873 | None:intergenic | 45.0% |
| CAGATTGACACACATGCCTT+AGG | - | chr2_2:61055867-61055886 | None:intergenic | 45.0% | |
| CGAGTAAGACGGCAATAGAA+GGG | - | chr2_2:61055899-61055918 | None:intergenic | 45.0% | |
| ACGAGTAAGACGGCAATAGA+AGG | - | chr2_2:61055900-61055919 | None:intergenic | 45.0% | |
| AGTACCTTAGACAGGGCTTT+AGG | + | chr2_2:61055920-61055939 | Msa0262220:intron | 45.0% | |
| TTTAGGTGCCTTTGGCTACA+CGG | + | chr2_2:61055937-61055956 | Msa0262220:intron | 45.0% | |
| ACAAAACACCGTGTAGCCAA+AGG | - | chr2_2:61055948-61055967 | None:intergenic | 45.0% | |
| GTCCAATGTCCAATTTGCCT+TGG | + | chr2_2:61056456-61056475 | Msa0262220:CDS | 45.0% | |
| CAATGCATTCCCTGCAAAAG+CGG | - | chr2_2:61057360-61057379 | None:intergenic | 45.0% | |
| ACTTCAACTGCAACTGTCAG+CGG | - | chr2_2:61057442-61057461 | None:intergenic | 45.0% | |
| !! | GCAATAAGGGCATCGTAGTT+TGG | - | chr2_2:61057613-61057632 | None:intergenic | 45.0% |
| CGAAATTCAAGCTCCTGCAA+TGG | - | chr2_2:61057768-61057787 | None:intergenic | 45.0% | |
| GGAGCTTGAATTTCGTGAAG+AGG | + | chr2_2:61057773-61057792 | Msa0262220:intron | 45.0% | |
| GGAGAAGAACCGAAATAAGC+AGG | + | chr2_2:61057794-61057813 | Msa0262220:CDS | 45.0% | |
| !! | GGTTTTGTCTCCTAGACTGA+AGG | - | chr2_2:61058199-61058218 | None:intergenic | 45.0% |
| CTTTCTATGCTTCCACCATC+AGG | - | chr2_2:61058380-61058399 | None:intergenic | 45.0% | |
| GAGAAAATCGAGGAGCTTCT+AGG | + | chr2_2:61058417-61058436 | Msa0262220:CDS | 45.0% | |
| CTAGAAAGCTTACTTGGGGA+AGG | + | chr2_2:61058453-61058472 | Msa0262220:CDS | 45.0% | |
| AGAAAGCTTACTTGGGGAAG+GGG | + | chr2_2:61058455-61058474 | Msa0262220:CDS | 45.0% | |
| AACACAAGATATGGCAGTGG+TGG | + | chr2_2:61058491-61058510 | Msa0262220:CDS | 45.0% | |
| ACCTAGACATTCGACCACTA+CGG | - | chr2_2:61058538-61058557 | None:intergenic | 45.0% | |
| TAGTGGTCGAATGTCTAGGT+TGG | + | chr2_2:61058538-61058557 | Msa0262220:CDS | 45.0% | |
| CAAAGAAACTACACCAAGGC+TGG | + | chr2_2:61058761-61058780 | Msa0262220:CDS | 45.0% | |
| TGAGGTCTAGCATAAGTGGT+TGG | - | chr2_2:61058948-61058967 | None:intergenic | 45.0% | |
| TTGTGACAAGACAGCTGATG+AGG | + | chr2_2:61059237-61059256 | Msa0262220:CDS | 45.0% | |
| TTGTGTGTGTGTGTGTGTGT+GGG | - | chr2_2:61059574-61059593 | None:intergenic | 45.0% | |
| GATTCTGGCATACAAGAGGA+AGG | + | chr2_2:61059652-61059671 | Msa0262220:intron | 45.0% | |
| !! | TCGAGTTGGTCGATGAAGTG+TGG | - | chr2_2:61054177-61054196 | None:intergenic | 50.0% |
| CATCGACCAACTCGAACAAG+AGG | + | chr2_2:61054182-61054201 | Msa0262220:CDS | 50.0% | |
| GATGAGGAAGAAGACGAGCA+AGG | + | chr2_2:61054243-61054262 | Msa0262220:CDS | 50.0% | |
| AGACGAGCAAGGAGAAGAAG+AGG | + | chr2_2:61054254-61054273 | Msa0262220:CDS | 50.0% | |
| GCAGCACCATGACGATGAAA+AGG | + | chr2_2:61054332-61054351 | Msa0262220:CDS | 50.0% | |
| ACGATGGGACACTGCGATTT+AGG | - | chr2_2:61055323-61055342 | None:intergenic | 50.0% | |
| !! | TGGTTGGTAACCGTTCCTTG+TGG | + | chr2_2:61055418-61055437 | Msa0262220:intron | 50.0% |
| ACTGGCATTGCAATCCACCA+TGG | + | chr2_2:61055538-61055557 | Msa0262220:intron | 50.0% | |
| !! | AATGCTTGCACCGCTTTTGC+AGG | + | chr2_2:61057347-61057366 | Msa0262220:CDS | 50.0% |
| !! | ATGCTTGCACCGCTTTTGCA+GGG | + | chr2_2:61057348-61057367 | Msa0262220:CDS | 50.0% |
| GATCATCTCTCAAGGAGCGA+CGG | - | chr2_2:61057591-61057610 | None:intergenic | 50.0% | |
| ATACCACTCTGTCCCATTGC+AGG | + | chr2_2:61057752-61057771 | Msa0262220:intron | 50.0% | |
| AGACTCATCTTCCGGTGATG+AGG | + | chr2_2:61058274-61058293 | Msa0262220:CDS | 50.0% | |
| GACTCATCTTCCGGTGATGA+GGG | + | chr2_2:61058275-61058294 | Msa0262220:CDS | 50.0% | |
| ACTCATCTTCCGGTGATGAG+GGG | + | chr2_2:61058276-61058295 | Msa0262220:CDS | 50.0% | |
| GGACTTGCCATTGACGATGA+GGG | - | chr2_2:61058359-61058378 | None:intergenic | 50.0% | |
| AGGACTTGCCATTGACGATG+AGG | - | chr2_2:61058360-61058379 | None:intergenic | 50.0% | |
| TCGTCAATGGCAAGTCCTGA+TGG | + | chr2_2:61058362-61058381 | Msa0262220:CDS | 50.0% | |
| TCAATGGCAAGTCCTGATGG+TGG | + | chr2_2:61058365-61058384 | Msa0262220:CDS | 50.0% | |
| AAATCGAGGAGCTTCTAGGC+TGG | + | chr2_2:61058421-61058440 | Msa0262220:CDS | 50.0% | |
| ACAAGATATGGCAGTGGTGG+TGG | + | chr2_2:61058494-61058513 | Msa0262220:CDS | 50.0% | |
| CCTAGACATTCGACCACTAC+GGG | - | chr2_2:61058537-61058556 | None:intergenic | 50.0% | |
| AGATGAAGCTTCTCCAGCCT+TGG | - | chr2_2:61058777-61058796 | None:intergenic | 50.0% | |
| CAGTGTGTGTTGTCAACCTC+TGG | - | chr2_2:61058921-61058940 | None:intergenic | 50.0% | |
| CCACTGAGGTCTAGCATAAG+TGG | - | chr2_2:61058952-61058971 | None:intergenic | 50.0% | |
| CCACTTATGCTAGACCTCAG+TGG | + | chr2_2:61058949-61058968 | Msa0262220:intron | 50.0% | |
| TATGCTAGACCTCAGTGGTC+TGG | + | chr2_2:61058954-61058973 | Msa0262220:intron | 50.0% | |
| AGCTGATGAGGATTCAGTCC+TGG | + | chr2_2:61059249-61059268 | Msa0262220:CDS | 50.0% | |
| GTAGACACGTCTTCGATCAG+AGG | + | chr2_2:61059518-61059537 | Msa0262220:intron | 50.0% | |
| CTTGTGTGTGTGTGTGTGTG+TGG | - | chr2_2:61059575-61059594 | None:intergenic | 50.0% | |
| ! | GCATACAAGAGGAAGGTGTG+AGG | + | chr2_2:61059659-61059678 | Msa0262220:CDS | 50.0% |
| CTCGGGTAAGGAACGCTTCT+GGG | - | chr2_2:61054085-61054104 | None:intergenic | 55.0% | |
| ACTCGGGTAAGGAACGCTTC+TGG | - | chr2_2:61054086-61054105 | None:intergenic | 55.0% | |
| GCGTTCCTTACCCGAGTCAA+TGG | + | chr2_2:61054089-61054108 | Msa0262220:CDS | 55.0% | |
| GTTCGCGGTGATGCTTGACA+TGG | - | chr2_2:61054155-61054174 | None:intergenic | 55.0% | |
| GGTCGATGAAGTGTGGTTCG+CGG | - | chr2_2:61054170-61054189 | None:intergenic | 55.0% | |
| !! | CTGCATGTTTGGATTGGCGG+TGG | - | chr2_2:61055353-61055372 | None:intergenic | 55.0% |
| GGCACCTAAAGCCCTGTCTA+AGG | - | chr2_2:61055927-61055946 | None:intergenic | 55.0% | |
| !! | GACAGGGCTTTAGGTGCCTT+TGG | + | chr2_2:61055929-61055948 | Msa0262220:intron | 55.0% |
| CACAATGTGTGCGGCAAGCA+GGG | - | chr2_2:61057564-61057583 | None:intergenic | 55.0% | |
| GACGGCTAGCACAATGTGTG+CGG | - | chr2_2:61057573-61057592 | None:intergenic | 55.0% | |
| CTCATCTTCCGGTGATGAGG+GGG | + | chr2_2:61058277-61058296 | Msa0262220:CDS | 55.0% | |
| TCATCTTCCGGTGATGAGGG+GGG | + | chr2_2:61058278-61058297 | Msa0262220:CDS | 55.0% | |
| TTCTGTACCCCCCTCATCAC+CGG | - | chr2_2:61058288-61058307 | None:intergenic | 55.0% | |
| CATTGACGATGAGGGCTGAG+AGG | - | chr2_2:61058351-61058370 | None:intergenic | 55.0% | |
| CTCTCAGCCCTCATCGTCAA+TGG | + | chr2_2:61058349-61058368 | Msa0262220:CDS | 55.0% | |
| AAGCTTACTTGGGGAAGGGG+TGG | + | chr2_2:61058458-61058477 | Msa0262220:CDS | 55.0% | |
| ! | CTTGGGGAAGGGGTGGTTTT+CGG | + | chr2_2:61058465-61058484 | Msa0262220:CDS | 55.0% |
| AACGGCAAGAGTTCCCGTAG+TGG | + | chr2_2:61058521-61058540 | Msa0262220:CDS | 55.0% | |
| CCCGTAGTGGTCGAATGTCT+AGG | + | chr2_2:61058534-61058553 | Msa0262220:CDS | 55.0% | |
| GTGTGTGTGTGTGTGTGGGT+GGG | - | chr2_2:61059570-61059589 | None:intergenic | 55.0% | |
| TGTGTGTGTGTGTGTGTGGG+TGG | - | chr2_2:61059571-61059590 | None:intergenic | 55.0% | |
| GGTAAGGAACGCTTCTGGGC+TGG | - | chr2_2:61054081-61054100 | None:intergenic | 60.0% | |
| GGCGGTGGCAGAATCACGAT+GGG | - | chr2_2:61055338-61055357 | None:intergenic | 60.0% | |
| TGGCGGTGGCAGAATCACGA+TGG | - | chr2_2:61055339-61055358 | None:intergenic | 60.0% | |
| GGCGTGCGCCTGAACCTAAA+AGG | + | chr2_2:61055837-61055856 | Msa0262220:intron | 60.0% | |
| GCACAATGTGTGCGGCAAGC+AGG | - | chr2_2:61057565-61057584 | None:intergenic | 60.0% | |
| GCTCCTGCAATGGGACAGAG+TGG | - | chr2_2:61057758-61057777 | None:intergenic | 60.0% | |
| !! | GGCAGTGGTGGTGGTAGCAA+CGG | + | chr2_2:61058503-61058522 | Msa0262220:CDS | 60.0% |
| CTGTCACTGCCAGACCACTG+AGG | - | chr2_2:61058966-61058985 | None:intergenic | 60.0% | |
| CTCAGTGGTCTGGCAGTGAC+AGG | + | chr2_2:61058964-61058983 | Msa0262220:intron | 60.0% | |
| GTGTGTGTGTGTGGGTGGGT+GGG | - | chr2_2:61059566-61059585 | None:intergenic | 60.0% | |
| TGTGTGTGTGTGTGGGTGGG+TGG | - | chr2_2:61059567-61059586 | None:intergenic | 60.0% | |
| TGGGTGGCAGGCGTTTGAGA+TGG | + | chr2_2:61059699-61059718 | Msa0262220:three_prime_UTR | 60.0% | |
| GGTTCAGGCGCACGCCTATC+TGG | - | chr2_2:61055833-61055852 | None:intergenic | 65.0% | |
| GGGCTGAGAGGAGCGAACTC+TGG | - | chr2_2:61058339-61058358 | None:intergenic | 65.0% | |
| GTGTGTGTGGGTGGGTGGGT+GGG | - | chr2_2:61059562-61059581 | None:intergenic | 65.0% | |
| TGTGTGTGTGGGTGGGTGGG+TGG | - | chr2_2:61059563-61059582 | None:intergenic | 65.0% | |
| TGTGGGTGGGTGGGTGGGTG+GGG | - | chr2_2:61059557-61059576 | None:intergenic | 70.0% | |
| GTGTGGGTGGGTGGGTGGGT+GGG | - | chr2_2:61059558-61059577 | None:intergenic | 70.0% | |
| TGTGTGGGTGGGTGGGTGGG+TGG | - | chr2_2:61059559-61059578 | None:intergenic | 70.0% | |
| TGGGTGGGTGGGTGGGGGGA+GGG | - | chr2_2:61059551-61059570 | None:intergenic | 75.0% | |
| TGGGTGGGTGGGTGGGTGGG+GGG | - | chr2_2:61059555-61059574 | None:intergenic | 75.0% | |
| GTGGGTGGGTGGGTGGGTGG+GGG | - | chr2_2:61059556-61059575 | None:intergenic | 75.0% | |
| ! | GTGGGTGGGTGGGTGGGGGG+AGG | - | chr2_2:61059552-61059571 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 61053995 | 61059939 | 61053995 | ID=Msa0262220;Name=Msa0262220 |
| chr2_2 | mRNA | 61053995 | 61059939 | 61053995 | ID=Msa0262220-mRNA-1;Parent=Msa0262220;Name=Msa0262220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=80|0.88|0.9|1|1|1|10|260|489 |
| chr2_2 | exon | 61053995 | 61054366 | 61053995 | ID=Msa0262220-mRNA-1:exon:18766;Parent=Msa0262220-mRNA-1 |
| chr2_2 | exon | 61054525 | 61054561 | 61054525 | ID=Msa0262220-mRNA-1:exon:18767;Parent=Msa0262220-mRNA-1 |
| chr2_2 | exon | 61056419 | 61056477 | 61056419 | ID=Msa0262220-mRNA-1:exon:18768;Parent=Msa0262220-mRNA-1 |
| chr2_2 | exon | 61057317 | 61057398 | 61057317 | ID=Msa0262220-mRNA-1:exon:18769;Parent=Msa0262220-mRNA-1 |
| chr2_2 | exon | 61057549 | 61057669 | 61057549 | ID=Msa0262220-mRNA-1:exon:18770;Parent=Msa0262220-mRNA-1 |
| chr2_2 | exon | 61057774 | 61057815 | 61057774 | ID=Msa0262220-mRNA-1:exon:18771;Parent=Msa0262220-mRNA-1 |
| chr2_2 | exon | 61058080 | 61058598 | 61058080 | ID=Msa0262220-mRNA-1:exon:18772;Parent=Msa0262220-mRNA-1 |
| chr2_2 | exon | 61058729 | 61058836 | 61058729 | ID=Msa0262220-mRNA-1:exon:18773;Parent=Msa0262220-mRNA-1 |
| chr2_2 | exon | 61059163 | 61059345 | 61059163 | ID=Msa0262220-mRNA-1:exon:18774;Parent=Msa0262220-mRNA-1 |
| chr2_2 | exon | 61059653 | 61059939 | 61059653 | ID=Msa0262220-mRNA-1:exon:18775;Parent=Msa0262220-mRNA-1 |
| chr2_2 | five_prime_UTR | 61053995 | 61054074 | 61053995 | ID=Msa0262220-mRNA-1:five_prime_utr;Parent=Msa0262220-mRNA-1 |
| chr2_2 | CDS | 61054075 | 61054366 | 61054075 | ID=Msa0262220-mRNA-1:cds;Parent=Msa0262220-mRNA-1 |
| chr2_2 | CDS | 61054525 | 61054561 | 61054525 | ID=Msa0262220-mRNA-1:cds;Parent=Msa0262220-mRNA-1 |
| chr2_2 | CDS | 61056419 | 61056477 | 61056419 | ID=Msa0262220-mRNA-1:cds;Parent=Msa0262220-mRNA-1 |
| chr2_2 | CDS | 61057317 | 61057398 | 61057317 | ID=Msa0262220-mRNA-1:cds;Parent=Msa0262220-mRNA-1 |
| chr2_2 | CDS | 61057549 | 61057669 | 61057549 | ID=Msa0262220-mRNA-1:cds;Parent=Msa0262220-mRNA-1 |
| chr2_2 | CDS | 61057774 | 61057815 | 61057774 | ID=Msa0262220-mRNA-1:cds;Parent=Msa0262220-mRNA-1 |
| chr2_2 | CDS | 61058080 | 61058598 | 61058080 | ID=Msa0262220-mRNA-1:cds;Parent=Msa0262220-mRNA-1 |
| chr2_2 | CDS | 61058729 | 61058836 | 61058729 | ID=Msa0262220-mRNA-1:cds;Parent=Msa0262220-mRNA-1 |
| chr2_2 | CDS | 61059163 | 61059345 | 61059163 | ID=Msa0262220-mRNA-1:cds;Parent=Msa0262220-mRNA-1 |
| chr2_2 | CDS | 61059653 | 61059679 | 61059653 | ID=Msa0262220-mRNA-1:cds;Parent=Msa0262220-mRNA-1 |
| chr2_2 | three_prime_UTR | 61059680 | 61059939 | 61059680 | ID=Msa0262220-mRNA-1:three_prime_utr;Parent=Msa0262220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
