Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528060 | XP_013465131.1 | 98.214 | 504 | 9 | 0 | 1 | 504 | 1 | 504 | 0.0 | 1014 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528060 | sp|Q9FKW0|RNG1A_ARATH | 46.919 | 422 | 201 | 10 | 96 | 503 | 107 | 519 | 8.51e-113 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528060 | A0A072VC32 | 98.214 | 504 | 9 | 0 | 1 | 504 | 1 | 504 | 0.0 | 1014 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0171940 | Msa0528060 | 0.805906 | 1.064433e-49 | -8.615850e-47 |
| Msa0262220 | Msa0528060 | 0.871956 | 4.601718e-67 | -8.615850e-47 |
| Msa0528060 | Msa0579770 | 0.814157 | 1.777342e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528060 | MtrunA17_Chr2g0324751 | 98.214 | 504 | 9 | 0 | 1 | 504 | 1 | 504 | 0.0 | 1014 |
| Msa0528060 | MtrunA17_Chr4g0046901 | 43.791 | 459 | 196 | 10 | 54 | 504 | 27 | 431 | 1.26e-108 | 330 |
| Msa0528060 | MtrunA17_Chr4g0028811 | 76.364 | 55 | 13 | 0 | 139 | 193 | 1 | 55 | 1.06e-25 | 100 |
| Msa0528060 | MtrunA17_Chr6g0481531 | 56.061 | 66 | 29 | 0 | 154 | 219 | 1 | 66 | 2.49e-19 | 84.3 |
| Msa0528060 | MtrunA17_Chr4g0048301 | 48.438 | 64 | 26 | 1 | 138 | 194 | 14 | 77 | 1.09e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528060 | AT5G44280.1 | 46.919 | 422 | 201 | 10 | 96 | 503 | 107 | 519 | 8.65e-114 | 346 |
| Msa0528060 | AT5G44280.3 | 48.148 | 405 | 185 | 11 | 114 | 503 | 3 | 397 | 2.33e-112 | 338 |
| Msa0528060 | AT1G03770.3 | 42.678 | 478 | 226 | 8 | 45 | 503 | 11 | 459 | 1.34e-103 | 318 |
| Msa0528060 | AT1G03770.1 | 42.857 | 476 | 226 | 8 | 45 | 503 | 11 | 457 | 6.37e-103 | 316 |
| Msa0528060 | AT1G03770.2 | 42.149 | 484 | 226 | 9 | 45 | 503 | 11 | 465 | 4.72e-101 | 312 |
| Msa0528060 | AT1G03770.6 | 45.823 | 395 | 184 | 6 | 112 | 503 | 1 | 368 | 8.05e-98 | 300 |
| Msa0528060 | AT1G03770.4 | 45.823 | 395 | 184 | 6 | 112 | 503 | 1 | 368 | 8.05e-98 | 300 |
| Msa0528060 | AT5G44280.2 | 41.355 | 428 | 219 | 13 | 96 | 503 | 107 | 522 | 3.99e-86 | 275 |
| Msa0528060 | AT1G03770.5 | 43.750 | 368 | 177 | 6 | 139 | 503 | 1 | 341 | 6.81e-82 | 258 |
| Msa0528060 | AT1G28327.1 | 29.333 | 150 | 83 | 6 | 357 | 502 | 142 | 272 | 6.34e-11 | 63.5 |
Find 116 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCATACTTCTCAATATT+TGG | 0.065158 | 4_1:+733860 | None:intergenic |
| GATCCAAAAGCATATTTAAA+AGG | 0.120306 | 4_1:-732131 | Msa0528060:CDS |
| GATAACTTATTCACTTTAAT+TGG | 0.166274 | 4_1:+731691 | None:intergenic |
| TTTAAAATTTAGTATACTTT+AGG | 0.241904 | 4_1:+731669 | None:intergenic |
| GGCATTATATTTATTGGTTT+GGG | 0.243293 | 4_1:-731817 | Msa0528060:three_prime_UTR |
| AAACCTTCATAATGATATTA+TGG | 0.245162 | 4_1:-731647 | Msa0528060:three_prime_UTR |
| GTGTGAGGCATTATATTTAT+TGG | 0.271156 | 4_1:-731823 | Msa0528060:exon |
| ATATATACCTCTTAAAATAT+TGG | 0.286157 | 4_1:-731592 | Msa0528060:three_prime_UTR |
| AGGCATTATATTTATTGGTT+TGG | 0.297228 | 4_1:-731818 | Msa0528060:three_prime_UTR |
| TCTGAAGAAAACGAGGAAAA+TGG | 0.308264 | 4_1:-733265 | Msa0528060:CDS |
| GCACAATGTGTGCGGCAAGC+AGG | 0.325018 | 4_1:+733941 | None:intergenic |
| TCATCTCATGTTCGTTTCTC+TGG | 0.325095 | 4_1:-732767 | Msa0528060:CDS |
| TAAGAAAACAAGAACTGTTA+TGG | 0.327255 | 4_1:-734179 | Msa0528060:CDS |
| GAGAAAATCGAGGAGCTTCT+AGG | 0.334537 | 4_1:-733087 | Msa0528060:CDS |
| TTGGATATAGAGTAGCAATA+AGG | 0.342425 | 4_1:+733879 | None:intergenic |
| CATATTTAAAAGGGGCCATT+TGG | 0.343398 | 4_1:-732121 | Msa0528060:intron |
| AAACATTGACCTGCTTATTT+CGG | 0.344036 | 4_1:+733700 | None:intergenic |
| ACTCGGGTAAGGAACGCTTC+TGG | 0.345928 | 4_1:+737462 | None:intergenic |
| CTCGGGTAAGGAACGCTTCT+GGG | 0.349317 | 4_1:+737463 | None:intergenic |
| TATTTATTGGTTTGGGTGGC+AGG | 0.358079 | 4_1:-731810 | Msa0528060:three_prime_UTR |
| CAAAAGCTAGAAAGCTTACT+TGG | 0.360216 | 4_1:-733057 | Msa0528060:CDS |
| GTTGAGATACTGGCAGTTAA+AGG | 0.360477 | 4_1:-732291 | Msa0528060:CDS |
| TTCAGAGTCAGAGGATTCAT+TGG | 0.362297 | 4_1:+737017 | None:intergenic |
| GCAATAAGGGCATCGTAGTT+TGG | 0.366494 | 4_1:+733893 | None:intergenic |
| ATCCAAAAGCATATTTAAAA+GGG | 0.378293 | 4_1:-732130 | Msa0528060:CDS |
| TTTCGGAGTAACACAAGATA+TGG | 0.404440 | 4_1:-733022 | Msa0528060:CDS |
| TTCTTCATCTTCCATTGACT+CGG | 0.410068 | 4_1:+737445 | None:intergenic |
| TTCATTCTTCTTCTTCAACT+TGG | 0.419557 | 4_1:-737533 | Msa0528060:five_prime_UTR |
| CATCTTCCTCTTGTTCGAGT+TGG | 0.425056 | 4_1:+737357 | None:intergenic |
| TGGATATAGAGTAGCAATAA+GGG | 0.426431 | 4_1:+733880 | None:intergenic |
| TGGAAGCATAGAAAGTGATA+TGG | 0.432789 | 4_1:-733119 | Msa0528060:CDS |
| AATGAAAGAGACTCATCTTC+CGG | 0.441228 | 4_1:-733238 | Msa0528060:CDS |
| CTTTCTATGCTTCCACCATC+AGG | 0.449616 | 4_1:+733127 | None:intergenic |
| AGTTGAAGAAGTTGAGATAC+TGG | 0.455290 | 4_1:-732301 | Msa0528060:CDS |
| ATCCTTGAATATCACTAGCT+TGG | 0.455511 | 4_1:+733287 | None:intergenic |
| ACGAGGATCTCACTTCATAA+AGG | 0.459351 | 4_1:+732677 | None:intergenic |
| CTCTCAGCCCTCATCGTCAA+TGG | 0.465700 | 4_1:-733155 | Msa0528060:CDS |
| TATTGAGAAGTATGAGGAAG+AGG | 0.469487 | 4_1:-733855 | Msa0528060:intron |
| ATCTTCCATTGACTCGGGTA+AGG | 0.473644 | 4_1:+737451 | None:intergenic |
| CTACCATAATATCATTATGA+AGG | 0.479150 | 4_1:+731644 | None:intergenic |
| ACAAGATATGGCAGTGGTGG+TGG | 0.479840 | 4_1:-733010 | Msa0528060:CDS |
| GCGTTCCTTACCCGAGTCAA+TGG | 0.485427 | 4_1:-737456 | Msa0528060:CDS |
| AGAAAGCTTACTTGGGGAAG+GGG | 0.485877 | 4_1:-733049 | Msa0528060:CDS |
| GGTAAGGAACGCTTCTGGGC+TGG | 0.487294 | 4_1:+737467 | None:intergenic |
| TCCAAATATTGAGAAGTATG+AGG | 0.490054 | 4_1:-733861 | Msa0528060:CDS |
| CAAAGAAACTACACCAAGGC+TGG | 0.492616 | 4_1:-732743 | Msa0528060:CDS |
| CATTGACAAATCAATGCGAC+TGG | 0.495504 | 4_1:-734128 | Msa0528060:CDS |
| AGGTTCTTGACAGACACATT+TGG | 0.497021 | 4_1:+732697 | None:intergenic |
| CACAATGTGTGCGGCAAGCA+GGG | 0.500661 | 4_1:+733942 | None:intergenic |
| GACTCATCTTCCGGTGATGA+GGG | 0.508584 | 4_1:-733229 | Msa0528060:CDS |
| CCTAGACATTCGACCACTAC+GGG | 0.509009 | 4_1:+732970 | None:intergenic |
| AACCAAGCTAGTGATATTCA+AGG | 0.512189 | 4_1:-733289 | Msa0528060:CDS |
| GTCCAATGTCCAATTTGCCT+TGG | 0.513498 | 4_1:-735046 | Msa0528060:intron |
| GCAGCACCATGACGATGAAA+AGG | 0.517328 | 4_1:-737213 | Msa0528060:CDS |
| AGATGAAGCTTCTCCAGCCT+TGG | 0.519875 | 4_1:+732730 | None:intergenic |
| AGCTGATGAGGATTCAGTCC+TGG | 0.521897 | 4_1:-732241 | Msa0528060:CDS |
| TTTCGATGAGCTATCATCGT+TGG | 0.522619 | 4_1:-732217 | Msa0528060:CDS |
| AGACGAGCAAGGAGAAGAAG+AGG | 0.522708 | 4_1:-737291 | Msa0528060:CDS |
| AAAAGCTAGAAAGCTTACTT+GGG | 0.524304 | 4_1:-733056 | Msa0528060:CDS |
| GACGAAGATGACGATGAAGA+AGG | 0.526802 | 4_1:-737236 | Msa0528060:CDS |
| GGCAGTGGTGGTGGTAGCAA+CGG | 0.528099 | 4_1:-733001 | Msa0528060:CDS |
| GTCACAAATGAACTTGAACT+TGG | 0.528949 | 4_1:+733355 | None:intergenic |
| GGGCTGAGAGGAGCGAACTC+TGG | 0.529329 | 4_1:+733168 | None:intergenic |
| ATGATAGCTCATCGAAATCC+AGG | 0.532453 | 4_1:+732223 | None:intergenic |
| TGGGTGGCAGGCGTTTGAGA+TGG | 0.533887 | 4_1:-731798 | Msa0528060:three_prime_UTR |
| GGAGAAGAACCGAAATAAGC+AGG | 0.536321 | 4_1:-733709 | Msa0528060:intron |
| ACCTAGACATTCGACCACTA+CGG | 0.538677 | 4_1:+732969 | None:intergenic |
| TCTTCATCTTCCATTGACTC+GGG | 0.539473 | 4_1:+737446 | None:intergenic |
| CTCATCTTCCGGTGATGAGG+GGG | 0.542483 | 4_1:-733227 | Msa0528060:CDS |
| CCCGTAGTGGTCGAATGTCT+AGG | 0.544547 | 4_1:-732970 | Msa0528060:CDS |
| CTAGAAAGCTTACTTGGGGA+AGG | 0.545363 | 4_1:-733051 | Msa0528060:CDS |
| AGACTCATCTTCCGGTGATG+AGG | 0.546223 | 4_1:-733230 | Msa0528060:CDS |
| AAGCTTACTTGGGGAAGGGG+TGG | 0.546390 | 4_1:-733046 | Msa0528060:CDS |
| ATTATATTTATTGGTTTGGG+TGG | 0.547028 | 4_1:-731814 | Msa0528060:three_prime_UTR |
| TCAACTTCTTCAACTGTCAA+AGG | 0.556424 | 4_1:+732309 | None:intergenic |
| ATCAAAGAAACCTTCAGTCT+AGG | 0.562587 | 4_1:-733318 | Msa0528060:CDS |
| GGAGCTTGAATTTCGTGAAG+AGG | 0.563934 | 4_1:-733730 | Msa0528060:CDS |
| GATTCAAGCTTCAATAGCAA+AGG | 0.564070 | 4_1:-733425 | Msa0528060:CDS |
| TAGAAAGCTTACTTGGGGAA+GGG | 0.564314 | 4_1:-733050 | Msa0528060:CDS |
| AAATCGAGGAGCTTCTAGGC+TGG | 0.565613 | 4_1:-733083 | Msa0528060:CDS |
| ACGAAGATGACGATGAAGAA+GGG | 0.568533 | 4_1:-737235 | Msa0528060:CDS |
| CAATGCATTCCCTGCAAAAG+CGG | 0.577701 | 4_1:+734146 | None:intergenic |
| TCGTCAATGGCAAGTCCTGA+TGG | 0.582981 | 4_1:-733142 | Msa0528060:CDS |
| TTGTGACAAGACAGCTGATG+AGG | 0.583484 | 4_1:-732253 | Msa0528060:CDS |
| GGACTTGCCATTGACGATGA+GGG | 0.585871 | 4_1:+733148 | None:intergenic |
| CATCGACCAACTCGAACAAG+AGG | 0.594268 | 4_1:-737363 | Msa0528060:CDS |
| GATGAGGAAGAAGACGAGCA+AGG | 0.608097 | 4_1:-737302 | Msa0528060:CDS |
| GACGGCTAGCACAATGTGTG+CGG | 0.610661 | 4_1:+733933 | None:intergenic |
| TACCAAGGCAAATTGGACAT+TGG | 0.611122 | 4_1:+735044 | None:intergenic |
| TTCAGATTCTGGCATACAAG+AGG | 0.611493 | 4_1:-731849 | Msa0528060:intron |
| TCCAAAAGCATATTTAAAAG+GGG | 0.611532 | 4_1:-732129 | Msa0528060:CDS |
| AACACAAGATATGGCAGTGG+TGG | 0.615387 | 4_1:-733013 | Msa0528060:CDS |
| GATCATCTCTCAAGGAGCGA+CGG | 0.617352 | 4_1:+733915 | None:intergenic |
| TAGTGGTCGAATGTCTAGGT+TGG | 0.617463 | 4_1:-732966 | Msa0528060:CDS |
| AGGACTTGCCATTGACGATG+AGG | 0.621059 | 4_1:+733147 | None:intergenic |
| ATTGACAAATCAATGCGACT+GGG | 0.624131 | 4_1:-734127 | Msa0528060:CDS |
| GGTCGATGAAGTGTGGTTCG+CGG | 0.626767 | 4_1:+737378 | None:intergenic |
| GTAGTTTGGATCATCTCTCA+AGG | 0.629290 | 4_1:+733907 | None:intergenic |
| GATTCTGGCATACAAGAGGA+AGG | 0.641703 | 4_1:-731845 | Msa0528060:CDS |
| ACTCATCTTCCGGTGATGAG+GGG | 0.642493 | 4_1:-733228 | Msa0528060:CDS |
| CATTGACGATGAGGGCTGAG+AGG | 0.642573 | 4_1:+733156 | None:intergenic |
| TCGAGTTGGTCGATGAAGTG+TGG | 0.648127 | 4_1:+737371 | None:intergenic |
| TGATCAACAAGAGCAAGATG+AGG | 0.648875 | 4_1:-737318 | Msa0528060:CDS |
| AGTAACACAAGATATGGCAG+TGG | 0.654930 | 4_1:-733016 | Msa0528060:CDS |
| TTTGCAAGCTCATGAAACTG+TGG | 0.659544 | 4_1:-732163 | Msa0528060:CDS |
| TCAATGGCAAGTCCTGATGG+TGG | 0.664275 | 4_1:-733139 | Msa0528060:CDS |
| CTTGAATGAGAACACTGATG+AGG | 0.666277 | 4_1:-732927 | Msa0528060:intron |
| AACGGCAAGAGTTCCCGTAG+TGG | 0.671350 | 4_1:-732983 | Msa0528060:CDS |
| GTTCGCGGTGATGCTTGACA+TGG | 0.673542 | 4_1:+737393 | None:intergenic |
| GCATACAAGAGGAAGGTGTG+AGG | 0.682202 | 4_1:-731838 | Msa0528060:exon |
| GATATAAATAGAGAAAATCG+AGG | 0.683062 | 4_1:-733097 | Msa0528060:CDS |
| TCAAGGATCTGAAGAAAACG+AGG | 0.686356 | 4_1:-733272 | Msa0528060:CDS |
| AAAGCTAGAAAGCTTACTTG+GGG | 0.686965 | 4_1:-733055 | Msa0528060:CDS |
| TCATCTTCCGGTGATGAGGG+GGG | 0.693570 | 4_1:-733226 | Msa0528060:CDS |
| TTGACAAATCAATGCGACTG+GGG | 0.721274 | 4_1:-734126 | Msa0528060:intron |
| TGGACAAAGAAACTACACCA+AGG | 0.745241 | 4_1:-732747 | Msa0528060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATCATAAATAATAAATC+CGG | + | chr4_1:735124-735143 | None:intergenic | 10.0% |
| !!! | TTTAAAATTTAGTATACTTT+AGG | + | chr4_1:737445-737464 | None:intergenic | 10.0% |
| !!! | AACTGATTTTTTTTAACATT+CGG | - | chr4_1:733294-733313 | Msa0528060:CDS | 15.0% |
| !!! | TTAATTTAATAGAGCATTTT+AGG | - | chr4_1:733599-733618 | Msa0528060:intron | 15.0% |
| !! | TTGAAAGAACAATTTAATAT+GGG | + | chr4_1:733963-733982 | None:intergenic | 15.0% |
| !! | ATTGAAAGAACAATTTAATA+TGG | + | chr4_1:733964-733983 | None:intergenic | 15.0% |
| !! | AAATGTTACTAATATTTAGT+TGG | - | chr4_1:734199-734218 | Msa0528060:intron | 15.0% |
| !! | ATTAGATACAATAGAAAATA+TGG | + | chr4_1:734261-734280 | None:intergenic | 15.0% |
| !! | TGTCAATTATATTTATAACA+AGG | - | chr4_1:734370-734389 | Msa0528060:intron | 15.0% |
| !!! | TAATAAAATTTGAAATTGCA+TGG | + | chr4_1:734805-734824 | None:intergenic | 15.0% |
| !! | TTATAAGATATGTATTTAGT+TGG | + | chr4_1:735567-735586 | None:intergenic | 15.0% |
| !!! | AATATATTAACAAAGCATTT+TGG | + | chr4_1:736652-736671 | None:intergenic | 15.0% |
| !!! | ATTATACAATTGTTTTCAAT+GGG | + | chr4_1:736693-736712 | None:intergenic | 15.0% |
| !!! | TATTATACAATTGTTTTCAA+TGG | + | chr4_1:736694-736713 | None:intergenic | 15.0% |
| !!! | TTTTCTCAAATTTATTATCA+TGG | + | chr4_1:737082-737101 | None:intergenic | 15.0% |
| !! | ATATATACCTCTTAAAATAT+TGG | - | chr4_1:737519-737538 | Msa0528060:five_prime_UTR | 15.0% |
| !!! | ATCGTTTTCAATTATAAACA+TGG | + | chr4_1:732380-732399 | None:intergenic | 20.0% |
| !!! | TTCAAAACGTATTTTTTGTA+AGG | - | chr4_1:732676-732695 | Msa0528060:intron | 20.0% |
| !! | TTATTATGAAATACAGTTTC+AGG | + | chr4_1:732772-732791 | None:intergenic | 20.0% |
| !! | CTATGATGAAAAACAAAAAA+GGG | + | chr4_1:733365-733384 | None:intergenic | 20.0% |
| !! | ACTATGATGAAAAACAAAAA+AGG | + | chr4_1:733366-733385 | None:intergenic | 20.0% |
| !! | CTAAAATATTGAAATCATGA+TGG | - | chr4_1:733538-733557 | Msa0528060:intron | 20.0% |
| !!! | TAAAACTTCTTTTTTACCAA+AGG | + | chr4_1:733716-733735 | None:intergenic | 20.0% |
| !!! | GGTAAAAAAGAAGTTTTAAA+TGG | - | chr4_1:733718-733737 | Msa0528060:CDS | 20.0% |
| !! | TTATGAATACTATTCTTGAA+AGG | - | chr4_1:733866-733885 | Msa0528060:CDS | 20.0% |
| !! | AATGATTATGAACATGTTAA+CGG | - | chr4_1:733893-733912 | Msa0528060:CDS | 20.0% |
| !!! | TACAAGTTGAAATGAAAATT+TGG | - | chr4_1:733916-733935 | Msa0528060:CDS | 20.0% |
| !!! | ATTTTCGTAGTATACTTAAT+TGG | - | chr4_1:734399-734418 | Msa0528060:intron | 20.0% |
| !!! | ATTGTGAATACTGATTTAAA+AGG | - | chr4_1:734627-734646 | Msa0528060:intron | 20.0% |
| !! | TATGATATATATATCATCTC+AGG | - | chr4_1:735135-735154 | Msa0528060:intron | 20.0% |
| !! | GATAAGATTCAAGATTAATA+AGG | + | chr4_1:735615-735634 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTCTTTCTTTTC+TGG | - | chr4_1:735661-735680 | Msa0528060:intron | 20.0% |
| !!! | TTTCTTTTATCACTTATTTC+TGG | - | chr4_1:736457-736476 | Msa0528060:intron | 20.0% |
| !!! | TTATACAATTGTTTTCAATG+GGG | + | chr4_1:736692-736711 | None:intergenic | 20.0% |
| !!! | ATCCAAAAGCATATTTAAAA+GGG | - | chr4_1:736981-737000 | Msa0528060:intron | 20.0% |
| !! | AAAAAAAGACTTTAAGCAAT+TGG | + | chr4_1:737383-737402 | None:intergenic | 20.0% |
| !! | GATAACTTATTCACTTTAAT+TGG | + | chr4_1:737423-737442 | None:intergenic | 20.0% |
| !! | AAACCTTCATAATGATATTA+TGG | - | chr4_1:737464-737483 | Msa0528060:CDS | 20.0% |
| !!! | ACAAAAACCAATATTTTAAG+AGG | + | chr4_1:737529-737548 | None:intergenic | 20.0% |
| !!! | TTTGTTCATGTTCTAAAGTT+TGG | - | chr4_1:732051-732070 | Msa0528060:intron | 25.0% |
| ! | CTAATCTTCAAATCAAACTT+AGG | - | chr4_1:732578-732597 | Msa0528060:intron | 25.0% |
| ! | TTAAAGCTTCAACAAAATCA+TGG | + | chr4_1:732853-732872 | None:intergenic | 25.0% |
| ! | AAACAATTTAACTGCATGTT+TGG | + | chr4_1:732930-732949 | None:intergenic | 25.0% |
| !!! | TAAAGGATGTTGTTTTATAG+TGG | + | chr4_1:733057-733076 | None:intergenic | 25.0% |
| ! | TTCCTGATGATATTGTTAAA+GGG | + | chr4_1:733330-733349 | None:intergenic | 25.0% |
| !!! | ACTTTTCCATTTTATTTGCA+TGG | - | chr4_1:733766-733785 | Msa0528060:intron | 25.0% |
| ! | ATAGAAAATATGGAACTAAG+AGG | + | chr4_1:734251-734270 | None:intergenic | 25.0% |
| !! | ATCTAAGATCATTTGTTACT+TGG | - | chr4_1:734584-734603 | Msa0528060:intron | 25.0% |
| ! | TAAGAAAACAAGAACTGTTA+TGG | - | chr4_1:734932-734951 | Msa0528060:intron | 25.0% |
| ! | GGCATATTAAATAAATAAGG+TGG | + | chr4_1:735029-735048 | None:intergenic | 25.0% |
| ! | AGCGGCATATTAAATAAATA+AGG | + | chr4_1:735032-735051 | None:intergenic | 25.0% |
| ! | ACTTTGTCCTAATATATACA+CGG | - | chr4_1:735299-735318 | Msa0528060:intron | 25.0% |
| !! | CACTAGCTAAATTTTACAAA+AGG | + | chr4_1:735340-735359 | None:intergenic | 25.0% |
| !! | CAATAGCAAAGGTTTTTAAA+CGG | - | chr4_1:735697-735716 | Msa0528060:intron | 25.0% |
| ! | GATATAAATAGAGAAAATCG+AGG | - | chr4_1:736014-736033 | Msa0528060:intron | 25.0% |
| !! | TACGTAGTAACATTTTTCAT+TGG | + | chr4_1:736245-736264 | None:intergenic | 25.0% |
| ! | ATAAGTGATAAAAGAAAACG+AGG | + | chr4_1:736454-736473 | None:intergenic | 25.0% |
| !!! | CTTCAAAAAACAAAGCATTT+TGG | + | chr4_1:736624-736643 | None:intergenic | 25.0% |
| !! | GATCCAAAAGCATATTTAAA+AGG | - | chr4_1:736980-736999 | Msa0528060:intron | 25.0% |
| !! | TCCAAAAGCATATTTAAAAG+GGG | - | chr4_1:736982-737001 | Msa0528060:intron | 25.0% |
| ! | AAATCTTAATACTCACCAAA+TGG | + | chr4_1:737008-737027 | None:intergenic | 25.0% |
| ! | AAATGTAATCACATGTGTTA+TGG | - | chr4_1:737112-737131 | Msa0528060:intron | 25.0% |
| !! | AGGCATTATATTTATTGGTT+TGG | - | chr4_1:737293-737312 | Msa0528060:CDS | 25.0% |
| !!! | GGCATTATATTTATTGGTTT+GGG | - | chr4_1:737294-737313 | Msa0528060:CDS | 25.0% |
| !!! | ATTATATTTATTGGTTTGGG+TGG | - | chr4_1:737297-737316 | Msa0528060:CDS | 25.0% |
| ! | CTACCATAATATCATTATGA+AGG | + | chr4_1:737470-737489 | None:intergenic | 25.0% |
| ! | ATTTTTCCTTTTCATCGTCA+TGG | + | chr4_1:731907-731926 | None:intergenic | 30.0% |
| !!! | CGTTTAGCTTTTTTATCACA+TGG | - | chr4_1:731969-731988 | Msa0528060:intron | 30.0% |
| !! | TGGTTTGCATGTTTAGATTT+TGG | - | chr4_1:732353-732372 | Msa0528060:intron | 30.0% |
| TACTTTCTTCGATCATGAAA+TGG | + | chr4_1:732407-732426 | None:intergenic | 30.0% | |
| AATGAAAATATACGCCAAAG+TGG | + | chr4_1:732431-732450 | None:intergenic | 30.0% | |
| ! | TGGCGTATATTTTCATTACT+TGG | - | chr4_1:732434-732453 | Msa0528060:intron | 30.0% |
| !! | ACTTGGTACATTGTTTTTCA+TGG | - | chr4_1:732451-732470 | Msa0528060:intron | 30.0% |
| ATCTATGATCTCTTTCATGA+GGG | - | chr4_1:732497-732516 | Msa0528060:intron | 30.0% | |
| ACTTTAACAATGACACATAC+TGG | + | chr4_1:732540-732559 | None:intergenic | 30.0% | |
| CTTCAAATCAAACTTAGGTT+TGG | - | chr4_1:732583-732602 | Msa0528060:intron | 30.0% | |
| AAGGATTGTCATATACCATT+TGG | - | chr4_1:732695-732714 | Msa0528060:CDS | 30.0% | |
| ATTTGAATCATGACTCCAAA+TGG | + | chr4_1:732713-732732 | None:intergenic | 30.0% | |
| ATTTAACTGCATGTTTGGAT+TGG | + | chr4_1:732925-732944 | None:intergenic | 30.0% | |
| ATTCTTTCAATGTTTGTGCA+TGG | - | chr4_1:732964-732983 | Msa0528060:CDS | 30.0% | |
| TCCTGATGATATTGTTAAAG+GGG | + | chr4_1:733329-733348 | None:intergenic | 30.0% | |
| CTTCCTGATGATATTGTTAA+AGG | + | chr4_1:733331-733350 | None:intergenic | 30.0% | |
| AGTTATCAATAAAGCCAGAT+AGG | - | chr4_1:733383-733402 | Msa0528060:CDS | 30.0% | |
| !! | TGCATCATAATGTTTTTCAG+TGG | - | chr4_1:733569-733588 | Msa0528060:intron | 30.0% |
| ACAATGCCATGCAAATAAAA+TGG | + | chr4_1:733775-733794 | None:intergenic | 30.0% | |
| AAATGAAAATTTGGCATGTC+TGG | - | chr4_1:733925-733944 | Msa0528060:CDS | 30.0% | |
| AAAAACATACCAAGGCAAAT+TGG | + | chr4_1:734077-734096 | None:intergenic | 30.0% | |
| !! | ATGTTTTTGTTCAACCTTTC+TGG | - | chr4_1:734089-734108 | Msa0528060:intron | 30.0% |
| ACCATAACCTACTTCATTAT+TGG | - | chr4_1:734281-734300 | Msa0528060:intron | 30.0% | |
| TCCAATAATGAAGTAGGTTA+TGG | + | chr4_1:734285-734304 | None:intergenic | 30.0% | |
| CGAATTTCCAATAATGAAGT+AGG | + | chr4_1:734291-734310 | None:intergenic | 30.0% | |
| TGGAAATTCGATCATATTGA+AGG | - | chr4_1:734301-734320 | Msa0528060:intron | 30.0% | |
| GTAAGATAAGCATGAATACA+TGG | + | chr4_1:734339-734358 | None:intergenic | 30.0% | |
| TTCAAACTGAGACTTATTCA+TGG | + | chr4_1:734545-734564 | None:intergenic | 30.0% | |
| TGTGAACTCGTTTCTATAAA+CGG | - | chr4_1:734658-734677 | Msa0528060:intron | 30.0% | |
| ! | TATTTTATTAGCACCAGATG+TGG | - | chr4_1:734714-734733 | Msa0528060:intron | 30.0% |
| AGACAAATGCTAAAAACAAC+AGG | + | chr4_1:734768-734787 | None:intergenic | 30.0% | |
| TGGATATAGAGTAGCAATAA+GGG | + | chr4_1:735234-735253 | None:intergenic | 30.0% | |
| TTGGATATAGAGTAGCAATA+AGG | + | chr4_1:735235-735254 | None:intergenic | 30.0% | |
| ! | TCCAAATATTGAGAAGTATG+AGG | - | chr4_1:735250-735269 | Msa0528060:intron | 30.0% |
| TCCTCATACTTCTCAATATT+TGG | + | chr4_1:735254-735273 | None:intergenic | 30.0% | |
| AAACATTGACCTGCTTATTT+CGG | + | chr4_1:735414-735433 | None:intergenic | 30.0% | |
| ACATCAATCAGTAAAACATG+TGG | + | chr4_1:735508-735527 | None:intergenic | 30.0% | |
| ! | TAAGTTGTTGACTATCTACA+TGG | - | chr4_1:735528-735547 | Msa0528060:intron | 30.0% |
| ! | TGTATTTAGTTGGTATGCTA+CGG | + | chr4_1:735557-735576 | None:intergenic | 30.0% |
| !!! | ATCTCTTTCGTTTTTTCTGT+CGG | + | chr4_1:735920-735939 | None:intergenic | 30.0% |
| AAAAGCTAGAAAGCTTACTT+GGG | - | chr4_1:736055-736074 | Msa0528060:intron | 30.0% | |
| !!! | CTCCTTTTTTTCTCTTGTAA+TGG | - | chr4_1:736218-736237 | Msa0528060:intron | 30.0% |
| GTCCATTACAAGAGAAAAAA+AGG | + | chr4_1:736223-736242 | None:intergenic | 30.0% | |
| !! | CAAAAAACAAAGCATTTTGG+TGG | + | chr4_1:736621-736640 | None:intergenic | 30.0% |
| ! | ATTTCCAGTTCATCTTTTTG+TGG | + | chr4_1:736928-736947 | None:intergenic | 30.0% |
| !!! | TTTTCTGTTGTTTCAGATTC+TGG | - | chr4_1:737251-737270 | Msa0528060:CDS | 30.0% |
| ! | GTGTGAGGCATTATATTTAT+TGG | - | chr4_1:737288-737307 | Msa0528060:CDS | 30.0% |
| ! | TTCTTCATCTTCCATTGACT+CGG | + | chr4_1:731669-731688 | None:intergenic | 35.0% |
| GATGAAAAGGAAAAATCGCA+AGG | - | chr4_1:731911-731930 | Msa0528060:intron | 35.0% | |
| CCAGTTGAGAAAAACCAATT+GGG | + | chr4_1:732006-732025 | None:intergenic | 35.0% | |
| !!! | CCAATTGGTTTTTCTCAACT+GGG | - | chr4_1:732004-732023 | Msa0528060:intron | 35.0% |
| ! | AACTGGGTTATGCTTAGTTT+TGG | - | chr4_1:732020-732039 | Msa0528060:intron | 35.0% |
| !!! | AGATTCATGTTTTGATCCTG+TGG | - | chr4_1:732197-732216 | Msa0528060:CDS | 35.0% |
| ! | TTTTGATCCTGTGGATTTTG+AGG | - | chr4_1:732206-732225 | Msa0528060:CDS | 35.0% |
| !!! | TGGATTTTGAGGTTGTTGTT+TGG | - | chr4_1:732217-732236 | Msa0528060:CDS | 35.0% |
| CCAACAATGACAAATCAAAC+AGG | + | chr4_1:732336-732355 | None:intergenic | 35.0% | |
| !! | CCTGTTTGATTTGTCATTGT+TGG | - | chr4_1:732333-732352 | Msa0528060:intron | 35.0% |
| ATCGAAGAAAGTAACCACTT+TGG | - | chr4_1:732414-732433 | Msa0528060:intron | 35.0% | |
| CATCTATGATCTCTTTCATG+AGG | - | chr4_1:732496-732515 | Msa0528060:intron | 35.0% | |
| ! | GTTGTTACTTAGTGCATGTT+TGG | - | chr4_1:732794-732813 | Msa0528060:intron | 35.0% |
| TTAGTGCATGTTTGGATTGA+CGG | - | chr4_1:732802-732821 | Msa0528060:intron | 35.0% | |
| TGAGTTTGACAAAATCACCA+TGG | - | chr4_1:732825-732844 | Msa0528060:intron | 35.0% | |
| CAAACATTGAAAGAATGCAG+AGG | + | chr4_1:732960-732979 | None:intergenic | 35.0% | |
| TTTCAATGTTTGTGCATGGT+TGG | - | chr4_1:732968-732987 | Msa0528060:CDS | 35.0% | |
| ! | GTTAACAGTGCTATTGATTG+TGG | - | chr4_1:733006-733025 | Msa0528060:CDS | 35.0% |
| CCACTATGGCAAATTTGTAA+AGG | + | chr4_1:733074-733093 | None:intergenic | 35.0% | |
| CCTTTACAAATTTGCCATAG+TGG | - | chr4_1:733071-733090 | Msa0528060:CDS | 35.0% | |
| ! | AGTTCTTTTGCAAACCACTA+TGG | + | chr4_1:733088-733107 | None:intergenic | 35.0% |
| ! | ATAGTGGTTTGCAAAAGAAC+TGG | - | chr4_1:733087-733106 | Msa0528060:CDS | 35.0% |
| ! | ATGCACAAAGCTGAACATTT+TGG | + | chr4_1:733216-733235 | None:intergenic | 35.0% |
| AAAATCAGTTGCCAGTCTTT+GGG | + | chr4_1:733284-733303 | None:intergenic | 35.0% | |
| AAAAATCAGTTGCCAGTCTT+TGG | + | chr4_1:733285-733304 | None:intergenic | 35.0% | |
| ACCCCTTTAACAATATCATC+AGG | - | chr4_1:733325-733344 | Msa0528060:CDS | 35.0% | |
| !! | AGTGAGTTTGCTTGAAGTTT+TGG | - | chr4_1:733670-733689 | Msa0528060:intron | 35.0% |
| GGTTGAACAAAAACATACCA+AGG | + | chr4_1:734085-734104 | None:intergenic | 35.0% | |
| ! | TTTTGTTCAACCTTTCTGGA+TGG | - | chr4_1:734093-734112 | Msa0528060:intron | 35.0% |
| ACTATTACAGAGCTATCACT+AGG | - | chr4_1:734224-734243 | Msa0528060:intron | 35.0% | |
| CGTAGTATACTTAATTGGTC+AGG | - | chr4_1:734404-734423 | Msa0528060:intron | 35.0% | |
| GTGAACTCGTTTCTATAAAC+GGG | - | chr4_1:734659-734678 | Msa0528060:intron | 35.0% | |
| TGACATTTAACAACCACATC+TGG | + | chr4_1:734730-734749 | None:intergenic | 35.0% | |
| ATAATTCAAGCATAAGCTGC+AGG | + | chr4_1:734844-734863 | None:intergenic | 35.0% | |
| TGCAGCTTATGCTTGAATTA+TGG | - | chr4_1:734843-734862 | Msa0528060:intron | 35.0% | |
| CTGTTCAAACACAAAATGCT+TGG | + | chr4_1:734905-734924 | None:intergenic | 35.0% | |
| ! | CAAGCATTTTGTGTTTGAAC+AGG | - | chr4_1:734903-734922 | Msa0528060:intron | 35.0% |
| ATTGACAAATCAATGCGACT+GGG | - | chr4_1:734984-735003 | Msa0528060:intron | 35.0% | |
| AGATAAGCAAAGTAGAGACA+AGG | + | chr4_1:735073-735092 | None:intergenic | 35.0% | |
| ATGTAATGTCTGTATGTGAC+CGG | - | chr4_1:735102-735121 | Msa0528060:intron | 35.0% | |
| ! | TATTGAGAAGTATGAGGAAG+AGG | - | chr4_1:735256-735275 | Msa0528060:intron | 35.0% |
| AACAGGACCGTGTATATATT+AGG | + | chr4_1:735309-735328 | None:intergenic | 35.0% | |
| ! | TACAAAAGGTGCATGTAAAC+AGG | + | chr4_1:735326-735345 | None:intergenic | 35.0% |
| GATTCAAGCTTCAATAGCAA+AGG | - | chr4_1:735686-735705 | Msa0528060:intron | 35.0% | |
| GTCACAAATGAACTTGAACT+TGG | + | chr4_1:735759-735778 | None:intergenic | 35.0% | |
| ATCAAAGAAACCTTCAGTCT+AGG | - | chr4_1:735793-735812 | Msa0528060:intron | 35.0% | |
| AACCAAGCTAGTGATATTCA+AGG | - | chr4_1:735822-735841 | Msa0528060:intron | 35.0% | |
| ATCCTTGAATATCACTAGCT+TGG | + | chr4_1:735827-735846 | None:intergenic | 35.0% | |
| TCTGAAGAAAACGAGGAAAA+TGG | - | chr4_1:735846-735865 | Msa0528060:intron | 35.0% | |
| AATGAAAGAGACTCATCTTC+CGG | - | chr4_1:735873-735892 | Msa0528060:intron | 35.0% | |
| GACAGAAAAAACGAAAGAGA+TGG | - | chr4_1:735919-735938 | Msa0528060:intron | 35.0% | |
| ! | TGGAAGCATAGAAAGTGATA+TGG | - | chr4_1:735992-736011 | Msa0528060:intron | 35.0% |
| CAAAAGCTAGAAAGCTTACT+TGG | - | chr4_1:736054-736073 | Msa0528060:intron | 35.0% | |
| AAAGCTAGAAAGCTTACTTG+GGG | - | chr4_1:736056-736075 | Msa0528060:intron | 35.0% | |
| TTTCGGAGTAACACAAGATA+TGG | - | chr4_1:736089-736108 | Msa0528060:intron | 35.0% | |
| !! | AAAACAAAGCATTTTGGTGG+AGG | + | chr4_1:736618-736637 | None:intergenic | 35.0% |
| TCAACTTCTTCAACTGTCAA+AGG | + | chr4_1:736805-736824 | None:intergenic | 35.0% | |
| AGTTGAAGAAGTTGAGATAC+TGG | - | chr4_1:736810-736829 | Msa0528060:intron | 35.0% | |
| AGATCCACAAAAAGATGAAC+TGG | - | chr4_1:736921-736940 | Msa0528060:intron | 35.0% | |
| ! | GCCCCTTTTAAATATGCTTT+TGG | + | chr4_1:736986-737005 | None:intergenic | 35.0% |
| CATATTTAAAAGGGGCCATT+TGG | - | chr4_1:736990-737009 | Msa0528060:intron | 35.0% | |
| CCATGTTTGTGCTTTATAGA+AGG | + | chr4_1:737039-737058 | None:intergenic | 35.0% | |
| CCTTCTATAAAGCACAAACA+TGG | - | chr4_1:737036-737055 | Msa0528060:intron | 35.0% | |
| !! | TCTTCATCTTCCATTGACTC+GGG | + | chr4_1:731668-731687 | None:intergenic | 40.0% |
| TGATCAACAAGAGCAAGATG+AGG | - | chr4_1:731793-731812 | Msa0528060:three_prime_UTR | 40.0% | |
| ACGAAGATGACGATGAAGAA+GGG | - | chr4_1:731876-731895 | Msa0528060:intron | 40.0% | |
| !! | TGGTTTTACAGTGACCCAAT+TGG | - | chr4_1:731989-732008 | Msa0528060:intron | 40.0% |
| !!! | CCCAATTGGTTTTTCTCAAC+TGG | - | chr4_1:732003-732022 | Msa0528060:intron | 40.0% |
| CCCAGTTGAGAAAAACCAAT+TGG | + | chr4_1:732007-732026 | None:intergenic | 40.0% | |
| TTCAGAGTCAGAGGATTCAT+TGG | + | chr4_1:732097-732116 | None:intergenic | 40.0% | |
| ! | AGGTTTTTCTTCAGAGTCAG+AGG | + | chr4_1:732106-732125 | None:intergenic | 40.0% |
| TGAAAGAGTGAGAGTAAGAG+AGG | + | chr4_1:732135-732154 | None:intergenic | 40.0% | |
| ACAACAACCTCAAAATCCAC+AGG | + | chr4_1:732216-732235 | None:intergenic | 40.0% | |
| TATGATCTCTTTCATGAGGG+TGG | - | chr4_1:732500-732519 | Msa0528060:intron | 40.0% | |
| ! | TTTAGAGTAGCCATGTCAAC+TGG | - | chr4_1:732635-732654 | Msa0528060:intron | 40.0% |
| ATTCAGTTGACCAGTTGACA+TGG | + | chr4_1:732648-732667 | None:intergenic | 40.0% | |
| ATGTCAACTGGTCAACTGAA+TGG | - | chr4_1:732647-732666 | Msa0528060:intron | 40.0% | |
| ! | TCAACAAAATCATGGTGCCA+TGG | + | chr4_1:732845-732864 | None:intergenic | 40.0% |
| ! | TAACTGCATGTTTGGATTGG+CGG | + | chr4_1:732922-732941 | None:intergenic | 40.0% |
| CAATAGCACTGTTAACCACA+AGG | + | chr4_1:733002-733021 | None:intergenic | 40.0% | |
| ! | ACAGTGCTATTGATTGTGGA+AGG | - | chr4_1:733010-733029 | Msa0528060:CDS | 40.0% |
| ! | TTGATAGCACTTGTAGCTAC+AGG | - | chr4_1:733135-733154 | Msa0528060:CDS | 40.0% |
| ! | TCAGTGAAAGACACGCTTTT+TGG | + | chr4_1:733163-733182 | None:intergenic | 40.0% |
| ! | AAAAGCGTGTCTTTCACTGA+AGG | - | chr4_1:733163-733182 | Msa0528060:CDS | 40.0% |
| ! | CTAAGGTACTACGAGTAAGA+CGG | + | chr4_1:733477-733496 | None:intergenic | 40.0% |
| TTACTCGTAGTACCTTAGAC+AGG | - | chr4_1:733479-733498 | Msa0528060:intron | 40.0% | |
| ATGACATGTGCACATTCCTT+TGG | - | chr4_1:733697-733716 | Msa0528060:intron | 40.0% | |
| TACCAAGGCAAATTGGACAT+TGG | + | chr4_1:734070-734089 | None:intergenic | 40.0% | |
| CTCAACTATACCATCCAGAA+AGG | + | chr4_1:734106-734125 | None:intergenic | 40.0% | |
| ! | GACATGCTATTTGAATGACG+TGG | - | chr4_1:734681-734700 | Msa0528060:intron | 40.0% |
| AACAACAGGCAATCACACTA+TGG | + | chr4_1:734754-734773 | None:intergenic | 40.0% | |
| CATTGACAAATCAATGCGAC+TGG | - | chr4_1:734983-735002 | Msa0528060:intron | 40.0% | |
| TTGACAAATCAATGCGACTG+GGG | - | chr4_1:734985-735004 | Msa0528060:intron | 40.0% | |
| GTAGTTTGGATCATCTCTCA+AGG | + | chr4_1:735207-735226 | None:intergenic | 40.0% | |
| ATTAGGACAAAGTAGTGAGC+TGG | + | chr4_1:735292-735311 | None:intergenic | 40.0% | |
| GAAATTCAAGCTCCTGCAAT+GGG | + | chr4_1:735375-735394 | None:intergenic | 40.0% | |
| TCAAGGATCTGAAGAAAACG+AGG | - | chr4_1:735839-735858 | Msa0528060:intron | 40.0% | |
| TAGAAAGCTTACTTGGGGAA+GGG | - | chr4_1:736061-736080 | Msa0528060:intron | 40.0% | |
| AGTAACACAAGATATGGCAG+TGG | - | chr4_1:736095-736114 | Msa0528060:intron | 40.0% | |
| CTTGAATGAGAACACTGATG+AGG | - | chr4_1:736184-736203 | Msa0528060:intron | 40.0% | |
| TCATCTCATGTTCGTTTCTC+TGG | - | chr4_1:736344-736363 | Msa0528060:intron | 40.0% | |
| TGGACAAAGAAACTACACCA+AGG | - | chr4_1:736364-736383 | Msa0528060:intron | 40.0% | |
| AGGTTCTTGACAGACACATT+TGG | + | chr4_1:736417-736436 | None:intergenic | 40.0% | |
| ACGAGGATCTCACTTCATAA+AGG | + | chr4_1:736437-736456 | None:intergenic | 40.0% | |
| GAGTTGAACTTGATATCCAG+AGG | - | chr4_1:736508-736527 | Msa0528060:intron | 40.0% | |
| GTTGAGATACTGGCAGTTAA+AGG | - | chr4_1:736820-736839 | Msa0528060:intron | 40.0% | |
| ATGATAGCTCATCGAAATCC+AGG | + | chr4_1:736891-736910 | None:intergenic | 40.0% | |
| TTTCGATGAGCTATCATCGT+TGG | - | chr4_1:736894-736913 | Msa0528060:intron | 40.0% | |
| TTTGCAAGCTCATGAAACTG+TGG | - | chr4_1:736948-736967 | Msa0528060:intron | 40.0% | |
| TTCAGATTCTGGCATACAAG+AGG | - | chr4_1:737262-737281 | Msa0528060:CDS | 40.0% | |
| !! | TATTTATTGGTTTGGGTGGC+AGG | - | chr4_1:737301-737320 | Msa0528060:CDS | 40.0% |
| GAGAGAGAGAGAGAGATTGT+TGG | + | chr4_1:731606-731625 | None:intergenic | 45.0% | |
| !! | ATCTTCCATTGACTCGGGTA+AGG | + | chr4_1:731663-731682 | None:intergenic | 45.0% |
| CATCTTCCTCTTGTTCGAGT+TGG | + | chr4_1:731757-731776 | None:intergenic | 45.0% | |
| GACGAAGATGACGATGAAGA+AGG | - | chr4_1:731875-731894 | Msa0528060:intron | 45.0% | |
| GAGAGTAAGAGAGGTTACTC+AGG | + | chr4_1:732126-732145 | None:intergenic | 45.0% | |
| GCACTGTTAACCACAAGGAA+CGG | + | chr4_1:732997-733016 | None:intergenic | 45.0% | |
| CTATCAAATTGCAGCCATGG+TGG | + | chr4_1:733122-733141 | None:intergenic | 45.0% | |
| GTGCTATCAAATTGCAGCCA+TGG | + | chr4_1:733125-733144 | None:intergenic | 45.0% | |
| CTACTACTAGTCCCAAAGAC+TGG | - | chr4_1:733270-733289 | Msa0528060:CDS | 45.0% | |
| !!! | TAGGCATGCCTTTTAGGTTC+AGG | + | chr4_1:733415-733434 | None:intergenic | 45.0% |
| ! | GAACCTAAAAGGCATGCCTA+AGG | - | chr4_1:733415-733434 | Msa0528060:CDS | 45.0% |
| ! | ATGCCTTAGGCATGCCTTTT+AGG | + | chr4_1:733421-733440 | None:intergenic | 45.0% |
| CAGATTGACACACATGCCTT+AGG | + | chr4_1:733434-733453 | None:intergenic | 45.0% | |
| CGAGTAAGACGGCAATAGAA+GGG | + | chr4_1:733466-733485 | None:intergenic | 45.0% | |
| ACGAGTAAGACGGCAATAGA+AGG | + | chr4_1:733467-733486 | None:intergenic | 45.0% | |
| AGTACCTTAGACAGGCCTTT+AGG | - | chr4_1:733487-733506 | Msa0528060:intron | 45.0% | |
| TTTAGGTGCCTTTGGCTACA+CGG | - | chr4_1:733504-733523 | Msa0528060:intron | 45.0% | |
| ACAAAACACCGTGTAGCCAA+AGG | + | chr4_1:733515-733534 | None:intergenic | 45.0% | |
| GTCCAATGTCCAATTTGCCT+TGG | - | chr4_1:734065-734084 | Msa0528060:intron | 45.0% | |
| CAATGCATTCCCTGCAAAAG+CGG | + | chr4_1:734968-734987 | None:intergenic | 45.0% | |
| ACTTCAACTGCAACTGTCAG+CGG | + | chr4_1:735050-735069 | None:intergenic | 45.0% | |
| !! | GCAATAAGGGCATCGTAGTT+TGG | + | chr4_1:735221-735240 | None:intergenic | 45.0% |
| CGAAATTCAAGCTCCTGCAA+TGG | + | chr4_1:735376-735395 | None:intergenic | 45.0% | |
| GGAGCTTGAATTTCGTGAAG+AGG | - | chr4_1:735381-735400 | Msa0528060:intron | 45.0% | |
| GGAGAAGAACCGAAATAAGC+AGG | - | chr4_1:735402-735421 | Msa0528060:intron | 45.0% | |
| !! | GGTTTTGTCTCCTAGACTGA+AGG | + | chr4_1:735806-735825 | None:intergenic | 45.0% |
| CTTTCTATGCTTCCACCATC+AGG | + | chr4_1:735987-736006 | None:intergenic | 45.0% | |
| GAGAAAATCGAGGAGCTTCT+AGG | - | chr4_1:736024-736043 | Msa0528060:intron | 45.0% | |
| CTAGAAAGCTTACTTGGGGA+AGG | - | chr4_1:736060-736079 | Msa0528060:intron | 45.0% | |
| AGAAAGCTTACTTGGGGAAG+GGG | - | chr4_1:736062-736081 | Msa0528060:intron | 45.0% | |
| AACACAAGATATGGCAGTGG+TGG | - | chr4_1:736098-736117 | Msa0528060:intron | 45.0% | |
| ACCTAGACATTCGACCACTA+CGG | + | chr4_1:736145-736164 | None:intergenic | 45.0% | |
| TAGTGGTCGAATGTCTAGGT+TGG | - | chr4_1:736145-736164 | Msa0528060:intron | 45.0% | |
| CAAAGAAACTACACCAAGGC+TGG | - | chr4_1:736368-736387 | Msa0528060:intron | 45.0% | |
| TGAGGTCTAGCATAAGTGGT+TGG | + | chr4_1:736554-736573 | None:intergenic | 45.0% | |
| TTGTGACAAGACAGCTGATG+AGG | - | chr4_1:736858-736877 | Msa0528060:intron | 45.0% | |
| ACTTGTGTGTGTGTGTGTGT+GGG | + | chr4_1:737190-737209 | None:intergenic | 45.0% | |
| TACTTGTGTGTGTGTGTGTG+TGG | + | chr4_1:737191-737210 | None:intergenic | 45.0% | |
| GATTCTGGCATACAAGAGGA+AGG | - | chr4_1:737266-737285 | Msa0528060:CDS | 45.0% | |
| !! | TCGAGTTGGTCGATGAAGTG+TGG | + | chr4_1:731743-731762 | None:intergenic | 50.0% |
| CATCGACCAACTCGAACAAG+AGG | - | chr4_1:731748-731767 | Msa0528060:three_prime_UTR | 50.0% | |
| GATGAGGAAGAAGACGAGCA+AGG | - | chr4_1:731809-731828 | Msa0528060:three_prime_UTR | 50.0% | |
| AGACGAGCAAGGAGAAGAAG+AGG | - | chr4_1:731820-731839 | Msa0528060:three_prime_UTR | 50.0% | |
| GCAGCACCATGACGATGAAA+AGG | - | chr4_1:731898-731917 | Msa0528060:intron | 50.0% | |
| ACGATGGGACACTGCGATTT+AGG | + | chr4_1:732889-732908 | None:intergenic | 50.0% | |
| !! | TGGTTGGTAACCGTTCCTTG+TGG | - | chr4_1:732984-733003 | Msa0528060:CDS | 50.0% |
| ACTGGCATTGCAATCCACCA+TGG | - | chr4_1:733105-733124 | Msa0528060:CDS | 50.0% | |
| !! | GTGTAGCCAAAGGCACCTAA+AGG | + | chr4_1:733505-733524 | None:intergenic | 50.0% |
| !! | AATGCTTGCACCGCTTTTGC+AGG | - | chr4_1:734955-734974 | Msa0528060:intron | 50.0% |
| !! | ATGCTTGCACCGCTTTTGCA+GGG | - | chr4_1:734956-734975 | Msa0528060:intron | 50.0% |
| GATCATCTCTCAAGGAGCGA+CGG | + | chr4_1:735199-735218 | None:intergenic | 50.0% | |
| ATACCACTCTGTCCCATTGC+AGG | - | chr4_1:735360-735379 | Msa0528060:intron | 50.0% | |
| AGACTCATCTTCCGGTGATG+AGG | - | chr4_1:735881-735900 | Msa0528060:intron | 50.0% | |
| GACTCATCTTCCGGTGATGA+GGG | - | chr4_1:735882-735901 | Msa0528060:intron | 50.0% | |
| ACTCATCTTCCGGTGATGAG+GGG | - | chr4_1:735883-735902 | Msa0528060:intron | 50.0% | |
| GGACTTGCCATTGACGATGA+GGG | + | chr4_1:735966-735985 | None:intergenic | 50.0% | |
| AGGACTTGCCATTGACGATG+AGG | + | chr4_1:735967-735986 | None:intergenic | 50.0% | |
| TCGTCAATGGCAAGTCCTGA+TGG | - | chr4_1:735969-735988 | Msa0528060:intron | 50.0% | |
| TCAATGGCAAGTCCTGATGG+TGG | - | chr4_1:735972-735991 | Msa0528060:intron | 50.0% | |
| AAATCGAGGAGCTTCTAGGC+TGG | - | chr4_1:736028-736047 | Msa0528060:intron | 50.0% | |
| ACAAGATATGGCAGTGGTGG+TGG | - | chr4_1:736101-736120 | Msa0528060:intron | 50.0% | |
| CCTAGACATTCGACCACTAC+GGG | + | chr4_1:736144-736163 | None:intergenic | 50.0% | |
| AGATGAAGCTTCTCCAGCCT+TGG | + | chr4_1:736384-736403 | None:intergenic | 50.0% | |
| CAGTGTGTGTTGTCAACCTC+TGG | + | chr4_1:736527-736546 | None:intergenic | 50.0% | |
| CCACTGAGGTCTAGCATAAG+TGG | + | chr4_1:736558-736577 | None:intergenic | 50.0% | |
| CCACTTATGCTAGACCTCAG+TGG | - | chr4_1:736555-736574 | Msa0528060:intron | 50.0% | |
| AGCTGATGAGGATTCAGTCC+TGG | - | chr4_1:736870-736889 | Msa0528060:intron | 50.0% | |
| GTAGACACGTCTTCGATCAG+AGG | - | chr4_1:737138-737157 | Msa0528060:intron | 50.0% | |
| ! | GCATACAAGAGGAAGGTGTG+AGG | - | chr4_1:737273-737292 | Msa0528060:CDS | 50.0% |
| CTCGGGTAAGGAACGCTTCT+GGG | + | chr4_1:731651-731670 | None:intergenic | 55.0% | |
| ACTCGGGTAAGGAACGCTTC+TGG | + | chr4_1:731652-731671 | None:intergenic | 55.0% | |
| GCGTTCCTTACCCGAGTCAA+TGG | - | chr4_1:731655-731674 | Msa0528060:three_prime_UTR | 55.0% | |
| GTTCGCGGTGATGCTTGACA+TGG | + | chr4_1:731721-731740 | None:intergenic | 55.0% | |
| GGTCGATGAAGTGTGGTTCG+CGG | + | chr4_1:731736-731755 | None:intergenic | 55.0% | |
| !! | CTGCATGTTTGGATTGGCGG+TGG | + | chr4_1:732919-732938 | None:intergenic | 55.0% |
| GGCACCTAAAGGCCTGTCTA+AGG | + | chr4_1:733494-733513 | None:intergenic | 55.0% | |
| GACAGGCCTTTAGGTGCCTT+TGG | - | chr4_1:733496-733515 | Msa0528060:intron | 55.0% | |
| CACAATGTGTGCGGCAAGCA+GGG | + | chr4_1:735172-735191 | None:intergenic | 55.0% | |
| GACGGCTAGCACAATGTGTG+CGG | + | chr4_1:735181-735200 | None:intergenic | 55.0% | |
| CTCATCTTCCGGTGATGAGG+GGG | - | chr4_1:735884-735903 | Msa0528060:intron | 55.0% | |
| TCATCTTCCGGTGATGAGGG+GGG | - | chr4_1:735885-735904 | Msa0528060:intron | 55.0% | |
| TTCTGTACCCCCCTCATCAC+CGG | + | chr4_1:735895-735914 | None:intergenic | 55.0% | |
| CATTGACGATGAGGGCTGAG+AGG | + | chr4_1:735958-735977 | None:intergenic | 55.0% | |
| CTCTCAGCCCTCATCGTCAA+TGG | - | chr4_1:735956-735975 | Msa0528060:intron | 55.0% | |
| AAGCTTACTTGGGGAAGGGG+TGG | - | chr4_1:736065-736084 | Msa0528060:intron | 55.0% | |
| ! | CTTGGGGAAGGGGTGGTTTT+CGG | - | chr4_1:736072-736091 | Msa0528060:intron | 55.0% |
| AACGGCAAGAGTTCCCGTAG+TGG | - | chr4_1:736128-736147 | Msa0528060:intron | 55.0% | |
| CCCGTAGTGGTCGAATGTCT+AGG | - | chr4_1:736141-736160 | Msa0528060:intron | 55.0% | |
| GTGTGTGTGTGTGTGTGGGT+GGG | + | chr4_1:737186-737205 | None:intergenic | 55.0% | |
| TGTGTGTGTGTGTGTGTGGG+TGG | + | chr4_1:737187-737206 | None:intergenic | 55.0% | |
| GGTAAGGAACGCTTCTGGGC+TGG | + | chr4_1:731647-731666 | None:intergenic | 60.0% | |
| GGCGGTGGCAGAATCACGAT+GGG | + | chr4_1:732904-732923 | None:intergenic | 60.0% | |
| TGGCGGTGGCAGAATCACGA+TGG | + | chr4_1:732905-732924 | None:intergenic | 60.0% | |
| GGCGTGCGCCTGAACCTAAA+AGG | - | chr4_1:733404-733423 | Msa0528060:CDS | 60.0% | |
| GCACAATGTGTGCGGCAAGC+AGG | + | chr4_1:735173-735192 | None:intergenic | 60.0% | |
| GCTCCTGCAATGGGACAGAG+TGG | + | chr4_1:735366-735385 | None:intergenic | 60.0% | |
| !! | GGCAGTGGTGGTGGTAGCAA+CGG | - | chr4_1:736110-736129 | Msa0528060:intron | 60.0% |
| GTGTGTGTGTGTGGGTGGGT+GGG | + | chr4_1:737182-737201 | None:intergenic | 60.0% | |
| TGTGTGTGTGTGTGGGTGGG+TGG | + | chr4_1:737183-737202 | None:intergenic | 60.0% | |
| TGGGTGGCAGGCGTTTGAGA+TGG | - | chr4_1:737313-737332 | Msa0528060:CDS | 60.0% | |
| GGTTCAGGCGCACGCCTATC+TGG | + | chr4_1:733400-733419 | None:intergenic | 65.0% | |
| GGGCTGAGAGGAGCGAACTC+TGG | + | chr4_1:735946-735965 | None:intergenic | 65.0% | |
| TGTGTGTGGGTGGGTGGGTG+GGG | + | chr4_1:737177-737196 | None:intergenic | 65.0% | |
| GTGTGTGTGGGTGGGTGGGT+GGG | + | chr4_1:737178-737197 | None:intergenic | 65.0% | |
| TGTGTGTGTGGGTGGGTGGG+TGG | + | chr4_1:737179-737198 | None:intergenic | 65.0% | |
| TGTGTGGGTGGGTGGGTGGG+GGG | + | chr4_1:737175-737194 | None:intergenic | 70.0% | |
| GTGTGTGGGTGGGTGGGTGG+GGG | + | chr4_1:737176-737195 | None:intergenic | 70.0% | |
| TGGGTGGGTGGGTGGGGGGA+GGG | + | chr4_1:737171-737190 | None:intergenic | 75.0% | |
| ! | GTGGGTGGGTGGGTGGGGGG+AGG | + | chr4_1:737172-737191 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 731580 | 737553 | 731580 | ID=Msa0528060;Name=Msa0528060 |
| chr4_1 | mRNA | 731580 | 737553 | 731580 | ID=Msa0528060-mRNA-1;Parent=Msa0528060;Name=Msa0528060-mRNA-1;_AED=0.05;_eAED=0.05;_QI=61|1|1|1|1|1|10|260|504 |
| chr4_1 | exon | 731580 | 731866 | 731580 | ID=Msa0528060-mRNA-1:exon:194;Parent=Msa0528060-mRNA-1 |
| chr4_1 | exon | 732122 | 732349 | 732122 | ID=Msa0528060-mRNA-1:exon:193;Parent=Msa0528060-mRNA-1 |
| chr4_1 | exon | 732690 | 732797 | 732690 | ID=Msa0528060-mRNA-1:exon:192;Parent=Msa0528060-mRNA-1 |
| chr4_1 | exon | 732928 | 733446 | 732928 | ID=Msa0528060-mRNA-1:exon:191;Parent=Msa0528060-mRNA-1 |
| chr4_1 | exon | 733710 | 733751 | 733710 | ID=Msa0528060-mRNA-1:exon:190;Parent=Msa0528060-mRNA-1 |
| chr4_1 | exon | 733856 | 733976 | 733856 | ID=Msa0528060-mRNA-1:exon:189;Parent=Msa0528060-mRNA-1 |
| chr4_1 | exon | 734127 | 734208 | 734127 | ID=Msa0528060-mRNA-1:exon:188;Parent=Msa0528060-mRNA-1 |
| chr4_1 | exon | 735047 | 735105 | 735047 | ID=Msa0528060-mRNA-1:exon:187;Parent=Msa0528060-mRNA-1 |
| chr4_1 | exon | 737006 | 737042 | 737006 | ID=Msa0528060-mRNA-1:exon:186;Parent=Msa0528060-mRNA-1 |
| chr4_1 | exon | 737201 | 737553 | 737201 | ID=Msa0528060-mRNA-1:exon:185;Parent=Msa0528060-mRNA-1 |
| chr4_1 | five_prime_UTR | 737493 | 737553 | 737493 | ID=Msa0528060-mRNA-1:five_prime_utr;Parent=Msa0528060-mRNA-1 |
| chr4_1 | CDS | 737201 | 737492 | 737201 | ID=Msa0528060-mRNA-1:cds;Parent=Msa0528060-mRNA-1 |
| chr4_1 | CDS | 737006 | 737042 | 737006 | ID=Msa0528060-mRNA-1:cds;Parent=Msa0528060-mRNA-1 |
| chr4_1 | CDS | 735047 | 735105 | 735047 | ID=Msa0528060-mRNA-1:cds;Parent=Msa0528060-mRNA-1 |
| chr4_1 | CDS | 734127 | 734208 | 734127 | ID=Msa0528060-mRNA-1:cds;Parent=Msa0528060-mRNA-1 |
| chr4_1 | CDS | 733856 | 733976 | 733856 | ID=Msa0528060-mRNA-1:cds;Parent=Msa0528060-mRNA-1 |
| chr4_1 | CDS | 733710 | 733751 | 733710 | ID=Msa0528060-mRNA-1:cds;Parent=Msa0528060-mRNA-1 |
| chr4_1 | CDS | 732928 | 733446 | 732928 | ID=Msa0528060-mRNA-1:cds;Parent=Msa0528060-mRNA-1 |
| chr4_1 | CDS | 732690 | 732797 | 732690 | ID=Msa0528060-mRNA-1:cds;Parent=Msa0528060-mRNA-1 |
| chr4_1 | CDS | 732122 | 732349 | 732122 | ID=Msa0528060-mRNA-1:cds;Parent=Msa0528060-mRNA-1 |
| chr4_1 | CDS | 731840 | 731866 | 731840 | ID=Msa0528060-mRNA-1:cds;Parent=Msa0528060-mRNA-1 |
| chr4_1 | three_prime_UTR | 731580 | 731839 | 731580 | ID=Msa0528060-mRNA-1:three_prime_utr;Parent=Msa0528060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
