AlfalfaGEDB | Msa0263590

M. sativa cultivar zhongmu-4 / Msa0263590

KEGG: K09338
GO: GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263590	XP_003597252.2	97.616	839	14	1	1	833	1	839	0.0	1701

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263590	sp\|Q9SE43\|REV_ARATH	75.236	848	187	8	1	833	3	842	0.0	1313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263590	A0A396JCR0	97.616	839	14	1	1	833	1	839	0.0	1701

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TFs/TRs:

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Gene ID	Type	Classification
Msa0263590	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0263590	Msa0338740	0.930693	1.128939e-93	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0263590	MtrunA17_Chr2g0326731	97.616	839	14	1	1	833	1	839	1701
Msa0263590	MtrunA17_Chr4g0028991	79.339	847	158	8	1	833	3	846	1382
Msa0263590	MtrunA17_Chr2g0292391	63.690	840	279	10	13	833	4	836	1092
Msa0263590	MtrunA17_Chr2g0331131	61.916	835	286	11	21	833	12	836	1044
Msa0263590	MtrunA17_Chr3g0140351	61.602	849	293	13	3	833	2	835	1039
Msa0263590	MtrunA17_Chr8g0340411	59.595	839	304	12	16	833	8	832	1027

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263590	AT5G60690.1	75.236	848	187	8	1	833	3	842	0.0	1313
Msa0263590	AT2G34710.1	62.471	866	275	13	3	833	2	852	0.0	1072
Msa0263590	AT1G30490.1	62.560	836	277	12	21	833	19	841	0.0	1049
Msa0263590	AT1G52150.1	61.391	834	289	14	21	833	15	836	0.0	1028
Msa0263590	AT1G52150.2	61.271	834	291	14	21	833	15	837	0.0	1027
Msa0263590	AT4G32880.1	59.666	838	304	14	17	833	9	833	0.0	1004
Msa0263590	AT1G52150.3	61.062	791	265	14	21	785	15	788	0.0	958
Msa0263590	AT5G32670.1	64.286	70	25	0	289	358	37	106	2.60e-25	104
Msa0263590	AT5G52170.2	25.203	369	218	11	24	355	61	408	6.52e-15	79.3
Msa0263590	AT5G52170.3	25.203	369	218	11	24	355	61	408	8.53e-15	79.0

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Find 254 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGGGAATAAAGTCA+GGG	0.676082	2_2:-63128555	None:intergenic
AAATGAGAGGCTGCAGAAGC+AGG	0.455804	2_2:+63129765	Msa0263590:CDS
AACAACTCTAGTGGCTCTAC+AGG	0.497254	2_2:+63133302	Msa0263590:CDS
AACAGCAGCAAATCGAACCT+TGG	0.582279	2_2:+63132631	Msa0263590:CDS
AACCAAACCTTGATCTGCTT+AGG	0.671065	2_2:-63129536	None:intergenic
AACCTCGTAGACCTCATTCC+AGG	0.475028	2_2:-63132006	None:intergenic
AACTTCAAAATTACCCAGCA+GGG	0.589166	2_2:-63130082	None:intergenic
AAGAAGTACTTAAGTTAAAA+GGG	0.484220	2_2:+63128780	Msa0263590:five_prime_UTR
AAGACCAGATGTCAAATCCA+AGG	0.596011	2_2:-63132648	None:intergenic
AAGCACTTACACTAGCTCAA+TGG	0.536805	2_2:+63132906	Msa0263590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCATTAGAAACAAACAACA+AGG	+	chr2_2:63128442-63128461	Msa0263590:five_prime_UTR	30.0%
AGTACTTAAGTTAAAAGGGT+CGG	+	chr2_2:63128784-63128803	Msa0263590:five_prime_UTR	30.0%
CCCTAAAATAAAACCAAAAG+AGG	-	chr2_2:63129284-63129303	None:intergenic	30.0%
AATATAGTATGAGACATTGG+TGG	-	chr2_2:63130363-63130382	None:intergenic	30.0%
GTAATTAAAAAGGGGACATA+TGG	+	chr2_2:63130502-63130521	Msa0263590:intron	30.0%
GACTAATGTGATCAATACTA+TGG	+	chr2_2:63131354-63131373	Msa0263590:intron	30.0%
TTTAAACATCATTCTTGCAG+AGG	+	chr2_2:63131580-63131599	Msa0263590:intron	30.0%
TAGTTCTTCTAATCGTTACA+CGG	+	chr2_2:63131842-63131861	Msa0263590:intron	30.0%
ACATACAATTGAACATGAAG+AGG	+	chr2_2:63132059-63132078	Msa0263590:CDS	30.0%
ATCATAAAAAGACATGGTCA+AGG	-	chr2_2:63132109-63132128	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	63128426	63133929	63128426	ID=Msa0263590;Name=Msa0263590
chr2_2	mRNA	63128426	63133929	63128426	ID=Msa0263590-mRNA-1;Parent=Msa0263590;Name=Msa0263590-mRNA-1;_AED=0.10;_eAED=0.10;_QI=898\|0.89\|0.85\|1\|0.84\|0.75\|20\|257\|833
chr2_2	exon	63128426	63129249	63128426	ID=Msa0263590-mRNA-1:exon:19557;Parent=Msa0263590-mRNA-1
chr2_2	exon	63129270	63129570	63129270	ID=Msa0263590-mRNA-1:exon:19558;Parent=Msa0263590-mRNA-1
chr2_2	exon	63129678	63129837	63129678	ID=Msa0263590-mRNA-1:exon:19559;Parent=Msa0263590-mRNA-1
chr2_2	exon	63129999	63130090	63129999	ID=Msa0263590-mRNA-1:exon:19560;Parent=Msa0263590-mRNA-1
chr2_2	exon	63130181	63130271	63130181	ID=Msa0263590-mRNA-1:exon:19561;Parent=Msa0263590-mRNA-1
chr2_2	exon	63130406	63130501	63130406	ID=Msa0263590-mRNA-1:exon:19562;Parent=Msa0263590-mRNA-1
chr2_2	exon	63130610	63130723	63130610	ID=Msa0263590-mRNA-1:exon:19563;Parent=Msa0263590-mRNA-1
chr2_2	exon	63130801	63130884	63130801	ID=Msa0263590-mRNA-1:exon:19564;Parent=Msa0263590-mRNA-1
chr2_2	exon	63130974	63131129	63130974	ID=Msa0263590-mRNA-1:exon:19565;Parent=Msa0263590-mRNA-1
chr2_2	exon	63131221	63131295	63131221	ID=Msa0263590-mRNA-1:exon:19566;Parent=Msa0263590-mRNA-1
chr2_2	exon	63131388	63131494	63131388	ID=Msa0263590-mRNA-1:exon:19567;Parent=Msa0263590-mRNA-1
chr2_2	exon	63131600	63131783	63131600	ID=Msa0263590-mRNA-1:exon:19568;Parent=Msa0263590-mRNA-1
chr2_2	exon	63131892	63132080	63131892	ID=Msa0263590-mRNA-1:exon:19569;Parent=Msa0263590-mRNA-1
chr2_2	exon	63132214	63132288	63132214	ID=Msa0263590-mRNA-1:exon:19570;Parent=Msa0263590-mRNA-1
chr2_2	exon	63132385	63132519	63132385	ID=Msa0263590-mRNA-1:exon:19571;Parent=Msa0263590-mRNA-1
chr2_2	exon	63132614	63132814	63132614	ID=Msa0263590-mRNA-1:exon:19572;Parent=Msa0263590-mRNA-1
chr2_2	exon	63132833	63132945	63132833	ID=Msa0263590-mRNA-1:exon:19573;Parent=Msa0263590-mRNA-1
chr2_2	exon	63133039	63133144	63133039	ID=Msa0263590-mRNA-1:exon:19574;Parent=Msa0263590-mRNA-1
chr2_2	exon	63133252	63133401	63133252	ID=Msa0263590-mRNA-1:exon:19575;Parent=Msa0263590-mRNA-1
chr2_2	exon	63133526	63133929	63133526	ID=Msa0263590-mRNA-1:exon:19576;Parent=Msa0263590-mRNA-1
chr2_2	five_prime_UTR	63128426	63129249	63128426	ID=Msa0263590-mRNA-1:five_prime_utr;Parent=Msa0263590-mRNA-1
chr2_2	five_prime_UTR	63129270	63129343	63129270	ID=Msa0263590-mRNA-1:five_prime_utr;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63129344	63129570	63129344	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63129678	63129837	63129678	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63129999	63130090	63129999	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63130181	63130271	63130181	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63130406	63130501	63130406	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63130610	63130723	63130610	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63130801	63130884	63130801	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63130974	63131129	63130974	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63131221	63131295	63131221	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63131388	63131494	63131388	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63131600	63131783	63131600	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63131892	63132080	63131892	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63132214	63132288	63132214	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63132385	63132519	63132385	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63132614	63132814	63132614	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63132833	63132945	63132833	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63133039	63133144	63133039	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63133252	63133401	63133252	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	CDS	63133526	63133672	63133526	ID=Msa0263590-mRNA-1:cds;Parent=Msa0263590-mRNA-1
chr2_2	three_prime_UTR	63133673	63133929	63133673	ID=Msa0263590-mRNA-1:three_prime_utr;Parent=Msa0263590-mRNA-1

Gene Sequence

>Msa0263590

ATGGCTATGGCTGTTGCACAACAACAAAGAGATAACAGCATTGAGAGACACCTTGATTCGTCTGGCAAATATGTGCGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCTAAGCCTAGTTCATTGAGAAGGCAACAGCTGATTCGGGAGTGCCCGGTTTTGGCCAACATTGAGCCTAAGCAGATCAAGGTTTGGTTTCAGAATAGGAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTCAGCTTCAGAGTGTGAACAGGAAACTTTCTGCGATGAATAAGCTGTTGATGGAGGAAAATGAGAGGCTGCAGAAGCAGGTTTCACAGCTGGTGAATGAGAATGGGTTTATGCGCCAGCAATTACACATTACCCCAGCAGCTCCAAATGCTGACGGTAGTGGCGTTGATTCTGCGGCTGCTGCTCCTATGAATTCATTGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCGGAGGAGACATTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTGGCAACGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACTAAGATTGTGGAGATCTTAAAAGATCGCCCAACTTGGTATCGTGATTGTCGGAGTTCAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGAACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACGCTGGCTGCTGCTCGCGACTTCTGGACTCTAAGATACACTACAAATTTGGAAAACGGCAGTGTTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGTCCTAATGCTGCAGCTGCCTCACAGTTTGCGAGGGGTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTGCAGGCATGGAGTGTGCCAGAAGTGCTGCGGCCGCTCTATGAATCGTCGCAAATGGTAGCTCAGAGATTGACAATTGCGGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGTGAAGTGGTGTATAGCATGGGTCGGCAACCTGCAGTTCTTAGAACTTTTAGCCAACGGTTGAGCAGAGGTTTCAATGACGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTTCTGAACTGTGATGGTGCCGAGGGTGTTACTATTTCAGTGAATTCAATCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTTCACTCCTTGGAGGAATTGTCTGTGCAAAAGCTTCTATGTTACTCCAAAACACCACTCCTGCTGTTTTAGTTCGCTTTCTGAGGGAGCATCGCTCGGAGTGGGCTGATTTTAGTGTTGATGCCTTTTCTGCTGCATCACTCAAAGCTGGCTCCTATGGCTATCCTGGAATGAGGTCTACGAGGTTCACCGGCAATCAAGCAATCATGCCTCTTGGACATACAATTGAACATGAAGAGATGCTAGAAATTATCCGCCTTGAAGGTCTTGCTCAAGATGATTCTTTTGTTTCTAGGGATGTTCATCTCTTACAGTTATGTACTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCCGAGCTCATATTTGCTCCAATTGATGACATGTTCCCAGAAGATGCTCCCTTGGTGCCTTCTGGTTTCCGCATTGTCCTGTTGAATTCTCAACCAGGTGATACAAAGAACACAACAGCAGCAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAAGCCAGGCAACAGCTCATGCTAACGGAGATGCATCGTGTTCTAACAATCGATGTGCGTTGACTGTTGCCTTCCAGTTTCCTTTTGAGAGCGGTCTGCAGGATAATGTTGCAGCCATGGCACGTCAGTATGTCCGGCGTGCGGTTGCAACGGCTATATCTCCATCCAGCGTTAACACTTCTGGTGGAGCAAAACTCTCCCCTGGCACTCCAGAAGCACTTACACTAGCTCAATGGATCTGCCAGAGCTATAGTCATTATCTGGGGGCGCAACTGCTGAGATCTGATTCTCTTATTGGTGATATGCTACTGAAACATTTGTGGCATCATCCAGATGCTATTTTATGCTGCTCTTTGAAGCAAGTGCCCGTATTCATCTTTGCTAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTCTACAGGATATCACACTGGACAAAATATTTGATGAATCTGCACGCAAGAATTTGATTGCATATTTTGCGAAGTTAATGCAGCAGGGGTTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGGCGACATGCTTCATATGATCAAGCCGTCGCGTGGAAAGTGCATGCTGAAGACAACAGTGTTCATTGCTTGGCTTTCTCGTTCATTAATTGGTCATTTATATGA

Protein sequence

>Msa0263590

MAMAVAQQQRDNSIERHLDSSGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASQLQSVNRKLSAMNKLLMEENERLQKQVSQLVNENGFMRQQLHITPAAPNADGSGVDSAAAAPMNSLRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGGNGVAARACGLVSLEPTKIVEILKDRPTWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLAAARDFWTLRYTTNLENGSVVVCERSLSGSGAGPNAAAASQFARGEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSQMVAQRLTIAALRYIRQVAQETSGEVVYSMGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNTTPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYPGMRSTRFTGNQAIMPLGHTIEHEEMLEIIRLEGLAQDDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIVLLNSQPGDTKNTTAANRTLDLTSGLEVSQATAHANGDASCSNNRCALTVAFQFPFESGLQDNVAAMARQYVRRAVATAISPSSVNTSGGAKLSPGTPEALTLAQWICQSYSHYLGAQLLRSDSLIGDMLLKHLWHHPDAILCCSLKQVPVFIFANQAGLDMLETTLVALQDITLDKIFDESARKNLIAYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVHAEDNSVHCLAFSFINWSFI*