AlfalfaGEDB | Msa0338740

M. sativa cultivar zhongmu-4 / Msa0338740

KEGG: K09338
GO: GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338740	XP_003597252.2	97.497	839	15	1	1	833	1	839	0.0	1700

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338740	sp\|Q9SE43\|REV_ARATH	75.354	848	186	8	1	833	3	842	0.0	1316

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0338740	TF	HB-HD-ZIP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0263590	Msa0338740	0.930693	1.128939e-93	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0338740	MtrunA17_Chr2g0326731	97.497	839	15	1	1	833	1	839	1700
Msa0338740	MtrunA17_Chr4g0028991	79.339	847	158	8	1	833	3	846	1382
Msa0338740	MtrunA17_Chr2g0292391	63.452	840	281	9	13	833	4	836	1092
Msa0338740	MtrunA17_Chr2g0331131	61.916	835	286	11	21	833	12	836	1045
Msa0338740	MtrunA17_Chr3g0140351	61.602	849	293	13	3	833	2	835	1040
Msa0338740	MtrunA17_Chr8g0340411	59.714	839	303	12	16	833	8	832	1027

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338740	AT5G60690.1	75.354	848	186	8	1	833	3	842	0.0	1316
Msa0338740	AT2G34710.1	62.587	866	274	13	3	833	2	852	0.0	1073
Msa0338740	AT1G30490.1	62.515	835	279	11	21	833	19	841	0.0	1051
Msa0338740	AT1G52150.1	61.557	835	286	15	21	833	15	836	0.0	1031
Msa0338740	AT1G52150.2	61.437	835	288	15	21	833	15	837	0.0	1029
Msa0338740	AT4G32880.1	59.666	838	304	14	17	833	9	833	0.0	1005
Msa0338740	AT1G52150.3	61.237	792	262	15	21	785	15	788	0.0	960
Msa0338740	AT5G32670.1	64.286	70	25	0	289	358	37	106	2.60e-25	104
Msa0338740	AT5G52170.2	25.203	369	218	11	24	355	61	408	3.95e-15	80.1
Msa0338740	AT5G52170.3	25.203	369	218	11	24	355	61	408	5.17e-15	79.7

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 255 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGGGAATAAAGTCA+GGG	0.676082	2_4:-59202565	None:intergenic
AAATGAGAGGCTGCAGAAGC+AGG	0.455804	2_4:+59203768	Msa0338740:CDS
AACAACTCTAGTGGCTCTAC+AGG	0.497254	2_4:+59207309	Msa0338740:CDS
AACAGCAGCAAATCGAACCT+TGG	0.587017	2_4:+59206638	Msa0338740:CDS
AACCAAACCTTGATCTGCTT+AGG	0.671065	2_4:-59203539	None:intergenic
AACCGCTCTCAAAAGGAAAC+TGG	0.368266	2_4:-59206755	None:intergenic
AACCTCGTAGACCTCATTCC+AGG	0.475028	2_4:-59206013	None:intergenic
AACTTCAAAATTACCCAGCA+GGG	0.589166	2_4:-59204084	None:intergenic
AAGAAGTACTTAAGTTAAAA+GGG	0.484220	2_4:+59202790	Msa0338740:five_prime_UTR
AAGACCAGATGTCAAATCCA+AGG	0.596011	2_4:-59206655	None:intergenic

Showing 1 to 10 of 255 entries

Previous1 2 3 4 5…26Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTCATTAGAAACAAACAACA+AGG	+	chr2_4:59202449-59202468	Msa0338740:five_prime_UTR	30.0%
AGTACTTAAGTTAAAAGGGT+CGG	+	chr2_4:59202794-59202813	Msa0338740:five_prime_UTR	30.0%
CCCTAAAATAAAACCAAAAG+AGG	-	chr2_4:59203287-59203306	None:intergenic	30.0%
GTAATTAAAAAGGGGACATA+TGG	+	chr2_4:59204509-59204528	Msa0338740:intron	30.0%
GACTAATGTGATCAATACTA+TGG	+	chr2_4:59205361-59205380	Msa0338740:intron	30.0%
TTTAAACATCATTCTTGCAG+AGG	+	chr2_4:59205587-59205606	Msa0338740:intron	30.0%
TAGTTCTTCTAATCGTTACA+CGG	+	chr2_4:59205849-59205868	Msa0338740:intron	30.0%
ACATACAATTGAACATGAAG+AGG	+	chr2_4:59206066-59206085	Msa0338740:CDS	30.0%
ATCATAAAAAGACATGGTCA+AGG	-	chr2_4:59206116-59206135	None:intergenic	30.0%
TCTACCATCATAAAAAGACA+TGG	-	chr2_4:59206122-59206141	None:intergenic	30.0%

Showing 1 to 10 of 394 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	59202433	59207935	59202433	ID=Msa0338740;Name=Msa0338740
chr2_4	mRNA	59202433	59207935	59202433	ID=Msa0338740-mRNA-1;Parent=Msa0338740;Name=Msa0338740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=914\|0.88\|0.84\|1\|0.88\|0.84\|19\|256\|833
chr2_4	exon	59202433	59203573	59202433	ID=Msa0338740-mRNA-1:exon:18387;Parent=Msa0338740-mRNA-1
chr2_4	exon	59203681	59203840	59203681	ID=Msa0338740-mRNA-1:exon:18388;Parent=Msa0338740-mRNA-1
chr2_4	exon	59204001	59204092	59204001	ID=Msa0338740-mRNA-1:exon:18389;Parent=Msa0338740-mRNA-1
chr2_4	exon	59204188	59204278	59204188	ID=Msa0338740-mRNA-1:exon:18390;Parent=Msa0338740-mRNA-1
chr2_4	exon	59204413	59204508	59204413	ID=Msa0338740-mRNA-1:exon:18391;Parent=Msa0338740-mRNA-1
chr2_4	exon	59204617	59204730	59204617	ID=Msa0338740-mRNA-1:exon:18392;Parent=Msa0338740-mRNA-1
chr2_4	exon	59204808	59204891	59204808	ID=Msa0338740-mRNA-1:exon:18393;Parent=Msa0338740-mRNA-1
chr2_4	exon	59204981	59205136	59204981	ID=Msa0338740-mRNA-1:exon:18394;Parent=Msa0338740-mRNA-1
chr2_4	exon	59205228	59205302	59205228	ID=Msa0338740-mRNA-1:exon:18395;Parent=Msa0338740-mRNA-1
chr2_4	exon	59205395	59205501	59205395	ID=Msa0338740-mRNA-1:exon:18396;Parent=Msa0338740-mRNA-1
chr2_4	exon	59205607	59205790	59205607	ID=Msa0338740-mRNA-1:exon:18397;Parent=Msa0338740-mRNA-1
chr2_4	exon	59205899	59206087	59205899	ID=Msa0338740-mRNA-1:exon:18398;Parent=Msa0338740-mRNA-1
chr2_4	exon	59206221	59206295	59206221	ID=Msa0338740-mRNA-1:exon:18399;Parent=Msa0338740-mRNA-1
chr2_4	exon	59206392	59206526	59206392	ID=Msa0338740-mRNA-1:exon:18400;Parent=Msa0338740-mRNA-1
chr2_4	exon	59206621	59206821	59206621	ID=Msa0338740-mRNA-1:exon:18401;Parent=Msa0338740-mRNA-1
chr2_4	exon	59206840	59206952	59206840	ID=Msa0338740-mRNA-1:exon:18402;Parent=Msa0338740-mRNA-1
chr2_4	exon	59207046	59207151	59207046	ID=Msa0338740-mRNA-1:exon:18403;Parent=Msa0338740-mRNA-1
chr2_4	exon	59207259	59207408	59207259	ID=Msa0338740-mRNA-1:exon:18404;Parent=Msa0338740-mRNA-1
chr2_4	exon	59207533	59207935	59207533	ID=Msa0338740-mRNA-1:exon:18405;Parent=Msa0338740-mRNA-1
chr2_4	five_prime_UTR	59202433	59203346	59202433	ID=Msa0338740-mRNA-1:five_prime_utr;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59203347	59203573	59203347	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59203681	59203840	59203681	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59204001	59204092	59204001	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59204188	59204278	59204188	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59204413	59204508	59204413	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59204617	59204730	59204617	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59204808	59204891	59204808	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59204981	59205136	59204981	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59205228	59205302	59205228	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59205395	59205501	59205395	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59205607	59205790	59205607	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59205899	59206087	59205899	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59206221	59206295	59206221	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59206392	59206526	59206392	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59206621	59206821	59206621	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59206840	59206952	59206840	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59207046	59207151	59207046	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59207259	59207408	59207259	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	CDS	59207533	59207679	59207533	ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4	three_prime_UTR	59207680	59207935	59207680	ID=Msa0338740-mRNA-1:three_prime_utr;Parent=Msa0338740-mRNA-1

Gene Sequence

>Msa0338740

ATGGCTATGGCTGTTGCACAACAACAAAGAGATAACAGCATTGAGAGACACCTTGATTCGTCTGGCAAATATGTGCGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCTAAGCCTAGTTCATTGAGAAGGCAACAGCTGATTCGGGAGTGCCCGGTTTTGGCCAACATTGAGCCTAAGCAGATCAAGGTTTGGTTTCAGAATAGGAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTCAGCTTCAGAGTGTGAACAGGAAACTTTCTGCGATGAATAAGCTGTTGATGGAGGAAAATGAGAGGCTGCAGAAGCAGGTTTCACAGCTGGTGAATGAGAATGGGTTTATGCGCCAGCAATTACACACTACCCCAGCAGCTCCAAATGCTGACGGTAGTGGCGTTGATTCTGCGGCTGCTGCTCCTATGAATTCATTGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCGGAGGAGACATTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTGGCAACGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACTAAGATTGTGGAGATCTTAAAAGATCGCCCAACTTGGTATCGTGATTGTCGGAGTTCAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGAACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACGCTGGCTGCTGCTCGCGACTTCTGGACTCTAAGATACACTACAAATTTGGAAAACGGCAGTGTTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGTCCTAATGCTGCAGCTGCCTCACAGTTTGCGAGGGGTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTGCAGGCATGGAGTGTGCCAGAAGTGCTGCGGCCGCTCTATGAATCGTCGCAAATGGTAGCTCAGAGATTGACAATTGCGGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGTGAAGTGGTGTATAGCATGGGTCGGCAACCTGCAGTTCTTAGAACTTTTAGCCAACGGTTGAGCAGAGGTTTCAATGACGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTTCTGAACTGTGATGGTGCCGAGGGTGTTACTATTTCAGTGAATTCAATCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTTCACTCCTTGGAGGAATTGTCTGTGCAAAAGCTTCTATGTTACTCCAAAACACCACTCCTGCTGTTTTAGTTCGCTTTCTGAGGGAGCATCGCTCGGAGTGGGCTGATTTTAGTGTTGATGCCTTTTCTGCTGCATCACTCAAAGCTGGCTCCTATGGCTATCCTGGAATGAGGTCTACGAGGTTCACCGGCAATCAAGCAATCATGCCTCTTGGACATACAATTGAACATGAAGAGATGCTAGAAATTATCCGCCTTGAAGGTCTTGCTCAAGATGATTCTTTTGTTTCTAGGGATGTTCATCTCTTACAGTTATGTACTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCCGAGCTCATATTTGCTCCAATTGATGACATGTTCCCAGAAGATGCTCCCTTGGTGCCTTCTGGTTTCCGCATTGTCCTGTTGAATTCTCAACCAGGTGATACAAAGAACATAACAGCAGCAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAAGCCAGGCAACAGCTCATGCTAACGGAGATGCATCGTGTTCTAACAATCGATGTGCGTTGACTGTTGCCTTCCAGTTTCCTTTTGAGAGCGGTTTGCAGGATAATGTTGCAGCCATGGCACGTCAGTATGTCCGGCGTGCGGTTGCAACGGCTATATCTCCATCCAGCGTTAACACTTCTGGTGGAGCAAAACTCTCCCCTGGCACTCCAGAAGCACTTACACTAGCTCAATGGATCTGCCAGAGCTATAGTCATTATCTGGGGGCGCAACTGCTGAGATCTGATTCTCTTATTGGTGATATGCTACTGAAACATTTGTGGCATCATCCAGATGCTATTTTATGCTGCTCTTTGAAGCAAGTGCCCGTATTCATCTTTGCTAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTCTACAGGATATCACACTGGACAAAATATTTGATGAATCTGCACGCAAGAATTTGATTGCATATTTTGCGAAGTTAATGCAGCAGGGGTTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGGCGACATGCTTCATATGATCAAGCCGTCGCGTGGAAAGTGCATGCTGAAGACAACAGTGTTCATTGCTTGGCTTTCTCGTTCATTAATTGGTCATTTATATGA

Protein sequence

>Msa0338740

MAMAVAQQQRDNSIERHLDSSGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASQLQSVNRKLSAMNKLLMEENERLQKQVSQLVNENGFMRQQLHTTPAAPNADGSGVDSAAAAPMNSLRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGGNGVAARACGLVSLEPTKIVEILKDRPTWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLAAARDFWTLRYTTNLENGSVVVCERSLSGSGAGPNAAAASQFARGEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSQMVAQRLTIAALRYIRQVAQETSGEVVYSMGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNTTPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYPGMRSTRFTGNQAIMPLGHTIEHEEMLEIIRLEGLAQDDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIVLLNSQPGDTKNITAANRTLDLTSGLEVSQATAHANGDASCSNNRCALTVAFQFPFESGLQDNVAAMARQYVRRAVATAISPSSVNTSGGAKLSPGTPEALTLAQWICQSYSHYLGAQLLRSDSLIGDMLLKHLWHHPDAILCCSLKQVPVFIFANQAGLDMLETTLVALQDITLDKIFDESARKNLIAYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVHAEDNSVHCLAFSFINWSFI*