AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0338740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0338740 MtrunA17_Chr2g0326731 97.497 839 15 1 1 833 1 839 0.0 1700
Msa0338740 MtrunA17_Chr4g0028991 79.339 847 158 8 1 833 3 846 0.0 1382
Msa0338740 MtrunA17_Chr2g0292391 63.452 840 281 9 13 833 4 836 0.0 1092
Msa0338740 MtrunA17_Chr2g0331131 61.916 835 286 11 21 833 12 836 0.0 1045
Msa0338740 MtrunA17_Chr3g0140351 61.602 849 293 13 3 833 2 835 0.0 1040
Msa0338740 MtrunA17_Chr8g0340411 59.714 839 303 12 16 833 8 832 0.0 1027
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0338740 AT5G60690.1 75.354 848 186 8 1 833 3 842 0.0 1316
Msa0338740 AT2G34710.1 62.587 866 274 13 3 833 2 852 0.0 1073
Msa0338740 AT1G30490.1 62.515 835 279 11 21 833 19 841 0.0 1051
Msa0338740 AT1G52150.1 61.557 835 286 15 21 833 15 836 0.0 1031
Msa0338740 AT1G52150.2 61.437 835 288 15 21 833 15 837 0.0 1029
Msa0338740 AT4G32880.1 59.666 838 304 14 17 833 9 833 0.0 1005
Msa0338740 AT1G52150.3 61.237 792 262 15 21 785 15 788 0.0 960
Msa0338740 AT5G32670.1 64.286 70 25 0 289 358 37 106 2.60e-25 104
Msa0338740 AT5G52170.2 25.203 369 218 11 24 355 61 408 3.95e-15 80.1
Msa0338740 AT5G52170.3 25.203 369 218 11 24 355 61 408 5.17e-15 79.7
Msa0338740 AT5G52170.1 25.203 369 218 11 24 355 61 408 5.17e-15 79.7
Msa0338740 AT4G04890.2 41.176 85 43 2 23 104 65 145 3.72e-11 67.4
Msa0338740 AT4G04890.1 41.176 85 43 2 23 104 65 145 3.72e-11 67.4

Find 255 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATAAACACAAACCTTATT+TGG 0.057726 2_4:+59203198 Msa0338740:five_prime_UTR
CTGAGATCTGATTCTCTTAT+TGG 0.129142 2_4:+59207068 Msa0338740:CDS
GAAGAAGTACTTAAGTTAAA+AGG 0.178801 2_4:+59202789 Msa0338740:five_prime_UTR
TGGCTTTCTCGTTCATTAAT+TGG 0.181977 2_4:+59207645 Msa0338740:CDS
TGGCTGCTGCTCGCGACTTC+TGG 0.215757 2_4:+59204827 Msa0338740:CDS
GTCTGAAAGCAGTCATTATC+TGG 0.224488 2_4:+59207034 Msa0338740:intron
TAGGGATGTTCATCTCTTAC+AGG 0.241280 2_4:+59206274 Msa0338740:CDS
TTTACAAGATCAAATCATTT+TGG 0.241363 2_4:-59207861 None:intergenic
TCTAAGATACACTACAAATT+TGG 0.241855 2_4:+59204852 Msa0338740:CDS
GGCACCAAGGGAGCATCTTC+TGG 0.244403 2_4:-59206467 None:intergenic
TGAGCTAGTGTAAGTGCTTC+TGG 0.266525 2_4:-59206909 None:intergenic
AAGTACTTCTTCTTCCTCTA+TGG 0.275363 2_4:-59202778 None:intergenic
GATGCTCCCTTGGTGCCTTC+TGG 0.276911 2_4:+59206473 Msa0338740:CDS
CACTCTTGAGACCCCAAATA+AGG 0.277810 2_4:-59203211 None:intergenic
TATAAACACAAACCTTATTT+GGG 0.278015 2_4:+59203199 Msa0338740:five_prime_UTR
TAGAGCGGCCGCAGCACTTC+TGG 0.282965 2_4:-59205240 None:intergenic
GATTCGGGAGTGCCCGGTTT+TGG 0.283665 2_4:+59203505 Msa0338740:CDS
TGCAGGCACTTCGCTATATC+AGG 0.289145 2_4:+59205390 Msa0338740:intron
GTTTCACTAGTTGGAACTAT+TGG 0.292623 2_4:+59203077 Msa0338740:five_prime_UTR
TTGTGTTGTGTTGCCTCTTT+TGG 0.316931 2_4:+59203271 Msa0338740:five_prime_UTR
GCAAGTTCCCTTTCACTCCT+TGG 0.320702 2_4:+59205731 Msa0338740:CDS
CCGTCAGCATTTGGAGCTGC+TGG 0.331315 2_4:-59204004 None:intergenic
GGCTCAATGTTGGCCAAAAC+CGG 0.331817 2_4:-59203518 None:intergenic
GTCGATTGGGTCCAGATGCC+TGG 0.336793 2_4:+59204249 Msa0338740:CDS
TGAGAAGGCAACAGCTGATT+CGG 0.337430 2_4:+59203489 Msa0338740:CDS
TGCTGAACAGATTGAAGCTT+TGG 0.342547 2_4:+59203430 Msa0338740:CDS
GAACTCAGACCTGCAGGTTT+AGG 0.343156 2_4:-59205124 None:intergenic
GAAAGGTCACTGTCTGGTTC+TGG 0.344827 2_4:+59204987 Msa0338740:CDS
CGTTAGCATGAGCTGTTGCC+TGG 0.351416 2_4:-59206686 None:intergenic
CCATCCAGCGTTAACACTTC+TGG 0.355722 2_4:+59206861 Msa0338740:CDS
GCACATTACAAGATCATGTT+TGG 0.359217 2_4:+59207797 Msa0338740:three_prime_UTR
CTACCTTCATCCCAGGCATC+TGG 0.361257 2_4:-59204260 None:intergenic
TCAAGGTTTGGTTTCAGAAT+AGG 0.367043 2_4:+59203549 Msa0338740:CDS
AACCGCTCTCAAAAGGAAAC+TGG 0.368266 2_4:-59206755 None:intergenic
GGATTTCATGTTTCACTAGT+TGG 0.370698 2_4:+59203068 Msa0338740:five_prime_UTR
GGGTTTGCTTGTATGCCAGC+TGG 0.372830 2_4:+59207533 Msa0338740:CDS
GCAAATATCCCAACCGAATC+CGG 0.374500 2_4:-59204419 None:intergenic
CTAGAAATTATCCGCCTTGA+AGG 0.374957 2_4:+59206224 Msa0338740:CDS
CGAACCTTGGATTTGACATC+TGG 0.378202 2_4:+59206651 Msa0338740:CDS
TCACTGTCTGGTTCTGGTGC+TGG 0.384059 2_4:+59204993 Msa0338740:CDS
CGAGCAGCAGCCAGCGTCAT+TGG 0.385288 2_4:-59204817 None:intergenic
TGTGAGGCAGCTGCAGCATT+AGG 0.386159 2_4:-59205017 None:intergenic
CTTCTCAATGAACTAGGCTT+AGG 0.391335 2_4:-59203473 None:intergenic
TGCGATGAATAAGCTGTTGA+TGG 0.394036 2_4:+59203741 Msa0338740:CDS
TCACTCAAAGCTGGCTCCTA+TGG 0.398623 2_4:+59205986 Msa0338740:CDS
GGCTTACAGTGTGTAATTGC+TGG 0.398924 2_4:-59203825 None:intergenic
TTGTTAGCCTGGTCCGGATT+CGG 0.407612 2_4:+59204406 Msa0338740:intron
ACAATGTTCCCAGCTGGAAA+TGG 0.408347 2_4:+59204680 Msa0338740:CDS
ATGTCTCCTCCGCAATTGAT+AGG 0.410911 2_4:-59204191 None:intergenic
TCATTTATATGACCTATTGC+AGG 0.413124 2_4:+59207668 Msa0338740:exon
CGCTGTGCAGGCGGTTGCAA+CGG 0.418938 2_4:+59206830 Msa0338740:intron
CATTGTTTGTTAGCCTGGTC+CGG 0.420545 2_4:+59204400 Msa0338740:intron
GCTGGCTCCTATGGCTATCC+TGG 0.420819 2_4:+59205995 Msa0338740:CDS
TCACAGCTGGTGAATGAGAA+TGG 0.421055 2_4:+59203793 Msa0338740:CDS
TCCGTTGCCACCTTGAGAAA+TGG 0.423146 2_4:-59204441 None:intergenic
ACGCCACTACCGTCAGCATT+TGG 0.423791 2_4:-59204013 None:intergenic
AATGGATCTGCCAGAGCTAT+AGG 0.426936 2_4:+59206931 Msa0338740:CDS
CGTCAGCATTTGGAGCTGCT+GGG 0.428553 2_4:-59204003 None:intergenic
CTCAGCTTCAGAGTGTGAAC+AGG 0.430488 2_4:+59203710 Msa0338740:CDS
GCATCTCTCAATGAATTCAT+AGG 0.433129 2_4:-59204055 None:intergenic
CACAGCTGGTGAATGAGAAT+GGG 0.435607 2_4:+59203794 Msa0338740:CDS
GAGAAGGCAACAGCTGATTC+GGG 0.436593 2_4:+59203490 Msa0338740:CDS
TCTGGGAACATGTCATCAAT+TGG 0.437275 2_4:-59206449 None:intergenic
TTCTTGAACAAGCTTAGCTT+AGG 0.438858 2_4:+59202658 Msa0338740:five_prime_UTR
TACAGGAACTGCTGTCGATT+GGG 0.439880 2_4:+59204236 Msa0338740:CDS
GTAAGTGCTTCTGGAGTGCC+AGG 0.441398 2_4:-59206900 None:intergenic
AGCCTAAGCAGATCAAGGTT+TGG 0.446562 2_4:+59203537 Msa0338740:CDS
CTAAAAGTTCTAAGAACTGC+AGG 0.446795 2_4:-59205464 None:intergenic
TCATTTGAACAGTTATGTAC+TGG 0.447517 2_4:+59206380 Msa0338740:intron
GGGATCTGCATGTCAACAAT+GGG 0.449516 2_4:+59207554 Msa0338740:CDS
AGACAACAGTGTTCATTGCT+TGG 0.451078 2_4:+59207625 Msa0338740:CDS
GAGCAGCATAAAATAGCATC+TGG 0.451862 2_4:-59207122 None:intergenic
AGGCATGATTGCTTGATTGC+CGG 0.454592 2_4:-59206038 None:intergenic
AGCTTTGGAAAAGGTTTATG+TGG 0.455518 2_4:+59203445 Msa0338740:CDS
AAATGAGAGGCTGCAGAAGC+AGG 0.455804 2_4:+59203768 Msa0338740:CDS
AGCCTGGTCCGGATTCGGTT+GGG 0.455928 2_4:+59204411 Msa0338740:intron
TTCTTCCTCTATGGAGCTTG+AGG 0.456568 2_4:-59202769 None:intergenic
TAGAATTTAATAAAATGAAG+TGG 0.456677 2_4:+59207897 Msa0338740:three_prime_UTR
GCACCAAGGGAGCATCTTCT+GGG 0.456872 2_4:-59206466 None:intergenic
GGTTTCAATGACGCTGTCAA+TGG 0.456971 2_4:+59205608 Msa0338740:CDS
TCCTGCAAACCGCTCTCAAA+AGG 0.457002 2_4:-59206762 None:intergenic
GGGGATTTAAATCCTGCAAT+AGG 0.458859 2_4:-59207680 None:intergenic
TTTGAGTGATGCAGCAGAAA+AGG 0.462084 2_4:-59205972 None:intergenic
ACAGATTGAAGCTTTGGAAA+AGG 0.463288 2_4:+59203436 Msa0338740:CDS
CCATGGCACGTCAGTATGTC+CGG 0.463423 2_4:+59206796 Msa0338740:CDS
TACACTACAAATTTGGAAAA+CGG 0.463495 2_4:+59204859 Msa0338740:CDS
TGTTAGTTTAGAACCTACTA+AGG 0.469404 2_4:+59204487 Msa0338740:CDS
AACCTCGTAGACCTCATTCC+AGG 0.475028 2_4:-59206013 None:intergenic
GAAACAGTGGGAATAAAGTC+AGG 0.476275 2_4:-59202566 None:intergenic
TTCATCTTTGCTAACCAGGC+TGG 0.476545 2_4:+59207271 Msa0338740:CDS
GGGATATTTGCCATTTCTCA+AGG 0.476954 2_4:+59204431 Msa0338740:CDS
CTGGTTAGCAAAGATGAATA+CGG 0.477103 2_4:-59207266 None:intergenic
AGCTGCCTCACAGTTTGCGA+GGG 0.478943 2_4:+59205028 Msa0338740:CDS
ACAGCTGATTCGGGAGTGCC+CGG 0.479031 2_4:+59203499 Msa0338740:CDS
GGTCCAGATGCCTGGGATGA+AGG 0.479652 2_4:+59204257 Msa0338740:CDS
GAGGGAGCATCGCTCGGAGT+GGG 0.480911 2_4:+59205931 Msa0338740:CDS
GCTCTATGAATCGTCGCAAA+TGG 0.481115 2_4:+59205257 Msa0338740:CDS
CATCTTGAGCAAGACCTTCA+AGG 0.481464 2_4:-59206238 None:intergenic
CATATTTGCCAGACGAATCA+AGG 0.481482 2_4:-59203397 None:intergenic
ATTTGAGATTAGGAAGAAGA+TGG 0.482110 2_4:+59203328 Msa0338740:exon
CCCTAAAATAAAACCAAAAG+AGG 0.482490 2_4:-59203284 None:intergenic
AGGAGTGAAAGGGAACTTGC+TGG 0.482905 2_4:-59205728 None:intergenic
CAACTGGTTGAGAATTCAAC+AGG 0.483215 2_4:-59206508 None:intergenic
GTTTGTGAAAGGTCACTGTC+TGG 0.483493 2_4:+59204981 Msa0338740:CDS
CGTATTCATCTTTGCTAACC+AGG 0.483530 2_4:+59207267 Msa0338740:CDS
CAGCTGCCTCACAGTTTGCG+AGG 0.484030 2_4:+59205027 Msa0338740:CDS
AAGAAGTACTTAAGTTAAAA+GGG 0.484220 2_4:+59202790 Msa0338740:five_prime_UTR
TCTGCTGCATCACTCAAAGC+TGG 0.485761 2_4:+59205977 Msa0338740:CDS
TTCTCAATGAACTAGGCTTA+GGG 0.486895 2_4:-59203472 None:intergenic
TGTTGCCTTCTCAATGAACT+AGG 0.487411 2_4:-59203479 None:intergenic
ATTGTTCCTCCATTTCCAGC+TGG 0.487699 2_4:-59204689 None:intergenic
CAATTCCTCCAAGGAGTGAA+AGG 0.489942 2_4:-59205739 None:intergenic
TTGTTCCTCCATTTCCAGCT+GGG 0.490051 2_4:-59204688 None:intergenic
CTTTCTGAGGGAGCATCGCT+CGG 0.490804 2_4:+59205925 Msa0338740:CDS
GACAATCACGATACCAAGTT+GGG 0.492005 2_4:-59204640 None:intergenic
AGAATTTAATAAAATGAAGT+GGG 0.492246 2_4:+59207898 Msa0338740:three_prime_UTR
GCTCCAAATGCTGACGGTAG+TGG 0.492798 2_4:+59204010 Msa0338740:CDS
GGTTTGCTTGTATGCCAGCT+GGG 0.493869 2_4:+59207534 Msa0338740:CDS
GAGTTCCTTTCAAAGGCTAC+AGG 0.495421 2_4:+59204219 Msa0338740:CDS
AACAACTCTAGTGGCTCTAC+AGG 0.497254 2_4:+59207309 Msa0338740:CDS
AGAGATGCTAATAGCCCTGC+TGG 0.498973 2_4:+59204070 Msa0338740:CDS
TAGCCTGGTCCGGATTCGGT+TGG 0.499456 2_4:+59204410 Msa0338740:intron
CATTGAGCCTAAGCAGATCA+AGG 0.500320 2_4:+59203532 Msa0338740:CDS
CTACAGGAACTGCTGTCGAT+TGG 0.500801 2_4:+59204235 Msa0338740:CDS
GAGAGACACCTTGATTCGTC+TGG 0.501967 2_4:+59203389 Msa0338740:CDS
ATCTGGTCTTGAAGTAAGCC+AGG 0.503745 2_4:+59206668 Msa0338740:CDS
ATCCCAACCGAATCCGGACC+AGG 0.504673 2_4:-59204413 None:intergenic
GCAGGATAATGTTGCAGCCA+TGG 0.506426 2_4:+59206779 Msa0338740:CDS
GAACTTCAAAATTACCCAGC+AGG 0.508005 2_4:-59204085 None:intergenic
GCCATTTCTCAAGGTGGCAA+CGG 0.511290 2_4:+59204440 Msa0338740:CDS
TGGTCTGTTCTGAACTGTGA+TGG 0.511447 2_4:+59205647 Msa0338740:CDS
AGGAAGAAGAAAGAGAAAGA+TGG 0.512337 2_4:-59202749 None:intergenic
CACTTTGGAAGGTTTGTGAA+AGG 0.517480 2_4:+59204970 Msa0338740:intron
CCAGAAGTGTTAACGCTGGA+TGG 0.519643 2_4:-59206861 None:intergenic
GTTCCCAGAAGATGCTCCCT+TGG 0.524999 2_4:+59206463 Msa0338740:CDS
ATCAATTGCGGAGGAGACAT+TGG 0.525084 2_4:+59204194 Msa0338740:CDS
TCTGAAAGCAGTCATTATCT+GGG 0.529270 2_4:+59207035 Msa0338740:intron
CGACAATCACGATACCAAGT+TGG 0.529574 2_4:-59204641 None:intergenic
CAACTTGGTATCGTGATTGT+CGG 0.529939 2_4:+59204642 Msa0338740:CDS
GCAGAAGCAGGTTTCACAGC+TGG 0.531459 2_4:+59203780 Msa0338740:CDS
AGGTTTGGTTTCAGAATAGG+AGG 0.531854 2_4:+59203552 Msa0338740:CDS
TCTTGAACAAGCTTAGCTTA+GGG 0.532616 2_4:+59202659 Msa0338740:five_prime_UTR
GGTCGAATCAAGTAGCCACT+AGG 0.534816 2_4:-59205062 None:intergenic
TTCTAAACTAACAAGACCAC+AGG 0.536240 2_4:-59204477 None:intergenic
AATCAAGCAATCATGCCTCT+TGG 0.536445 2_4:+59206043 Msa0338740:CDS
AAGCACTTACACTAGCTCAA+TGG 0.536805 2_4:+59206913 Msa0338740:CDS
ATTGGCAGAGTTCCTTTCAA+AGG 0.541184 2_4:+59204212 Msa0338740:CDS
TTCTTCCTCAAGCTCCATAG+AGG 0.541627 2_4:+59202764 Msa0338740:five_prime_UTR
CCAGGCTGGCCTTGACATGT+TGG 0.541782 2_4:+59207285 Msa0338740:CDS
TCTTAAAAGATCGCCCAACT+TGG 0.542742 2_4:+59204627 Msa0338740:CDS
ATGAGGTCTACGAGGTTCAC+CGG 0.543253 2_4:+59206019 Msa0338740:CDS
GTTGACATGCAGATCCCAGC+TGG 0.543937 2_4:-59207548 None:intergenic
GTCAATGGATTCAATGATGA+TGG 0.544773 2_4:+59205623 Msa0338740:CDS
AGTTCCCTTTCACTCCTTGG+AGG 0.547829 2_4:+59205734 Msa0338740:CDS
GGTGGAGCAAAACTCTCCCC+TGG 0.550796 2_4:+59206882 Msa0338740:CDS
CGGAAACCAGAAGGCACCAA+GGG 0.551319 2_4:-59206479 None:intergenic
CAGTTCCTGTAGCCTTTGAA+AGG 0.551448 2_4:-59204224 None:intergenic
CTCAGACCTGCAGGTTTAGG+TGG 0.551972 2_4:-59205121 None:intergenic
CCAACATGTCAAGGCCAGCC+TGG 0.554158 2_4:-59207285 None:intergenic
GCACACTTTACCTATAGCTC+TGG 0.555699 2_4:-59206941 None:intergenic
TGGGATCTGCATGTCAACAA+TGG 0.558119 2_4:+59207553 Msa0338740:CDS
TCGATTGGGTCCAGATGCCT+GGG 0.561065 2_4:+59204250 Msa0338740:CDS
AGAAAGCGAACTAAAACAGC+AGG 0.564715 2_4:-59205908 None:intergenic
AATTCCTCCAAGGAGTGAAA+GGG 0.566854 2_4:-59205738 None:intergenic
TCTGAACTGTGATGGTGCCG+AGG 0.568521 2_4:+59205655 Msa0338740:CDS
TTGCAGATTCCTATCAATTG+CGG 0.571465 2_4:+59204182 Msa0338740:intron
AGTACTTAAGTTAAAAGGGT+CGG 0.571938 2_4:+59202794 Msa0338740:five_prime_UTR
CGACGTACCTGCTCAACCGT+TGG 0.573623 2_4:-59205487 None:intergenic
TCAAGAAACAAGTGGTGAAG+TGG 0.576595 2_4:+59205421 Msa0338740:CDS
GCTCAATGTTGGCCAAAACC+GGG 0.577313 2_4:-59203517 None:intergenic
TGAGGGAGCATCGCTCGGAG+TGG 0.578290 2_4:+59205930 Msa0338740:CDS
TGGTTAGCAAAGATGAATAC+GGG 0.580621 2_4:-59207265 None:intergenic
AATTCAATCAAGAATTTGAG+TGG 0.580677 2_4:+59205695 Msa0338740:CDS
CAGGCAACAGCTCATGCTAA+CGG 0.583410 2_4:+59206687 Msa0338740:CDS
GGAGTGGCAGCTCGAGCCTG+TGG 0.583765 2_4:+59204461 Msa0338740:CDS
GATCTGCTTAGGCTCAATGT+TGG 0.585016 2_4:-59203528 None:intergenic
ATGGATTCAATGATGATGGC+TGG 0.585896 2_4:+59205627 Msa0338740:CDS
ATTCGACCATGTGAAGGTGG+AGG 0.587006 2_4:+59205077 Msa0338740:CDS
AACAGCAGCAAATCGAACCT+TGG 0.587017 2_4:+59206638 Msa0338740:CDS
AACTTCAAAATTACCCAGCA+GGG 0.589166 2_4:-59204084 None:intergenic
TAGGGAGAAGCAGAGAAAAG+AGG 0.589529 2_4:+59203684 Msa0338740:CDS
GAGTTGTTTCCAACATGTCA+AGG 0.591719 2_4:-59207294 None:intergenic
GTGATCTGAGCTGAAACAGT+GGG 0.593949 2_4:-59202578 None:intergenic
TGTAGACCACCTAAACCTGC+AGG 0.594819 2_4:+59205115 Msa0338740:CDS
AGTGATCTGAGCTGAAACAG+TGG 0.595907 2_4:-59202579 None:intergenic
AAGACCAGATGTCAAATCCA+AGG 0.596011 2_4:-59206655 None:intergenic
GTCAGCATTTGGAGCTGCTG+GGG 0.596788 2_4:-59204002 None:intergenic
TGTTCAATTGTATGTCCAAG+AGG 0.596874 2_4:-59206058 None:intergenic
GCGAACTAAAACAGCAGGAG+TGG 0.597135 2_4:-59205903 None:intergenic
CATATGATCAAGCCGTCGCG+TGG 0.597983 2_4:+59207588 Msa0338740:CDS
CACTGAAATAGTAACACCCT+CGG 0.598397 2_4:-59205672 None:intergenic
TCCAGCGTTAACACTTCTGG+TGG 0.599839 2_4:+59206864 Msa0338740:CDS
CCGGACATACTGACGTGCCA+TGG 0.600199 2_4:-59206796 None:intergenic
CTAAGCCTAGTTCATTGAGA+AGG 0.603333 2_4:+59203474 Msa0338740:CDS
GATTAGGAAGAAGATGGCTA+TGG 0.605721 2_4:+59203334 Msa0338740:exon
CTGAACTGTGATGGTGCCGA+GGG 0.608315 2_4:+59205656 Msa0338740:CDS
AATTGAACTTGTTTACACAC+AGG 0.608400 2_4:+59204709 Msa0338740:CDS
GTCGAATCAAGTAGCCACTA+GGG 0.608609 2_4:-59205061 None:intergenic
TTGCACAGACAATTCCTCCA+AGG 0.608666 2_4:-59205748 None:intergenic
ATGTTCCCAGCTGGAAATGG+AGG 0.609193 2_4:+59204683 Msa0338740:CDS
GGAATTGATGAGAATGCTGT+GGG 0.610922 2_4:+59206401 Msa0338740:CDS
GCGGAAACCAGAAGGCACCA+AGG 0.611214 2_4:-59206480 None:intergenic
TGATTCTCTACCTTCATCCC+AGG 0.611915 2_4:-59204267 None:intergenic
AATTGGAGCAAATATGAGCT+CGG 0.611962 2_4:-59206432 None:intergenic
CCTATGGCTATCCTGGAATG+AGG 0.613041 2_4:+59206002 Msa0338740:CDS
ATATGCTACTGAAACATTTG+TGG 0.613265 2_4:+59207093 Msa0338740:CDS
CCTCATTCCAGGATAGCCAT+AGG 0.613471 2_4:-59206002 None:intergenic
TTTGGAAAACGGCAGTGTTG+TGG 0.614841 2_4:+59204870 Msa0338740:CDS
CAGATTCCTATCAATTGCGG+AGG 0.615563 2_4:+59204185 Msa0338740:intron
ATAAACACAAACCTTATTTG+GGG 0.620329 2_4:+59203200 Msa0338740:five_prime_UTR
TTGATTCGACCATGTGAAGG+TGG 0.621938 2_4:+59205074 Msa0338740:CDS
GAATTTAATAAAATGAAGTG+GGG 0.626018 2_4:+59207899 Msa0338740:three_prime_UTR
AGGACAATGCGGAAACCAGA+AGG 0.626123 2_4:-59206488 None:intergenic
ACATACAATTGAACATGAAG+AGG 0.627020 2_4:+59206066 Msa0338740:CDS
AAGTGGTGTATAGCATGGGT+CGG 0.629287 2_4:+59205438 Msa0338740:CDS
GACATATGCTCCAATGACGC+TGG 0.629499 2_4:+59204807 Msa0338740:intron
CTGAAAGCAGTCATTATCTG+GGG 0.631210 2_4:+59207036 Msa0338740:intron
TAAGTGCTTCTGGAGTGCCA+GGG 0.631518 2_4:-59206899 None:intergenic
AATTGATGAGAATGCTGTGG+GGG 0.634959 2_4:+59206403 Msa0338740:CDS
ATTGATCCTCCACCTTCACA+TGG 0.635822 2_4:-59205083 None:intergenic
TGGTGAAGTGGTGTATAGCA+TGG 0.636847 2_4:+59205433 Msa0338740:CDS
AAGTGCTTCTGGAGTGCCAG+GGG 0.637051 2_4:-59206898 None:intergenic
TTCTCAAGGTGGCAACGGAG+TGG 0.637931 2_4:+59204445 Msa0338740:CDS
GCTGCCTCACAGTTTGCGAG+GGG 0.640346 2_4:+59205029 Msa0338740:CDS
GGCTCTACAGGATATCACAC+TGG 0.641498 2_4:+59207321 Msa0338740:CDS
CGGTAGTGGCGTTGATTCTG+CGG 0.643778 2_4:+59204024 Msa0338740:CDS
CATGTTGGAAACAACTCTAG+TGG 0.653127 2_4:+59207300 Msa0338740:CDS
GCTCTCAAAAGGAAACTGGA+AGG 0.655094 2_4:-59206751 None:intergenic
GAGATGCTAATAGCCCTGCT+GGG 0.656369 2_4:+59204071 Msa0338740:CDS
TACTTGATTCGACCATGTGA+AGG 0.657308 2_4:+59205071 Msa0338740:CDS
TGGAATTGATGAGAATGCTG+TGG 0.658575 2_4:+59206400 Msa0338740:CDS
GGTGAAGTGGTGTATAGCAT+GGG 0.661299 2_4:+59205434 Msa0338740:CDS
ATATTTGCCATTTCTCAAGG+TGG 0.661399 2_4:+59204434 Msa0338740:CDS
CAAGTAGCTCAAGAAACAAG+TGG 0.662122 2_4:+59205413 Msa0338740:CDS
AGCATGCACTTTCCACGCGA+CGG 0.663627 2_4:-59207600 None:intergenic
AGCTCAGAGATTGACAATTG+CGG 0.667204 2_4:+59205281 Msa0338740:CDS
AGGGGTGAAATGCTCCCTAG+TGG 0.669242 2_4:+59205047 Msa0338740:CDS
AACCAAACCTTGATCTGCTT+AGG 0.671065 2_4:-59203539 None:intergenic
AAACAGTGGGAATAAAGTCA+GGG 0.676082 2_4:-59202565 None:intergenic
GGAGTGTGCCAGAAGTGCTG+CGG 0.679106 2_4:+59205232 Msa0338740:CDS
ATTCGTCTGGCAAATATGTG+CGG 0.682465 2_4:+59203402 Msa0338740:CDS
TCCACCAGAAGTGTTAACGC+TGG 0.686791 2_4:-59206865 None:intergenic
ATTTGCGACGATTCATAGAG+CGG 0.688818 2_4:-59205255 None:intergenic
TGAAAGCAGTCATTATCTGG+GGG 0.689197 2_4:+59207037 Msa0338740:intron
CCAGCAGCTCCAAATGCTGA+CGG 0.689268 2_4:+59204004 Msa0338740:CDS
GTCATTAGAAACAAACAACA+AGG 0.690599 2_4:+59202449 Msa0338740:five_prime_UTR
TTCACCCCTCGCAAACTGTG+AGG 0.692443 2_4:-59205033 None:intergenic
GAGAATTCAACAGGACAATG+CGG 0.705796 2_4:-59206499 None:intergenic
GATGAATAAGCTGTTGATGG+AGG 0.710323 2_4:+59203744 Msa0338740:CDS
ATCCTGGAATGAGGTCTACG+AGG 0.714524 2_4:+59206011 Msa0338740:CDS
GAATTGATGAGAATGCTGTG+GGG 0.719666 2_4:+59206402 Msa0338740:CDS
TGTTGATGGAGGAAAATGAG+AGG 0.721292 2_4:+59203755 Msa0338740:CDS
GGTTTAGGTGGTCTACAATG+TGG 0.731869 2_4:-59205109 None:intergenic
GGATCTGCATGTCAACAATG+GGG 0.742598 2_4:+59207555 Msa0338740:CDS
CTTGAGCAAGACCTTCAAGG+CGG 0.775739 2_4:-59206235 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTACGACTTTTTTTA+TGG + chr2_4:59202828-59202847 Msa0338740:five_prime_UTR 15.0%
!!! GTAAAAAAACAGTTTTTTTT+TGG - chr2_4:59202920-59202939 None:intergenic 15.0%
!! AAATTCAAAACAAAAACAAA+GGG - chr2_4:59203597-59203616 None:intergenic 15.0%
!!! TTCATTTTCATTCATTATTA+TGG + chr2_4:59203857-59203876 Msa0338740:intron 15.0%
!! GATTTAATATAATTTCACTT+TGG + chr2_4:59204955-59204974 Msa0338740:intron 15.0%
!! AAAGAAAATAAGAATATAGT+AGG - chr2_4:59205169-59205188 None:intergenic 15.0%
!! ACTAAATGTAAAATTATAGA+AGG - chr2_4:59205833-59205852 None:intergenic 15.0%
!! TAGAATTTAATAAAATGAAG+TGG + chr2_4:59207897-59207916 Msa0338740:three_prime_UTR 15.0%
!! AGAATTTAATAAAATGAAGT+GGG + chr2_4:59207898-59207917 Msa0338740:three_prime_UTR 15.0%
!!! AAGAAGTACTTAAGTTAAAA+GGG + chr2_4:59202790-59202809 Msa0338740:five_prime_UTR 20.0%
!!! TTTTTTTATGGCTTTTACAT+TGG + chr2_4:59202840-59202859 Msa0338740:five_prime_UTR 20.0%
!!! TTTTTTATGGCTTTTACATT+GGG + chr2_4:59202841-59202860 Msa0338740:five_prime_UTR 20.0%
!!! TTTTTTTGTCTCAAAAAAAC+CGG - chr2_4:59202973-59202992 None:intergenic 20.0%
!!! AAAAAAAGTAACGGTTTTTA+AGG + chr2_4:59203033-59203052 Msa0338740:five_prime_UTR 20.0%
!!! TATAAACACAAACCTTATTT+GGG + chr2_4:59203199-59203218 Msa0338740:five_prime_UTR 20.0%
!!! AAGGTTTTTAATTTGAGATT+AGG + chr2_4:59203318-59203337 Msa0338740:five_prime_UTR 20.0%
!! CAAATTCAAAACAAAAACAA+AGG - chr2_4:59203598-59203617 None:intergenic 20.0%
!! AATGAAAATGAACAATGATA+GGG - chr2_4:59203849-59203868 None:intergenic 20.0%
!! TAATTGTCATTGTTTGATTA+AGG + chr2_4:59203900-59203919 Msa0338740:intron 20.0%
!! GTAAATATAGTATGAGATAT+TGG - chr2_4:59204373-59204392 None:intergenic 20.0%
!! TGAAAAATTTCAATAGATTG+TGG + chr2_4:59204601-59204620 Msa0338740:intron 20.0%
!! GCTCAATAAATGATAAATAA+AGG - chr2_4:59204759-59204778 None:intergenic 20.0%
!! TAATATAATTTCACTTTGGA+AGG + chr2_4:59204959-59204978 Msa0338740:intron 20.0%
!!! CATGATTAATATTTTCTTCT+AGG + chr2_4:59205206-59205225 Msa0338740:intron 20.0%
!! TTTATGTACTTTCTATGATT+TGG + chr2_4:59206170-59206189 Msa0338740:intron 20.0%
!! AGTTACATTAAAATCTTTGA+AGG - chr2_4:59207215-59207234 None:intergenic 20.0%
!!! TGTTGTTTAAAACAAATTTG+AGG - chr2_4:59207459-59207478 None:intergenic 20.0%
!!! TTTACAAGATCAAATCATTT+TGG - chr2_4:59207864-59207883 None:intergenic 20.0%
!! GAATTTAATAAAATGAAGTG+GGG + chr2_4:59207899-59207918 Msa0338740:three_prime_UTR 20.0%
!!! AAATGAAGTTTTGAACTAGT+TGG - chr2_4:59202720-59202739 None:intergenic 25.0%
!!! GAAGAAGTACTTAAGTTAAA+AGG + chr2_4:59202789-59202808 Msa0338740:five_prime_UTR 25.0%
!!! TACGCGTTTTTCTTTTATTT+GGG - chr2_4:59202873-59202892 None:intergenic 25.0%
!! TTACGCGTTTTTCTTTTATT+TGG - chr2_4:59202874-59202893 None:intergenic 25.0%
!!! AAACAGTTTTTTTTTGGACT+TGG - chr2_4:59202914-59202933 None:intergenic 25.0%
! ATAAGACAGCAAAAAAATTC+CGG + chr2_4:59202951-59202970 Msa0338740:five_prime_UTR 25.0%
!!! TTACTTTTTTTTTCCTCTTC+TGG - chr2_4:59203024-59203043 None:intergenic 25.0%
! GAAGAGGAAAAAAAAAGTAA+CGG + chr2_4:59203024-59203043 Msa0338740:five_prime_UTR 25.0%
!!! TTTTTAAGGTTGTATGAACA+AGG + chr2_4:59203047-59203066 Msa0338740:five_prime_UTR 25.0%
! CTATAAACACAAACCTTATT+TGG + chr2_4:59203198-59203217 Msa0338740:five_prime_UTR 25.0%
!! ATAAACACAAACCTTATTTG+GGG + chr2_4:59203200-59203219 Msa0338740:five_prime_UTR 25.0%
!!! CCTCTTTTGGTTTTATTTTA+GGG + chr2_4:59203284-59203303 Msa0338740:five_prime_UTR 25.0%
!!! TTTAGTTGTGATTTGATTTG+TGG + chr2_4:59203642-59203661 Msa0338740:intron 25.0%
! GAATGAAAATGAACAATGAT+AGG - chr2_4:59203850-59203869 None:intergenic 25.0%
! ATATTGTGATGATTATGACA+TGG + chr2_4:59204330-59204349 Msa0338740:intron 25.0%
! AATATAGTATGAGATATTGG+TGG - chr2_4:59204370-59204389 None:intergenic 25.0%
! ACCTACTAAGGTAATTAAAA+AGG + chr2_4:59204499-59204518 Msa0338740:intron 25.0%
! CCTACTAAGGTAATTAAAAA+GGG + chr2_4:59204500-59204519 Msa0338740:intron 25.0%
! CTACTAAGGTAATTAAAAAG+GGG + chr2_4:59204501-59204520 Msa0338740:intron 25.0%
!! TCTAAGATACACTACAAATT+TGG + chr2_4:59204852-59204871 Msa0338740:CDS 25.0%
! TACACTACAAATTTGGAAAA+CGG + chr2_4:59204859-59204878 Msa0338740:CDS 25.0%
!! TTAATATTTTCTTCTAGGCA+TGG + chr2_4:59205211-59205230 Msa0338740:intron 25.0%
! GTATTATTAATTCACGATGT+AGG + chr2_4:59205317-59205336 Msa0338740:intron 25.0%
! AATTCAATCAAGAATTTGAG+TGG + chr2_4:59205695-59205714 Msa0338740:CDS 25.0%
!!! AAGATGATTCTTTTGTTTCT+AGG + chr2_4:59206255-59206274 Msa0338740:CDS 25.0%
!!! AGATGATTCTTTTGTTTCTA+GGG + chr2_4:59206256-59206275 Msa0338740:CDS 25.0%
!!! GTATTTGATTTTTCTCTAAC+CGG + chr2_4:59206545-59206564 Msa0338740:intron 25.0%
! TACTATGCTTCATATATGAA+CGG - chr2_4:59206573-59206592 None:intergenic 25.0%
!!! AATTGTTGCATGCATTTTTT+TGG + chr2_4:59207505-59207524 Msa0338740:intron 25.0%
!!! TGTTTTTGTATTCAACATGT+GGG - chr2_4:59207717-59207736 None:intergenic 25.0%
!!! TTGTTTTTGTATTCAACATG+TGG - chr2_4:59207718-59207737 None:intergenic 25.0%
! ACATGTTGAATACAAAAACA+AGG + chr2_4:59207717-59207736 Msa0338740:three_prime_UTR 25.0%
! CATGTTGAATACAAAAACAA+GGG + chr2_4:59207718-59207737 Msa0338740:three_prime_UTR 25.0%
!!! TTGGATTAGTTTTGTTACTT+TGG + chr2_4:59207830-59207849 Msa0338740:three_prime_UTR 25.0%
GTCATTAGAAACAAACAACA+AGG + chr2_4:59202449-59202468 Msa0338740:five_prime_UTR 30.0%
AGTACTTAAGTTAAAAGGGT+CGG + chr2_4:59202794-59202813 Msa0338740:five_prime_UTR 30.0%
!!! GCCTCTTTTGGTTTTATTTT+AGG + chr2_4:59203283-59203302 Msa0338740:five_prime_UTR 30.0%
CCCTAAAATAAAACCAAAAG+AGG - chr2_4:59203287-59203306 None:intergenic 30.0%
!!! TTTTAGGGTGTGATTGTTTA+AGG + chr2_4:59203299-59203318 Msa0338740:five_prime_UTR 30.0%
! ATTTGAGATTAGGAAGAAGA+TGG + chr2_4:59203328-59203347 Msa0338740:exon 30.0%
! TTGTGTTGTGTGAAAAGTTT+TGG + chr2_4:59203615-59203634 Msa0338740:intron 30.0%
! TGTGTTGTGTGAAAAGTTTT+GGG + chr2_4:59203616-59203635 Msa0338740:intron 30.0%
!!! GATTTGATTTGTGGCTTTTT+TGG + chr2_4:59203651-59203670 Msa0338740:intron 30.0%
! TGTTAGTTTAGAACCTACTA+AGG + chr2_4:59204487-59204506 Msa0338740:CDS 30.0%
!! CCCTTTTTAATTACCTTAGT+AGG - chr2_4:59204503-59204522 None:intergenic 30.0%
GTAATTAAAAAGGGGACATA+TGG + chr2_4:59204509-59204528 Msa0338740:intron 30.0%
! AATTGAACTTGTTTACACAC+AGG + chr2_4:59204709-59204728 Msa0338740:CDS 30.0%
GACTAATGTGATCAATACTA+TGG + chr2_4:59205361-59205380 Msa0338740:intron 30.0%
! TTCTTAGAACTTTTAGCCAA+CGG + chr2_4:59205471-59205490 Msa0338740:CDS 30.0%
TTTAAACATCATTCTTGCAG+AGG + chr2_4:59205587-59205606 Msa0338740:intron 30.0%
TAGTTCTTCTAATCGTTACA+CGG + chr2_4:59205849-59205868 Msa0338740:intron 30.0%
ACATACAATTGAACATGAAG+AGG + chr2_4:59206066-59206085 Msa0338740:CDS 30.0%
ATCATAAAAAGACATGGTCA+AGG - chr2_4:59206116-59206135 None:intergenic 30.0%
! TTGACCATGTCTTTTTATGA+TGG + chr2_4:59206115-59206134 Msa0338740:intron 30.0%
TCTACCATCATAAAAAGACA+TGG - chr2_4:59206122-59206141 None:intergenic 30.0%
!! ATTTGCTTTTGGCTAAGATT+TGG + chr2_4:59206147-59206166 Msa0338740:intron 30.0%
TTGTTTACCTGCATGTTTAT+TGG + chr2_4:59206321-59206340 Msa0338740:intron 30.0%
CAAAAAACCAATAAACATGC+AGG - chr2_4:59206331-59206350 None:intergenic 30.0%
! AACTGTTCAAATGATGATGA+TGG - chr2_4:59206374-59206393 None:intergenic 30.0%
TCATTTGAACAGTTATGTAC+TGG + chr2_4:59206380-59206399 Msa0338740:intron 30.0%
ATATGCTACTGAAACATTTG+TGG + chr2_4:59207093-59207112 Msa0338740:CDS 30.0%
! TATTTTATGCTGCTCTTTGA+AGG + chr2_4:59207130-59207149 Msa0338740:CDS 30.0%
! TATGTCCATGATCTCATTTT+AGG + chr2_4:59207153-59207172 Msa0338740:intron 30.0%
! ATGTCCATGATCTCATTTTA+GGG + chr2_4:59207154-59207173 Msa0338740:intron 30.0%
!!! TTTTAGGGTACAATTGAATC+TGG + chr2_4:59207169-59207188 Msa0338740:intron 30.0%
TCATTTATATGACCTATTGC+AGG + chr2_4:59207668-59207687 Msa0338740:exon 30.0%
ACATGTGGGAAAAAAAAAGT+GGG - chr2_4:59207703-59207722 None:intergenic 30.0%
AACATGTGGGAAAAAAAAAG+TGG - chr2_4:59207704-59207723 None:intergenic 30.0%
! AATCAGGATAGAATTTTGAG+AGG + chr2_4:59207744-59207763 Msa0338740:three_prime_UTR 30.0%
!! ATCAGGATAGAATTTTGAGA+GGG + chr2_4:59207745-59207764 Msa0338740:three_prime_UTR 30.0%
! CATGTTTGGATCATTTTCAT+TGG + chr2_4:59207811-59207830 Msa0338740:three_prime_UTR 30.0%
AAACAGTGGGAATAAAGTCA+GGG - chr2_4:59202568-59202587 None:intergenic 35.0%
TTCTTGAACAAGCTTAGCTT+AGG + chr2_4:59202658-59202677 Msa0338740:five_prime_UTR 35.0%
TCTTGAACAAGCTTAGCTTA+GGG + chr2_4:59202659-59202678 Msa0338740:five_prime_UTR 35.0%
AGGAAGAAGAAAGAGAAAGA+TGG - chr2_4:59202752-59202771 None:intergenic 35.0%
AAGTACTTCTTCTTCCTCTA+TGG - chr2_4:59202781-59202800 None:intergenic 35.0%
! AAAAAAACATTTGCTGCCAC+TGG + chr2_4:59202986-59203005 Msa0338740:five_prime_UTR 35.0%
!! GTTTTGTTGAAAACCAGAAG+AGG + chr2_4:59203008-59203027 Msa0338740:five_prime_UTR 35.0%
GGATTTCATGTTTCACTAGT+TGG + chr2_4:59203068-59203087 Msa0338740:five_prime_UTR 35.0%
GTTTCACTAGTTGGAACTAT+TGG + chr2_4:59203077-59203096 Msa0338740:five_prime_UTR 35.0%
!! ACAGATTGAAGCTTTGGAAA+AGG + chr2_4:59203436-59203455 Msa0338740:CDS 35.0%
!! AGCTTTGGAAAAGGTTTATG+TGG + chr2_4:59203445-59203464 Msa0338740:CDS 35.0%
TTCTCAATGAACTAGGCTTA+GGG - chr2_4:59203475-59203494 None:intergenic 35.0%
! TCAAGGTTTGGTTTCAGAAT+AGG + chr2_4:59203549-59203568 Msa0338740:CDS 35.0%
!!! TTTTTTGGTTTGCAGGTGTA+GGG + chr2_4:59203666-59203685 Msa0338740:intron 35.0%
GCATCTCTCAATGAATTCAT+AGG - chr2_4:59204058-59204077 None:intergenic 35.0%
AACTTCAAAATTACCCAGCA+GGG - chr2_4:59204087-59204106 None:intergenic 35.0%
TTGCAGATTCCTATCAATTG+CGG + chr2_4:59204182-59204201 Msa0338740:intron 35.0%
TTGTGATGATTATGACATGG+AGG + chr2_4:59204333-59204352 Msa0338740:intron 35.0%
TAGTATGAGATATTGGTGGA+AGG - chr2_4:59204366-59204385 None:intergenic 35.0%
! ATATTTGCCATTTCTCAAGG+TGG + chr2_4:59204434-59204453 Msa0338740:CDS 35.0%
TTCTAAACTAACAAGACCAC+AGG - chr2_4:59204480-59204499 None:intergenic 35.0%
TTAAAAAGGGGACATATGGA+TGG + chr2_4:59204513-59204532 Msa0338740:intron 35.0%
GTGAAGAATCAAACGTGAAT+AGG + chr2_4:59204731-59204750 Msa0338740:intron 35.0%
! AATGCATTGCTATTGTTGCA+TGG + chr2_4:59204911-59204930 Msa0338740:intron 35.0%
! ATGCATTGCTATTGTTGCAT+GGG + chr2_4:59204912-59204931 Msa0338740:intron 35.0%
! ATAGTAGGCATTCTAGCTAA+TGG - chr2_4:59205154-59205173 None:intergenic 35.0%
TAGGATTCTATTGCAAGCTT+TGG + chr2_4:59205336-59205355 Msa0338740:intron 35.0%
!! CTAAAAGTTCTAAGAACTGC+AGG - chr2_4:59205467-59205486 None:intergenic 35.0%
! GTCAATGGATTCAATGATGA+TGG + chr2_4:59205623-59205642 Msa0338740:CDS 35.0%
! AATGGATTTACGCACTTACT+TGG - chr2_4:59205790-59205809 None:intergenic 35.0%
AAGTAAGTGCGTAAATCCAT+TGG + chr2_4:59205789-59205808 Msa0338740:intron 35.0%
!!! TGTTTTAGTTCGCTTTCTGA+GGG + chr2_4:59205913-59205932 Msa0338740:CDS 35.0%
TGTTCAATTGTATGTCCAAG+AGG - chr2_4:59206061-59206080 None:intergenic 35.0%
! GGTAGATGCATATTTGCTTT+TGG + chr2_4:59206136-59206155 Msa0338740:intron 35.0%
AGGTAAACAAACCATAACAC+GGG - chr2_4:59206311-59206330 None:intergenic 35.0%
CAGGTAAACAAACCATAACA+CGG - chr2_4:59206312-59206331 None:intergenic 35.0%
AATTGGAGCAAATATGAGCT+CGG - chr2_4:59206435-59206454 None:intergenic 35.0%
TTGACGTCATATTGTGTTTC+AGG + chr2_4:59206599-59206618 Msa0338740:intron 35.0%
TGACGTCATATTGTGTTTCA+GGG + chr2_4:59206600-59206619 Msa0338740:intron 35.0%
GACAAGAGATATAGAAAGAG+AGG - chr2_4:59207017-59207036 None:intergenic 35.0%
TCTGAAAGCAGTCATTATCT+GGG + chr2_4:59207035-59207054 Msa0338740:intron 35.0%
CTGAGATCTGATTCTCTTAT+TGG + chr2_4:59207068-59207087 Msa0338740:CDS 35.0%
TGTACCCTAAAATGAGATCA+TGG - chr2_4:59207161-59207180 None:intergenic 35.0%
TGTAACTTCTCTATCCTGTT+TGG + chr2_4:59207228-59207247 Msa0338740:intron 35.0%
TGGTTAGCAAAGATGAATAC+GGG - chr2_4:59207268-59207287 None:intergenic 35.0%
CTGGTTAGCAAAGATGAATA+CGG - chr2_4:59207269-59207288 None:intergenic 35.0%
!!! TGCATGCATTTTTTTGGTTC+AGG + chr2_4:59207511-59207530 Msa0338740:intron 35.0%
!!! GCATGCATTTTTTTGGTTCA+GGG + chr2_4:59207512-59207531 Msa0338740:intron 35.0%
!!! CATGCATTTTTTTGGTTCAG+GGG + chr2_4:59207513-59207532 Msa0338740:intron 35.0%
TGGCTTTCTCGTTCATTAAT+TGG + chr2_4:59207645-59207664 Msa0338740:CDS 35.0%
CATGTGGGAAAAAAAAAGTG+GGG - chr2_4:59207702-59207721 None:intergenic 35.0%
! ACAAAAACAAGGGTACAATC+AGG + chr2_4:59207728-59207747 Msa0338740:three_prime_UTR 35.0%
GCACATTACAAGATCATGTT+TGG + chr2_4:59207797-59207816 Msa0338740:three_prime_UTR 35.0%
GAAACAGTGGGAATAAAGTC+AGG - chr2_4:59202569-59202588 None:intergenic 40.0%
!! CTGGTTTTCAACAAAACCAG+TGG - chr2_4:59203005-59203024 None:intergenic 40.0%
! TTGTGTTGTGTTGCCTCTTT+TGG + chr2_4:59203271-59203290 Msa0338740:five_prime_UTR 40.0%
GATTAGGAAGAAGATGGCTA+TGG + chr2_4:59203334-59203353 Msa0338740:exon 40.0%
CATATTTGCCAGACGAATCA+AGG - chr2_4:59203400-59203419 None:intergenic 40.0%
ATTCGTCTGGCAAATATGTG+CGG + chr2_4:59203402-59203421 Msa0338740:CDS 40.0%
TGCTGAACAGATTGAAGCTT+TGG + chr2_4:59203430-59203449 Msa0338740:CDS 40.0%
CTTCTCAATGAACTAGGCTT+AGG - chr2_4:59203476-59203495 None:intergenic 40.0%
CTAAGCCTAGTTCATTGAGA+AGG + chr2_4:59203474-59203493 Msa0338740:CDS 40.0%
TGTTGCCTTCTCAATGAACT+AGG - chr2_4:59203482-59203501 None:intergenic 40.0%
AACCAAACCTTGATCTGCTT+AGG - chr2_4:59203542-59203561 None:intergenic 40.0%
! AGGTTTGGTTTCAGAATAGG+AGG + chr2_4:59203552-59203571 Msa0338740:CDS 40.0%
!!! TTGTGGCTTTTTTGGTTTGC+AGG + chr2_4:59203659-59203678 Msa0338740:intron 40.0%
!!! CTTTTTTGGTTTGCAGGTGT+AGG + chr2_4:59203665-59203684 Msa0338740:intron 40.0%
TGCGATGAATAAGCTGTTGA+TGG + chr2_4:59203741-59203760 Msa0338740:CDS 40.0%
! GATGAATAAGCTGTTGATGG+AGG + chr2_4:59203744-59203763 Msa0338740:CDS 40.0%
! TGTTGATGGAGGAAAATGAG+AGG + chr2_4:59203755-59203774 Msa0338740:CDS 40.0%
GAACTTCAAAATTACCCAGC+AGG - chr2_4:59204088-59204107 None:intergenic 40.0%
ATTGGCAGAGTTCCTTTCAA+AGG + chr2_4:59204212-59204231 Msa0338740:CDS 40.0%
GTAGAGAATCATGCTTCTAG+TGG + chr2_4:59204279-59204298 Msa0338740:intron 40.0%
! TCATGCTTCTAGTGGACAAT+TGG + chr2_4:59204287-59204306 Msa0338740:intron 40.0%
! TCAACCATTGTTTGTTAGCC+TGG + chr2_4:59204395-59204414 Msa0338740:intron 40.0%
! GGGATATTTGCCATTTCTCA+AGG + chr2_4:59204431-59204450 Msa0338740:CDS 40.0%
TCTTAAAAGATCGCCCAACT+TGG + chr2_4:59204627-59204646 Msa0338740:CDS 40.0%
GACAATCACGATACCAAGTT+GGG - chr2_4:59204643-59204662 None:intergenic 40.0%
CAACTTGGTATCGTGATTGT+CGG + chr2_4:59204642-59204661 Msa0338740:CDS 40.0%
! CACTTTGGAAGGTTTGTGAA+AGG + chr2_4:59204970-59204989 Msa0338740:intron 40.0%
! TACTTGATTCGACCATGTGA+AGG + chr2_4:59205071-59205090 Msa0338740:CDS 40.0%
ATTTGCGACGATTCATAGAG+CGG - chr2_4:59205258-59205277 None:intergenic 40.0%
AGCTCAGAGATTGACAATTG+CGG + chr2_4:59205281-59205300 Msa0338740:CDS 40.0%
! CAATACTATGGCTTTTGTGC+AGG + chr2_4:59205373-59205392 Msa0338740:intron 40.0%
CAAGTAGCTCAAGAAACAAG+TGG + chr2_4:59205413-59205432 Msa0338740:CDS 40.0%
TCAAGAAACAAGTGGTGAAG+TGG + chr2_4:59205421-59205440 Msa0338740:CDS 40.0%
TGCAAAAAGCAGGCTGAAAT+AGG - chr2_4:59205538-59205557 None:intergenic 40.0%
CAGATCATTCTGCAAAAAGC+AGG - chr2_4:59205548-59205567 None:intergenic 40.0%
TGCAGAATGATCTGTTGTGT+TGG + chr2_4:59205554-59205573 Msa0338740:intron 40.0%
!! ATGGATTCAATGATGATGGC+TGG + chr2_4:59205627-59205646 Msa0338740:CDS 40.0%
CACTGAAATAGTAACACCCT+CGG - chr2_4:59205675-59205694 None:intergenic 40.0%
AATTCCTCCAAGGAGTGAAA+GGG - chr2_4:59205741-59205760 None:intergenic 40.0%
AGAAAGCGAACTAAAACAGC+AGG - chr2_4:59205911-59205930 None:intergenic 40.0%
!!! CTGTTTTAGTTCGCTTTCTG+AGG + chr2_4:59205912-59205931 Msa0338740:CDS 40.0%
TTTGAGTGATGCAGCAGAAA+AGG - chr2_4:59205975-59205994 None:intergenic 40.0%
AATCAAGCAATCATGCCTCT+TGG + chr2_4:59206043-59206062 Msa0338740:CDS 40.0%
CTAGAAATTATCCGCCTTGA+AGG + chr2_4:59206224-59206243 Msa0338740:CDS 40.0%
TAGGGATGTTCATCTCTTAC+AGG + chr2_4:59206274-59206293 Msa0338740:CDS 40.0%
TGGAATTGATGAGAATGCTG+TGG + chr2_4:59206400-59206419 Msa0338740:CDS 40.0%
GGAATTGATGAGAATGCTGT+GGG + chr2_4:59206401-59206420 Msa0338740:CDS 40.0%
GAATTGATGAGAATGCTGTG+GGG + chr2_4:59206402-59206421 Msa0338740:CDS 40.0%
AATTGATGAGAATGCTGTGG+GGG + chr2_4:59206403-59206422 Msa0338740:CDS 40.0%
TCTGGGAACATGTCATCAAT+TGG - chr2_4:59206452-59206471 None:intergenic 40.0%
GAGAATTCAACAGGACAATG+CGG - chr2_4:59206502-59206521 None:intergenic 40.0%
CAACTGGTTGAGAATTCAAC+AGG - chr2_4:59206511-59206530 None:intergenic 40.0%
ACAAAGAAACGTGACTCAAC+TGG - chr2_4:59206527-59206546 None:intergenic 40.0%
GCTTCATATATGAACGGTAC+CGG - chr2_4:59206567-59206586 None:intergenic 40.0%
AAGACCAGATGTCAAATCCA+AGG - chr2_4:59206658-59206677 None:intergenic 40.0%
!! TTCCAGTTTCCTTTTGAGAG+CGG + chr2_4:59206753-59206772 Msa0338740:CDS 40.0%
AAGCACTTACACTAGCTCAA+TGG + chr2_4:59206913-59206932 Msa0338740:CDS 40.0%
GTCTGAAAGCAGTCATTATC+TGG + chr2_4:59207034-59207053 Msa0338740:intron 40.0%
CTGAAAGCAGTCATTATCTG+GGG + chr2_4:59207036-59207055 Msa0338740:intron 40.0%
TGAAAGCAGTCATTATCTGG+GGG + chr2_4:59207037-59207056 Msa0338740:intron 40.0%
GAGCAGCATAAAATAGCATC+TGG - chr2_4:59207125-59207144 None:intergenic 40.0%
CGTATTCATCTTTGCTAACC+AGG + chr2_4:59207267-59207286 Msa0338740:CDS 40.0%
! GAGTTGTTTCCAACATGTCA+AGG - chr2_4:59207297-59207316 None:intergenic 40.0%
CATGTTGGAAACAACTCTAG+TGG + chr2_4:59207300-59207319 Msa0338740:CDS 40.0%
! TTTTGCGAAGTTAATGCAGC+AGG + chr2_4:59207387-59207406 Msa0338740:CDS 40.0%
CGCTATGCTCTTAAAGTAGA+TGG + chr2_4:59207479-59207498 Msa0338740:intron 40.0%
AGACAACAGTGTTCATTGCT+TGG + chr2_4:59207625-59207644 Msa0338740:CDS 40.0%
GGGGATTTAAATCCTGCAAT+AGG - chr2_4:59207683-59207702 None:intergenic 40.0%
GTGATCTGAGCTGAAACAGT+GGG - chr2_4:59202581-59202600 None:intergenic 45.0%
AGTGATCTGAGCTGAAACAG+TGG - chr2_4:59202582-59202601 None:intergenic 45.0%
TTCTTCCTCAAGCTCCATAG+AGG + chr2_4:59202764-59202783 Msa0338740:five_prime_UTR 45.0%
TTCTTCCTCTATGGAGCTTG+AGG - chr2_4:59202772-59202791 None:intergenic 45.0%
CACTCTTGAGACCCCAAATA+AGG - chr2_4:59203214-59203233 None:intergenic 45.0%
TGAGAAGGCAACAGCTGATT+CGG + chr2_4:59203489-59203508 Msa0338740:CDS 45.0%
GATCTGCTTAGGCTCAATGT+TGG - chr2_4:59203531-59203550 None:intergenic 45.0%
CATTGAGCCTAAGCAGATCA+AGG + chr2_4:59203532-59203551 Msa0338740:CDS 45.0%
AGCCTAAGCAGATCAAGGTT+TGG + chr2_4:59203537-59203556 Msa0338740:CDS 45.0%
TAGGGAGAAGCAGAGAAAAG+AGG + chr2_4:59203684-59203703 Msa0338740:CDS 45.0%
TCACAGCTGGTGAATGAGAA+TGG + chr2_4:59203793-59203812 Msa0338740:CDS 45.0%
CACAGCTGGTGAATGAGAAT+GGG + chr2_4:59203794-59203813 Msa0338740:CDS 45.0%
GGCTTACAGTGTGTAATTGC+TGG - chr2_4:59203828-59203847 None:intergenic 45.0%
CAGATTCCTATCAATTGCGG+AGG + chr2_4:59204185-59204204 Msa0338740:intron 45.0%
ATGTCTCCTCCGCAATTGAT+AGG - chr2_4:59204194-59204213 None:intergenic 45.0%
ATCAATTGCGGAGGAGACAT+TGG + chr2_4:59204194-59204213 Msa0338740:CDS 45.0%
GAGTTCCTTTCAAAGGCTAC+AGG + chr2_4:59204219-59204238 Msa0338740:CDS 45.0%
CAGTTCCTGTAGCCTTTGAA+AGG - chr2_4:59204227-59204246 None:intergenic 45.0%
! TACAGGAACTGCTGTCGATT+GGG + chr2_4:59204236-59204255 Msa0338740:CDS 45.0%
TGATTCTCTACCTTCATCCC+AGG - chr2_4:59204270-59204289 None:intergenic 45.0%
! CATTGTTTGTTAGCCTGGTC+CGG + chr2_4:59204400-59204419 Msa0338740:intron 45.0%
GCAAATATCCCAACCGAATC+CGG - chr2_4:59204422-59204441 None:intergenic 45.0%
CGACAATCACGATACCAAGT+TGG - chr2_4:59204644-59204663 None:intergenic 45.0%
! GTTTTCACAATGTTCCCAGC+TGG + chr2_4:59204674-59204693 Msa0338740:CDS 45.0%
ACAATGTTCCCAGCTGGAAA+TGG + chr2_4:59204680-59204699 Msa0338740:CDS 45.0%
TTGTTCCTCCATTTCCAGCT+GGG - chr2_4:59204691-59204710 None:intergenic 45.0%
ATTGTTCCTCCATTTCCAGC+TGG - chr2_4:59204692-59204711 None:intergenic 45.0%
TTTGGAAAACGGCAGTGTTG+TGG + chr2_4:59204870-59204889 Msa0338740:CDS 45.0%
GTTTGTGAAAGGTCACTGTC+TGG + chr2_4:59204981-59205000 Msa0338740:CDS 45.0%
GTCGAATCAAGTAGCCACTA+GGG - chr2_4:59205064-59205083 None:intergenic 45.0%
! TTGATTCGACCATGTGAAGG+TGG + chr2_4:59205074-59205093 Msa0338740:CDS 45.0%
ATTGATCCTCCACCTTCACA+TGG - chr2_4:59205086-59205105 None:intergenic 45.0%
GGTTTAGGTGGTCTACAATG+TGG - chr2_4:59205112-59205131 None:intergenic 45.0%
GCTCTATGAATCGTCGCAAA+TGG + chr2_4:59205257-59205276 Msa0338740:CDS 45.0%
TGGTGAAGTGGTGTATAGCA+TGG + chr2_4:59205433-59205452 Msa0338740:CDS 45.0%
GGTGAAGTGGTGTATAGCAT+GGG + chr2_4:59205434-59205453 Msa0338740:CDS 45.0%
AAGTGGTGTATAGCATGGGT+CGG + chr2_4:59205438-59205457 Msa0338740:CDS 45.0%
GGTTTCAATGACGCTGTCAA+TGG + chr2_4:59205608-59205627 Msa0338740:CDS 45.0%
! TGGTCTGTTCTGAACTGTGA+TGG + chr2_4:59205647-59205666 Msa0338740:CDS 45.0%
CAATTCCTCCAAGGAGTGAA+AGG - chr2_4:59205742-59205761 None:intergenic 45.0%
TTGCACAGACAATTCCTCCA+AGG - chr2_4:59205751-59205770 None:intergenic 45.0%
AGTGCGTAAATCCATTGGCA+CGG + chr2_4:59205794-59205813 Msa0338740:intron 45.0%
AGGCATGATTGCTTGATTGC+CGG - chr2_4:59206041-59206060 None:intergenic 45.0%
!! GGCGGATAATTTCTAGCATC+TGG - chr2_4:59206220-59206239 None:intergenic 45.0%
CATCTTGAGCAAGACCTTCA+AGG - chr2_4:59206241-59206260 None:intergenic 45.0%
ACAAACCATAACACGGGTAG+AGG - chr2_4:59206305-59206324 None:intergenic 45.0%
AACAGCAGCAAATCGAACCT+TGG + chr2_4:59206638-59206657 Msa0338740:CDS 45.0%
CGAACCTTGGATTTGACATC+TGG + chr2_4:59206651-59206670 Msa0338740:CDS 45.0%
!! ATCTGGTCTTGAAGTAAGCC+AGG + chr2_4:59206668-59206687 Msa0338740:CDS 45.0%
GCTCTCAAAAGGAAACTGGA+AGG - chr2_4:59206754-59206773 None:intergenic 45.0%
AACCGCTCTCAAAAGGAAAC+TGG - chr2_4:59206758-59206777 None:intergenic 45.0%
TGAGCTAGTGTAAGTGCTTC+TGG - chr2_4:59206912-59206931 None:intergenic 45.0%
AATGGATCTGCCAGAGCTAT+AGG + chr2_4:59206931-59206950 Msa0338740:CDS 45.0%
GCACACTTTACCTATAGCTC+TGG - chr2_4:59206944-59206963 None:intergenic 45.0%
! CACTTGCTGCAAAACCAAAC+AGG - chr2_4:59207245-59207264 None:intergenic 45.0%
TTCATCTTTGCTAACCAGGC+TGG + chr2_4:59207271-59207290 Msa0338740:CDS 45.0%
! AACAACTCTAGTGGCTCTAC+AGG + chr2_4:59207309-59207328 Msa0338740:CDS 45.0%
GCAGGTAATATCCTCGAGTT+TGG + chr2_4:59207405-59207424 Msa0338740:intron 45.0%
TGGGATCTGCATGTCAACAA+TGG + chr2_4:59207553-59207572 Msa0338740:CDS 45.0%
GGGATCTGCATGTCAACAAT+GGG + chr2_4:59207554-59207573 Msa0338740:CDS 45.0%
GGATCTGCATGTCAACAATG+GGG + chr2_4:59207555-59207574 Msa0338740:CDS 45.0%
! GAGAGACACCTTGATTCGTC+TGG + chr2_4:59203389-59203408 Msa0338740:CDS 50.0%
! GAGAAGGCAACAGCTGATTC+GGG + chr2_4:59203490-59203509 Msa0338740:CDS 50.0%
GCTCAATGTTGGCCAAAACC+GGG - chr2_4:59203520-59203539 None:intergenic 50.0%
GGCTCAATGTTGGCCAAAAC+CGG - chr2_4:59203521-59203540 None:intergenic 50.0%
CTCAGCTTCAGAGTGTGAAC+AGG + chr2_4:59203710-59203729 Msa0338740:CDS 50.0%
AAATGAGAGGCTGCAGAAGC+AGG + chr2_4:59203768-59203787 Msa0338740:CDS 50.0%
AGAGATGCTAATAGCCCTGC+TGG + chr2_4:59204070-59204089 Msa0338740:CDS 50.0%
GAGATGCTAATAGCCCTGCT+GGG + chr2_4:59204071-59204090 Msa0338740:CDS 50.0%
CTACAGGAACTGCTGTCGAT+TGG + chr2_4:59204235-59204254 Msa0338740:CDS 50.0%
CGGACCAGGCTAACAAACAA+TGG - chr2_4:59204402-59204421 None:intergenic 50.0%
! TTGTTAGCCTGGTCCGGATT+CGG + chr2_4:59204406-59204425 Msa0338740:intron 50.0%
GCCATTTCTCAAGGTGGCAA+CGG + chr2_4:59204440-59204459 Msa0338740:CDS 50.0%
TCCGTTGCCACCTTGAGAAA+TGG - chr2_4:59204444-59204463 None:intergenic 50.0%
ATGTTCCCAGCTGGAAATGG+AGG + chr2_4:59204683-59204702 Msa0338740:CDS 50.0%
GACATATGCTCCAATGACGC+TGG + chr2_4:59204807-59204826 Msa0338740:intron 50.0%
! GAAAGGTCACTGTCTGGTTC+TGG + chr2_4:59204987-59205006 Msa0338740:CDS 50.0%
GGTCGAATCAAGTAGCCACT+AGG - chr2_4:59205065-59205084 None:intergenic 50.0%
ATTCGACCATGTGAAGGTGG+AGG + chr2_4:59205077-59205096 Msa0338740:CDS 50.0%
TGTAGACCACCTAAACCTGC+AGG + chr2_4:59205115-59205134 Msa0338740:CDS 50.0%
GAACTCAGACCTGCAGGTTT+AGG - chr2_4:59205127-59205146 None:intergenic 50.0%
TGCAGGCACTTCGCTATATC+AGG + chr2_4:59205390-59205409 Msa0338740:intron 50.0%
! CTTTTAGCCAACGGTTGAGC+AGG + chr2_4:59205480-59205499 Msa0338740:CDS 50.0%
GCAGGCTGAAATAGGTTTCG+AGG - chr2_4:59205530-59205549 None:intergenic 50.0%
AGGAGTGAAAGGGAACTTGC+TGG - chr2_4:59205731-59205750 None:intergenic 50.0%
GCAAGTTCCCTTTCACTCCT+TGG + chr2_4:59205731-59205750 Msa0338740:CDS 50.0%
AGTTCCCTTTCACTCCTTGG+AGG + chr2_4:59205734-59205753 Msa0338740:CDS 50.0%
CATTTACTGCACCGTGCCAA+TGG - chr2_4:59205808-59205827 None:intergenic 50.0%
CATTGGCACGGTGCAGTAAA+TGG + chr2_4:59205806-59205825 Msa0338740:intron 50.0%
GCGAACTAAAACAGCAGGAG+TGG - chr2_4:59205906-59205925 None:intergenic 50.0%
TCTGCTGCATCACTCAAAGC+TGG + chr2_4:59205977-59205996 Msa0338740:CDS 50.0%
! TCACTCAAAGCTGGCTCCTA+TGG + chr2_4:59205986-59206005 Msa0338740:CDS 50.0%
CCTCATTCCAGGATAGCCAT+AGG - chr2_4:59206005-59206024 None:intergenic 50.0%
CCTATGGCTATCCTGGAATG+AGG + chr2_4:59206002-59206021 Msa0338740:CDS 50.0%
ATCCTGGAATGAGGTCTACG+AGG + chr2_4:59206011-59206030 Msa0338740:CDS 50.0%
AACCTCGTAGACCTCATTCC+AGG - chr2_4:59206016-59206035 None:intergenic 50.0%
ATGAGGTCTACGAGGTTCAC+CGG + chr2_4:59206019-59206038 Msa0338740:CDS 50.0%
CTTGAGCAAGACCTTCAAGG+CGG - chr2_4:59206238-59206257 None:intergenic 50.0%
TGCTTCCTCTACCCGTGTTA+TGG + chr2_4:59206297-59206316 Msa0338740:intron 50.0%
AGGACAATGCGGAAACCAGA+AGG - chr2_4:59206491-59206510 None:intergenic 50.0%
CAGGCAACAGCTCATGCTAA+CGG + chr2_4:59206687-59206706 Msa0338740:CDS 50.0%
!! TCCTTTTGAGAGCGGTTTGC+AGG + chr2_4:59206761-59206780 Msa0338740:CDS 50.0%
TCCTGCAAACCGCTCTCAAA+AGG - chr2_4:59206765-59206784 None:intergenic 50.0%
GCAGGATAATGTTGCAGCCA+TGG + chr2_4:59206779-59206798 Msa0338740:CDS 50.0%
!! CCAGAAGTGTTAACGCTGGA+TGG - chr2_4:59206864-59206883 None:intergenic 50.0%
CCATCCAGCGTTAACACTTC+TGG + chr2_4:59206861-59206880 Msa0338740:CDS 50.0%
TCCAGCGTTAACACTTCTGG+TGG + chr2_4:59206864-59206883 Msa0338740:CDS 50.0%
!! TCCACCAGAAGTGTTAACGC+TGG - chr2_4:59206868-59206887 None:intergenic 50.0%
!! TAAGTGCTTCTGGAGTGCCA+GGG - chr2_4:59206902-59206921 None:intergenic 50.0%
GGCTCTACAGGATATCACAC+TGG + chr2_4:59207321-59207340 Msa0338740:CDS 50.0%
! GGTTTGCTTGTATGCCAGCT+GGG + chr2_4:59207534-59207553 Msa0338740:CDS 50.0%
GCAGAAGCAGGTTTCACAGC+TGG + chr2_4:59203780-59203799 Msa0338740:CDS 55.0%
! GTCAGCATTTGGAGCTGCTG+GGG - chr2_4:59204005-59204024 None:intergenic 55.0%
! CGTCAGCATTTGGAGCTGCT+GGG - chr2_4:59204006-59204025 None:intergenic 55.0%
CCAGCAGCTCCAAATGCTGA+CGG + chr2_4:59204004-59204023 Msa0338740:CDS 55.0%
GCTCCAAATGCTGACGGTAG+TGG + chr2_4:59204010-59204029 Msa0338740:CDS 55.0%
ACGCCACTACCGTCAGCATT+TGG - chr2_4:59204016-59204035 None:intergenic 55.0%
!! CGGTAGTGGCGTTGATTCTG+CGG + chr2_4:59204024-59204043 Msa0338740:CDS 55.0%
TCGATTGGGTCCAGATGCCT+GGG + chr2_4:59204250-59204269 Msa0338740:CDS 55.0%
CTACCTTCATCCCAGGCATC+TGG - chr2_4:59204263-59204282 None:intergenic 55.0%
TTCTCAAGGTGGCAACGGAG+TGG + chr2_4:59204445-59204464 Msa0338740:CDS 55.0%
!! TCACTGTCTGGTTCTGGTGC+TGG + chr2_4:59204993-59205012 Msa0338740:CDS 55.0%
TGTGAGGCAGCTGCAGCATT+AGG - chr2_4:59205020-59205039 None:intergenic 55.0%
AGCTGCCTCACAGTTTGCGA+GGG + chr2_4:59205028-59205047 Msa0338740:CDS 55.0%
TTCACCCCTCGCAAACTGTG+AGG - chr2_4:59205036-59205055 None:intergenic 55.0%
AGGGGTGAAATGCTCCCTAG+TGG + chr2_4:59205047-59205066 Msa0338740:CDS 55.0%
CTCAGACCTGCAGGTTTAGG+TGG - chr2_4:59205124-59205143 None:intergenic 55.0%
GGTCAAGAACTCAGACCTGC+AGG - chr2_4:59205133-59205152 None:intergenic 55.0%
! TCTGAACTGTGATGGTGCCG+AGG + chr2_4:59205655-59205674 Msa0338740:CDS 55.0%
! CTGAACTGTGATGGTGCCGA+GGG + chr2_4:59205656-59205675 Msa0338740:CDS 55.0%
!! CTTTCTGAGGGAGCATCGCT+CGG + chr2_4:59205925-59205944 Msa0338740:CDS 55.0%
GTTCCCAGAAGATGCTCCCT+TGG + chr2_4:59206463-59206482 Msa0338740:CDS 55.0%
!! GCACCAAGGGAGCATCTTCT+GGG - chr2_4:59206469-59206488 None:intergenic 55.0%
!! CGGAAACCAGAAGGCACCAA+GGG - chr2_4:59206482-59206501 None:intergenic 55.0%
CGTTAGCATGAGCTGTTGCC+TGG - chr2_4:59206689-59206708 None:intergenic 55.0%
CCATGGCACGTCAGTATGTC+CGG + chr2_4:59206796-59206815 Msa0338740:CDS 55.0%
TGTAGTTTCCGCTGTGCAGG+CGG + chr2_4:59206821-59206840 Msa0338740:intron 55.0%
!! AAGTGCTTCTGGAGTGCCAG+GGG - chr2_4:59206901-59206920 None:intergenic 55.0%
!! GTAAGTGCTTCTGGAGTGCC+AGG - chr2_4:59206903-59206922 None:intergenic 55.0%
! GGGTTTGCTTGTATGCCAGC+TGG + chr2_4:59207533-59207552 Msa0338740:CDS 55.0%
GTTGACATGCAGATCCCAGC+TGG - chr2_4:59207551-59207570 None:intergenic 55.0%
CATATGATCAAGCCGTCGCG+TGG + chr2_4:59207588-59207607 Msa0338740:CDS 55.0%
AGCATGCACTTTCCACGCGA+CGG - chr2_4:59207603-59207622 None:intergenic 55.0%
!! ACAGCTGATTCGGGAGTGCC+CGG + chr2_4:59203499-59203518 Msa0338740:CDS 60.0%
!!! GATTCGGGAGTGCCCGGTTT+TGG + chr2_4:59203505-59203524 Msa0338740:CDS 60.0%
! CCGTCAGCATTTGGAGCTGC+TGG - chr2_4:59204007-59204026 None:intergenic 60.0%
GTCGATTGGGTCCAGATGCC+TGG + chr2_4:59204249-59204268 Msa0338740:CDS 60.0%
GGTCCAGATGCCTGGGATGA+AGG + chr2_4:59204257-59204276 Msa0338740:CDS 60.0%
! TAGCCTGGTCCGGATTCGGT+TGG + chr2_4:59204410-59204429 Msa0338740:intron 60.0%
! AGCCTGGTCCGGATTCGGTT+GGG + chr2_4:59204411-59204430 Msa0338740:intron 60.0%
ATCCCAACCGAATCCGGACC+AGG - chr2_4:59204416-59204435 None:intergenic 60.0%
CAGCTGCCTCACAGTTTGCG+AGG + chr2_4:59205027-59205046 Msa0338740:CDS 60.0%
GCTGCCTCACAGTTTGCGAG+GGG + chr2_4:59205029-59205048 Msa0338740:CDS 60.0%
!! GGAGTGTGCCAGAAGTGCTG+CGG + chr2_4:59205232-59205251 Msa0338740:CDS 60.0%
CGACGTACCTGCTCAACCGT+TGG - chr2_4:59205490-59205509 None:intergenic 60.0%
! GCTGGCTCCTATGGCTATCC+TGG + chr2_4:59205995-59206014 Msa0338740:CDS 60.0%
!! GGCACCAAGGGAGCATCTTC+TGG - chr2_4:59206470-59206489 None:intergenic 60.0%
!! GATGCTCCCTTGGTGCCTTC+TGG + chr2_4:59206473-59206492 Msa0338740:CDS 60.0%
!! GCGGAAACCAGAAGGCACCA+AGG - chr2_4:59206483-59206502 None:intergenic 60.0%
CCGGACATACTGACGTGCCA+TGG - chr2_4:59206799-59206818 None:intergenic 60.0%
GCACAGCGGAAACTACACGC+CGG - chr2_4:59206818-59206837 None:intergenic 60.0%
GCGTGTAGTTTCCGCTGTGC+AGG + chr2_4:59206818-59206837 Msa0338740:intron 60.0%
GGTGGAGCAAAACTCTCCCC+TGG + chr2_4:59206882-59206901 Msa0338740:CDS 60.0%
CCAACATGTCAAGGCCAGCC+TGG - chr2_4:59207288-59207307 None:intergenic 60.0%
!! CCAGGCTGGCCTTGACATGT+TGG + chr2_4:59207285-59207304 Msa0338740:CDS 60.0%
CGAGCAGCAGCCAGCGTCAT+TGG - chr2_4:59204820-59204839 None:intergenic 65.0%
TGGCTGCTGCTCGCGACTTC+TGG + chr2_4:59204827-59204846 Msa0338740:CDS 65.0%
TAGAGCGGCCGCAGCACTTC+TGG - chr2_4:59205243-59205262 None:intergenic 65.0%
!! TGAGGGAGCATCGCTCGGAG+TGG + chr2_4:59205930-59205949 Msa0338740:CDS 65.0%
!! GAGGGAGCATCGCTCGGAGT+GGG + chr2_4:59205931-59205950 Msa0338740:CDS 65.0%
CGTTGCAACCGCCTGCACAG+CGG - chr2_4:59206832-59206851 None:intergenic 65.0%
CGCTGTGCAGGCGGTTGCAA+CGG + chr2_4:59206830-59206849 Msa0338740:intron 65.0%
GGAGTGGCAGCTCGAGCCTG+TGG + chr2_4:59204461-59204480 Msa0338740:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 59202433 59207935 59202433 ID=Msa0338740;Name=Msa0338740
chr2_4 mRNA 59202433 59207935 59202433 ID=Msa0338740-mRNA-1;Parent=Msa0338740;Name=Msa0338740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=914|0.88|0.84|1|0.88|0.84|19|256|833
chr2_4 exon 59202433 59203573 59202433 ID=Msa0338740-mRNA-1:exon:18387;Parent=Msa0338740-mRNA-1
chr2_4 exon 59203681 59203840 59203681 ID=Msa0338740-mRNA-1:exon:18388;Parent=Msa0338740-mRNA-1
chr2_4 exon 59204001 59204092 59204001 ID=Msa0338740-mRNA-1:exon:18389;Parent=Msa0338740-mRNA-1
chr2_4 exon 59204188 59204278 59204188 ID=Msa0338740-mRNA-1:exon:18390;Parent=Msa0338740-mRNA-1
chr2_4 exon 59204413 59204508 59204413 ID=Msa0338740-mRNA-1:exon:18391;Parent=Msa0338740-mRNA-1
chr2_4 exon 59204617 59204730 59204617 ID=Msa0338740-mRNA-1:exon:18392;Parent=Msa0338740-mRNA-1
chr2_4 exon 59204808 59204891 59204808 ID=Msa0338740-mRNA-1:exon:18393;Parent=Msa0338740-mRNA-1
chr2_4 exon 59204981 59205136 59204981 ID=Msa0338740-mRNA-1:exon:18394;Parent=Msa0338740-mRNA-1
chr2_4 exon 59205228 59205302 59205228 ID=Msa0338740-mRNA-1:exon:18395;Parent=Msa0338740-mRNA-1
chr2_4 exon 59205395 59205501 59205395 ID=Msa0338740-mRNA-1:exon:18396;Parent=Msa0338740-mRNA-1
chr2_4 exon 59205607 59205790 59205607 ID=Msa0338740-mRNA-1:exon:18397;Parent=Msa0338740-mRNA-1
chr2_4 exon 59205899 59206087 59205899 ID=Msa0338740-mRNA-1:exon:18398;Parent=Msa0338740-mRNA-1
chr2_4 exon 59206221 59206295 59206221 ID=Msa0338740-mRNA-1:exon:18399;Parent=Msa0338740-mRNA-1
chr2_4 exon 59206392 59206526 59206392 ID=Msa0338740-mRNA-1:exon:18400;Parent=Msa0338740-mRNA-1
chr2_4 exon 59206621 59206821 59206621 ID=Msa0338740-mRNA-1:exon:18401;Parent=Msa0338740-mRNA-1
chr2_4 exon 59206840 59206952 59206840 ID=Msa0338740-mRNA-1:exon:18402;Parent=Msa0338740-mRNA-1
chr2_4 exon 59207046 59207151 59207046 ID=Msa0338740-mRNA-1:exon:18403;Parent=Msa0338740-mRNA-1
chr2_4 exon 59207259 59207408 59207259 ID=Msa0338740-mRNA-1:exon:18404;Parent=Msa0338740-mRNA-1
chr2_4 exon 59207533 59207935 59207533 ID=Msa0338740-mRNA-1:exon:18405;Parent=Msa0338740-mRNA-1
chr2_4 five_prime_UTR 59202433 59203346 59202433 ID=Msa0338740-mRNA-1:five_prime_utr;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59203347 59203573 59203347 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59203681 59203840 59203681 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59204001 59204092 59204001 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59204188 59204278 59204188 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59204413 59204508 59204413 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59204617 59204730 59204617 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59204808 59204891 59204808 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59204981 59205136 59204981 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59205228 59205302 59205228 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59205395 59205501 59205395 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59205607 59205790 59205607 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59205899 59206087 59205899 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59206221 59206295 59206221 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59206392 59206526 59206392 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59206621 59206821 59206621 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59206840 59206952 59206840 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59207046 59207151 59207046 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59207259 59207408 59207259 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 CDS 59207533 59207679 59207533 ID=Msa0338740-mRNA-1:cds;Parent=Msa0338740-mRNA-1
chr2_4 three_prime_UTR 59207680 59207935 59207680 ID=Msa0338740-mRNA-1:three_prime_utr;Parent=Msa0338740-mRNA-1
Gene Sequence

>Msa0338740

ATGGCTATGGCTGTTGCACAACAACAAAGAGATAACAGCATTGAGAGACACCTTGATTCGTCTGGCAAATATGTGCGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCTAAGCCTAGTTCATTGAGAAGGCAACAGCTGATTCGGGAGTGCCCGGTTTTGGCCAACATTGAGCCTAAGCAGATCAAGGTTTGGTTTCAGAATAGGAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTCAGCTTCAGAGTGTGAACAGGAAACTTTCTGCGATGAATAAGCTGTTGATGGAGGAAAATGAGAGGCTGCAGAAGCAGGTTTCACAGCTGGTGAATGAGAATGGGTTTATGCGCCAGCAATTACACACTACCCCAGCAGCTCCAAATGCTGACGGTAGTGGCGTTGATTCTGCGGCTGCTGCTCCTATGAATTCATTGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCGGAGGAGACATTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTGGCAACGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACTAAGATTGTGGAGATCTTAAAAGATCGCCCAACTTGGTATCGTGATTGTCGGAGTTCAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGAACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACGCTGGCTGCTGCTCGCGACTTCTGGACTCTAAGATACACTACAAATTTGGAAAACGGCAGTGTTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGTCCTAATGCTGCAGCTGCCTCACAGTTTGCGAGGGGTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTGCAGGCATGGAGTGTGCCAGAAGTGCTGCGGCCGCTCTATGAATCGTCGCAAATGGTAGCTCAGAGATTGACAATTGCGGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGTGAAGTGGTGTATAGCATGGGTCGGCAACCTGCAGTTCTTAGAACTTTTAGCCAACGGTTGAGCAGAGGTTTCAATGACGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTTCTGAACTGTGATGGTGCCGAGGGTGTTACTATTTCAGTGAATTCAATCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTTCACTCCTTGGAGGAATTGTCTGTGCAAAAGCTTCTATGTTACTCCAAAACACCACTCCTGCTGTTTTAGTTCGCTTTCTGAGGGAGCATCGCTCGGAGTGGGCTGATTTTAGTGTTGATGCCTTTTCTGCTGCATCACTCAAAGCTGGCTCCTATGGCTATCCTGGAATGAGGTCTACGAGGTTCACCGGCAATCAAGCAATCATGCCTCTTGGACATACAATTGAACATGAAGAGATGCTAGAAATTATCCGCCTTGAAGGTCTTGCTCAAGATGATTCTTTTGTTTCTAGGGATGTTCATCTCTTACAGTTATGTACTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCCGAGCTCATATTTGCTCCAATTGATGACATGTTCCCAGAAGATGCTCCCTTGGTGCCTTCTGGTTTCCGCATTGTCCTGTTGAATTCTCAACCAGGTGATACAAAGAACATAACAGCAGCAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAAGCCAGGCAACAGCTCATGCTAACGGAGATGCATCGTGTTCTAACAATCGATGTGCGTTGACTGTTGCCTTCCAGTTTCCTTTTGAGAGCGGTTTGCAGGATAATGTTGCAGCCATGGCACGTCAGTATGTCCGGCGTGCGGTTGCAACGGCTATATCTCCATCCAGCGTTAACACTTCTGGTGGAGCAAAACTCTCCCCTGGCACTCCAGAAGCACTTACACTAGCTCAATGGATCTGCCAGAGCTATAGTCATTATCTGGGGGCGCAACTGCTGAGATCTGATTCTCTTATTGGTGATATGCTACTGAAACATTTGTGGCATCATCCAGATGCTATTTTATGCTGCTCTTTGAAGCAAGTGCCCGTATTCATCTTTGCTAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTCTACAGGATATCACACTGGACAAAATATTTGATGAATCTGCACGCAAGAATTTGATTGCATATTTTGCGAAGTTAATGCAGCAGGGGTTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGGCGACATGCTTCATATGATCAAGCCGTCGCGTGGAAAGTGCATGCTGAAGACAACAGTGTTCATTGCTTGGCTTTCTCGTTCATTAATTGGTCATTTATATGA
Protein sequence

>Msa0338740

MAMAVAQQQRDNSIERHLDSSGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASQLQSVNRKLSAMNKLLMEENERLQKQVSQLVNENGFMRQQLHTTPAAPNADGSGVDSAAAAPMNSLRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGGNGVAARACGLVSLEPTKIVEILKDRPTWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLAAARDFWTLRYTTNLENGSVVVCERSLSGSGAGPNAAAASQFARGEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSQMVAQRLTIAALRYIRQVAQETSGEVVYSMGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNTTPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYPGMRSTRFTGNQAIMPLGHTIEHEEMLEIIRLEGLAQDDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIVLLNSQPGDTKNITAANRTLDLTSGLEVSQATAHANGDASCSNNRCALTVAFQFPFESGLQDNVAAMARQYVRRAVATAISPSSVNTSGGAKLSPGTPEALTLAQWICQSYSHYLGAQLLRSDSLIGDMLLKHLWHHPDAILCCSLKQVPVFIFANQAGLDMLETTLVALQDITLDKIFDESARKNLIAYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVHAEDNSVHCLAFSFINWSFI*