Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264190 | XP_003597300.2 | 95.618 | 251 | 7 | 2 | 1 | 247 | 1 | 251 | 4.99e-173 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264190 | Q2HU26 | 95.618 | 251 | 7 | 2 | 1 | 247 | 1 | 251 | 2.38e-173 | 486 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0264190 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222650 | Msa0264190 | 0.824723 | 6.914506e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264190 | MtrunA17_Chr2g0327621 | 95.618 | 251 | 7 | 2 | 1 | 247 | 1 | 251 | 4.59e-177 | 486 |
| Msa0264190 | MtrunA17_Chr4g0030421 | 65.909 | 132 | 43 | 2 | 118 | 247 | 1 | 132 | 9.32e-50 | 159 |
| Msa0264190 | MtrunA17_Chr8g0387241 | 48.101 | 158 | 62 | 7 | 55 | 202 | 132 | 279 | 8.72e-29 | 110 |
| Msa0264190 | MtrunA17_Chr5g0397361 | 43.860 | 114 | 43 | 2 | 87 | 200 | 130 | 222 | 4.51e-21 | 89.0 |
| Msa0264190 | MtrunA17_Chr1g0186171 | 46.000 | 100 | 47 | 2 | 102 | 196 | 264 | 361 | 3.42e-20 | 88.6 |
| Msa0264190 | MtrunA17_Chr2g0311591 | 47.059 | 102 | 35 | 2 | 142 | 243 | 161 | 243 | 4.84e-20 | 86.7 |
| Msa0264190 | MtrunA17_Chr1g0168401 | 43.878 | 98 | 51 | 1 | 103 | 196 | 267 | 364 | 3.40e-19 | 85.9 |
| Msa0264190 | MtrunA17_Chr4g0030411 | 51.807 | 83 | 36 | 1 | 33 | 115 | 29 | 107 | 1.61e-17 | 76.3 |
| Msa0264190 | MtrunA17_Chr1g0147111 | 32.867 | 143 | 79 | 4 | 62 | 199 | 150 | 280 | 2.37e-16 | 76.6 |
| Msa0264190 | MtrunA17_Chr3g0126721 | 57.692 | 52 | 22 | 0 | 147 | 198 | 226 | 277 | 4.43e-15 | 72.8 |
| Msa0264190 | MtrunA17_Chr1g0150471 | 42.188 | 64 | 37 | 0 | 140 | 203 | 244 | 307 | 2.74e-11 | 62.4 |
| Msa0264190 | MtrunA17_Chr4g0072871 | 44.262 | 61 | 31 | 1 | 137 | 197 | 287 | 344 | 4.44e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264190 | AT5G59990.1 | 52.899 | 138 | 52 | 2 | 66 | 203 | 91 | 215 | 1.70e-32 | 119 |
| Msa0264190 | AT5G41380.1 | 42.135 | 178 | 74 | 6 | 72 | 243 | 151 | 305 | 4.88e-30 | 114 |
| Msa0264190 | AT1G63820.1 | 47.581 | 124 | 56 | 2 | 103 | 221 | 139 | 258 | 8.62e-28 | 108 |
| Msa0264190 | AT1G04500.3 | 35.632 | 174 | 81 | 5 | 34 | 196 | 171 | 324 | 4.69e-24 | 99.4 |
| Msa0264190 | AT1G04500.4 | 35.632 | 174 | 81 | 5 | 34 | 196 | 180 | 333 | 5.06e-24 | 99.4 |
| Msa0264190 | AT1G04500.1 | 35.632 | 174 | 81 | 5 | 34 | 196 | 180 | 333 | 5.06e-24 | 99.4 |
| Msa0264190 | AT2G33350.4 | 46.535 | 101 | 47 | 2 | 103 | 196 | 244 | 344 | 2.56e-23 | 97.8 |
| Msa0264190 | AT2G33350.2 | 46.535 | 101 | 47 | 2 | 103 | 196 | 255 | 355 | 2.79e-23 | 97.8 |
| Msa0264190 | AT2G33350.5 | 46.535 | 101 | 47 | 2 | 103 | 196 | 264 | 364 | 3.65e-23 | 97.4 |
| Msa0264190 | AT2G33350.1 | 46.078 | 102 | 47 | 3 | 103 | 196 | 255 | 356 | 4.56e-22 | 94.4 |
| Msa0264190 | AT3G12890.1 | 54.651 | 86 | 38 | 1 | 131 | 215 | 119 | 204 | 1.01e-21 | 90.9 |
| Msa0264190 | AT5G53420.2 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 2.69e-16 | 75.1 |
| Msa0264190 | AT5G53420.5 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 2.69e-16 | 75.1 |
| Msa0264190 | AT5G53420.4 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 2.69e-16 | 75.1 |
| Msa0264190 | AT5G53420.1 | 34.884 | 129 | 68 | 4 | 68 | 195 | 149 | 262 | 4.49e-16 | 75.9 |
| Msa0264190 | AT5G59990.2 | 45.872 | 109 | 46 | 2 | 66 | 174 | 91 | 186 | 3.65e-15 | 72.0 |
| Msa0264190 | AT4G27900.1 | 32.787 | 122 | 59 | 3 | 100 | 198 | 140 | 261 | 1.21e-14 | 72.0 |
| Msa0264190 | AT4G27900.2 | 32.787 | 122 | 59 | 3 | 100 | 198 | 140 | 261 | 1.21e-14 | 72.0 |
| Msa0264190 | AT2G24790.1 | 43.056 | 72 | 37 | 1 | 125 | 192 | 199 | 270 | 4.58e-11 | 62.0 |
| Msa0264190 | AT5G15850.1 | 45.283 | 53 | 29 | 0 | 147 | 199 | 282 | 334 | 5.14e-11 | 62.4 |
| Msa0264190 | AT5G24930.1 | 43.333 | 60 | 34 | 0 | 139 | 198 | 283 | 342 | 8.15e-11 | 61.6 |
Find 61 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCTCCTTCTCCATTTA+TGG | 0.057189 | 2_2:-64021704 | Msa0264190:CDS |
| CGGATAGGAGGCCACGAATT+AGG | 0.208419 | 2_2:-64019863 | Msa0264190:CDS |
| GAACTTTAACAAGAAAATTA+AGG | 0.269338 | 2_2:-64020855 | Msa0264190:intron |
| GGATAGGAGGCCACGAATTA+GGG | 0.287165 | 2_2:-64019862 | Msa0264190:CDS |
| AGGATGAAGAAGATGAAAAT+TGG | 0.295769 | 2_2:-64019764 | Msa0264190:CDS |
| AACAAGATTTGCAGCAACTA+TGG | 0.316149 | 2_2:+64019725 | None:intergenic |
| CATTCCCTTCAGTACAATAA+TGG | 0.321357 | 2_2:-64021535 | Msa0264190:CDS |
| TCAGGGATATGTTCCATAAA+TGG | 0.329934 | 2_2:+64021691 | None:intergenic |
| TTGCAGTACCGGCGATTTGC+AGG | 0.339328 | 2_2:-64021440 | Msa0264190:intron |
| TTTCAAGGAAGTTCTTCCTT+TGG | 0.354729 | 2_2:-64019693 | Msa0264190:CDS |
| GAGTCTAACTCATTGAAATC+AGG | 0.374546 | 2_2:+64021673 | None:intergenic |
| CTTGTTCATGATGAGTTTCA+AGG | 0.385277 | 2_2:-64019708 | Msa0264190:CDS |
| TCCTATCCGCCAATGTCTTT+CGG | 0.395899 | 2_2:+64019877 | None:intergenic |
| TGTATTATTGAATCAAACTT+TGG | 0.409644 | 2_2:-64019440 | Msa0264190:three_prime_UTR |
| ATGTGGCTCCACTCGACTAT+AGG | 0.414777 | 2_2:+64019804 | None:intergenic |
| GAAAGTAGTATGATCATAGA+AGG | 0.422699 | 2_2:-64020956 | Msa0264190:CDS |
| ATTCCCTTCAGTACAATAAT+GGG | 0.429789 | 2_2:-64021534 | Msa0264190:CDS |
| TGCATCAAGATTGGAGTACT+TGG | 0.434559 | 2_2:+64021574 | None:intergenic |
| ATGCTTCTCTGCATCAAGAT+TGG | 0.436083 | 2_2:+64021565 | None:intergenic |
| CATTGGTGGTGGGGAGGAAG+AGG | 0.451326 | 2_2:-64019784 | Msa0264190:CDS |
| GAAGGAGATGGAAGAAGAAA+GGG | 0.457613 | 2_2:+64021715 | None:intergenic |
| GTGAGGAAAGTTTGCAGTAC+CGG | 0.459829 | 2_2:-64021451 | Msa0264190:CDS |
| AGAAGGAGATGGAAGAAGAA+AGG | 0.460726 | 2_2:+64021714 | None:intergenic |
| AGAAGAAAGGGTGTTGAGAA+TGG | 0.469563 | 2_2:+64021727 | None:intergenic |
| GAGTGGAGCCACATTGGTGG+TGG | 0.477837 | 2_2:-64019795 | Msa0264190:CDS |
| TTGAAAGATACAGAAGAAAG+AGG | 0.482706 | 2_2:-64020886 | Msa0264190:CDS |
| AATGAAATGTCAAGTGTGTA+TGG | 0.491009 | 2_2:+64021846 | None:intergenic |
| TGTTGAGAATGGAATATTGT+TGG | 0.508851 | 2_2:+64021738 | None:intergenic |
| AGTGGAGCCACATTGGTGGT+GGG | 0.516680 | 2_2:-64019794 | Msa0264190:CDS |
| AGCAGTGGCTATAGCAGCTA+TGG | 0.525220 | 2_2:-64021610 | Msa0264190:CDS |
| GTACTGCAAACTTTCCTCAC+TGG | 0.528382 | 2_2:+64021454 | None:intergenic |
| GCAAAACGTCCCCTAATTCG+TGG | 0.530988 | 2_2:+64019852 | None:intergenic |
| AGTCTAACTCATTGAAATCA+GGG | 0.536173 | 2_2:+64021674 | None:intergenic |
| GAGTCCCATTATTGTACTGA+AGG | 0.542232 | 2_2:+64021530 | None:intergenic |
| GTCGAGTGGAGCCACATTGG+TGG | 0.548825 | 2_2:-64019798 | Msa0264190:CDS |
| GCCGAAAGACATTGGCGGAT+AGG | 0.550818 | 2_2:-64019878 | Msa0264190:CDS |
| ACAGAAGAAAGAGGAATCAG+AGG | 0.553930 | 2_2:-64020877 | Msa0264190:CDS |
| GTATGTTTGCCGAAAGACAT+TGG | 0.562441 | 2_2:-64019886 | Msa0264190:CDS |
| GAGCCACATTGGTGGTGGGG+AGG | 0.566927 | 2_2:-64019790 | Msa0264190:CDS |
| GAAAGACATTGGCGGATAGG+AGG | 0.570627 | 2_2:-64019875 | Msa0264190:CDS |
| TCCATAAATGGAGAAGGAGA+TGG | 0.571408 | 2_2:+64021703 | None:intergenic |
| GTGGAGCCACATTGGTGGTG+GGG | 0.572282 | 2_2:-64019793 | Msa0264190:CDS |
| TCAACTCCGAGTTATTCAGC+TGG | 0.581544 | 2_2:+64021632 | None:intergenic |
| TCAGCTGGGAGAGAGTGTCT+TGG | 0.586821 | 2_2:+64021647 | None:intergenic |
| ATACTACTTTCACTAGACAA+TGG | 0.602525 | 2_2:+64020968 | None:intergenic |
| AAGATTGGAGTACTTGGAGA+AGG | 0.605160 | 2_2:+64021580 | None:intergenic |
| CAACTCCGAGTTATTCAGCT+GGG | 0.608456 | 2_2:+64021633 | None:intergenic |
| CTTCCTCCCCACCACCAATG+TGG | 0.613096 | 2_2:+64019787 | None:intergenic |
| ATATGTTCCATAAATGGAGA+AGG | 0.614198 | 2_2:+64021697 | None:intergenic |
| AGTCCCATTATTGTACTGAA+GGG | 0.624751 | 2_2:+64021531 | None:intergenic |
| AGTGGCTATAGCAGCTATGG+TGG | 0.633412 | 2_2:-64021607 | Msa0264190:CDS |
| ATTCTAATATAATAGACCAA+AGG | 0.637951 | 2_2:+64019677 | None:intergenic |
| GATAGGAGGCCACGAATTAG+GGG | 0.642140 | 2_2:-64019861 | Msa0264190:CDS |
| ATAGTGTACCTGCAAATCGC+CGG | 0.645719 | 2_2:+64021432 | None:intergenic |
| ATAGTCGAGTGGAGCCACAT+TGG | 0.657395 | 2_2:-64019801 | Msa0264190:CDS |
| TCTCTCCCAGCTGAATAACT+CGG | 0.662391 | 2_2:-64021638 | Msa0264190:CDS |
| ATAAGAAACCTATAGTCGAG+TGG | 0.670337 | 2_2:-64019812 | Msa0264190:CDS |
| AATAACTCGGAGTTGAGCAG+TGG | 0.681830 | 2_2:-64021625 | Msa0264190:CDS |
| TGTTTGCCGAAAGACATTGG+CGG | 0.695673 | 2_2:-64019883 | Msa0264190:CDS |
| ACTCAGACGATGCTCCAGTG+AGG | 0.708922 | 2_2:-64021468 | Msa0264190:CDS |
| GCAACATAATCATCATCACG+TGG | 0.724747 | 2_2:-64020996 | Msa0264190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAAACTTTTTTTTTTTTT+TGG | - | chr2_2:64019949-64019968 | Msa0264190:intron | 10.0% |
| !!! | AGAAATTTTTAATTTTTTTG+CGG | + | chr2_2:64020079-64020098 | None:intergenic | 10.0% |
| !!! | TATTTAAGAATGTTTTTTTA+AGG | - | chr2_2:64020215-64020234 | Msa0264190:intron | 10.0% |
| !!! | ATTTAAGAATGTTTTTTTAA+GGG | - | chr2_2:64020216-64020235 | Msa0264190:intron | 10.0% |
| !! | TTAAAAAAACTATGAATTTG+TGG | + | chr2_2:64020044-64020063 | None:intergenic | 15.0% |
| !!! | TTGAAAAACATTTTTTTTTG+CGG | + | chr2_2:64020107-64020126 | None:intergenic | 15.0% |
| !!! | GAGTATATTGTTATTAATAA+GGG | + | chr2_2:64021064-64021083 | None:intergenic | 15.0% |
| !!! | GTATACATTTTTTTTGAATT+TGG | + | chr2_2:64021103-64021122 | None:intergenic | 15.0% |
| !!! | GTACAATAATACTTTAAAAA+TGG | + | chr2_2:64021685-64021704 | None:intergenic | 15.0% |
| !! | GAACTTTAACAAGAAAATTA+AGG | - | chr2_2:64020442-64020461 | Msa0264190:intron | 20.0% |
| !! | ATAAAAAGAACAAGAAGTAA+TGG | - | chr2_2:64020614-64020633 | Msa0264190:intron | 20.0% |
| !! | TGATAGAAAATTTCATAAAG+GGG | + | chr2_2:64020678-64020697 | None:intergenic | 20.0% |
| !! | GTGATAGAAAATTTCATAAA+GGG | + | chr2_2:64020679-64020698 | None:intergenic | 20.0% |
| !! | AGTGATAGAAAATTTCATAA+AGG | + | chr2_2:64020680-64020699 | None:intergenic | 20.0% |
| !! | TGGTGAAAAAATAAATTCAT+TGG | - | chr2_2:64020753-64020772 | Msa0264190:intron | 20.0% |
| !!! | GGAGTATATTGTTATTAATA+AGG | + | chr2_2:64021065-64021084 | None:intergenic | 20.0% |
| !!! | ATTTGGAGTATATTGTTATT+TGG | + | chr2_2:64021069-64021088 | None:intergenic | 20.0% |
| !! | AATTTGTACTAAATAGTGTA+TGG | + | chr2_2:64021260-64021279 | None:intergenic | 20.0% |
| !! | ATTCTAATATAATAGACCAA+AGG | + | chr2_2:64021623-64021642 | None:intergenic | 20.0% |
| !!! | TTTTAAAGTATTATTGTACG+TGG | - | chr2_2:64021686-64021705 | Msa0264190:CDS | 20.0% |
| !! | AAGTCCTATAAAAAGATATA+GGG | + | chr2_2:64021820-64021839 | None:intergenic | 20.0% |
| !! | TAAGTCCTATAAAAAGATAT+AGG | + | chr2_2:64021821-64021840 | None:intergenic | 20.0% |
| !! | TGTATTATTGAATCAAACTT+TGG | - | chr2_2:64021857-64021876 | Msa0264190:five_prime_UTR | 20.0% |
| !!! | TCGCATTTTAATAATTTTGG+AGG | - | chr2_2:64019913-64019932 | Msa0264190:intron | 25.0% |
| ! | AAAACTTTGTGCATTTCTTT+AGG | + | chr2_2:64020152-64020171 | None:intergenic | 25.0% |
| !!! | TGAATTTATTTTTTCACCAG+TGG | + | chr2_2:64020752-64020771 | None:intergenic | 25.0% |
| ! | AACTAATTACGCATGTATAA+GGG | + | chr2_2:64020790-64020809 | None:intergenic | 25.0% |
| ! | TAACTAATTACGCATGTATA+AGG | + | chr2_2:64020791-64020810 | None:intergenic | 25.0% |
| !!! | ATACTGTTTATTGATTCTAG+TGG | - | chr2_2:64021119-64021138 | Msa0264190:intron | 25.0% |
| ! | CCTAAATAGTAGTATAATGA+TGG | + | chr2_2:64021146-64021165 | None:intergenic | 25.0% |
| ! | CCATCATTATACTACTATTT+AGG | - | chr2_2:64021143-64021162 | Msa0264190:intron | 25.0% |
| !! | ACTGAACTCTAAAAACTATA+TGG | + | chr2_2:64021777-64021796 | None:intergenic | 25.0% |
| AATGAAATGTCAAGTGTGTA+TGG | + | chr2_2:64019454-64019473 | None:intergenic | 30.0% | |
| TGTTGAGAATGGAATATTGT+TGG | + | chr2_2:64019562-64019581 | None:intergenic | 30.0% | |
| ATATGTTCCATAAATGGAGA+AGG | + | chr2_2:64019603-64019622 | None:intergenic | 30.0% | |
| AGTCTAACTCATTGAAATCA+GGG | + | chr2_2:64019626-64019645 | None:intergenic | 30.0% | |
| ATTCCCTTCAGTACAATAAT+GGG | - | chr2_2:64019763-64019782 | Msa0264190:CDS | 30.0% | |
| !!! | TCATTGTTTTAGATTGCTTG+CGG | - | chr2_2:64019890-64019909 | Msa0264190:intron | 30.0% |
| !! | CGGTCGCATTTTAATAATTT+TGG | - | chr2_2:64019910-64019929 | Msa0264190:intron | 30.0% |
| ATACTACTTTCACTAGACAA+TGG | + | chr2_2:64020332-64020351 | None:intergenic | 30.0% | |
| GAAAGTAGTATGATCATAGA+AGG | - | chr2_2:64020341-64020360 | Msa0264190:intron | 30.0% | |
| ! | TTCTCACTTTCTTTTCTTCT+GGG | + | chr2_2:64020391-64020410 | None:intergenic | 30.0% |
| ! | ATTCTCACTTTCTTTTCTTC+TGG | + | chr2_2:64020392-64020411 | None:intergenic | 30.0% |
| TTGAAAGATACAGAAGAAAG+AGG | - | chr2_2:64020411-64020430 | Msa0264190:intron | 30.0% | |
| CAAAGAGGAAAATAAATGCA+TGG | - | chr2_2:64020648-64020667 | Msa0264190:intron | 30.0% | |
| CTAAAAGACACTTCAAATCA+TGG | + | chr2_2:64020896-64020915 | None:intergenic | 30.0% | |
| AACTCGATTAGAATATTGAC+CGG | - | chr2_2:64021173-64021192 | Msa0264190:intron | 30.0% | |
| !! | AGCGTTATAGCATTTTAGTA+CGG | - | chr2_2:64021302-64021321 | Msa0264190:intron | 30.0% |
| AGGATGAAGAAGATGAAAAT+TGG | - | chr2_2:64021533-64021552 | Msa0264190:CDS | 30.0% | |
| !!! | ATAGTTTTTAGAGTTCAGTC+AGG | - | chr2_2:64021778-64021797 | Msa0264190:exon | 30.0% |
| !!! | TAGTTTTTAGAGTTCAGTCA+GGG | - | chr2_2:64021779-64021798 | Msa0264190:exon | 30.0% |
| ! | AGTGCCCTATATCTTTTTAT+AGG | - | chr2_2:64021813-64021832 | Msa0264190:five_prime_UTR | 30.0% |
| TCAGGGATATGTTCCATAAA+TGG | + | chr2_2:64019609-64019628 | None:intergenic | 35.0% | |
| GAGTCTAACTCATTGAAATC+AGG | + | chr2_2:64019627-64019646 | None:intergenic | 35.0% | |
| CATTCCCTTCAGTACAATAA+TGG | - | chr2_2:64019762-64019781 | Msa0264190:CDS | 35.0% | |
| AGTCCCATTATTGTACTGAA+GGG | + | chr2_2:64019769-64019788 | None:intergenic | 35.0% | |
| GAGCAATTCAGCAAAAAAAG+CGG | + | chr2_2:64019808-64019827 | None:intergenic | 35.0% | |
| ! | CGTTTTTCACAGAGGATTAA+CGG | - | chr2_2:64020275-64020294 | Msa0264190:intron | 35.0% |
| ! | TTCTTTTCTTCTGGGCTATA+TGG | + | chr2_2:64020383-64020402 | None:intergenic | 35.0% |
| TAGTCAGTGTATATAGCAAC+AGG | - | chr2_2:64020913-64020932 | Msa0264190:CDS | 35.0% | |
| ! | AACAGGTTCAGAATTTTGTG+AGG | - | chr2_2:64020930-64020949 | Msa0264190:CDS | 35.0% |
| GAGGTGTGAAAATCTTCTTA+CGG | - | chr2_2:64020949-64020968 | Msa0264190:CDS | 35.0% | |
| ! | TTGTTATTAATAAGGGCGTG+TGG | + | chr2_2:64021057-64021076 | None:intergenic | 35.0% |
| ! | TAGTGTTGCTATAACTGGTT+TGG | + | chr2_2:64021204-64021223 | None:intergenic | 35.0% |
| ! | GCTAATAGTGTTGCTATAAC+TGG | + | chr2_2:64021209-64021228 | None:intergenic | 35.0% |
| !! | GTTATAGCATTTTAGTACGG+TGG | - | chr2_2:64021305-64021324 | Msa0264190:intron | 35.0% |
| ATAAGAAACCTATAGTCGAG+TGG | - | chr2_2:64021485-64021504 | Msa0264190:CDS | 35.0% | |
| AACAAGATTTGCAGCAACTA+TGG | + | chr2_2:64021575-64021594 | None:intergenic | 35.0% | |
| CTTGTTCATGATGAGTTTCA+AGG | - | chr2_2:64021589-64021608 | Msa0264190:CDS | 35.0% | |
| TTTCAAGGAAGTTCTTCCTT+TGG | - | chr2_2:64021604-64021623 | Msa0264190:CDS | 35.0% | |
| !!! | AGTTTTTAGAGTTCAGTCAG+GGG | - | chr2_2:64021780-64021799 | Msa0264190:five_prime_UTR | 35.0% |
| !! | AGAAGAAAGGGTGTTGAGAA+TGG | + | chr2_2:64019573-64019592 | None:intergenic | 40.0% |
| GAAGGAGATGGAAGAAGAAA+GGG | + | chr2_2:64019585-64019604 | None:intergenic | 40.0% | |
| AGAAGGAGATGGAAGAAGAA+AGG | + | chr2_2:64019586-64019605 | None:intergenic | 40.0% | |
| TCCATCTCCTTCTCCATTTA+TGG | - | chr2_2:64019593-64019612 | Msa0264190:three_prime_UTR | 40.0% | |
| TCCATAAATGGAGAAGGAGA+TGG | + | chr2_2:64019597-64019616 | None:intergenic | 40.0% | |
| ! | AAGATTGGAGTACTTGGAGA+AGG | + | chr2_2:64019720-64019739 | None:intergenic | 40.0% |
| ! | TGCATCAAGATTGGAGTACT+TGG | + | chr2_2:64019726-64019745 | None:intergenic | 40.0% |
| ATGCTTCTCTGCATCAAGAT+TGG | + | chr2_2:64019735-64019754 | None:intergenic | 40.0% | |
| GAGTCCCATTATTGTACTGA+AGG | + | chr2_2:64019770-64019789 | None:intergenic | 40.0% | |
| TTCAGCAAAAAAAGCGGAGA+GGG | + | chr2_2:64019802-64019821 | None:intergenic | 40.0% | |
| ATTCAGCAAAAAAAGCGGAG+AGG | + | chr2_2:64019803-64019822 | None:intergenic | 40.0% | |
| TGCATTTCTTTAGGTACGCT+TGG | + | chr2_2:64020143-64020162 | None:intergenic | 40.0% | |
| ! | TCATGCAACGTTTTTCACAG+AGG | - | chr2_2:64020267-64020286 | Msa0264190:intron | 40.0% |
| GCAACATAATCATCATCACG+TGG | - | chr2_2:64020301-64020320 | Msa0264190:intron | 40.0% | |
| ACAGAAGAAAGAGGAATCAG+AGG | - | chr2_2:64020420-64020439 | Msa0264190:intron | 40.0% | |
| ATGGACAGAACTGTACAAAG+AGG | - | chr2_2:64020633-64020652 | Msa0264190:intron | 40.0% | |
| CTTGGAGAACAGAATCAATC+AGG | - | chr2_2:64021020-64021039 | Msa0264190:intron | 40.0% | |
| !! | TATAACTGGTTTGGCAACAC+CGG | + | chr2_2:64021195-64021214 | None:intergenic | 40.0% |
| GTATGTTTGCCGAAAGACAT+TGG | - | chr2_2:64021411-64021430 | Msa0264190:intron | 40.0% | |
| TCTCTCCCAGCTGAATAACT+CGG | - | chr2_2:64019659-64019678 | Msa0264190:three_prime_UTR | 45.0% | |
| CAACTCCGAGTTATTCAGCT+GGG | + | chr2_2:64019667-64019686 | None:intergenic | 45.0% | |
| TCAACTCCGAGTTATTCAGC+TGG | + | chr2_2:64019668-64019687 | None:intergenic | 45.0% | |
| AATAACTCGGAGTTGAGCAG+TGG | - | chr2_2:64019672-64019691 | Msa0264190:exon | 45.0% | |
| AAAAAGCGGAGAGGGGATAA+TGG | + | chr2_2:64019794-64019813 | None:intergenic | 45.0% | |
| TCAGCAAAAAAAGCGGAGAG+GGG | + | chr2_2:64019801-64019820 | None:intergenic | 45.0% | |
| GTACTGCAAACTTTCCTCAC+TGG | + | chr2_2:64019846-64019865 | None:intergenic | 45.0% | |
| GTGAGGAAAGTTTGCAGTAC+CGG | - | chr2_2:64019846-64019865 | Msa0264190:CDS | 45.0% | |
| ATAGTGTACCTGCAAATCGC+CGG | + | chr2_2:64019868-64019887 | None:intergenic | 45.0% | |
| CTCCATTCCTGTCAAGATCT+TGG | - | chr2_2:64021002-64021021 | Msa0264190:CDS | 45.0% | |
| CTCCAAGATCTTGACAGGAA+TGG | + | chr2_2:64021007-64021026 | None:intergenic | 45.0% | |
| CTGTTCTCCAAGATCTTGAC+AGG | + | chr2_2:64021012-64021031 | None:intergenic | 45.0% | |
| TGTTTGCCGAAAGACATTGG+CGG | - | chr2_2:64021414-64021433 | Msa0264190:intron | 45.0% | |
| TCCTATCCGCCAATGTCTTT+CGG | + | chr2_2:64021423-64021442 | None:intergenic | 45.0% | |
| AGCAGTGGCTATAGCAGCTA+TGG | - | chr2_2:64019687-64019706 | Msa0264190:CDS | 50.0% | |
| AGTGGCTATAGCAGCTATGG+TGG | - | chr2_2:64019690-64019709 | Msa0264190:CDS | 50.0% | |
| CTTATGCATGCTACCTCCAC+AGG | - | chr2_2:64020717-64020736 | Msa0264190:intron | 50.0% | |
| ! | GAAAGACATTGGCGGATAGG+AGG | - | chr2_2:64021422-64021441 | Msa0264190:intron | 50.0% |
| GGATAGGAGGCCACGAATTA+GGG | - | chr2_2:64021435-64021454 | Msa0264190:intron | 50.0% | |
| GATAGGAGGCCACGAATTAG+GGG | - | chr2_2:64021436-64021455 | Msa0264190:intron | 50.0% | |
| GCAAAACGTCCCCTAATTCG+TGG | + | chr2_2:64021448-64021467 | None:intergenic | 50.0% | |
| ATGTGGCTCCACTCGACTAT+AGG | + | chr2_2:64021496-64021515 | None:intergenic | 50.0% | |
| ATAGTCGAGTGGAGCCACAT+TGG | - | chr2_2:64021496-64021515 | Msa0264190:CDS | 50.0% | |
| !! | TCAGCTGGGAGAGAGTGTCT+TGG | + | chr2_2:64019653-64019672 | None:intergenic | 55.0% |
| ACTCAGACGATGCTCCAGTG+AGG | - | chr2_2:64019829-64019848 | Msa0264190:CDS | 55.0% | |
| !! | TTGCAGTACCGGCGATTTGC+AGG | - | chr2_2:64019857-64019876 | Msa0264190:CDS | 55.0% |
| ! | GCCGAAAGACATTGGCGGAT+AGG | - | chr2_2:64021419-64021438 | Msa0264190:intron | 55.0% |
| CGGATAGGAGGCCACGAATT+AGG | - | chr2_2:64021434-64021453 | Msa0264190:intron | 55.0% | |
| ! | AGTGGAGCCACATTGGTGGT+GGG | - | chr2_2:64021503-64021522 | Msa0264190:CDS | 55.0% |
| GTGGCAGTGTCTACCTGTGG+AGG | + | chr2_2:64020733-64020752 | None:intergenic | 60.0% | |
| CCAGTGGCAGTGTCTACCTG+TGG | + | chr2_2:64020736-64020755 | None:intergenic | 60.0% | |
| CCACAGGTAGACACTGCCAC+TGG | - | chr2_2:64020733-64020752 | Msa0264190:intron | 60.0% | |
| GTCGAGTGGAGCCACATTGG+TGG | - | chr2_2:64021499-64021518 | Msa0264190:CDS | 60.0% | |
| GAGTGGAGCCACATTGGTGG+TGG | - | chr2_2:64021502-64021521 | Msa0264190:CDS | 60.0% | |
| !! | GTGGAGCCACATTGGTGGTG+GGG | - | chr2_2:64021504-64021523 | Msa0264190:CDS | 60.0% |
| CTTCCTCCCCACCACCAATG+TGG | + | chr2_2:64021513-64021532 | None:intergenic | 60.0% | |
| !! | CATTGGTGGTGGGGAGGAAG+AGG | - | chr2_2:64021513-64021532 | Msa0264190:CDS | 60.0% |
| !! | GAGCCACATTGGTGGTGGGG+AGG | - | chr2_2:64021507-64021526 | Msa0264190:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 64019402 | 64021917 | 64019402 | ID=Msa0264190;Name=Msa0264190 |
| chr2_2 | mRNA | 64019402 | 64021917 | 64019402 | ID=Msa0264190-mRNA-1;Parent=Msa0264190;Name=Msa0264190-mRNA-1;_AED=0.17;_eAED=0.17;_QI=138|1|1|1|1|1|3|278|247 |
| chr2_2 | exon | 64019402 | 64019907 | 64019402 | ID=Msa0264190-mRNA-1:exon:19942;Parent=Msa0264190-mRNA-1 |
| chr2_2 | exon | 64020856 | 64021032 | 64020856 | ID=Msa0264190-mRNA-1:exon:19941;Parent=Msa0264190-mRNA-1 |
| chr2_2 | exon | 64021441 | 64021917 | 64021441 | ID=Msa0264190-mRNA-1:exon:19940;Parent=Msa0264190-mRNA-1 |
| chr2_2 | five_prime_UTR | 64021780 | 64021917 | 64021780 | ID=Msa0264190-mRNA-1:five_prime_utr;Parent=Msa0264190-mRNA-1 |
| chr2_2 | CDS | 64021441 | 64021779 | 64021441 | ID=Msa0264190-mRNA-1:cds;Parent=Msa0264190-mRNA-1 |
| chr2_2 | CDS | 64020856 | 64021032 | 64020856 | ID=Msa0264190-mRNA-1:cds;Parent=Msa0264190-mRNA-1 |
| chr2_2 | CDS | 64019680 | 64019907 | 64019680 | ID=Msa0264190-mRNA-1:cds;Parent=Msa0264190-mRNA-1 |
| chr2_2 | three_prime_UTR | 64019402 | 64019679 | 64019402 | ID=Msa0264190-mRNA-1:three_prime_utr;Parent=Msa0264190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
