Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222650 | XP_003597300.2 | 95.618 | 251 | 7 | 2 | 1 | 247 | 1 | 251 | 4.99e-173 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222650 | Q2HU26 | 95.618 | 251 | 7 | 2 | 1 | 247 | 1 | 251 | 2.38e-173 | 486 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0222650 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222650 | Msa0264190 | 0.824723 | 6.914506e-54 | -8.615850e-47 |
| Msa0222650 | Msa0391000 | 0.882556 | 9.436193e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222650 | MtrunA17_Chr2g0327621 | 95.618 | 251 | 7 | 2 | 1 | 247 | 1 | 251 | 4.59e-177 | 486 |
| Msa0222650 | MtrunA17_Chr4g0030421 | 65.909 | 132 | 43 | 2 | 118 | 247 | 1 | 132 | 9.32e-50 | 159 |
| Msa0222650 | MtrunA17_Chr8g0387241 | 48.101 | 158 | 62 | 7 | 55 | 202 | 132 | 279 | 8.72e-29 | 110 |
| Msa0222650 | MtrunA17_Chr5g0397361 | 43.860 | 114 | 43 | 2 | 87 | 200 | 130 | 222 | 4.51e-21 | 89.0 |
| Msa0222650 | MtrunA17_Chr1g0186171 | 46.000 | 100 | 47 | 2 | 102 | 196 | 264 | 361 | 3.42e-20 | 88.6 |
| Msa0222650 | MtrunA17_Chr2g0311591 | 47.059 | 102 | 35 | 2 | 142 | 243 | 161 | 243 | 4.84e-20 | 86.7 |
| Msa0222650 | MtrunA17_Chr1g0168401 | 43.878 | 98 | 51 | 1 | 103 | 196 | 267 | 364 | 3.40e-19 | 85.9 |
| Msa0222650 | MtrunA17_Chr4g0030411 | 51.807 | 83 | 36 | 1 | 33 | 115 | 29 | 107 | 1.61e-17 | 76.3 |
| Msa0222650 | MtrunA17_Chr1g0147111 | 32.867 | 143 | 79 | 4 | 62 | 199 | 150 | 280 | 2.37e-16 | 76.6 |
| Msa0222650 | MtrunA17_Chr3g0126721 | 57.692 | 52 | 22 | 0 | 147 | 198 | 226 | 277 | 4.43e-15 | 72.8 |
| Msa0222650 | MtrunA17_Chr1g0150471 | 42.188 | 64 | 37 | 0 | 140 | 203 | 244 | 307 | 2.74e-11 | 62.4 |
| Msa0222650 | MtrunA17_Chr4g0072871 | 44.262 | 61 | 31 | 1 | 137 | 197 | 287 | 344 | 4.44e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222650 | AT5G59990.1 | 52.899 | 138 | 52 | 2 | 66 | 203 | 91 | 215 | 1.70e-32 | 119 |
| Msa0222650 | AT5G41380.1 | 42.135 | 178 | 74 | 6 | 72 | 243 | 151 | 305 | 4.88e-30 | 114 |
| Msa0222650 | AT1G63820.1 | 47.581 | 124 | 56 | 2 | 103 | 221 | 139 | 258 | 8.62e-28 | 108 |
| Msa0222650 | AT1G04500.3 | 35.632 | 174 | 81 | 5 | 34 | 196 | 171 | 324 | 4.69e-24 | 99.4 |
| Msa0222650 | AT1G04500.4 | 35.632 | 174 | 81 | 5 | 34 | 196 | 180 | 333 | 5.06e-24 | 99.4 |
| Msa0222650 | AT1G04500.1 | 35.632 | 174 | 81 | 5 | 34 | 196 | 180 | 333 | 5.06e-24 | 99.4 |
| Msa0222650 | AT2G33350.4 | 46.535 | 101 | 47 | 2 | 103 | 196 | 244 | 344 | 2.56e-23 | 97.8 |
| Msa0222650 | AT2G33350.2 | 46.535 | 101 | 47 | 2 | 103 | 196 | 255 | 355 | 2.79e-23 | 97.8 |
| Msa0222650 | AT2G33350.5 | 46.535 | 101 | 47 | 2 | 103 | 196 | 264 | 364 | 3.65e-23 | 97.4 |
| Msa0222650 | AT2G33350.1 | 46.078 | 102 | 47 | 3 | 103 | 196 | 255 | 356 | 4.56e-22 | 94.4 |
| Msa0222650 | AT3G12890.1 | 54.651 | 86 | 38 | 1 | 131 | 215 | 119 | 204 | 1.01e-21 | 90.9 |
| Msa0222650 | AT5G53420.2 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 2.69e-16 | 75.1 |
| Msa0222650 | AT5G53420.5 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 2.69e-16 | 75.1 |
| Msa0222650 | AT5G53420.4 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 2.69e-16 | 75.1 |
| Msa0222650 | AT5G53420.1 | 34.884 | 129 | 68 | 4 | 68 | 195 | 149 | 262 | 4.49e-16 | 75.9 |
| Msa0222650 | AT5G59990.2 | 45.872 | 109 | 46 | 2 | 66 | 174 | 91 | 186 | 3.65e-15 | 72.0 |
| Msa0222650 | AT4G27900.1 | 32.787 | 122 | 59 | 3 | 100 | 198 | 140 | 261 | 1.21e-14 | 72.0 |
| Msa0222650 | AT4G27900.2 | 32.787 | 122 | 59 | 3 | 100 | 198 | 140 | 261 | 1.21e-14 | 72.0 |
| Msa0222650 | AT2G24790.1 | 43.056 | 72 | 37 | 1 | 125 | 192 | 199 | 270 | 4.58e-11 | 62.0 |
| Msa0222650 | AT5G15850.1 | 45.283 | 53 | 29 | 0 | 147 | 199 | 282 | 334 | 5.14e-11 | 62.4 |
| Msa0222650 | AT5G24930.1 | 43.333 | 60 | 34 | 0 | 139 | 198 | 283 | 342 | 8.15e-11 | 61.6 |
Find 66 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCTCCTTCTCCATTTA+TGG | 0.057189 | 2_1:-71935827 | Msa0222650:CDS |
| ATTCTCACTTTCTTCTCTTC+TGG | 0.076177 | 2_1:+71935028 | None:intergenic |
| CGGATAGGAGGCCACGAATT+AGG | 0.208419 | 2_1:-71933970 | Msa0222650:CDS |
| TTCTCACTTTCTTCTCTTCT+GGG | 0.251110 | 2_1:+71935029 | None:intergenic |
| TTCTTCTCTTCTGGGCTATA+TGG | 0.254110 | 2_1:+71935037 | None:intergenic |
| GAACTTTAACAAGAAAATTA+AGG | 0.269338 | 2_1:-71934975 | Msa0222650:intron |
| GGATAGGAGGCCACGAATTA+GGG | 0.287165 | 2_1:-71933969 | Msa0222650:CDS |
| AGGATGAAGAAGATGAAAAT+TGG | 0.295769 | 2_1:-71933871 | Msa0222650:CDS |
| AACAAGATTTGCAGCAACTA+TGG | 0.316149 | 2_1:+71933832 | None:intergenic |
| CATTCCCTTCAGTACAATAA+TGG | 0.321357 | 2_1:-71935658 | Msa0222650:CDS |
| TCAGGGATATGTTCCATAAA+TGG | 0.329934 | 2_1:+71935814 | None:intergenic |
| TTGCAGTACCGGCGATTTGC+AGG | 0.339328 | 2_1:-71935563 | Msa0222650:intron |
| TTTCAAGGAAGTTCTTCCTT+TGG | 0.354729 | 2_1:-71933800 | Msa0222650:CDS |
| GAGTCTAACTCATTGAAATC+AGG | 0.374546 | 2_1:+71935796 | None:intergenic |
| CTTGTTCATGATGAGTTTCA+AGG | 0.385277 | 2_1:-71933815 | Msa0222650:CDS |
| TCCTATCCGCCAATGTCTTT+CGG | 0.395899 | 2_1:+71933984 | None:intergenic |
| TGTATTATTGAATCAAACTT+TGG | 0.409644 | 2_1:-71933539 | Msa0222650:three_prime_UTR |
| ATGTGGCTCCACTCGACTAT+AGG | 0.414777 | 2_1:+71933911 | None:intergenic |
| GAAAGTAGTATGATCATAGA+AGG | 0.422699 | 2_1:-71935076 | Msa0222650:CDS |
| ATTCCCTTCAGTACAATAAT+GGG | 0.429789 | 2_1:-71935657 | Msa0222650:CDS |
| TGCATCAAGATTGGAGTACT+TGG | 0.434559 | 2_1:+71935697 | None:intergenic |
| ATGCTCCTCTGCATCAAGAT+TGG | 0.438379 | 2_1:+71935688 | None:intergenic |
| CATTGGTGGTGGGGAGGAAG+AGG | 0.451326 | 2_1:-71933891 | Msa0222650:CDS |
| GAAGGAGATGGAAGAAGAAA+GGG | 0.457613 | 2_1:+71935838 | None:intergenic |
| AGAAGGAGATGGAAGAAGAA+AGG | 0.460726 | 2_1:+71935837 | None:intergenic |
| AGAAGAAAGGGTGTTGAGAA+TGG | 0.469563 | 2_1:+71935850 | None:intergenic |
| GAGTGGAGCCACATTGGTGG+TGG | 0.477837 | 2_1:-71933902 | Msa0222650:CDS |
| GTGAGGAAAGTTTGCAGTAC+CGG | 0.479206 | 2_1:-71935574 | Msa0222650:CDS |
| TTGAAAGATACAGAAGAAAG+AGG | 0.482706 | 2_1:-71935006 | Msa0222650:CDS |
| AATGAAATGTCAAGTGTGTA+TGG | 0.491009 | 2_1:+71935969 | None:intergenic |
| TGTTGAGAATGGAATATTGT+TGG | 0.508851 | 2_1:+71935861 | None:intergenic |
| AGTGGAGCCACATTGGTGGT+GGG | 0.516680 | 2_1:-71933901 | Msa0222650:CDS |
| GCTCGACTCAGACGATGCTC+CGG | 0.525201 | 2_1:-71935596 | Msa0222650:CDS |
| GCAAAACGTCCCCTAATTCG+TGG | 0.530988 | 2_1:+71933959 | None:intergenic |
| AGCAGTGGCTATAGTAGCTA+TGG | 0.535103 | 2_1:-71935733 | Msa0222650:CDS |
| AGTCTAACTCATTGAAATCA+GGG | 0.536173 | 2_1:+71935797 | None:intergenic |
| GAGTCCCATTATTGTACTGA+AGG | 0.542232 | 2_1:+71935653 | None:intergenic |
| GTCGAGTGGAGCCACATTGG+TGG | 0.548825 | 2_1:-71933905 | Msa0222650:CDS |
| GCCGAAAGACATTGGCGGAT+AGG | 0.550818 | 2_1:-71933985 | Msa0222650:CDS |
| ACAGAAGAAAGAGGAATCAG+AGG | 0.553930 | 2_1:-71934997 | Msa0222650:CDS |
| GTATGTTTGCCGAAAGACAT+TGG | 0.562441 | 2_1:-71933993 | Msa0222650:CDS |
| GAGCCACATTGGTGGTGGGG+AGG | 0.566927 | 2_1:-71933897 | Msa0222650:CDS |
| GAAAGACATTGGCGGATAGG+AGG | 0.570627 | 2_1:-71933982 | Msa0222650:CDS |
| TCCATAAATGGAGAAGGAGA+TGG | 0.571408 | 2_1:+71935826 | None:intergenic |
| GTGGAGCCACATTGGTGGTG+GGG | 0.572282 | 2_1:-71933900 | Msa0222650:CDS |
| TCAACTCCGAGTTATTCAGC+TGG | 0.581544 | 2_1:+71935755 | None:intergenic |
| TCAGCTGGGAGAGAGTGTCT+TGG | 0.586821 | 2_1:+71935770 | None:intergenic |
| GTACTCCAATCTTGATGCAG+AGG | 0.591070 | 2_1:-71935693 | Msa0222650:CDS |
| ATACTACTTTCACTAGACAA+TGG | 0.602525 | 2_1:+71935088 | None:intergenic |
| AAGATTGGAGTACTTGGAGA+AGG | 0.605160 | 2_1:+71935703 | None:intergenic |
| CAACTCCGAGTTATTCAGCT+GGG | 0.608456 | 2_1:+71935756 | None:intergenic |
| CTTCCTCCCCACCACCAATG+TGG | 0.613096 | 2_1:+71933894 | None:intergenic |
| ATATGTTCCATAAATGGAGA+AGG | 0.614198 | 2_1:+71935820 | None:intergenic |
| GTACTGCAAACTTTCCTCAC+CGG | 0.616956 | 2_1:+71935577 | None:intergenic |
| AGTCCCATTATTGTACTGAA+GGG | 0.624751 | 2_1:+71935654 | None:intergenic |
| ATTCTAATATAATAGACCAA+AGG | 0.637951 | 2_1:+71933784 | None:intergenic |
| GATAGGAGGCCACGAATTAG+GGG | 0.642140 | 2_1:-71933968 | Msa0222650:CDS |
| ATAGTGTACCTGCAAATCGC+CGG | 0.645719 | 2_1:+71935555 | None:intergenic |
| AGTGGCTATAGTAGCTATGG+TGG | 0.656066 | 2_1:-71935730 | Msa0222650:CDS |
| ATAGTCGAGTGGAGCCACAT+TGG | 0.657395 | 2_1:-71933908 | Msa0222650:CDS |
| TCTCTCCCAGCTGAATAACT+CGG | 0.662391 | 2_1:-71935761 | Msa0222650:CDS |
| ATAAGAAACCTATAGTCGAG+TGG | 0.670337 | 2_1:-71933919 | Msa0222650:CDS |
| ACTCAGACGATGCTCCGGTG+AGG | 0.675434 | 2_1:-71935591 | Msa0222650:CDS |
| AATAACTCGGAGTTGAGCAG+TGG | 0.681830 | 2_1:-71935748 | Msa0222650:CDS |
| TGTTTGCCGAAAGACATTGG+CGG | 0.695673 | 2_1:-71933990 | Msa0222650:CDS |
| GCAACATAATCATCATCACG+TGG | 0.724747 | 2_1:-71935116 | Msa0222650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACATTTTTTTTTTTTG+CGG | + | chr2_1:71934211-71934230 | None:intergenic | 10.0% |
| !!! | TATTTAAGAATGTTTTTTTA+AGG | - | chr2_1:71934317-71934336 | Msa0222650:intron | 10.0% |
| !!! | ATTTAAGAATGTTTTTTTAA+GGG | - | chr2_1:71934318-71934337 | Msa0222650:intron | 10.0% |
| !!! | CGTTAAACTTTTTTTTTTTT+TGG | - | chr2_1:71934049-71934068 | Msa0222650:intron | 15.0% |
| !! | TTAAAAAAACTATGAATTTG+TGG | + | chr2_1:71934141-71934160 | None:intergenic | 15.0% |
| !!! | GAGTATATTGTTATTAATAA+GGG | + | chr2_1:71935166-71935185 | None:intergenic | 15.0% |
| !!! | GTACAATAATACTTTAAAAA+TGG | + | chr2_1:71935804-71935823 | None:intergenic | 15.0% |
| !!! | TCGCATTTTAATAATTTTAG+AGG | - | chr2_1:71934014-71934033 | Msa0222650:intron | 20.0% |
| !! | TGCAATTAAGGTTTAAATAA+TGG | + | chr2_1:71934112-71934131 | None:intergenic | 20.0% |
| !! | GAACTTTAACAAGAAAATTA+AGG | - | chr2_1:71934544-71934563 | Msa0222650:intron | 20.0% |
| !! | TTAGTGTATGAAAGTTAAAT+TGG | + | chr2_1:71934678-71934697 | None:intergenic | 20.0% |
| !! | ATAAAAAGAACAAGAAGTAA+TGG | - | chr2_1:71934716-71934735 | Msa0222650:intron | 20.0% |
| !! | TGATAGAAAATTTCATAAAG+GGG | + | chr2_1:71934780-71934799 | None:intergenic | 20.0% |
| !! | GTGATAGAAAATTTCATAAA+GGG | + | chr2_1:71934781-71934800 | None:intergenic | 20.0% |
| !! | AGTGATAGAAAATTTCATAA+AGG | + | chr2_1:71934782-71934801 | None:intergenic | 20.0% |
| !! | TGGTGAAAAAATAAATTCAT+TGG | - | chr2_1:71934855-71934874 | Msa0222650:intron | 20.0% |
| !!! | GGAGTATATTGTTATTAATA+AGG | + | chr2_1:71935167-71935186 | None:intergenic | 20.0% |
| !!! | ACAGTATACATTTTTTTTGA+AGG | + | chr2_1:71935221-71935240 | None:intergenic | 20.0% |
| !! | TACAAATTATTGTCATATAG+TGG | - | chr2_1:71935387-71935406 | Msa0222650:intron | 20.0% |
| !! | ATTCTAATATAATAGACCAA+AGG | + | chr2_1:71935738-71935757 | None:intergenic | 20.0% |
| !!! | TTTTAAAGTATTATTGTACG+TGG | - | chr2_1:71935805-71935824 | Msa0222650:CDS | 20.0% |
| !! | AAGTCCTATAAAAAGATATA+GGG | + | chr2_1:71935943-71935962 | None:intergenic | 20.0% |
| !! | TAAGTCCTATAAAAAGATAT+AGG | + | chr2_1:71935944-71935963 | None:intergenic | 20.0% |
| !! | TGTATTATTGAATCAAACTT+TGG | - | chr2_1:71935980-71935999 | Msa0222650:five_prime_UTR | 20.0% |
| ! | AAAACTTTGTGCATTTCTTT+AGG | + | chr2_1:71934259-71934278 | None:intergenic | 25.0% |
| !!! | TGAATTTATTTTTTCACCAG+TGG | + | chr2_1:71934854-71934873 | None:intergenic | 25.0% |
| ! | AACTAATTACGCATGTATAA+GGG | + | chr2_1:71934892-71934911 | None:intergenic | 25.0% |
| ! | TAACTAATTACGCATGTATA+AGG | + | chr2_1:71934893-71934912 | None:intergenic | 25.0% |
| ! | ATACATGTACACTATGAATT+TGG | + | chr2_1:71935188-71935207 | None:intergenic | 25.0% |
| !!! | ATACTGTTTATTGATTCTAG+TGG | - | chr2_1:71935234-71935253 | Msa0222650:intron | 25.0% |
| ! | AATTTGTACTAAATAGCGTA+TGG | + | chr2_1:71935375-71935394 | None:intergenic | 25.0% |
| !! | AACTCTAAAAACTGCATATA+TGG | + | chr2_1:71935896-71935915 | None:intergenic | 25.0% |
| AATGAAATGTCAAGTGTGTA+TGG | + | chr2_1:71933553-71933572 | None:intergenic | 30.0% | |
| TGTTGAGAATGGAATATTGT+TGG | + | chr2_1:71933661-71933680 | None:intergenic | 30.0% | |
| ATATGTTCCATAAATGGAGA+AGG | + | chr2_1:71933702-71933721 | None:intergenic | 30.0% | |
| AGTCTAACTCATTGAAATCA+GGG | + | chr2_1:71933725-71933744 | None:intergenic | 30.0% | |
| ATTCCCTTCAGTACAATAAT+GGG | - | chr2_1:71933862-71933881 | Msa0222650:CDS | 30.0% | |
| !!! | ATTGTTTTAGATTGCAGTTG+CGG | - | chr2_1:71933991-71934010 | Msa0222650:CDS | 30.0% |
| ATACTACTTTCACTAGACAA+TGG | + | chr2_1:71934434-71934453 | None:intergenic | 30.0% | |
| GAAAGTAGTATGATCATAGA+AGG | - | chr2_1:71934443-71934462 | Msa0222650:intron | 30.0% | |
| TTGAAAGATACAGAAGAAAG+AGG | - | chr2_1:71934513-71934532 | Msa0222650:intron | 30.0% | |
| CAAAGAGGAAAATAAATGCA+TGG | - | chr2_1:71934750-71934769 | Msa0222650:intron | 30.0% | |
| CTAAAAGACACTTCAAATCA+TGG | + | chr2_1:71934998-71935017 | None:intergenic | 30.0% | |
| CCTAAATGGTAGTATAATGA+TGG | + | chr2_1:71935261-71935280 | None:intergenic | 30.0% | |
| CCATCATTATACTACCATTT+AGG | - | chr2_1:71935258-71935277 | Msa0222650:intron | 30.0% | |
| ! | TCGAGTTTTTCATACCTAAA+TGG | + | chr2_1:71935275-71935294 | None:intergenic | 30.0% |
| AACTCGATTAGAATATTGAC+CGG | - | chr2_1:71935288-71935307 | Msa0222650:intron | 30.0% | |
| !! | AGCGTTATAGCATTTTAGTA+CGG | - | chr2_1:71935417-71935436 | Msa0222650:intron | 30.0% |
| AGGATGAAGAAGATGAAAAT+TGG | - | chr2_1:71935648-71935667 | Msa0222650:CDS | 30.0% | |
| ! | AGTGCCCTATATCTTTTTAT+AGG | - | chr2_1:71935936-71935955 | Msa0222650:five_prime_UTR | 30.0% |
| TCAGGGATATGTTCCATAAA+TGG | + | chr2_1:71933708-71933727 | None:intergenic | 35.0% | |
| GAGTCTAACTCATTGAAATC+AGG | + | chr2_1:71933726-71933745 | None:intergenic | 35.0% | |
| CATTCCCTTCAGTACAATAA+TGG | - | chr2_1:71933861-71933880 | Msa0222650:CDS | 35.0% | |
| AGTCCCATTATTGTACTGAA+GGG | + | chr2_1:71933868-71933887 | None:intergenic | 35.0% | |
| GAGCAATTCAGCAAAAAAAG+CGG | + | chr2_1:71933907-71933926 | None:intergenic | 35.0% | |
| TTGTGGTTATGCTGCAATTA+AGG | + | chr2_1:71934124-71934143 | None:intergenic | 35.0% | |
| ! | CGTTTTTCACAGAGGATTAA+CGG | - | chr2_1:71934377-71934396 | Msa0222650:intron | 35.0% |
| TTCTCACTTTCTTCTCTTCT+GGG | + | chr2_1:71934493-71934512 | None:intergenic | 35.0% | |
| ATTCTCACTTTCTTCTCTTC+TGG | + | chr2_1:71934494-71934513 | None:intergenic | 35.0% | |
| ATGGACAAAACTGTACAAAG+AGG | - | chr2_1:71934735-71934754 | Msa0222650:intron | 35.0% | |
| TAGTCAGTGTATATAGCAAC+AGG | - | chr2_1:71935015-71935034 | Msa0222650:CDS | 35.0% | |
| ! | AACAGGTTCAGAATTTTGTG+AGG | - | chr2_1:71935032-71935051 | Msa0222650:CDS | 35.0% |
| GAGGTGTGAAAATCTTCTTA+CGG | - | chr2_1:71935051-71935070 | Msa0222650:CDS | 35.0% | |
| ! | TTGTTATTAATAAGGGCGTG+TGG | + | chr2_1:71935159-71935178 | None:intergenic | 35.0% |
| ! | TAGTGTTGCTATAACTGGTT+TGG | + | chr2_1:71935319-71935338 | None:intergenic | 35.0% |
| ! | GCTAATAGTGTTGCTATAAC+TGG | + | chr2_1:71935324-71935343 | None:intergenic | 35.0% |
| !! | GTTATAGCATTTTAGTACGG+TGG | - | chr2_1:71935420-71935439 | Msa0222650:intron | 35.0% |
| ATAAGAAACCTATAGTCGAG+TGG | - | chr2_1:71935600-71935619 | Msa0222650:CDS | 35.0% | |
| AACAAGATTTGCAGCAACTA+TGG | + | chr2_1:71935690-71935709 | None:intergenic | 35.0% | |
| CTTGTTCATGATGAGTTTCA+AGG | - | chr2_1:71935704-71935723 | Msa0222650:CDS | 35.0% | |
| TTTCAAGGAAGTTCTTCCTT+TGG | - | chr2_1:71935719-71935738 | Msa0222650:CDS | 35.0% | |
| !!! | CAGTTTTTAGAGTTCAGTCA+GGG | - | chr2_1:71935902-71935921 | Msa0222650:exon | 35.0% |
| !!! | AGTTTTTAGAGTTCAGTCAG+GGG | - | chr2_1:71935903-71935922 | Msa0222650:five_prime_UTR | 35.0% |
| !! | AGAAGAAAGGGTGTTGAGAA+TGG | + | chr2_1:71933672-71933691 | None:intergenic | 40.0% |
| GAAGGAGATGGAAGAAGAAA+GGG | + | chr2_1:71933684-71933703 | None:intergenic | 40.0% | |
| AGAAGGAGATGGAAGAAGAA+AGG | + | chr2_1:71933685-71933704 | None:intergenic | 40.0% | |
| TCCATCTCCTTCTCCATTTA+TGG | - | chr2_1:71933692-71933711 | Msa0222650:three_prime_UTR | 40.0% | |
| TCCATAAATGGAGAAGGAGA+TGG | + | chr2_1:71933696-71933715 | None:intergenic | 40.0% | |
| ! | AAGATTGGAGTACTTGGAGA+AGG | + | chr2_1:71933819-71933838 | None:intergenic | 40.0% |
| ! | TGCATCAAGATTGGAGTACT+TGG | + | chr2_1:71933825-71933844 | None:intergenic | 40.0% |
| GAGTCCCATTATTGTACTGA+AGG | + | chr2_1:71933869-71933888 | None:intergenic | 40.0% | |
| TTCAGCAAAAAAAGCGGAGA+GGG | + | chr2_1:71933901-71933920 | None:intergenic | 40.0% | |
| ATTCAGCAAAAAAAGCGGAG+AGG | + | chr2_1:71933902-71933921 | None:intergenic | 40.0% | |
| TGCATTTCTTTAGGTACGCT+TGG | + | chr2_1:71934250-71934269 | None:intergenic | 40.0% | |
| ! | TCATGCAACGTTTTTCACAG+AGG | - | chr2_1:71934369-71934388 | Msa0222650:intron | 40.0% |
| GCAACATAATCATCATCACG+TGG | - | chr2_1:71934403-71934422 | Msa0222650:intron | 40.0% | |
| TTCTTCTCTTCTGGGCTATA+TGG | + | chr2_1:71934485-71934504 | None:intergenic | 40.0% | |
| ACAGAAGAAAGAGGAATCAG+AGG | - | chr2_1:71934522-71934541 | Msa0222650:intron | 40.0% | |
| CTTGGAGAACAGAATCAATC+AGG | - | chr2_1:71935122-71935141 | Msa0222650:CDS | 40.0% | |
| !! | TATAACTGGTTTGGCAACAC+CGG | + | chr2_1:71935310-71935329 | None:intergenic | 40.0% |
| GTATGTTTGCCGAAAGACAT+TGG | - | chr2_1:71935526-71935545 | Msa0222650:intron | 40.0% | |
| !!! | GCAGTTTTTAGAGTTCAGTC+AGG | - | chr2_1:71935901-71935920 | Msa0222650:exon | 40.0% |
| TCTCTCCCAGCTGAATAACT+CGG | - | chr2_1:71933758-71933777 | Msa0222650:three_prime_UTR | 45.0% | |
| CAACTCCGAGTTATTCAGCT+GGG | + | chr2_1:71933766-71933785 | None:intergenic | 45.0% | |
| TCAACTCCGAGTTATTCAGC+TGG | + | chr2_1:71933767-71933786 | None:intergenic | 45.0% | |
| AATAACTCGGAGTTGAGCAG+TGG | - | chr2_1:71933771-71933790 | Msa0222650:exon | 45.0% | |
| AGCAGTGGCTATAGTAGCTA+TGG | - | chr2_1:71933786-71933805 | Msa0222650:exon | 45.0% | |
| AGTGGCTATAGTAGCTATGG+TGG | - | chr2_1:71933789-71933808 | Msa0222650:CDS | 45.0% | |
| GTACTCCAATCTTGATGCAG+AGG | - | chr2_1:71933826-71933845 | Msa0222650:CDS | 45.0% | |
| ATGCTCCTCTGCATCAAGAT+TGG | + | chr2_1:71933834-71933853 | None:intergenic | 45.0% | |
| AAAAAGCGGAGAGGGGATAA+TGG | + | chr2_1:71933893-71933912 | None:intergenic | 45.0% | |
| TCAGCAAAAAAAGCGGAGAG+GGG | + | chr2_1:71933900-71933919 | None:intergenic | 45.0% | |
| GTACTGCAAACTTTCCTCAC+CGG | + | chr2_1:71933945-71933964 | None:intergenic | 45.0% | |
| GTGAGGAAAGTTTGCAGTAC+CGG | - | chr2_1:71933945-71933964 | Msa0222650:CDS | 45.0% | |
| ATAGTGTACCTGCAAATCGC+CGG | + | chr2_1:71933967-71933986 | None:intergenic | 45.0% | |
| CTCCATTCCTGTCAAGATCT+TGG | - | chr2_1:71935104-71935123 | Msa0222650:CDS | 45.0% | |
| CTCCAAGATCTTGACAGGAA+TGG | + | chr2_1:71935109-71935128 | None:intergenic | 45.0% | |
| CTGTTCTCCAAGATCTTGAC+AGG | + | chr2_1:71935114-71935133 | None:intergenic | 45.0% | |
| TGTTTGCCGAAAGACATTGG+CGG | - | chr2_1:71935529-71935548 | Msa0222650:intron | 45.0% | |
| TCCTATCCGCCAATGTCTTT+CGG | + | chr2_1:71935538-71935557 | None:intergenic | 45.0% | |
| !!! | TTTAATTTTTAATTTTTTTG+CGG | + | chr2_1:71934176-71934195 | None:intergenic | 5.0% |
| CTTATGCATGCTACCTCCAC+AGG | - | chr2_1:71934819-71934838 | Msa0222650:intron | 50.0% | |
| ! | GAAAGACATTGGCGGATAGG+AGG | - | chr2_1:71935537-71935556 | Msa0222650:intron | 50.0% |
| GGATAGGAGGCCACGAATTA+GGG | - | chr2_1:71935550-71935569 | Msa0222650:intron | 50.0% | |
| GATAGGAGGCCACGAATTAG+GGG | - | chr2_1:71935551-71935570 | Msa0222650:intron | 50.0% | |
| GCAAAACGTCCCCTAATTCG+TGG | + | chr2_1:71935563-71935582 | None:intergenic | 50.0% | |
| ATGTGGCTCCACTCGACTAT+AGG | + | chr2_1:71935611-71935630 | None:intergenic | 50.0% | |
| ATAGTCGAGTGGAGCCACAT+TGG | - | chr2_1:71935611-71935630 | Msa0222650:CDS | 50.0% | |
| !! | TCAGCTGGGAGAGAGTGTCT+TGG | + | chr2_1:71933752-71933771 | None:intergenic | 55.0% |
| !! | TTGCAGTACCGGCGATTTGC+AGG | - | chr2_1:71933956-71933975 | Msa0222650:CDS | 55.0% |
| ! | GCCGAAAGACATTGGCGGAT+AGG | - | chr2_1:71935534-71935553 | Msa0222650:intron | 55.0% |
| CGGATAGGAGGCCACGAATT+AGG | - | chr2_1:71935549-71935568 | Msa0222650:intron | 55.0% | |
| ! | AGTGGAGCCACATTGGTGGT+GGG | - | chr2_1:71935618-71935637 | Msa0222650:CDS | 55.0% |
| GCTCGACTCAGACGATGCTC+CGG | - | chr2_1:71933923-71933942 | Msa0222650:CDS | 60.0% | |
| ACTCAGACGATGCTCCGGTG+AGG | - | chr2_1:71933928-71933947 | Msa0222650:CDS | 60.0% | |
| GTGGCAGTGTCTACCTGTGG+AGG | + | chr2_1:71934835-71934854 | None:intergenic | 60.0% | |
| CCAGTGGCAGTGTCTACCTG+TGG | + | chr2_1:71934838-71934857 | None:intergenic | 60.0% | |
| CCACAGGTAGACACTGCCAC+TGG | - | chr2_1:71934835-71934854 | Msa0222650:intron | 60.0% | |
| GTCGAGTGGAGCCACATTGG+TGG | - | chr2_1:71935614-71935633 | Msa0222650:CDS | 60.0% | |
| GAGTGGAGCCACATTGGTGG+TGG | - | chr2_1:71935617-71935636 | Msa0222650:CDS | 60.0% | |
| !! | GTGGAGCCACATTGGTGGTG+GGG | - | chr2_1:71935619-71935638 | Msa0222650:CDS | 60.0% |
| CTTCCTCCCCACCACCAATG+TGG | + | chr2_1:71935628-71935647 | None:intergenic | 60.0% | |
| !! | CATTGGTGGTGGGGAGGAAG+AGG | - | chr2_1:71935628-71935647 | Msa0222650:CDS | 60.0% |
| !! | GAGCCACATTGGTGGTGGGG+AGG | - | chr2_1:71935622-71935641 | Msa0222650:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 71933501 | 71936040 | 71933501 | ID=Msa0222650;Name=Msa0222650 |
| chr2_1 | mRNA | 71933501 | 71936040 | 71933501 | ID=Msa0222650-mRNA-1;Parent=Msa0222650;Name=Msa0222650-mRNA-1;_AED=0.17;_eAED=0.17;_QI=138|1|1|1|1|1|3|286|247 |
| chr2_1 | exon | 71933501 | 71934014 | 71933501 | ID=Msa0222650-mRNA-1:exon:20761;Parent=Msa0222650-mRNA-1 |
| chr2_1 | exon | 71934976 | 71935152 | 71934976 | ID=Msa0222650-mRNA-1:exon:20760;Parent=Msa0222650-mRNA-1 |
| chr2_1 | exon | 71935564 | 71936040 | 71935564 | ID=Msa0222650-mRNA-1:exon:20759;Parent=Msa0222650-mRNA-1 |
| chr2_1 | five_prime_UTR | 71935903 | 71936040 | 71935903 | ID=Msa0222650-mRNA-1:five_prime_utr;Parent=Msa0222650-mRNA-1 |
| chr2_1 | CDS | 71935564 | 71935902 | 71935564 | ID=Msa0222650-mRNA-1:cds;Parent=Msa0222650-mRNA-1 |
| chr2_1 | CDS | 71934976 | 71935152 | 71934976 | ID=Msa0222650-mRNA-1:cds;Parent=Msa0222650-mRNA-1 |
| chr2_1 | CDS | 71933787 | 71934014 | 71933787 | ID=Msa0222650-mRNA-1:cds;Parent=Msa0222650-mRNA-1 |
| chr2_1 | three_prime_UTR | 71933501 | 71933786 | 71933501 | ID=Msa0222650-mRNA-1:three_prime_utr;Parent=Msa0222650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
