AlfalfaGEDB | Msa0264850

M. sativa cultivar zhongmu-4 / Msa0264850

KEGG: K14514
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042762 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04873.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264850	XP_003597476.1	66.049	162	51	4	618	778	461	619	6.30e-56	214
Msa0264850	XP_003597476.1	87.660	624	33	6	1	588	1	616	0.0	1067

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264850	sp\|O23116\|EIL3_ARATH	55.962	520	197	9	1	510	1	498	3.34e-175	518

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264850	G7IUG2	66.049	162	51	4	618	778	461	619	3.01e-56	214
Msa0264850	G7IUG2	87.660	624	33	6	1	588	1	616	0.0	1067

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0264850	TF	EIL

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0264850	Msa0340320	0.821139	4.731191e-53	-8.615850e-47
Msa0264850	Msa0828260	0.876245	1.628299e-68	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264850	MtrunA17_Chr2g0329151	87.660	624	33	6	1	588	1	616	0.0	1067
Msa0264850	MtrunA17_Chr2g0329151	66.049	162	51	4	618	778	461	619	5.80e-60	214
Msa0264850	MtrunA17_Chr5g0440591	63.312	308	102	4	24	329	35	333	1.31e-130	402
Msa0264850	MtrunA17_Chr3g0118361	63.946	294	92	4	39	330	53	334	1.64e-123	384
Msa0264850	MtrunA17_Chr2g0329141	87.845	181	15	3	598	778	9	182	2.82e-103	315
Msa0264850	MtrunA17_Chr2g0329141	59.589	146	44	4	453	588	39	179	1.35e-47	167
Msa0264850	MtrunA17_Chr3g0124291	58.238	261	94	5	35	288	29	281	3.62e-97	308
Msa0264850	MtrunA17_Chr8g0382561	56.716	268	94	6	32	288	16	272	1.28e-92	297
Msa0264850	MtrunA17_Chr6g0473191	59.000	200	79	2	94	290	1	200	5.68e-78	253
Msa0264850	MtrunA17_Chr6g0476291	58.500	200	80	2	94	290	1	200	1.86e-77	251

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264850	AT1G73730.1	55.962	520	197	9	1	510	1	498	3.39e-176	518
Msa0264850	AT1G73730.2	56.660	503	186	9	18	510	6	486	6.23e-174	511
Msa0264850	AT3G20770.1	63.072	306	102	4	24	327	35	331	5.06e-127	393
Msa0264850	AT2G27050.1	67.778	270	81	4	25	290	36	303	1.98e-126	390
Msa0264850	AT5G10120.1	55.849	265	110	3	29	288	14	276	1.01e-94	303
Msa0264850	AT5G21120.2	49.691	324	136	8	31	340	48	358	2.53e-89	291
Msa0264850	AT5G21120.3	49.691	324	136	8	31	340	41	351	4.45e-89	290
Msa0264850	AT5G21120.1	49.691	324	136	8	31	340	41	351	4.45e-89	290
Msa0264850	AT5G65100.1	52.190	274	112	4	33	288	33	305	2.37e-88	290

Showing 1 to 9 of 9 entries

Previous1Next

Find 215 sgRNAs with CRISPR-Local

Find 565 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGAATGTGAGTGGA+AGG	0.640633	2_2:-64922778	Msa0264850:CDS
AAAACTCCAAAATCTAATAA+TGG	0.379865	2_2:+64928271	None:intergenic
AAAAGGAATGATGGTGATGG+TGG	0.555478	2_2:+64928241	None:intergenic
AAAAGGAATGGCGGTGATGG+TGG	0.563585	2_2:+64922434	None:intergenic
AAAAGGGTGTTCCTCCGCCT+TGG	0.490659	2_2:-64929446	Msa0264850:CDS
AAAATGAAAGGAACCCAAAA+AGG	0.250888	2_2:+64931071	None:intergenic
AAAATGTCGAGGGCACAAGA+TGG	0.611433	2_2:-64929792	Msa0264850:CDS
AAAGCTCGTGGATTTGTGTA+TGG	0.575890	2_2:-64929732	Msa0264850:CDS
AAAGGAAAGTTCAATTTGGT+TGG	0.458921	2_2:-64929223	Msa0264850:CDS
AAAGGTGACGAAATCACTGG+AGG	0.696560	2_2:-64922557	Msa0264850:CDS

Showing 1 to 10 of 215 entries

Previous1 2 3 4 5…22Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAAGGAACCCAAAAA+GGG	+	chr2_2:64922517-64922536	None:intergenic	30.0%
AAAATGAAAGGAACCCAAAA+AGG	+	chr2_2:64922518-64922537	None:intergenic	30.0%
TTGAAATTGGAGCTGATATT+GGG	-	chr2_2:64922656-64922675	Msa0264850:CDS	30.0%
ATCATGATTTGATCAAAACC+TGG	+	chr2_2:64922862-64922881	None:intergenic	30.0%
GTTGATTAGGTTAACTCTAT+TGG	-	chr2_2:64922903-64922922	Msa0264850:CDS	30.0%
TTAGTTTCCTCAATGTCATT+CGG	+	chr2_2:64923176-64923195	None:intergenic	30.0%
TGTTAAATTGGAAAGGATGT+CGG	-	chr2_2:64923238-64923257	Msa0264850:intron	30.0%
TTGAGAATTTGCAGAAATCA+CGG	-	chr2_2:64923299-64923318	Msa0264850:intron	30.0%
AACATTAAACTGCAAGCTAT+CGG	+	chr2_2:64923401-64923420	None:intergenic	30.0%
AGTACATCACATTTAATCAG+AGG	+	chr2_2:64923557-64923576	None:intergenic	30.0%

Showing 1 to 10 of 565 entries

Previous1 2 3 4 5…57Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	64922376	64931232	64922376	ID=Msa0264850;Name=Msa0264850
chr2_2	mRNA	64922376	64931232	64922376	ID=Msa0264850-mRNA-1;Parent=Msa0264850;Name=Msa0264850-mRNA-1;_AED=0.12;_eAED=0.13;_QI=267\|0.16\|0.14\|1\|0.16\|0.28\|7\|0\|778
chr2_2	exon	64922376	64922952	64922376	ID=Msa0264850-mRNA-1:exon:20334;Parent=Msa0264850-mRNA-1
chr2_2	exon	64928202	64928352	64928202	ID=Msa0264850-mRNA-1:exon:20333;Parent=Msa0264850-mRNA-1
chr2_2	exon	64928371	64928606	64928371	ID=Msa0264850-mRNA-1:exon:20332;Parent=Msa0264850-mRNA-1
chr2_2	exon	64928640	64928791	64928640	ID=Msa0264850-mRNA-1:exon:20331;Parent=Msa0264850-mRNA-1
chr2_2	exon	64928825	64929043	64928825	ID=Msa0264850-mRNA-1:exon:20330;Parent=Msa0264850-mRNA-1
chr2_2	exon	64929056	64930022	64929056	ID=Msa0264850-mRNA-1:exon:20329;Parent=Msa0264850-mRNA-1
chr2_2	exon	64930931	64931232	64930931	ID=Msa0264850-mRNA-1:exon:20328;Parent=Msa0264850-mRNA-1
chr2_2	five_prime_UTR	64930966	64931232	64930966	ID=Msa0264850-mRNA-1:five_prime_utr;Parent=Msa0264850-mRNA-1
chr2_2	CDS	64930931	64930965	64930931	ID=Msa0264850-mRNA-1:cds;Parent=Msa0264850-mRNA-1
chr2_2	CDS	64929056	64930022	64929056	ID=Msa0264850-mRNA-1:cds;Parent=Msa0264850-mRNA-1
chr2_2	CDS	64928825	64929043	64928825	ID=Msa0264850-mRNA-1:cds;Parent=Msa0264850-mRNA-1
chr2_2	CDS	64928640	64928791	64928640	ID=Msa0264850-mRNA-1:cds;Parent=Msa0264850-mRNA-1
chr2_2	CDS	64928371	64928606	64928371	ID=Msa0264850-mRNA-1:cds;Parent=Msa0264850-mRNA-1
chr2_2	CDS	64928202	64928352	64928202	ID=Msa0264850-mRNA-1:cds;Parent=Msa0264850-mRNA-1
chr2_2	CDS	64922376	64922952	64922376	ID=Msa0264850-mRNA-1:cds;Parent=Msa0264850-mRNA-1

Gene Sequence

>Msa0264850

ATGGGTGAACTCGTTGAAATTGGAGCTGATATTGGCTCAGATTTAGATGTCGACGATATTAGATATCACAATATTCCGGAGAAAGATGTCAGTGATGAAGAGATTGAGGCAGAAGATTTGGAGAGGCGGATGTGGAAGGATCGTATCAAACTCAAAAGGCTCAAGGAAAAACAAAAGCTTGCAGCACAGCAAGCCCTAGAGAAGCAAAAGCCGAGGCAGTCATCTGATCAAGCTCGTAGGAAGAAAATGTCGAGGGCACAAGATGGGATTCTTAAGTACATGCTGAAGCTCATGGAAGTGTGCAAAGCTCGTGGATTTGTGTATGGAATCATTCCTGAGAAGGGAAAACCAGTTAGTGGTTCCTCTGATAACATTAGAGCTTGGTGGAAAGAAAAGGTGAAGTTTGATAGGAATGGTCCTGCAGCCATAGCCAAGTATGAAGCAGAGTGTCTTGCTATGAGCGAGGCCGAAAATAACCGAAATGGGAACTCCCAGAGCACGCTCCAAGACCTGCAAGATGCAACGCTCGGGTCACTATTATCTTCTTTGATGCAACACTGTGATCCTCCTCAGAGGAAATATCCATTGGAAAAGGGTGTTCCTCCGCCTTGGTGGCCCACCGGGAATGAAGATTGGTGGTCGCACTTGAATCTACCTCATGGTCAGAGTCCTCCTTATAAGAAACCACATGACTTGAAGAAGATGTGGAAAGTGGGAGTGCTAACTGCTGTTATAAAGCACATGTCACCTGATATTGCAAAAATAAGGAGGCACGTCCGCCAATCAAAATGCTTGCAAGACAAGATGACGGCAAAGGAAAGTTCAATTTGGTTGGGGGTATTGAGTCGAGAAGAAGCTCTCATTAGGCAGCCTAGTAGCGATAACGGTACGTCTGGAATTACCGATATGCCAACTGGTGTTCTTCTTCTTGAGTATAAGCAACCTGCTGCTAGTAGTGCTAGCAACTATGATGTTGATGGTACCGACGATGGTGTTGGTTCTGAAGACAGGAGCAATCAGTTTATGGATGCCGAACCATCAGATAACTCGCGAAGGAATTCTGTCCAAGATTCCGATCGAGCTAAGAAGCAACCTAGGAAGAAACGACCACGTTCGAGGTCAAGTGCAGCCGACACATTACCAGCACAATCTGACAATGAAATTTTGCATGTTGAACCTAGAAGTAAACTGCCGAATATGAATGAGAGAGACGAAACACATGTCAATGAGACAGAATCTGTTTTGAGGCCGCCGGAAATAAGACATGAGGGGCCAAGTCATCTATCTGGAAGCGAGGTGCCAGTTCATTTATCAGGACATGAGTCAGTTCATTTATCAGGACACGGGGTGCCAGTTCATGTAACAGCACCCGGTATGATTTCCTCGGAAAGTGTGTATATGAGTAGACGGCCACCGCTGCACTATTCTCAGTTGCAAAACCCTGTTATGCCTCATGAAGCTGATTATAATCTGTACAATCCAGTCACAAGATATGGTCCCAGTCAGGATGGGCAACATCAACATCTGCAGCCTGGTCCCGCCGCGAACAGTGAACCAATTAGGCAACCAGAGAATGCTGCAATAACTATGCCTGCAGCAAATATGAATGGAGGCTTGAATTATCTTGCTAAAGACACATTCCCAAACGAGCTGGATAGGTTTGGATCACCATTATTAGATTTTGGAGTTTTTGAGAATCCACCATCACCATCATTCCTTTTTGATGATATCATGGGTTTGGGTGACGATGAAATGATGCAATTTGGAGAGGCGAATGTGGAAGGATCGTATCAAAGGCTCAAGGAAAAACAAAAGCTTGCAGCACAAGAAGCTGCAGAGAAGCAAAAACCAATGCCGTCTCAAGCACAAGATAATTACTCTTATATACATGCAAACAACATAGTTTCTTTGGAAAACATGAATGTGAGTGGAAGGCCATTGAACTACCCTTACTTGCAAAACCCTCCTGACATGCCACATGAAGCTGCTTATAATCTTGACCTTAGAGTCGCGGAATATGGTCCTCGTCAGGAGGGGCAGCAGCATCAGCATCTGCAGGCCAGCCCAGCCGTGAACATTGATCCAATTAGGCAGCCAGAGAATGGTGCAATCACTATGCCTGTAGCAAATATGAAAGGTGACGAAATCACTGGAGGAGACATAAATTATTTCGCTAAAGACGCATTCCAAAACGAGCTGGATAGGTTTGGATCACCAATCACTAACATGTCATTTGATTTTGGAGTTCTTGACAATCCACCATCACCGCCATTCCTTTTAGTTGATTTCATGGGCCCTATGAGTGACGATGAAATGATAAAGTACTTTGGCGGGTAG

Protein sequence

>Msa0264850

MGELVEIGADIGSDLDVDDIRYHNIPEKDVSDEEIEAEDLERRMWKDRIKLKRLKEKQKLAAQQALEKQKPRQSSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVKFDRNGPAAIAKYEAECLAMSEAENNRNGNSQSTLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPTGNEDWWSHLNLPHGQSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESSIWLGVLSREEALIRQPSSDNGTSGITDMPTGVLLLEYKQPAASSASNYDVDGTDDGVGSEDRSNQFMDAEPSDNSRRNSVQDSDRAKKQPRKKRPRSRSSAADTLPAQSDNEILHVEPRSKLPNMNERDETHVNETESVLRPPEIRHEGPSHLSGSEVPVHLSGHESVHLSGHGVPVHVTAPGMISSESVYMSRRPPLHYSQLQNPVMPHEADYNLYNPVTRYGPSQDGQHQHLQPGPAANSEPIRQPENAAITMPAANMNGGLNYLAKDTFPNELDRFGSPLLDFGVFENPPSPSFLFDDIMGLGDDEMMQFGEANVEGSYQRLKEKQKLAAQEAAEKQKPMPSQAQDNYSYIHANNIVSLENMNVSGRPLNYPYLQNPPDMPHEAAYNLDLRVAEYGPRQEGQQHQHLQASPAVNIDPIRQPENGAITMPVANMKGDEITGGDINYFAKDAFQNELDRFGSPITNMSFDFGVLDNPPSPPFLLVDFMGPMSDDEMIKYFGG*