AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0265040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265040 MtrunA17_Chr2g0329621 84.660 515 62 4 1 498 1 515 0.0 863
Msa0265040 MtrunA17_Chr5g0401081 30.568 458 260 11 48 465 43 482 2.09e-64 217
Msa0265040 MtrunA17_Chr1g0208531 23.517 489 314 14 20 467 53 522 6.83e-30 123
Msa0265040 MtrunA17_Chr3g0137351 22.407 482 287 15 44 469 67 517 1.08e-29 122
Msa0265040 MtrunA17_Chr2g0304631 21.649 485 314 15 30 469 54 517 1.39e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265040 AT5G67550.1 24.902 510 329 11 6 480 8 498 1.03e-49 178
Msa0265040 AT2G25270.1 23.667 469 297 15 44 469 75 525 1.14e-31 128
Msa0265040 AT2G12400.1 24.547 497 308 15 37 487 63 538 1.19e-29 122
Msa0265040 AT1G71110.1 22.016 486 322 12 25 469 51 520 1.06e-25 110
Msa0265040 AT1G80540.1 19.097 487 331 13 28 463 43 517 2.91e-16 82.0
Msa0265040 AT1G80540.3 18.856 472 330 12 33 463 12 471 4.51e-16 81.3

Find 98 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCACCAACAAGAATTAT+TGG 0.207437 2_2:-65258337 Msa0265040:CDS
ATGTTAGTGTAATATATATT+AGG 0.248865 2_2:+65255596 None:intergenic
TTGATATTCACTGGAGTATA+TGG 0.251671 2_2:-65258228 Msa0265040:CDS
TCGGGTTGGTAGGTATAATT+TGG 0.268119 2_2:+65256486 None:intergenic
TTGATTGCATCTAGTTAAAT+TGG 0.279468 2_2:-65259482 Msa0265040:intron
GAGCTTAAGCTGTTGTTATA+AGG 0.299992 2_2:+65256804 None:intergenic
AAAAGTTATACACGGATTAC+TGG 0.300423 2_2:+65255800 None:intergenic
ACAGGCTTGTTGTACTTTGC+TGG 0.301195 2_2:-65257023 Msa0265040:intron
GTATTATGCTGGCTATTCTT+TGG 0.304357 2_2:-65256991 Msa0265040:CDS
GGCTATTAACATGAGAAATA+TGG 0.305507 2_2:+65258050 None:intergenic
TTTAACTGCTCTTGATTTGA+AGG 0.331948 2_2:+65255936 None:intergenic
TTTGTATCCAAACAAGTAAA+AGG 0.335128 2_2:+65256288 None:intergenic
AACACAACAGAAGCATTAAA+AGG 0.338281 2_2:-65257790 Msa0265040:CDS
TGATGCTTTACTAATTCCTT+TGG 0.344919 2_2:-65258073 Msa0265040:CDS
ATTGAATGTGTATCCAAGTA+TGG 0.345176 2_2:-65256181 Msa0265040:CDS
AATTATACTCACTTCCTCTA+AGG 0.347425 2_2:+65255622 None:intergenic
GCTCTTGATTTGAAGGAATT+CGG 0.358857 2_2:+65255943 None:intergenic
GTTATTTCAATAGACCTTAG+AGG 0.363692 2_2:-65255636 Msa0265040:three_prime_UTR
ATCTTAGCATATTTCTTCAT+AGG 0.370043 2_2:+65256093 None:intergenic
TACACTCCAATAATTCTTGT+TGG 0.372190 2_2:+65258331 None:intergenic
CCTATTCGTATAGTATTATC+TGG 0.379970 2_2:+65256456 None:intergenic
GCAACAGGGCTAGTTCTTGT+AGG 0.391851 2_2:-65257895 Msa0265040:CDS
TATTTAGTTCATAAGAATAT+AGG 0.395510 2_2:-65255860 Msa0265040:three_prime_UTR
CAGCTTGTGCTTCAATTTGT+GGG 0.405144 2_2:+65259396 None:intergenic
AGTATTATCTGGACAATTCT+CGG 0.408061 2_2:+65256467 None:intergenic
CATACAAAATTCCACATAGA+AGG 0.413531 2_2:+65258184 None:intergenic
AGTCATGAACATTGTTATCA+TGG 0.416314 2_2:-65256000 Msa0265040:CDS
GGAGTATATGGATATGCAAT+TGG 0.424393 2_2:-65258216 Msa0265040:CDS
TTGTAGTCTTTGATATTCAC+TGG 0.425080 2_2:-65258237 Msa0265040:intron
TCTAACAAATGTTCCATACT+TGG 0.426331 2_2:+65256168 None:intergenic
CCAGATAATACTATACGAAT+AGG 0.430631 2_2:-65256456 Msa0265040:CDS
TGTTAGTGTAATATATATTA+GGG 0.433042 2_2:+65255597 None:intergenic
AAATTGTGACATGGTTCAGC+TGG 0.434571 2_2:-65259773 None:intergenic
ATTCAGTATACCTTATTTAG+TGG 0.439839 2_2:-65255766 Msa0265040:three_prime_UTR
AAGAATATAGGAACCGGTAT+TGG 0.441138 2_2:-65255848 Msa0265040:three_prime_UTR
ACTTGTTTGGATACAAATGA+TGG 0.450904 2_2:-65256282 Msa0265040:CDS
CATTGTTATCATGGTTCAGA+TGG 0.453877 2_2:-65255991 Msa0265040:CDS
TGGGTAGGAATGGTGTTCCT+TGG 0.455580 2_2:-65256066 Msa0265040:CDS
TATAATAGATACCAAGCCTT+TGG 0.456475 2_2:+65259439 None:intergenic
GATTTGTGTAGAGTTGCAAC+AGG 0.456871 2_2:-65257910 Msa0265040:intron
TTTCTGGTGTACTACGGTTA+AGG 0.464706 2_2:-65257163 Msa0265040:CDS
GGTGTTCCTTGGAGTGATCA+TGG 0.465850 2_2:-65256055 Msa0265040:CDS
GTTCATAAGAATATAGGAAC+CGG 0.468801 2_2:-65255854 Msa0265040:three_prime_UTR
ACAGCTTGTGCTTCAATTTG+TGG 0.469456 2_2:+65259395 None:intergenic
GCACTAAATTCAGATAGAAC+TGG 0.472426 2_2:+65256747 None:intergenic
TATGAAGAAATATGCTAAGA+TGG 0.477004 2_2:-65256091 Msa0265040:CDS
TCACCTGGTGATTCTGCTGC+AGG 0.478707 2_2:-65259371 Msa0265040:intron
TAATTTGGTGGCGCTGAGAA+AGG 0.479612 2_2:+65256501 None:intergenic
TTCAGTATACCTTATTTAGT+GGG 0.484635 2_2:-65255765 Msa0265040:three_prime_UTR
GTATTATCTGGACAATTCTC+GGG 0.490684 2_2:+65256468 None:intergenic
AGGCATGGAGAGTAACTTGA+TGG 0.496619 2_2:-65257770 Msa0265040:CDS
GTTCTATCTGAATTTAGTGC+TGG 0.497245 2_2:-65256744 Msa0265040:CDS
TTGCATCTAGTTAAATTGGC+AGG 0.500388 2_2:-65259478 Msa0265040:intron
CAACAGGGCTAGTTCTTGTA+GGG 0.506049 2_2:-65257894 Msa0265040:CDS
GGTTGTTGACAGTATTATGC+TGG 0.511614 2_2:-65257002 Msa0265040:CDS
TGAGCAATTCTTGACATGGA+AGG 0.514152 2_2:+65256778 None:intergenic
TATCTATAATCTTGTTAATG+AGG 0.517870 2_2:-65256721 Msa0265040:intron
TACTTGGATACACATTCAAT+AGG 0.517880 2_2:+65256184 None:intergenic
AGAAATATGCTAAGATGGCA+TGG 0.519247 2_2:-65256086 Msa0265040:CDS
GGTTGGTAGGTATAATTTGG+TGG 0.528341 2_2:+65256489 None:intergenic
GTCAGAACAGATTACACAAA+GGG 0.530197 2_2:-65258417 Msa0265040:CDS
CATAATCAAAACAGCAAACA+AGG 0.542949 2_2:-65257830 Msa0265040:CDS
AGAAGCCTCAACATTAACAT+TGG 0.547079 2_2:+65257744 None:intergenic
GAAGCACAAGCTGTCTCACC+TGG 0.551867 2_2:-65259386 Msa0265040:CDS
CTTGTTTGGATACAAATGAT+GGG 0.553416 2_2:-65256281 Msa0265040:CDS
ATTTCTTCATAGGCTTGCAA+TGG 0.560254 2_2:+65256103 None:intergenic
AACAGAAGCATTAAAAGGCA+TGG 0.560327 2_2:-65257785 Msa0265040:CDS
TTAAAGATGTTCATAGCCAA+AGG 0.561779 2_2:-65259455 Msa0265040:exon
GAACAGTTTCTGGTGTACTA+CGG 0.561972 2_2:-65257169 Msa0265040:intron
GATGTTCATAGCCAAAGGCT+TGG 0.569407 2_2:-65259450 Msa0265040:CDS
TATATACAAATGTTGCATGT+CGG 0.581404 2_2:+65255715 None:intergenic
TATCTGGACAATTCTCGGGT+TGG 0.582340 2_2:+65256472 None:intergenic
CTGGTGTACTACGGTTAAGG+AGG 0.583051 2_2:-65257160 Msa0265040:CDS
TGGACAATTCTCGGGTTGGT+AGG 0.583599 2_2:+65256476 None:intergenic
TCACAACTCTTGTAATTACA+AGG 0.584647 2_2:+65258093 None:intergenic
ATATAGGAACCGGTATTGGA+AGG 0.587145 2_2:-65255844 Msa0265040:three_prime_UTR
TCATGGTTCAGATGGTTCTG+TGG 0.587485 2_2:-65255983 Msa0265040:CDS
AAGGGATAATACAATTAGAG+TGG 0.592143 2_2:-65258399 Msa0265040:CDS
AATTGTGACATGGTTCAGCT+GGG 0.592488 2_2:-65259772 None:intergenic
GAAATATGCTAAGATGGCAT+GGG 0.595556 2_2:-65256085 Msa0265040:CDS
AACATGAGAAATATGGCCAA+AGG 0.602955 2_2:+65258057 None:intergenic
GCTTTGAGCAATTCTTGACA+TGG 0.606847 2_2:+65256774 None:intergenic
TGATAAATTCAAGAGATGAA+AGG 0.622724 2_2:+65259730 None:intergenic
TGGTGTACTACGGTTAAGGA+GGG 0.631651 2_2:-65257159 Msa0265040:CDS
TATGCTAAGATGGCATGGGT+AGG 0.632516 2_2:-65256081 Msa0265040:CDS
AAGGATTGCAAACAAGAACA+AGG 0.637380 2_2:+65256520 None:intergenic
AATGATGGGAGTTGTGACAA+TGG 0.638209 2_2:-65256267 Msa0265040:CDS
ACAAAACCATGATCACTCCA+AGG 0.642179 2_2:+65256049 None:intergenic
TAGGCTTGCAATGGTCAACA+AGG 0.643609 2_2:+65256112 None:intergenic
TAAGATGGCATGGGTAGGAA+TGG 0.645876 2_2:-65256076 Msa0265040:CDS
GGAATGTTATGCCTTCTATG+TGG 0.645924 2_2:-65258195 Msa0265040:CDS
GGAAGCCAATGTTAATGTTG+AGG 0.652341 2_2:-65257749 Msa0265040:CDS
ACGAATAGGTGACATTCCAA+AGG 0.664454 2_2:-65256442 Msa0265040:intron
TTACCTGCAGCAGAATCACC+AGG 0.670804 2_2:+65259368 None:intergenic
ATTTGTGTAGAGTTGCAACA+GGG 0.687136 2_2:-65257909 Msa0265040:intron
TGTCAGAACAGATTACACAA+AGG 0.693803 2_2:-65258418 Msa0265040:CDS
GAATTCGGTACTTCACAATG+AGG 0.698419 2_2:+65255958 None:intergenic
TGAGAGTTAAAATTGTGACA+TGG 0.716889 2_2:-65259782 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAA+AGG - chr2_2:65259708-65259727 Msa0265040:intron 0.0%
!! TATATATATATATATATAAA+GGG - chr2_2:65259709-65259728 Msa0265040:intron 0.0%
!!! TTGATATTTTTATATTTGTT+TGG + chr2_2:65256804-65256823 None:intergenic 10.0%
!! AAAATATTACTATGTAATTA+TGG + chr2_2:65258458-65258477 None:intergenic 10.0%
!! TATATATATATATATAAAGG+GGG - chr2_2:65259711-65259730 Msa0265040:intron 10.0%
!! TACATATACATAATTTGATT+TGG - chr2_2:65255815-65255834 Msa0265040:three_prime_UTR 15.0%
!!! CATTTTTATGATATTTGATA+GGG + chr2_2:65256374-65256393 None:intergenic 15.0%
!!! GCTTTAAATATTTATTTCAA+AGG - chr2_2:65256446-65256465 Msa0265040:CDS 15.0%
!!! TACTTTTTGAAATTATCTAA+TGG + chr2_2:65257006-65257025 None:intergenic 15.0%
!! AAAATGAATGAAAAATTACA+TGG - chr2_2:65258020-65258039 Msa0265040:intron 15.0%
!!! GTAATATTTTTATAAAGTAG+AGG - chr2_2:65258468-65258487 Msa0265040:intron 15.0%
!!! TATTTAGTTCATAAGAATAT+AGG - chr2_2:65259517-65259536 Msa0265040:intron 15.0%
!! CATTTAAAAAAAGTTATACA+CGG + chr2_2:65259588-65259607 None:intergenic 15.0%
!! TTTATCAGAACAATATTTGA+TGG + chr2_2:65255741-65255760 None:intergenic 20.0%
!! ATTCATGTTGAAATATTACA+TGG - chr2_2:65256134-65256153 Msa0265040:CDS 20.0%
!!! CCATTTTTATGATATTTGAT+AGG + chr2_2:65256375-65256394 None:intergenic 20.0%
!! CCTATCAAATATCATAAAAA+TGG - chr2_2:65256372-65256391 Msa0265040:intron 20.0%
!! AAATCATAAAAATGGTCAAA+TGG - chr2_2:65256419-65256438 Msa0265040:intron 20.0%
!! AATCATAAAAATGGTCAAAT+GGG - chr2_2:65256420-65256439 Msa0265040:intron 20.0%
!! ACATGATATATTTATTAACC+AGG - chr2_2:65256502-65256521 Msa0265040:CDS 20.0%
!!! ATGTTAGAAATTGTTTTGTT+AGG - chr2_2:65256704-65256723 Msa0265040:intron 20.0%
!!! TGTTAGAAATTGTTTTGTTA+GGG - chr2_2:65256705-65256724 Msa0265040:intron 20.0%
!!! TCATTTTTTGAAATTGTCTT+TGG - chr2_2:65256891-65256910 Msa0265040:intron 20.0%
!! TTTCGTCATTAAAATTGTAA+TGG - chr2_2:65257779-65257798 Msa0265040:CDS 20.0%
!! TTTACTATTTAAACAGTAGT+AGG + chr2_2:65258003-65258022 None:intergenic 20.0%
!! TGTAATTATGGTAATAAGAA+AGG + chr2_2:65258446-65258465 None:intergenic 20.0%
!! TATCTATAATCTTGTTAATG+AGG - chr2_2:65258656-65258675 Msa0265040:intron 20.0%
!! ACATTAATATAGAACTCATT+TGG + chr2_2:65258720-65258739 None:intergenic 20.0%
!!! TGTTCATAAACTATTGTTTT+TGG - chr2_2:65258737-65258756 Msa0265040:intron 20.0%
!! TATATAGGACTAAAGTTAAA+TGG - chr2_2:65258989-65259008 Msa0265040:intron 20.0%
!!! AATGTGATCATTCTTTTTTA+AGG - chr2_2:65259058-65259077 Msa0265040:intron 20.0%
!!! AAATTTTATCCCACTAAATA+AGG + chr2_2:65259624-65259643 None:intergenic 20.0%
! TGATAAATTCAAGAGATGAA+AGG + chr2_2:65255650-65255669 None:intergenic 25.0%
! TTGATTGCATCTAGTTAAAT+TGG - chr2_2:65255895-65255914 Msa0265040:three_prime_UTR 25.0%
! TTGAATATAATCACATGTGT+CGG - chr2_2:65256244-65256263 Msa0265040:CDS 25.0%
! ATGTCTTCAATTAGAAATGT+CGG - chr2_2:65256293-65256312 Msa0265040:CDS 25.0%
!! GATAATTTCAAAAAGTACAG+AGG - chr2_2:65257009-65257028 Msa0265040:CDS 25.0%
! AAGGTTTATCATCACAAAAA+TGG - chr2_2:65257236-65257255 Msa0265040:intron 25.0%
! CTCTAATGATTAATCACTAA+AGG + chr2_2:65257380-65257399 None:intergenic 25.0%
!!! CGACACATACAATTTTTTTA+TGG - chr2_2:65257412-65257431 Msa0265040:intron 25.0%
!!! TTTTCAAGCCATTATTGATA+AGG + chr2_2:65257736-65257755 None:intergenic 25.0%
! GTCATTAAAATTGTAATGGT+TGG - chr2_2:65257783-65257802 Msa0265040:CDS 25.0%
! AATTTCAACGACTAAATTGA+CGG - chr2_2:65257929-65257948 Msa0265040:intron 25.0%
! TTTAGTCCTTGAAATTGAAA+AGG + chr2_2:65257956-65257975 None:intergenic 25.0%
! GAAAAATTACATGGAAGTAA+TGG - chr2_2:65258029-65258048 Msa0265040:intron 25.0%
! AATGGAATAAATTTCATTGC+AGG - chr2_2:65258047-65258066 Msa0265040:intron 25.0%
!!! TTAACATCGTGTTTTGATTT+TGG - chr2_2:65258131-65258150 Msa0265040:CDS 25.0%
! TGTATCAATCATTATGTGTA+TGG + chr2_2:65258158-65258177 None:intergenic 25.0%
! ACATGATTCTCATATAATGT+TGG - chr2_2:65258175-65258194 Msa0265040:CDS 25.0%
!! AATTTTCATTGAACAGTTTC+TGG - chr2_2:65258198-65258217 Msa0265040:CDS 25.0%
!!! TGAAATTTTAGCATACTTAC+AGG + chr2_2:65258251-65258270 None:intergenic 25.0%
! TACTCCAACATGAAATTAAT+AGG + chr2_2:65258778-65258797 None:intergenic 25.0%
!!! GAGTAACTTTTTTGGATTTT+TGG - chr2_2:65258793-65258812 Msa0265040:intron 25.0%
!!! AACTTTTTTGGATTTTTGGT+TGG - chr2_2:65258797-65258816 Msa0265040:intron 25.0%
!!! TCATCTTGGTCTTATAATTT+AGG + chr2_2:65259032-65259051 None:intergenic 25.0%
! ATCACATTGTTAATTCATCT+TGG + chr2_2:65259046-65259065 None:intergenic 25.0%
!! ATTAAAGCCTTTTACTTGTT+TGG - chr2_2:65259082-65259101 Msa0265040:intron 25.0%
! TTTGTATCCAAACAAGTAAA+AGG + chr2_2:65259092-65259111 None:intergenic 25.0%
!! AGAATGCATCTTTTACAATT+TGG + chr2_2:65259238-65259257 None:intergenic 25.0%
! ATCTTAGCATATTTCTTCAT+AGG + chr2_2:65259287-65259306 None:intergenic 25.0%
! TATGAAGAAATATGCTAAGA+TGG - chr2_2:65259286-65259305 Msa0265040:intron 25.0%
!!! TGGTTTTGTTGATTATGTTT+TGG - chr2_2:65259342-65259361 Msa0265040:intron 25.0%
!!! GATTATGTTTTGGACTATAA+AGG - chr2_2:65259352-65259371 Msa0265040:intron 25.0%
!! ATTCAGTATACCTTATTTAG+TGG - chr2_2:65259611-65259630 Msa0265040:intron 25.0%
!! TTCAGTATACCTTATTTAGT+GGG - chr2_2:65259612-65259631 Msa0265040:intron 25.0%
! TATATACAAATGTTGCATGT+CGG + chr2_2:65259665-65259684 None:intergenic 25.0%
GATTATGATGATATAGACCA+TGG - chr2_2:65255831-65255850 Msa0265040:three_prime_UTR 30.0%
GTATATGCATATAGATACCA+TGG + chr2_2:65255851-65255870 None:intergenic 30.0%
TTAAAGATGTTCATAGCCAA+AGG - chr2_2:65255922-65255941 Msa0265040:CDS 30.0%
TATAATAGATACCAAGCCTT+TGG + chr2_2:65255941-65255960 None:intergenic 30.0%
GTAGATTGCAGAAAATTTGA+AGG + chr2_2:65256085-65256104 None:intergenic 30.0%
ATTTATTAACCAGGAAGAGT+AGG - chr2_2:65256511-65256530 Msa0265040:CDS 30.0%
TTTATTAACCAGGAAGAGTA+GGG - chr2_2:65256512-65256531 Msa0265040:CDS 30.0%
!! TAATTTGTTATGCTTTAGCC+AGG + chr2_2:65256548-65256567 None:intergenic 30.0%
!!! GAGAGACAATCTTTTTTTCA+TGG + chr2_2:65256630-65256649 None:intergenic 30.0%
GTATGTTAGTAGCTAAACTT+GGG + chr2_2:65256684-65256703 None:intergenic 30.0%
TGTATGTTAGTAGCTAAACT+TGG + chr2_2:65256685-65256704 None:intergenic 30.0%
AAGGGATAATACAATTAGAG+TGG - chr2_2:65256978-65256997 Msa0265040:CDS 30.0%
! AATTTCAAAAAGTACAGAGG+AGG - chr2_2:65257012-65257031 Msa0265040:CDS 30.0%
ACATCACCAACAAGAATTAT+TGG - chr2_2:65257040-65257059 Msa0265040:intron 30.0%
TACACTCCAATAATTCTTGT+TGG + chr2_2:65257049-65257068 None:intergenic 30.0%
GAAGTTAGACTCAAAAAAGA+GGG + chr2_2:65257083-65257102 None:intergenic 30.0%
TGAAGTTAGACTCAAAAAAG+AGG + chr2_2:65257084-65257103 None:intergenic 30.0%
TTGTAGTCTTTGATATTCAC+TGG - chr2_2:65257140-65257159 Msa0265040:intron 30.0%
TTGATATTCACTGGAGTATA+TGG - chr2_2:65257149-65257168 Msa0265040:CDS 30.0%
CATACAAAATTCCACATAGA+AGG + chr2_2:65257196-65257215 None:intergenic 30.0%
! CTTCTATGTGGAATTTTGTA+TGG - chr2_2:65257194-65257213 Msa0265040:intron 30.0%
!! AGTTATTTTGCTGATCACAA+AGG - chr2_2:65257217-65257236 Msa0265040:intron 30.0%
GTTTATCATCACAAAAATGG+AGG - chr2_2:65257239-65257258 Msa0265040:intron 30.0%
TCACAACTCTTGTAATTACA+AGG + chr2_2:65257287-65257306 None:intergenic 30.0%
TGATGCTTTACTAATTCCTT+TGG - chr2_2:65257304-65257323 Msa0265040:CDS 30.0%
GGCTATTAACATGAGAAATA+TGG + chr2_2:65257330-65257349 None:intergenic 30.0%
CATAATCAAAACAGCAAACA+AGG - chr2_2:65257547-65257566 Msa0265040:intron 30.0%
!! AACACAACAGAAGCATTAAA+AGG - chr2_2:65257587-65257606 Msa0265040:intron 30.0%
AAATGCAAGCTCAGAAAAAT+AGG - chr2_2:65257708-65257727 Msa0265040:CDS 30.0%
GTTTCTCAAACTTGTGAAAT+TGG - chr2_2:65257814-65257833 Msa0265040:CDS 30.0%
!! CTTTTGTTACTCTTTTTCAC+AGG - chr2_2:65258336-65258355 Msa0265040:CDS 30.0%
AATTAATAGGTCCAGTATGT+TGG + chr2_2:65258765-65258784 None:intergenic 30.0%
TGGACCTATTAATTTCATGT+TGG - chr2_2:65258771-65258790 Msa0265040:intron 30.0%
!!! TCATGTTGGAGTAACTTTTT+TGG - chr2_2:65258785-65258804 Msa0265040:intron 30.0%
AGTATTATCTGGACAATTCT+CGG + chr2_2:65258913-65258932 None:intergenic 30.0%
CCTATTCGTATAGTATTATC+TGG + chr2_2:65258924-65258943 None:intergenic 30.0%
CCAGATAATACTATACGAAT+AGG - chr2_2:65258921-65258940 Msa0265040:intron 30.0%
TTAGTCCTATATAAACAGCT+CGG + chr2_2:65258982-65259001 None:intergenic 30.0%
ACTTGTTTGGATACAAATGA+TGG - chr2_2:65259095-65259114 Msa0265040:intron 30.0%
CTTGTTTGGATACAAATGAT+GGG - chr2_2:65259096-65259115 Msa0265040:intron 30.0%
TACTTGGATACACATTCAAT+AGG + chr2_2:65259196-65259215 None:intergenic 30.0%
ATTGAATGTGTATCCAAGTA+TGG - chr2_2:65259196-65259215 Msa0265040:intron 30.0%
TCTAACAAATGTTCCATACT+TGG + chr2_2:65259212-65259231 None:intergenic 30.0%
AGTCATGAACATTGTTATCA+TGG - chr2_2:65259377-65259396 Msa0265040:CDS 30.0%
! TTTAACTGCTCTTGATTTGA+AGG + chr2_2:65259444-65259463 None:intergenic 30.0%
GTTCATAAGAATATAGGAAC+CGG - chr2_2:65259523-65259542 Msa0265040:intron 30.0%
! AAAAGTTATACACGGATTAC+TGG + chr2_2:65259580-65259599 None:intergenic 30.0%
! GTTATTTCAATAGACCTTAG+AGG - chr2_2:65259741-65259760 Msa0265040:five_prime_UTR 30.0%
AATTATACTCACTTCCTCTA+AGG + chr2_2:65259758-65259777 None:intergenic 30.0%
GGAAAGAACATTATGACATG+TGG + chr2_2:65255702-65255721 None:intergenic 35.0%
GATGGTATAAGTGAGTTACA+AGG + chr2_2:65255723-65255742 None:intergenic 35.0%
TTGCATCTAGTTAAATTGGC+AGG - chr2_2:65255899-65255918 Msa0265040:three_prime_UTR 35.0%
TTGTACTTGTAGAGACTATG+AGG + chr2_2:65256046-65256065 None:intergenic 35.0%
TTTCACTCATTATGAGAGAG+AGG + chr2_2:65256737-65256756 None:intergenic 35.0%
TGTCAGAACAGATTACACAA+AGG - chr2_2:65256959-65256978 Msa0265040:CDS 35.0%
GTCAGAACAGATTACACAAA+GGG - chr2_2:65256960-65256979 Msa0265040:CDS 35.0%
GGAGTATATGGATATGCAAT+TGG - chr2_2:65257161-65257180 Msa0265040:CDS 35.0%
AACATGAGAAATATGGCCAA+AGG + chr2_2:65257323-65257342 None:intergenic 35.0%
GATTAATCACTAAAGGCTAG+AGG + chr2_2:65257373-65257392 None:intergenic 35.0%
TCATGCATATACATCACTTG+AGG + chr2_2:65257442-65257461 None:intergenic 35.0%
ATTTGTGTAGAGTTGCAACA+GGG - chr2_2:65257468-65257487 Msa0265040:intron 35.0%
!!! CTGAAGTTTTAGCTTCTGAA+TGG + chr2_2:65257520-65257539 None:intergenic 35.0%
!! AACAGAAGCATTAAAAGGCA+TGG - chr2_2:65257592-65257611 Msa0265040:intron 35.0%
AGAAGCCTCAACATTAACAT+TGG + chr2_2:65257636-65257655 None:intergenic 35.0%
AATAGGCGCCTTATCAATAA+TGG - chr2_2:65257725-65257744 Msa0265040:CDS 35.0%
! AATTTTGCACCACGAGTTAA+GGG + chr2_2:65257848-65257867 None:intergenic 35.0%
! AAATTTTGCACCACGAGTTA+AGG + chr2_2:65257849-65257868 None:intergenic 35.0%
GTCGTTGAAATTTGCGAAAT+AGG + chr2_2:65257921-65257940 None:intergenic 35.0%
!! CTTGCTGTAACAATTTTGTC+AGG - chr2_2:65258106-65258125 Msa0265040:CDS 35.0%
! GTATTATGCTGGCTATTCTT+TGG - chr2_2:65258386-65258405 Msa0265040:CDS 35.0%
GAGCTTAAGCTGTTGTTATA+AGG + chr2_2:65258576-65258595 None:intergenic 35.0%
GCACTAAATTCAGATAGAAC+TGG + chr2_2:65258633-65258652 None:intergenic 35.0%
GTTCTATCTGAATTTAGTGC+TGG - chr2_2:65258633-65258652 Msa0265040:intron 35.0%
!!! TGTTTTTGGATCCAACATAC+TGG - chr2_2:65258751-65258770 Msa0265040:intron 35.0%
AAGGATTGCAAACAAGAACA+AGG + chr2_2:65258860-65258879 None:intergenic 35.0%
GTATTATCTGGACAATTCTC+GGG + chr2_2:65258912-65258931 None:intergenic 35.0%
ATAGGGACAAAAACTACCTT+TGG + chr2_2:65258954-65258973 None:intergenic 35.0%
TAAACAGCTCGGATTGTATA+GGG + chr2_2:65258971-65258990 None:intergenic 35.0%
ATAAACAGCTCGGATTGTAT+AGG + chr2_2:65258972-65258991 None:intergenic 35.0%
ACAATCCGAGCTGTTTATAT+AGG - chr2_2:65258974-65258993 Msa0265040:intron 35.0%
ATTTCTTCATAGGCTTGCAA+TGG + chr2_2:65259277-65259296 None:intergenic 35.0%
AGAAATATGCTAAGATGGCA+TGG - chr2_2:65259291-65259310 Msa0265040:intron 35.0%
GAAATATGCTAAGATGGCAT+GGG - chr2_2:65259292-65259311 Msa0265040:intron 35.0%
CATTGTTATCATGGTTCAGA+TGG - chr2_2:65259386-65259405 Msa0265040:CDS 35.0%
! GCTCTTGATTTGAAGGAATT+CGG + chr2_2:65259437-65259456 None:intergenic 35.0%
AAGAATATAGGAACCGGTAT+TGG - chr2_2:65259529-65259548 Msa0265040:intron 35.0%
CAGCTTGTGCTTCAATTTGT+GGG + chr2_2:65255984-65256003 None:intergenic 40.0%
ACAGCTTGTGCTTCAATTTG+TGG + chr2_2:65255985-65256004 None:intergenic 40.0%
ACTCTGATAGACACATACAC+CGG - chr2_2:65256168-65256187 Msa0265040:CDS 40.0%
GGCAACACACATTATCATGT+CGG - chr2_2:65256202-65256221 Msa0265040:CDS 40.0%
GTTAGTAGCTAAACTTGGGT+AGG + chr2_2:65256680-65256699 None:intergenic 40.0%
GGAATGTTATGCCTTCTATG+TGG - chr2_2:65257182-65257201 Msa0265040:intron 40.0%
GCAAGGTTGAATGACTTACA+TGG + chr2_2:65257351-65257370 None:intergenic 40.0%
GATTTGTGTAGAGTTGCAAC+AGG - chr2_2:65257467-65257486 Msa0265040:intron 40.0%
GGAAGCCAATGTTAATGTTG+AGG - chr2_2:65257628-65257647 Msa0265040:intron 40.0%
GAATTTAGTCCCTTAACTCG+TGG - chr2_2:65257836-65257855 Msa0265040:CDS 40.0%
! GACGGACCTTTTCAATTTCA+AGG - chr2_2:65257947-65257966 Msa0265040:intron 40.0%
!! GAACAGTTTCTGGTGTACTA+CGG - chr2_2:65258208-65258227 Msa0265040:CDS 40.0%
! TTTCTGGTGTACTACGGTTA+AGG - chr2_2:65258214-65258233 Msa0265040:CDS 40.0%
GGTTGTTGACAGTATTATGC+TGG - chr2_2:65258375-65258394 Msa0265040:CDS 40.0%
TGAGCAATTCTTGACATGGA+AGG + chr2_2:65258602-65258621 None:intergenic 40.0%
! GCTTTGAGCAATTCTTGACA+TGG + chr2_2:65258606-65258625 None:intergenic 40.0%
!!! GGATTTTTGGTTGGTTGTCT+AGG - chr2_2:65258806-65258825 Msa0265040:intron 40.0%
!! GGTTGGTAGGTATAATTTGG+TGG + chr2_2:65258891-65258910 None:intergenic 40.0%
!! TCGGGTTGGTAGGTATAATT+TGG + chr2_2:65258894-65258913 None:intergenic 40.0%
ACGAATAGGTGACATTCCAA+AGG - chr2_2:65258935-65258954 Msa0265040:intron 40.0%
! AATGATGGGAGTTGTGACAA+TGG - chr2_2:65259110-65259129 Msa0265040:intron 40.0%
ACAAAACCATGATCACTCCA+AGG + chr2_2:65259331-65259350 None:intergenic 40.0%
GAATTCGGTACTTCACAATG+AGG + chr2_2:65259422-65259441 None:intergenic 40.0%
! ATATAGGAACCGGTATTGGA+AGG - chr2_2:65259533-65259552 Msa0265040:intron 40.0%
! GCATTTTTGCCTTCCAATAC+CGG + chr2_2:65259545-65259564 None:intergenic 40.0%
GATGTTCATAGCCAAAGGCT+TGG - chr2_2:65255927-65255946 Msa0265040:CDS 45.0%
CATACACCGGACACAACATT+TGG - chr2_2:65256181-65256200 Msa0265040:CDS 45.0%
GTGTTGCCAAATGTTGTGTC+CGG + chr2_2:65256190-65256209 None:intergenic 45.0%
ATCACTAAAGGCTAGAGGCA+AGG + chr2_2:65257368-65257387 None:intergenic 45.0%
!! CAACAGGGCTAGTTCTTGTA+GGG - chr2_2:65257483-65257502 Msa0265040:intron 45.0%
AGGCATGGAGAGTAACTTGA+TGG - chr2_2:65257607-65257626 Msa0265040:intron 45.0%
GGAGAGACAGTAGAGCAAAT+AGG + chr2_2:65257982-65258001 None:intergenic 45.0%
TGGTGTACTACGGTTAAGGA+GGG - chr2_2:65258218-65258237 Msa0265040:CDS 45.0%
!! ACAGGCTTGTTGTACTTTGC+TGG - chr2_2:65258354-65258373 Msa0265040:CDS 45.0%
!! TAATTTGGTGGCGCTGAGAA+AGG + chr2_2:65258879-65258898 None:intergenic 45.0%
TATCTGGACAATTCTCGGGT+TGG + chr2_2:65258908-65258927 None:intergenic 45.0%
TAGGCTTGCAATGGTCAACA+AGG + chr2_2:65259268-65259287 None:intergenic 45.0%
TATGCTAAGATGGCATGGGT+AGG - chr2_2:65259296-65259315 Msa0265040:intron 45.0%
TAAGATGGCATGGGTAGGAA+TGG - chr2_2:65259301-65259320 Msa0265040:intron 45.0%
! TCATGGTTCAGATGGTTCTG+TGG - chr2_2:65259394-65259413 Msa0265040:CDS 45.0%
!! AAAAAAAAAAATCATAAAAA+TGG - chr2_2:65256411-65256430 Msa0265040:intron 5.0%
!! ATATATATATATATATAAAG+GGG - chr2_2:65259710-65259729 Msa0265040:intron 5.0%
TTACCTGCAGCAGAATCACC+AGG + chr2_2:65256012-65256031 None:intergenic 50.0%
AACCAGGAAGAGTAGGGCTA+AGG - chr2_2:65256518-65256537 Msa0265040:CDS 50.0%
TTCCTTAGCCCTACTCTTCC+TGG + chr2_2:65256523-65256542 None:intergenic 50.0%
GAGTAGGGCTAAGGAATTCC+TGG - chr2_2:65256527-65256546 Msa0265040:CDS 50.0%
!! GCAACAGGGCTAGTTCTTGT+AGG - chr2_2:65257482-65257501 Msa0265040:intron 50.0%
CTGGTGTACTACGGTTAAGG+AGG - chr2_2:65258217-65258236 Msa0265040:CDS 50.0%
!! TGGACAATTCTCGGGTTGGT+AGG + chr2_2:65258904-65258923 None:intergenic 50.0%
TGGGTAGGAATGGTGTTCCT+TGG - chr2_2:65259311-65259330 Msa0265040:intron 50.0%
GGTGTTCCTTGGAGTGATCA+TGG - chr2_2:65259322-65259341 Msa0265040:intron 50.0%
GAAGCACAAGCTGTCTCACC+TGG - chr2_2:65255991-65256010 Msa0265040:CDS 55.0%
TCACCTGGTGATTCTGCTGC+AGG - chr2_2:65256006-65256025 Msa0265040:CDS 55.0%
!! CACATGTGTCGGTGTCACGT+CGG - chr2_2:65256255-65256274 Msa0265040:CDS 55.0%
!! TGTCGGTGTCACGTCGGAGT+CGG - chr2_2:65256261-65256280 Msa0265040:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 65255610 65259789 65255610 ID=Msa0265040;Name=Msa0265040
chr2_2 mRNA 65255610 65259789 65255610 ID=Msa0265040-mRNA-1;Parent=Msa0265040;Name=Msa0265040-mRNA-1;_AED=0.12;_eAED=0.12;_QI=80|0.81|0.83|1|0.81|0.66|12|289|498
chr2_2 exon 65255610 65255695 65255610 ID=Msa0265040-mRNA-1:exon:20488;Parent=Msa0265040-mRNA-1
chr2_2 exon 65255718 65256319 65255718 ID=Msa0265040-mRNA-1:exon:20487;Parent=Msa0265040-mRNA-1
chr2_2 exon 65256443 65256571 65256443 ID=Msa0265040-mRNA-1:exon:20486;Parent=Msa0265040-mRNA-1
chr2_2 exon 65256722 65256872 65256722 ID=Msa0265040-mRNA-1:exon:20485;Parent=Msa0265040-mRNA-1
chr2_2 exon 65256959 65257041 65256959 ID=Msa0265040-mRNA-1:exon:20484;Parent=Msa0265040-mRNA-1
chr2_2 exon 65257149 65257185 65257149 ID=Msa0265040-mRNA-1:exon:20483;Parent=Msa0265040-mRNA-1
chr2_2 exon 65257272 65257330 65257272 ID=Msa0265040-mRNA-1:exon:20482;Parent=Msa0265040-mRNA-1
chr2_2 exon 65257702 65257921 65257702 ID=Msa0265040-mRNA-1:exon:20481;Parent=Msa0265040-mRNA-1
chr2_2 exon 65258048 65258253 65258048 ID=Msa0265040-mRNA-1:exon:20480;Parent=Msa0265040-mRNA-1
chr2_2 exon 65258334 65258446 65258334 ID=Msa0265040-mRNA-1:exon:20479;Parent=Msa0265040-mRNA-1
chr2_2 exon 65259372 65259490 65259372 ID=Msa0265040-mRNA-1:exon:20478;Parent=Msa0265040-mRNA-1
chr2_2 exon 65259729 65259789 65259729 ID=Msa0265040-mRNA-1:exon:20477;Parent=Msa0265040-mRNA-1
chr2_2 five_prime_UTR 65259729 65259789 65259729 ID=Msa0265040-mRNA-1:five_prime_utr;Parent=Msa0265040-mRNA-1
chr2_2 five_prime_UTR 65259472 65259490 65259472 ID=Msa0265040-mRNA-1:five_prime_utr;Parent=Msa0265040-mRNA-1
chr2_2 CDS 65259372 65259471 65259372 ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1
chr2_2 CDS 65258334 65258446 65258334 ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1
chr2_2 CDS 65258048 65258253 65258048 ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1
chr2_2 CDS 65257702 65257921 65257702 ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1
chr2_2 CDS 65257272 65257330 65257272 ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1
chr2_2 CDS 65257149 65257185 65257149 ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1
chr2_2 CDS 65256959 65257041 65256959 ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1
chr2_2 CDS 65256722 65256872 65256722 ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1
chr2_2 CDS 65256443 65256571 65256443 ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1
chr2_2 CDS 65255921 65256319 65255921 ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1
chr2_2 three_prime_UTR 65255718 65255920 65255718 ID=Msa0265040-mRNA-1:three_prime_utr;Parent=Msa0265040-mRNA-1
chr2_2 three_prime_UTR 65255610 65255695 65255610 ID=Msa0265040-mRNA-1:three_prime_utr;Parent=Msa0265040-mRNA-1
Gene Sequence

>Msa0265040

ATGTTCATAGCCAAAGGCTTGGTATCTATTATAGTGATTATAACATTGATTCTCCCACAAATTGAAGCACAAGCTGTCTCACCTGGTGATTCTGCTGCAGATAATGTGTCAGAACAGATTACACAAAGGGATAATACAATTAGAGTGGATCCATTAGATAATTTCAAAAAGTACAGAGGAGGATTTGACATCACCAACAAGAATTATTGGAGTTCTTTGATATTCACTGGAGTATATGGATATGCAATTGGAATGTTATGCCTTCTATGTGGAATTTTGTATGGAGTTATTTTGCTGATCACAAAGGTTTATCATCACAAAAATGGAGGAAAAAGAATGAAGAAAGTGTTTCCTTGTAATTACAAGAGTTGTGATGCTTTACTAATTCCTTTGGCCATATTTCTCATGTTAATAGCCATAGTTGCAACAGGGCTAGTTCTTGTAGGGAGTGCAAGATTCCATTCAGAAGCTAAAACTTCAGTTGATATCATAATCAAAACAGCAAACAAGGCATCAGAAACAATACACAACACAACAGAAGCATTAAAAGGCATGGAGAGTAACTTGATGGAAGCCAATGTTAATGTTGAGGCTTCTTCAAATCTTGACTCTACAGCTGAAAAACTTGATGATGCATCTGTTTATAACTACTACAGTGATCATGTGCTTGAACTTGCTTGCTGTAACAATTTTGTCAGTTTCTGGTGTACTACGGTTAAGGAGGGCATTGTACCTGCTTGTTGTACTTTGCTGGTTGTTGACAGTATTATGCTGGCTATTCTTTGGAGTCTATTTCTTCTTAGAAAAGTAATTCAAAAATTTTCTAGTGATGCTTGCACAGCTCTTGACAACTTTCAAGAAAATCCTTATAACAACAGCTTAAGCTCAATCCTTCCATGTCAAGAATTGCTCAAAGCAAAACCAGTTCTATCTGAATTTAGTGCTGGTATCTATAATCTTGTTAATGAGGTGAATGCAAACATATCAATGCAGACAAACCTTGTTCTTGTTTGCAATCCTTTCTCAGCGCCACCAAATTATACCTACCAACCCGAGAATTGTCCAGATAATACTATACGAATAGGTGACATTCCAAAGGTATTAAAGCCTTTTACTTGTTTGGATACAAATGATGGGAGTTGTGACAATGGAAATTTCATAACAAACAGTGAATATGCAAGAGTTGAAACTTACACAAATTCAATTCAAGACCTATTGAATGTGTATCCAAGTATGGAACATTTGTTAGAATGCCAAATTGTAAAAGATGCATTCTCTCAAGTCCTTGTTGACCATTGCAAGCCTATGAAGAAATATGCTAAGATGGCATGGGTAGGAATGGTGTTCCTTGGAGTGATCATGGTTTTGTTGATTATGTTTTGGACTATAAAGGCTAGTCATGAACATTGTTATCATGGTTCAGATGGTTCTGTGGAGCCTCATTGTGAAGTACCGAATTCCTTCAAATCAAGAGCAGTTAAAGAGATTGAGATTTGA

Protein sequence

>Msa0265040

MFIAKGLVSIIVIITLILPQIEAQAVSPGDSAADNVSEQITQRDNTIRVDPLDNFKKYRGGFDITNKNYWSSLIFTGVYGYAIGMLCLLCGILYGVILLITKVYHHKNGGKRMKKVFPCNYKSCDALLIPLAIFLMLIAIVATGLVLVGSARFHSEAKTSVDIIIKTANKASETIHNTTEALKGMESNLMEANVNVEASSNLDSTAEKLDDASVYNYYSDHVLELACCNNFVSFWCTTVKEGIVPACCTLLVVDSIMLAILWSLFLLRKVIQKFSSDACTALDNFQENPYNNSLSSILPCQELLKAKPVLSEFSAGIYNLVNEVNANISMQTNLVLVCNPFSAPPNYTYQPENCPDNTIRIGDIPKVLKPFTCLDTNDGSCDNGNFITNSEYARVETYTNSIQDLLNVYPSMEHLLECQIVKDAFSQVLVDHCKPMKKYAKMAWVGMVFLGVIMVLLIMFWTIKASHEHCYHGSDGSVEPHCEVPNSFKSRAVKEIEI*