Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265040 | XP_013465459.1 | 84.660 | 515 | 62 | 4 | 1 | 498 | 1 | 515 | 0.0 | 863 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265040 | A0A072VBU4 | 84.660 | 515 | 62 | 4 | 1 | 498 | 1 | 515 | 0.0 | 863 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0223860 | Msa0265040 | 0.921198 | 4.866744e-88 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265040 | MtrunA17_Chr2g0329621 | 84.660 | 515 | 62 | 4 | 1 | 498 | 1 | 515 | 0.0 | 863 |
Msa0265040 | MtrunA17_Chr5g0401081 | 30.568 | 458 | 260 | 11 | 48 | 465 | 43 | 482 | 2.09e-64 | 217 |
Msa0265040 | MtrunA17_Chr1g0208531 | 23.517 | 489 | 314 | 14 | 20 | 467 | 53 | 522 | 6.83e-30 | 123 |
Msa0265040 | MtrunA17_Chr3g0137351 | 22.407 | 482 | 287 | 15 | 44 | 469 | 67 | 517 | 1.08e-29 | 122 |
Msa0265040 | MtrunA17_Chr2g0304631 | 21.649 | 485 | 314 | 15 | 30 | 469 | 54 | 517 | 1.39e-22 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265040 | AT5G67550.1 | 24.902 | 510 | 329 | 11 | 6 | 480 | 8 | 498 | 1.03e-49 | 178 |
Msa0265040 | AT2G25270.1 | 23.667 | 469 | 297 | 15 | 44 | 469 | 75 | 525 | 1.14e-31 | 128 |
Msa0265040 | AT2G12400.1 | 24.547 | 497 | 308 | 15 | 37 | 487 | 63 | 538 | 1.19e-29 | 122 |
Msa0265040 | AT1G71110.1 | 22.016 | 486 | 322 | 12 | 25 | 469 | 51 | 520 | 1.06e-25 | 110 |
Msa0265040 | AT1G80540.1 | 19.097 | 487 | 331 | 13 | 28 | 463 | 43 | 517 | 2.91e-16 | 82.0 |
Msa0265040 | AT1G80540.3 | 18.856 | 472 | 330 | 12 | 33 | 463 | 12 | 471 | 4.51e-16 | 81.3 |
Find 98 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATCACCAACAAGAATTAT+TGG | 0.207437 | 2_2:-65258337 | Msa0265040:CDS |
ATGTTAGTGTAATATATATT+AGG | 0.248865 | 2_2:+65255596 | None:intergenic |
TTGATATTCACTGGAGTATA+TGG | 0.251671 | 2_2:-65258228 | Msa0265040:CDS |
TCGGGTTGGTAGGTATAATT+TGG | 0.268119 | 2_2:+65256486 | None:intergenic |
TTGATTGCATCTAGTTAAAT+TGG | 0.279468 | 2_2:-65259482 | Msa0265040:intron |
GAGCTTAAGCTGTTGTTATA+AGG | 0.299992 | 2_2:+65256804 | None:intergenic |
AAAAGTTATACACGGATTAC+TGG | 0.300423 | 2_2:+65255800 | None:intergenic |
ACAGGCTTGTTGTACTTTGC+TGG | 0.301195 | 2_2:-65257023 | Msa0265040:intron |
GTATTATGCTGGCTATTCTT+TGG | 0.304357 | 2_2:-65256991 | Msa0265040:CDS |
GGCTATTAACATGAGAAATA+TGG | 0.305507 | 2_2:+65258050 | None:intergenic |
TTTAACTGCTCTTGATTTGA+AGG | 0.331948 | 2_2:+65255936 | None:intergenic |
TTTGTATCCAAACAAGTAAA+AGG | 0.335128 | 2_2:+65256288 | None:intergenic |
AACACAACAGAAGCATTAAA+AGG | 0.338281 | 2_2:-65257790 | Msa0265040:CDS |
TGATGCTTTACTAATTCCTT+TGG | 0.344919 | 2_2:-65258073 | Msa0265040:CDS |
ATTGAATGTGTATCCAAGTA+TGG | 0.345176 | 2_2:-65256181 | Msa0265040:CDS |
AATTATACTCACTTCCTCTA+AGG | 0.347425 | 2_2:+65255622 | None:intergenic |
GCTCTTGATTTGAAGGAATT+CGG | 0.358857 | 2_2:+65255943 | None:intergenic |
GTTATTTCAATAGACCTTAG+AGG | 0.363692 | 2_2:-65255636 | Msa0265040:three_prime_UTR |
ATCTTAGCATATTTCTTCAT+AGG | 0.370043 | 2_2:+65256093 | None:intergenic |
TACACTCCAATAATTCTTGT+TGG | 0.372190 | 2_2:+65258331 | None:intergenic |
CCTATTCGTATAGTATTATC+TGG | 0.379970 | 2_2:+65256456 | None:intergenic |
GCAACAGGGCTAGTTCTTGT+AGG | 0.391851 | 2_2:-65257895 | Msa0265040:CDS |
TATTTAGTTCATAAGAATAT+AGG | 0.395510 | 2_2:-65255860 | Msa0265040:three_prime_UTR |
CAGCTTGTGCTTCAATTTGT+GGG | 0.405144 | 2_2:+65259396 | None:intergenic |
AGTATTATCTGGACAATTCT+CGG | 0.408061 | 2_2:+65256467 | None:intergenic |
CATACAAAATTCCACATAGA+AGG | 0.413531 | 2_2:+65258184 | None:intergenic |
AGTCATGAACATTGTTATCA+TGG | 0.416314 | 2_2:-65256000 | Msa0265040:CDS |
GGAGTATATGGATATGCAAT+TGG | 0.424393 | 2_2:-65258216 | Msa0265040:CDS |
TTGTAGTCTTTGATATTCAC+TGG | 0.425080 | 2_2:-65258237 | Msa0265040:intron |
TCTAACAAATGTTCCATACT+TGG | 0.426331 | 2_2:+65256168 | None:intergenic |
CCAGATAATACTATACGAAT+AGG | 0.430631 | 2_2:-65256456 | Msa0265040:CDS |
TGTTAGTGTAATATATATTA+GGG | 0.433042 | 2_2:+65255597 | None:intergenic |
AAATTGTGACATGGTTCAGC+TGG | 0.434571 | 2_2:-65259773 | None:intergenic |
ATTCAGTATACCTTATTTAG+TGG | 0.439839 | 2_2:-65255766 | Msa0265040:three_prime_UTR |
AAGAATATAGGAACCGGTAT+TGG | 0.441138 | 2_2:-65255848 | Msa0265040:three_prime_UTR |
ACTTGTTTGGATACAAATGA+TGG | 0.450904 | 2_2:-65256282 | Msa0265040:CDS |
CATTGTTATCATGGTTCAGA+TGG | 0.453877 | 2_2:-65255991 | Msa0265040:CDS |
TGGGTAGGAATGGTGTTCCT+TGG | 0.455580 | 2_2:-65256066 | Msa0265040:CDS |
TATAATAGATACCAAGCCTT+TGG | 0.456475 | 2_2:+65259439 | None:intergenic |
GATTTGTGTAGAGTTGCAAC+AGG | 0.456871 | 2_2:-65257910 | Msa0265040:intron |
TTTCTGGTGTACTACGGTTA+AGG | 0.464706 | 2_2:-65257163 | Msa0265040:CDS |
GGTGTTCCTTGGAGTGATCA+TGG | 0.465850 | 2_2:-65256055 | Msa0265040:CDS |
GTTCATAAGAATATAGGAAC+CGG | 0.468801 | 2_2:-65255854 | Msa0265040:three_prime_UTR |
ACAGCTTGTGCTTCAATTTG+TGG | 0.469456 | 2_2:+65259395 | None:intergenic |
GCACTAAATTCAGATAGAAC+TGG | 0.472426 | 2_2:+65256747 | None:intergenic |
TATGAAGAAATATGCTAAGA+TGG | 0.477004 | 2_2:-65256091 | Msa0265040:CDS |
TCACCTGGTGATTCTGCTGC+AGG | 0.478707 | 2_2:-65259371 | Msa0265040:intron |
TAATTTGGTGGCGCTGAGAA+AGG | 0.479612 | 2_2:+65256501 | None:intergenic |
TTCAGTATACCTTATTTAGT+GGG | 0.484635 | 2_2:-65255765 | Msa0265040:three_prime_UTR |
GTATTATCTGGACAATTCTC+GGG | 0.490684 | 2_2:+65256468 | None:intergenic |
AGGCATGGAGAGTAACTTGA+TGG | 0.496619 | 2_2:-65257770 | Msa0265040:CDS |
GTTCTATCTGAATTTAGTGC+TGG | 0.497245 | 2_2:-65256744 | Msa0265040:CDS |
TTGCATCTAGTTAAATTGGC+AGG | 0.500388 | 2_2:-65259478 | Msa0265040:intron |
CAACAGGGCTAGTTCTTGTA+GGG | 0.506049 | 2_2:-65257894 | Msa0265040:CDS |
GGTTGTTGACAGTATTATGC+TGG | 0.511614 | 2_2:-65257002 | Msa0265040:CDS |
TGAGCAATTCTTGACATGGA+AGG | 0.514152 | 2_2:+65256778 | None:intergenic |
TATCTATAATCTTGTTAATG+AGG | 0.517870 | 2_2:-65256721 | Msa0265040:intron |
TACTTGGATACACATTCAAT+AGG | 0.517880 | 2_2:+65256184 | None:intergenic |
AGAAATATGCTAAGATGGCA+TGG | 0.519247 | 2_2:-65256086 | Msa0265040:CDS |
GGTTGGTAGGTATAATTTGG+TGG | 0.528341 | 2_2:+65256489 | None:intergenic |
GTCAGAACAGATTACACAAA+GGG | 0.530197 | 2_2:-65258417 | Msa0265040:CDS |
CATAATCAAAACAGCAAACA+AGG | 0.542949 | 2_2:-65257830 | Msa0265040:CDS |
AGAAGCCTCAACATTAACAT+TGG | 0.547079 | 2_2:+65257744 | None:intergenic |
GAAGCACAAGCTGTCTCACC+TGG | 0.551867 | 2_2:-65259386 | Msa0265040:CDS |
CTTGTTTGGATACAAATGAT+GGG | 0.553416 | 2_2:-65256281 | Msa0265040:CDS |
ATTTCTTCATAGGCTTGCAA+TGG | 0.560254 | 2_2:+65256103 | None:intergenic |
AACAGAAGCATTAAAAGGCA+TGG | 0.560327 | 2_2:-65257785 | Msa0265040:CDS |
TTAAAGATGTTCATAGCCAA+AGG | 0.561779 | 2_2:-65259455 | Msa0265040:exon |
GAACAGTTTCTGGTGTACTA+CGG | 0.561972 | 2_2:-65257169 | Msa0265040:intron |
GATGTTCATAGCCAAAGGCT+TGG | 0.569407 | 2_2:-65259450 | Msa0265040:CDS |
TATATACAAATGTTGCATGT+CGG | 0.581404 | 2_2:+65255715 | None:intergenic |
TATCTGGACAATTCTCGGGT+TGG | 0.582340 | 2_2:+65256472 | None:intergenic |
CTGGTGTACTACGGTTAAGG+AGG | 0.583051 | 2_2:-65257160 | Msa0265040:CDS |
TGGACAATTCTCGGGTTGGT+AGG | 0.583599 | 2_2:+65256476 | None:intergenic |
TCACAACTCTTGTAATTACA+AGG | 0.584647 | 2_2:+65258093 | None:intergenic |
ATATAGGAACCGGTATTGGA+AGG | 0.587145 | 2_2:-65255844 | Msa0265040:three_prime_UTR |
TCATGGTTCAGATGGTTCTG+TGG | 0.587485 | 2_2:-65255983 | Msa0265040:CDS |
AAGGGATAATACAATTAGAG+TGG | 0.592143 | 2_2:-65258399 | Msa0265040:CDS |
AATTGTGACATGGTTCAGCT+GGG | 0.592488 | 2_2:-65259772 | None:intergenic |
GAAATATGCTAAGATGGCAT+GGG | 0.595556 | 2_2:-65256085 | Msa0265040:CDS |
AACATGAGAAATATGGCCAA+AGG | 0.602955 | 2_2:+65258057 | None:intergenic |
GCTTTGAGCAATTCTTGACA+TGG | 0.606847 | 2_2:+65256774 | None:intergenic |
TGATAAATTCAAGAGATGAA+AGG | 0.622724 | 2_2:+65259730 | None:intergenic |
TGGTGTACTACGGTTAAGGA+GGG | 0.631651 | 2_2:-65257159 | Msa0265040:CDS |
TATGCTAAGATGGCATGGGT+AGG | 0.632516 | 2_2:-65256081 | Msa0265040:CDS |
AAGGATTGCAAACAAGAACA+AGG | 0.637380 | 2_2:+65256520 | None:intergenic |
AATGATGGGAGTTGTGACAA+TGG | 0.638209 | 2_2:-65256267 | Msa0265040:CDS |
ACAAAACCATGATCACTCCA+AGG | 0.642179 | 2_2:+65256049 | None:intergenic |
TAGGCTTGCAATGGTCAACA+AGG | 0.643609 | 2_2:+65256112 | None:intergenic |
TAAGATGGCATGGGTAGGAA+TGG | 0.645876 | 2_2:-65256076 | Msa0265040:CDS |
GGAATGTTATGCCTTCTATG+TGG | 0.645924 | 2_2:-65258195 | Msa0265040:CDS |
GGAAGCCAATGTTAATGTTG+AGG | 0.652341 | 2_2:-65257749 | Msa0265040:CDS |
ACGAATAGGTGACATTCCAA+AGG | 0.664454 | 2_2:-65256442 | Msa0265040:intron |
TTACCTGCAGCAGAATCACC+AGG | 0.670804 | 2_2:+65259368 | None:intergenic |
ATTTGTGTAGAGTTGCAACA+GGG | 0.687136 | 2_2:-65257909 | Msa0265040:intron |
TGTCAGAACAGATTACACAA+AGG | 0.693803 | 2_2:-65258418 | Msa0265040:CDS |
GAATTCGGTACTTCACAATG+AGG | 0.698419 | 2_2:+65255958 | None:intergenic |
TGAGAGTTAAAATTGTGACA+TGG | 0.716889 | 2_2:-65259782 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATAA+AGG | - | chr2_2:65259708-65259727 | Msa0265040:intron | 0.0% |
!! | TATATATATATATATATAAA+GGG | - | chr2_2:65259709-65259728 | Msa0265040:intron | 0.0% |
!!! | TTGATATTTTTATATTTGTT+TGG | + | chr2_2:65256804-65256823 | None:intergenic | 10.0% |
!! | AAAATATTACTATGTAATTA+TGG | + | chr2_2:65258458-65258477 | None:intergenic | 10.0% |
!! | TATATATATATATATAAAGG+GGG | - | chr2_2:65259711-65259730 | Msa0265040:intron | 10.0% |
!! | TACATATACATAATTTGATT+TGG | - | chr2_2:65255815-65255834 | Msa0265040:three_prime_UTR | 15.0% |
!!! | CATTTTTATGATATTTGATA+GGG | + | chr2_2:65256374-65256393 | None:intergenic | 15.0% |
!!! | GCTTTAAATATTTATTTCAA+AGG | - | chr2_2:65256446-65256465 | Msa0265040:CDS | 15.0% |
!!! | TACTTTTTGAAATTATCTAA+TGG | + | chr2_2:65257006-65257025 | None:intergenic | 15.0% |
!! | AAAATGAATGAAAAATTACA+TGG | - | chr2_2:65258020-65258039 | Msa0265040:intron | 15.0% |
!!! | GTAATATTTTTATAAAGTAG+AGG | - | chr2_2:65258468-65258487 | Msa0265040:intron | 15.0% |
!!! | TATTTAGTTCATAAGAATAT+AGG | - | chr2_2:65259517-65259536 | Msa0265040:intron | 15.0% |
!! | CATTTAAAAAAAGTTATACA+CGG | + | chr2_2:65259588-65259607 | None:intergenic | 15.0% |
!! | TTTATCAGAACAATATTTGA+TGG | + | chr2_2:65255741-65255760 | None:intergenic | 20.0% |
!! | ATTCATGTTGAAATATTACA+TGG | - | chr2_2:65256134-65256153 | Msa0265040:CDS | 20.0% |
!!! | CCATTTTTATGATATTTGAT+AGG | + | chr2_2:65256375-65256394 | None:intergenic | 20.0% |
!! | CCTATCAAATATCATAAAAA+TGG | - | chr2_2:65256372-65256391 | Msa0265040:intron | 20.0% |
!! | AAATCATAAAAATGGTCAAA+TGG | - | chr2_2:65256419-65256438 | Msa0265040:intron | 20.0% |
!! | AATCATAAAAATGGTCAAAT+GGG | - | chr2_2:65256420-65256439 | Msa0265040:intron | 20.0% |
!! | ACATGATATATTTATTAACC+AGG | - | chr2_2:65256502-65256521 | Msa0265040:CDS | 20.0% |
!!! | ATGTTAGAAATTGTTTTGTT+AGG | - | chr2_2:65256704-65256723 | Msa0265040:intron | 20.0% |
!!! | TGTTAGAAATTGTTTTGTTA+GGG | - | chr2_2:65256705-65256724 | Msa0265040:intron | 20.0% |
!!! | TCATTTTTTGAAATTGTCTT+TGG | - | chr2_2:65256891-65256910 | Msa0265040:intron | 20.0% |
!! | TTTCGTCATTAAAATTGTAA+TGG | - | chr2_2:65257779-65257798 | Msa0265040:CDS | 20.0% |
!! | TTTACTATTTAAACAGTAGT+AGG | + | chr2_2:65258003-65258022 | None:intergenic | 20.0% |
!! | TGTAATTATGGTAATAAGAA+AGG | + | chr2_2:65258446-65258465 | None:intergenic | 20.0% |
!! | TATCTATAATCTTGTTAATG+AGG | - | chr2_2:65258656-65258675 | Msa0265040:intron | 20.0% |
!! | ACATTAATATAGAACTCATT+TGG | + | chr2_2:65258720-65258739 | None:intergenic | 20.0% |
!!! | TGTTCATAAACTATTGTTTT+TGG | - | chr2_2:65258737-65258756 | Msa0265040:intron | 20.0% |
!! | TATATAGGACTAAAGTTAAA+TGG | - | chr2_2:65258989-65259008 | Msa0265040:intron | 20.0% |
!!! | AATGTGATCATTCTTTTTTA+AGG | - | chr2_2:65259058-65259077 | Msa0265040:intron | 20.0% |
!!! | AAATTTTATCCCACTAAATA+AGG | + | chr2_2:65259624-65259643 | None:intergenic | 20.0% |
! | TGATAAATTCAAGAGATGAA+AGG | + | chr2_2:65255650-65255669 | None:intergenic | 25.0% |
! | TTGATTGCATCTAGTTAAAT+TGG | - | chr2_2:65255895-65255914 | Msa0265040:three_prime_UTR | 25.0% |
! | TTGAATATAATCACATGTGT+CGG | - | chr2_2:65256244-65256263 | Msa0265040:CDS | 25.0% |
! | ATGTCTTCAATTAGAAATGT+CGG | - | chr2_2:65256293-65256312 | Msa0265040:CDS | 25.0% |
!! | GATAATTTCAAAAAGTACAG+AGG | - | chr2_2:65257009-65257028 | Msa0265040:CDS | 25.0% |
! | AAGGTTTATCATCACAAAAA+TGG | - | chr2_2:65257236-65257255 | Msa0265040:intron | 25.0% |
! | CTCTAATGATTAATCACTAA+AGG | + | chr2_2:65257380-65257399 | None:intergenic | 25.0% |
!!! | CGACACATACAATTTTTTTA+TGG | - | chr2_2:65257412-65257431 | Msa0265040:intron | 25.0% |
!!! | TTTTCAAGCCATTATTGATA+AGG | + | chr2_2:65257736-65257755 | None:intergenic | 25.0% |
! | GTCATTAAAATTGTAATGGT+TGG | - | chr2_2:65257783-65257802 | Msa0265040:CDS | 25.0% |
! | AATTTCAACGACTAAATTGA+CGG | - | chr2_2:65257929-65257948 | Msa0265040:intron | 25.0% |
! | TTTAGTCCTTGAAATTGAAA+AGG | + | chr2_2:65257956-65257975 | None:intergenic | 25.0% |
! | GAAAAATTACATGGAAGTAA+TGG | - | chr2_2:65258029-65258048 | Msa0265040:intron | 25.0% |
! | AATGGAATAAATTTCATTGC+AGG | - | chr2_2:65258047-65258066 | Msa0265040:intron | 25.0% |
!!! | TTAACATCGTGTTTTGATTT+TGG | - | chr2_2:65258131-65258150 | Msa0265040:CDS | 25.0% |
! | TGTATCAATCATTATGTGTA+TGG | + | chr2_2:65258158-65258177 | None:intergenic | 25.0% |
! | ACATGATTCTCATATAATGT+TGG | - | chr2_2:65258175-65258194 | Msa0265040:CDS | 25.0% |
!! | AATTTTCATTGAACAGTTTC+TGG | - | chr2_2:65258198-65258217 | Msa0265040:CDS | 25.0% |
!!! | TGAAATTTTAGCATACTTAC+AGG | + | chr2_2:65258251-65258270 | None:intergenic | 25.0% |
! | TACTCCAACATGAAATTAAT+AGG | + | chr2_2:65258778-65258797 | None:intergenic | 25.0% |
!!! | GAGTAACTTTTTTGGATTTT+TGG | - | chr2_2:65258793-65258812 | Msa0265040:intron | 25.0% |
!!! | AACTTTTTTGGATTTTTGGT+TGG | - | chr2_2:65258797-65258816 | Msa0265040:intron | 25.0% |
!!! | TCATCTTGGTCTTATAATTT+AGG | + | chr2_2:65259032-65259051 | None:intergenic | 25.0% |
! | ATCACATTGTTAATTCATCT+TGG | + | chr2_2:65259046-65259065 | None:intergenic | 25.0% |
!! | ATTAAAGCCTTTTACTTGTT+TGG | - | chr2_2:65259082-65259101 | Msa0265040:intron | 25.0% |
! | TTTGTATCCAAACAAGTAAA+AGG | + | chr2_2:65259092-65259111 | None:intergenic | 25.0% |
!! | AGAATGCATCTTTTACAATT+TGG | + | chr2_2:65259238-65259257 | None:intergenic | 25.0% |
! | ATCTTAGCATATTTCTTCAT+AGG | + | chr2_2:65259287-65259306 | None:intergenic | 25.0% |
! | TATGAAGAAATATGCTAAGA+TGG | - | chr2_2:65259286-65259305 | Msa0265040:intron | 25.0% |
!!! | TGGTTTTGTTGATTATGTTT+TGG | - | chr2_2:65259342-65259361 | Msa0265040:intron | 25.0% |
!!! | GATTATGTTTTGGACTATAA+AGG | - | chr2_2:65259352-65259371 | Msa0265040:intron | 25.0% |
!! | ATTCAGTATACCTTATTTAG+TGG | - | chr2_2:65259611-65259630 | Msa0265040:intron | 25.0% |
!! | TTCAGTATACCTTATTTAGT+GGG | - | chr2_2:65259612-65259631 | Msa0265040:intron | 25.0% |
! | TATATACAAATGTTGCATGT+CGG | + | chr2_2:65259665-65259684 | None:intergenic | 25.0% |
GATTATGATGATATAGACCA+TGG | - | chr2_2:65255831-65255850 | Msa0265040:three_prime_UTR | 30.0% | |
GTATATGCATATAGATACCA+TGG | + | chr2_2:65255851-65255870 | None:intergenic | 30.0% | |
TTAAAGATGTTCATAGCCAA+AGG | - | chr2_2:65255922-65255941 | Msa0265040:CDS | 30.0% | |
TATAATAGATACCAAGCCTT+TGG | + | chr2_2:65255941-65255960 | None:intergenic | 30.0% | |
GTAGATTGCAGAAAATTTGA+AGG | + | chr2_2:65256085-65256104 | None:intergenic | 30.0% | |
ATTTATTAACCAGGAAGAGT+AGG | - | chr2_2:65256511-65256530 | Msa0265040:CDS | 30.0% | |
TTTATTAACCAGGAAGAGTA+GGG | - | chr2_2:65256512-65256531 | Msa0265040:CDS | 30.0% | |
!! | TAATTTGTTATGCTTTAGCC+AGG | + | chr2_2:65256548-65256567 | None:intergenic | 30.0% |
!!! | GAGAGACAATCTTTTTTTCA+TGG | + | chr2_2:65256630-65256649 | None:intergenic | 30.0% |
GTATGTTAGTAGCTAAACTT+GGG | + | chr2_2:65256684-65256703 | None:intergenic | 30.0% | |
TGTATGTTAGTAGCTAAACT+TGG | + | chr2_2:65256685-65256704 | None:intergenic | 30.0% | |
AAGGGATAATACAATTAGAG+TGG | - | chr2_2:65256978-65256997 | Msa0265040:CDS | 30.0% | |
! | AATTTCAAAAAGTACAGAGG+AGG | - | chr2_2:65257012-65257031 | Msa0265040:CDS | 30.0% |
ACATCACCAACAAGAATTAT+TGG | - | chr2_2:65257040-65257059 | Msa0265040:intron | 30.0% | |
TACACTCCAATAATTCTTGT+TGG | + | chr2_2:65257049-65257068 | None:intergenic | 30.0% | |
GAAGTTAGACTCAAAAAAGA+GGG | + | chr2_2:65257083-65257102 | None:intergenic | 30.0% | |
TGAAGTTAGACTCAAAAAAG+AGG | + | chr2_2:65257084-65257103 | None:intergenic | 30.0% | |
TTGTAGTCTTTGATATTCAC+TGG | - | chr2_2:65257140-65257159 | Msa0265040:intron | 30.0% | |
TTGATATTCACTGGAGTATA+TGG | - | chr2_2:65257149-65257168 | Msa0265040:CDS | 30.0% | |
CATACAAAATTCCACATAGA+AGG | + | chr2_2:65257196-65257215 | None:intergenic | 30.0% | |
! | CTTCTATGTGGAATTTTGTA+TGG | - | chr2_2:65257194-65257213 | Msa0265040:intron | 30.0% |
!! | AGTTATTTTGCTGATCACAA+AGG | - | chr2_2:65257217-65257236 | Msa0265040:intron | 30.0% |
GTTTATCATCACAAAAATGG+AGG | - | chr2_2:65257239-65257258 | Msa0265040:intron | 30.0% | |
TCACAACTCTTGTAATTACA+AGG | + | chr2_2:65257287-65257306 | None:intergenic | 30.0% | |
TGATGCTTTACTAATTCCTT+TGG | - | chr2_2:65257304-65257323 | Msa0265040:CDS | 30.0% | |
GGCTATTAACATGAGAAATA+TGG | + | chr2_2:65257330-65257349 | None:intergenic | 30.0% | |
CATAATCAAAACAGCAAACA+AGG | - | chr2_2:65257547-65257566 | Msa0265040:intron | 30.0% | |
!! | AACACAACAGAAGCATTAAA+AGG | - | chr2_2:65257587-65257606 | Msa0265040:intron | 30.0% |
AAATGCAAGCTCAGAAAAAT+AGG | - | chr2_2:65257708-65257727 | Msa0265040:CDS | 30.0% | |
GTTTCTCAAACTTGTGAAAT+TGG | - | chr2_2:65257814-65257833 | Msa0265040:CDS | 30.0% | |
!! | CTTTTGTTACTCTTTTTCAC+AGG | - | chr2_2:65258336-65258355 | Msa0265040:CDS | 30.0% |
AATTAATAGGTCCAGTATGT+TGG | + | chr2_2:65258765-65258784 | None:intergenic | 30.0% | |
TGGACCTATTAATTTCATGT+TGG | - | chr2_2:65258771-65258790 | Msa0265040:intron | 30.0% | |
!!! | TCATGTTGGAGTAACTTTTT+TGG | - | chr2_2:65258785-65258804 | Msa0265040:intron | 30.0% |
AGTATTATCTGGACAATTCT+CGG | + | chr2_2:65258913-65258932 | None:intergenic | 30.0% | |
CCTATTCGTATAGTATTATC+TGG | + | chr2_2:65258924-65258943 | None:intergenic | 30.0% | |
CCAGATAATACTATACGAAT+AGG | - | chr2_2:65258921-65258940 | Msa0265040:intron | 30.0% | |
TTAGTCCTATATAAACAGCT+CGG | + | chr2_2:65258982-65259001 | None:intergenic | 30.0% | |
ACTTGTTTGGATACAAATGA+TGG | - | chr2_2:65259095-65259114 | Msa0265040:intron | 30.0% | |
CTTGTTTGGATACAAATGAT+GGG | - | chr2_2:65259096-65259115 | Msa0265040:intron | 30.0% | |
TACTTGGATACACATTCAAT+AGG | + | chr2_2:65259196-65259215 | None:intergenic | 30.0% | |
ATTGAATGTGTATCCAAGTA+TGG | - | chr2_2:65259196-65259215 | Msa0265040:intron | 30.0% | |
TCTAACAAATGTTCCATACT+TGG | + | chr2_2:65259212-65259231 | None:intergenic | 30.0% | |
AGTCATGAACATTGTTATCA+TGG | - | chr2_2:65259377-65259396 | Msa0265040:CDS | 30.0% | |
! | TTTAACTGCTCTTGATTTGA+AGG | + | chr2_2:65259444-65259463 | None:intergenic | 30.0% |
GTTCATAAGAATATAGGAAC+CGG | - | chr2_2:65259523-65259542 | Msa0265040:intron | 30.0% | |
! | AAAAGTTATACACGGATTAC+TGG | + | chr2_2:65259580-65259599 | None:intergenic | 30.0% |
! | GTTATTTCAATAGACCTTAG+AGG | - | chr2_2:65259741-65259760 | Msa0265040:five_prime_UTR | 30.0% |
AATTATACTCACTTCCTCTA+AGG | + | chr2_2:65259758-65259777 | None:intergenic | 30.0% | |
GGAAAGAACATTATGACATG+TGG | + | chr2_2:65255702-65255721 | None:intergenic | 35.0% | |
GATGGTATAAGTGAGTTACA+AGG | + | chr2_2:65255723-65255742 | None:intergenic | 35.0% | |
TTGCATCTAGTTAAATTGGC+AGG | - | chr2_2:65255899-65255918 | Msa0265040:three_prime_UTR | 35.0% | |
TTGTACTTGTAGAGACTATG+AGG | + | chr2_2:65256046-65256065 | None:intergenic | 35.0% | |
TTTCACTCATTATGAGAGAG+AGG | + | chr2_2:65256737-65256756 | None:intergenic | 35.0% | |
TGTCAGAACAGATTACACAA+AGG | - | chr2_2:65256959-65256978 | Msa0265040:CDS | 35.0% | |
GTCAGAACAGATTACACAAA+GGG | - | chr2_2:65256960-65256979 | Msa0265040:CDS | 35.0% | |
GGAGTATATGGATATGCAAT+TGG | - | chr2_2:65257161-65257180 | Msa0265040:CDS | 35.0% | |
AACATGAGAAATATGGCCAA+AGG | + | chr2_2:65257323-65257342 | None:intergenic | 35.0% | |
GATTAATCACTAAAGGCTAG+AGG | + | chr2_2:65257373-65257392 | None:intergenic | 35.0% | |
TCATGCATATACATCACTTG+AGG | + | chr2_2:65257442-65257461 | None:intergenic | 35.0% | |
ATTTGTGTAGAGTTGCAACA+GGG | - | chr2_2:65257468-65257487 | Msa0265040:intron | 35.0% | |
!!! | CTGAAGTTTTAGCTTCTGAA+TGG | + | chr2_2:65257520-65257539 | None:intergenic | 35.0% |
!! | AACAGAAGCATTAAAAGGCA+TGG | - | chr2_2:65257592-65257611 | Msa0265040:intron | 35.0% |
AGAAGCCTCAACATTAACAT+TGG | + | chr2_2:65257636-65257655 | None:intergenic | 35.0% | |
AATAGGCGCCTTATCAATAA+TGG | - | chr2_2:65257725-65257744 | Msa0265040:CDS | 35.0% | |
! | AATTTTGCACCACGAGTTAA+GGG | + | chr2_2:65257848-65257867 | None:intergenic | 35.0% |
! | AAATTTTGCACCACGAGTTA+AGG | + | chr2_2:65257849-65257868 | None:intergenic | 35.0% |
GTCGTTGAAATTTGCGAAAT+AGG | + | chr2_2:65257921-65257940 | None:intergenic | 35.0% | |
!! | CTTGCTGTAACAATTTTGTC+AGG | - | chr2_2:65258106-65258125 | Msa0265040:CDS | 35.0% |
! | GTATTATGCTGGCTATTCTT+TGG | - | chr2_2:65258386-65258405 | Msa0265040:CDS | 35.0% |
GAGCTTAAGCTGTTGTTATA+AGG | + | chr2_2:65258576-65258595 | None:intergenic | 35.0% | |
GCACTAAATTCAGATAGAAC+TGG | + | chr2_2:65258633-65258652 | None:intergenic | 35.0% | |
GTTCTATCTGAATTTAGTGC+TGG | - | chr2_2:65258633-65258652 | Msa0265040:intron | 35.0% | |
!!! | TGTTTTTGGATCCAACATAC+TGG | - | chr2_2:65258751-65258770 | Msa0265040:intron | 35.0% |
AAGGATTGCAAACAAGAACA+AGG | + | chr2_2:65258860-65258879 | None:intergenic | 35.0% | |
GTATTATCTGGACAATTCTC+GGG | + | chr2_2:65258912-65258931 | None:intergenic | 35.0% | |
ATAGGGACAAAAACTACCTT+TGG | + | chr2_2:65258954-65258973 | None:intergenic | 35.0% | |
TAAACAGCTCGGATTGTATA+GGG | + | chr2_2:65258971-65258990 | None:intergenic | 35.0% | |
ATAAACAGCTCGGATTGTAT+AGG | + | chr2_2:65258972-65258991 | None:intergenic | 35.0% | |
ACAATCCGAGCTGTTTATAT+AGG | - | chr2_2:65258974-65258993 | Msa0265040:intron | 35.0% | |
ATTTCTTCATAGGCTTGCAA+TGG | + | chr2_2:65259277-65259296 | None:intergenic | 35.0% | |
AGAAATATGCTAAGATGGCA+TGG | - | chr2_2:65259291-65259310 | Msa0265040:intron | 35.0% | |
GAAATATGCTAAGATGGCAT+GGG | - | chr2_2:65259292-65259311 | Msa0265040:intron | 35.0% | |
CATTGTTATCATGGTTCAGA+TGG | - | chr2_2:65259386-65259405 | Msa0265040:CDS | 35.0% | |
! | GCTCTTGATTTGAAGGAATT+CGG | + | chr2_2:65259437-65259456 | None:intergenic | 35.0% |
AAGAATATAGGAACCGGTAT+TGG | - | chr2_2:65259529-65259548 | Msa0265040:intron | 35.0% | |
CAGCTTGTGCTTCAATTTGT+GGG | + | chr2_2:65255984-65256003 | None:intergenic | 40.0% | |
ACAGCTTGTGCTTCAATTTG+TGG | + | chr2_2:65255985-65256004 | None:intergenic | 40.0% | |
ACTCTGATAGACACATACAC+CGG | - | chr2_2:65256168-65256187 | Msa0265040:CDS | 40.0% | |
GGCAACACACATTATCATGT+CGG | - | chr2_2:65256202-65256221 | Msa0265040:CDS | 40.0% | |
GTTAGTAGCTAAACTTGGGT+AGG | + | chr2_2:65256680-65256699 | None:intergenic | 40.0% | |
GGAATGTTATGCCTTCTATG+TGG | - | chr2_2:65257182-65257201 | Msa0265040:intron | 40.0% | |
GCAAGGTTGAATGACTTACA+TGG | + | chr2_2:65257351-65257370 | None:intergenic | 40.0% | |
GATTTGTGTAGAGTTGCAAC+AGG | - | chr2_2:65257467-65257486 | Msa0265040:intron | 40.0% | |
GGAAGCCAATGTTAATGTTG+AGG | - | chr2_2:65257628-65257647 | Msa0265040:intron | 40.0% | |
GAATTTAGTCCCTTAACTCG+TGG | - | chr2_2:65257836-65257855 | Msa0265040:CDS | 40.0% | |
! | GACGGACCTTTTCAATTTCA+AGG | - | chr2_2:65257947-65257966 | Msa0265040:intron | 40.0% |
!! | GAACAGTTTCTGGTGTACTA+CGG | - | chr2_2:65258208-65258227 | Msa0265040:CDS | 40.0% |
! | TTTCTGGTGTACTACGGTTA+AGG | - | chr2_2:65258214-65258233 | Msa0265040:CDS | 40.0% |
GGTTGTTGACAGTATTATGC+TGG | - | chr2_2:65258375-65258394 | Msa0265040:CDS | 40.0% | |
TGAGCAATTCTTGACATGGA+AGG | + | chr2_2:65258602-65258621 | None:intergenic | 40.0% | |
! | GCTTTGAGCAATTCTTGACA+TGG | + | chr2_2:65258606-65258625 | None:intergenic | 40.0% |
!!! | GGATTTTTGGTTGGTTGTCT+AGG | - | chr2_2:65258806-65258825 | Msa0265040:intron | 40.0% |
!! | GGTTGGTAGGTATAATTTGG+TGG | + | chr2_2:65258891-65258910 | None:intergenic | 40.0% |
!! | TCGGGTTGGTAGGTATAATT+TGG | + | chr2_2:65258894-65258913 | None:intergenic | 40.0% |
ACGAATAGGTGACATTCCAA+AGG | - | chr2_2:65258935-65258954 | Msa0265040:intron | 40.0% | |
! | AATGATGGGAGTTGTGACAA+TGG | - | chr2_2:65259110-65259129 | Msa0265040:intron | 40.0% |
ACAAAACCATGATCACTCCA+AGG | + | chr2_2:65259331-65259350 | None:intergenic | 40.0% | |
GAATTCGGTACTTCACAATG+AGG | + | chr2_2:65259422-65259441 | None:intergenic | 40.0% | |
! | ATATAGGAACCGGTATTGGA+AGG | - | chr2_2:65259533-65259552 | Msa0265040:intron | 40.0% |
! | GCATTTTTGCCTTCCAATAC+CGG | + | chr2_2:65259545-65259564 | None:intergenic | 40.0% |
GATGTTCATAGCCAAAGGCT+TGG | - | chr2_2:65255927-65255946 | Msa0265040:CDS | 45.0% | |
CATACACCGGACACAACATT+TGG | - | chr2_2:65256181-65256200 | Msa0265040:CDS | 45.0% | |
GTGTTGCCAAATGTTGTGTC+CGG | + | chr2_2:65256190-65256209 | None:intergenic | 45.0% | |
ATCACTAAAGGCTAGAGGCA+AGG | + | chr2_2:65257368-65257387 | None:intergenic | 45.0% | |
!! | CAACAGGGCTAGTTCTTGTA+GGG | - | chr2_2:65257483-65257502 | Msa0265040:intron | 45.0% |
AGGCATGGAGAGTAACTTGA+TGG | - | chr2_2:65257607-65257626 | Msa0265040:intron | 45.0% | |
GGAGAGACAGTAGAGCAAAT+AGG | + | chr2_2:65257982-65258001 | None:intergenic | 45.0% | |
TGGTGTACTACGGTTAAGGA+GGG | - | chr2_2:65258218-65258237 | Msa0265040:CDS | 45.0% | |
!! | ACAGGCTTGTTGTACTTTGC+TGG | - | chr2_2:65258354-65258373 | Msa0265040:CDS | 45.0% |
!! | TAATTTGGTGGCGCTGAGAA+AGG | + | chr2_2:65258879-65258898 | None:intergenic | 45.0% |
TATCTGGACAATTCTCGGGT+TGG | + | chr2_2:65258908-65258927 | None:intergenic | 45.0% | |
TAGGCTTGCAATGGTCAACA+AGG | + | chr2_2:65259268-65259287 | None:intergenic | 45.0% | |
TATGCTAAGATGGCATGGGT+AGG | - | chr2_2:65259296-65259315 | Msa0265040:intron | 45.0% | |
TAAGATGGCATGGGTAGGAA+TGG | - | chr2_2:65259301-65259320 | Msa0265040:intron | 45.0% | |
! | TCATGGTTCAGATGGTTCTG+TGG | - | chr2_2:65259394-65259413 | Msa0265040:CDS | 45.0% |
!! | AAAAAAAAAAATCATAAAAA+TGG | - | chr2_2:65256411-65256430 | Msa0265040:intron | 5.0% |
!! | ATATATATATATATATAAAG+GGG | - | chr2_2:65259710-65259729 | Msa0265040:intron | 5.0% |
TTACCTGCAGCAGAATCACC+AGG | + | chr2_2:65256012-65256031 | None:intergenic | 50.0% | |
AACCAGGAAGAGTAGGGCTA+AGG | - | chr2_2:65256518-65256537 | Msa0265040:CDS | 50.0% | |
TTCCTTAGCCCTACTCTTCC+TGG | + | chr2_2:65256523-65256542 | None:intergenic | 50.0% | |
GAGTAGGGCTAAGGAATTCC+TGG | - | chr2_2:65256527-65256546 | Msa0265040:CDS | 50.0% | |
!! | GCAACAGGGCTAGTTCTTGT+AGG | - | chr2_2:65257482-65257501 | Msa0265040:intron | 50.0% |
CTGGTGTACTACGGTTAAGG+AGG | - | chr2_2:65258217-65258236 | Msa0265040:CDS | 50.0% | |
!! | TGGACAATTCTCGGGTTGGT+AGG | + | chr2_2:65258904-65258923 | None:intergenic | 50.0% |
TGGGTAGGAATGGTGTTCCT+TGG | - | chr2_2:65259311-65259330 | Msa0265040:intron | 50.0% | |
GGTGTTCCTTGGAGTGATCA+TGG | - | chr2_2:65259322-65259341 | Msa0265040:intron | 50.0% | |
GAAGCACAAGCTGTCTCACC+TGG | - | chr2_2:65255991-65256010 | Msa0265040:CDS | 55.0% | |
TCACCTGGTGATTCTGCTGC+AGG | - | chr2_2:65256006-65256025 | Msa0265040:CDS | 55.0% | |
!! | CACATGTGTCGGTGTCACGT+CGG | - | chr2_2:65256255-65256274 | Msa0265040:CDS | 55.0% |
!! | TGTCGGTGTCACGTCGGAGT+CGG | - | chr2_2:65256261-65256280 | Msa0265040:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 65255610 | 65259789 | 65255610 | ID=Msa0265040;Name=Msa0265040 |
chr2_2 | mRNA | 65255610 | 65259789 | 65255610 | ID=Msa0265040-mRNA-1;Parent=Msa0265040;Name=Msa0265040-mRNA-1;_AED=0.12;_eAED=0.12;_QI=80|0.81|0.83|1|0.81|0.66|12|289|498 |
chr2_2 | exon | 65255610 | 65255695 | 65255610 | ID=Msa0265040-mRNA-1:exon:20488;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65255718 | 65256319 | 65255718 | ID=Msa0265040-mRNA-1:exon:20487;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65256443 | 65256571 | 65256443 | ID=Msa0265040-mRNA-1:exon:20486;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65256722 | 65256872 | 65256722 | ID=Msa0265040-mRNA-1:exon:20485;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65256959 | 65257041 | 65256959 | ID=Msa0265040-mRNA-1:exon:20484;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65257149 | 65257185 | 65257149 | ID=Msa0265040-mRNA-1:exon:20483;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65257272 | 65257330 | 65257272 | ID=Msa0265040-mRNA-1:exon:20482;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65257702 | 65257921 | 65257702 | ID=Msa0265040-mRNA-1:exon:20481;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65258048 | 65258253 | 65258048 | ID=Msa0265040-mRNA-1:exon:20480;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65258334 | 65258446 | 65258334 | ID=Msa0265040-mRNA-1:exon:20479;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65259372 | 65259490 | 65259372 | ID=Msa0265040-mRNA-1:exon:20478;Parent=Msa0265040-mRNA-1 |
chr2_2 | exon | 65259729 | 65259789 | 65259729 | ID=Msa0265040-mRNA-1:exon:20477;Parent=Msa0265040-mRNA-1 |
chr2_2 | five_prime_UTR | 65259729 | 65259789 | 65259729 | ID=Msa0265040-mRNA-1:five_prime_utr;Parent=Msa0265040-mRNA-1 |
chr2_2 | five_prime_UTR | 65259472 | 65259490 | 65259472 | ID=Msa0265040-mRNA-1:five_prime_utr;Parent=Msa0265040-mRNA-1 |
chr2_2 | CDS | 65259372 | 65259471 | 65259372 | ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1 |
chr2_2 | CDS | 65258334 | 65258446 | 65258334 | ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1 |
chr2_2 | CDS | 65258048 | 65258253 | 65258048 | ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1 |
chr2_2 | CDS | 65257702 | 65257921 | 65257702 | ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1 |
chr2_2 | CDS | 65257272 | 65257330 | 65257272 | ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1 |
chr2_2 | CDS | 65257149 | 65257185 | 65257149 | ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1 |
chr2_2 | CDS | 65256959 | 65257041 | 65256959 | ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1 |
chr2_2 | CDS | 65256722 | 65256872 | 65256722 | ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1 |
chr2_2 | CDS | 65256443 | 65256571 | 65256443 | ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1 |
chr2_2 | CDS | 65255921 | 65256319 | 65255921 | ID=Msa0265040-mRNA-1:cds;Parent=Msa0265040-mRNA-1 |
chr2_2 | three_prime_UTR | 65255718 | 65255920 | 65255718 | ID=Msa0265040-mRNA-1:three_prime_utr;Parent=Msa0265040-mRNA-1 |
chr2_2 | three_prime_UTR | 65255610 | 65255695 | 65255610 | ID=Msa0265040-mRNA-1:three_prime_utr;Parent=Msa0265040-mRNA-1 |
Gene Sequence |
Protein sequence |