AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0265300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265300 MtrunA17_Chr2g0330041 93.300 403 18 4 1 396 1 401 0.0 703
Msa0265300 MtrunA17_Chr8g0342481 57.704 331 103 16 1 319 1 306 9.67e-98 297
Msa0265300 MtrunA17_Chr8g0342541 58.675 317 100 16 1 312 1 291 1.71e-97 294
Msa0265300 MtrunA17_Chr8g0342521 53.659 369 122 20 1 366 1 323 3.81e-94 286
Msa0265300 MtrunA17_Chr1g0193371 72.180 133 37 0 1 133 1 133 4.80e-69 222
Msa0265300 MtrunA17_Chr7g0270891 71.429 133 38 0 1 133 1 133 3.55e-68 219
Msa0265300 MtrunA17_Chr2g0309911 73.529 136 35 1 1 136 1 135 4.96e-68 218
Msa0265300 MtrunA17_Chr4g0058631 76.800 125 29 0 1 125 1 125 6.99e-68 219
Msa0265300 MtrunA17_Chr3g0117091 76.000 125 30 0 1 125 1 125 1.47e-66 215
Msa0265300 MtrunA17_Chr1g0193801 69.173 133 41 0 1 133 1 133 1.73e-66 216
Msa0265300 MtrunA17_Chr1g0211161 75.610 123 30 0 3 125 4 126 5.44e-66 209
Msa0265300 MtrunA17_Chr8g0387421 76.471 119 28 0 1 119 1 119 7.46e-66 212
Msa0265300 MtrunA17_Chr5g0397231 79.091 110 23 0 1 110 1 110 5.87e-64 208
Msa0265300 MtrunA17_Chr7g0271241 74.809 131 33 0 1 131 1 131 7.24e-64 209
Msa0265300 MtrunA17_Chr4g0032401 55.152 165 66 2 11 174 16 173 9.96e-58 191
Msa0265300 MtrunA17_Chr8g0342511 94.253 87 5 0 1 87 1 87 5.52e-57 181
Msa0265300 MtrunA17_Chr3g0088461 73.394 109 29 0 8 116 18 126 6.82e-57 189
Msa0265300 MtrunA17_Chr3g0115821 50.602 166 72 2 1 163 1 159 4.74e-56 187
Msa0265300 MtrunA17_Chr8g0385321 64.800 125 44 0 1 125 1 125 4.82e-56 186
Msa0265300 MtrunA17_Chr8g0342531 89.888 89 9 0 1 89 1 89 9.91e-56 181
Msa0265300 MtrunA17_Chr3g0131121 61.069 131 51 0 1 131 1 131 2.52e-55 184
Msa0265300 MtrunA17_Chr2g0328771 73.333 105 28 0 12 116 20 124 3.18e-55 184
Msa0265300 MtrunA17_Chr1g0203411 65.517 116 40 0 1 116 1 116 2.43e-54 181
Msa0265300 MtrunA17_Chr4g0039971 60.000 125 50 0 1 125 2 126 5.16e-54 182
Msa0265300 MtrunA17_Chr8g0349261 51.220 164 69 3 1 162 1 155 9.10e-54 180
Msa0265300 MtrunA17_Chr4g0037141 60.000 125 50 0 1 125 1 125 9.45e-54 179
Msa0265300 MtrunA17_Chr5g0435101 63.559 118 43 0 6 123 5 122 2.74e-53 176
Msa0265300 MtrunA17_Chr5g0410961 57.353 136 51 1 1 136 1 129 2.77e-53 180
Msa0265300 MtrunA17_Chr7g0228891 67.241 116 38 0 1 116 1 116 3.22e-52 175
Msa0265300 MtrunA17_Chr6g0453471 54.930 142 57 1 1 142 1 135 3.54e-52 177
Msa0265300 MtrunA17_Chr6g0452271 60.000 125 50 0 1 125 1 125 5.32e-52 177
Msa0265300 MtrunA17_Chr3g0110351 61.600 125 48 0 1 125 1 125 7.23e-52 176
Msa0265300 MtrunA17_Chr7g0217741 50.000 162 71 2 1 162 1 152 1.07e-51 175
Msa0265300 MtrunA17_Chr4g0042671 60.000 125 50 0 1 125 1 125 1.81e-51 177
Msa0265300 MtrunA17_Chr4g0057031 60.800 125 49 0 1 125 1 125 1.92e-51 173
Msa0265300 MtrunA17_Chr5g0434571 61.600 125 48 0 1 125 37 161 2.08e-51 176
Msa0265300 MtrunA17_Chr1g0203441 70.370 108 32 0 9 116 10 117 7.50e-51 172
Msa0265300 MtrunA17_Chr4g0048511 53.548 155 57 3 1 154 1 141 8.61e-51 174
Msa0265300 MtrunA17_Chr2g0281071 56.934 137 51 2 1 136 1 130 8.73e-51 174
Msa0265300 MtrunA17_Chr5g0395281 61.017 118 46 0 8 125 8 125 1.96e-50 172
Msa0265300 MtrunA17_Chr8g0342461 83.333 90 14 1 1 89 1 90 2.91e-50 166
Msa0265300 MtrunA17_Chr2g0323411 56.618 136 52 1 1 136 1 129 3.39e-50 172
Msa0265300 MtrunA17_Chr4g0068061 55.970 134 53 1 1 128 1 134 5.95e-50 171
Msa0265300 MtrunA17_Chr8g0342471 82.222 90 15 1 1 89 1 90 9.23e-50 164
Msa0265300 MtrunA17_Chr1g0187761 63.793 116 42 0 1 116 1 116 1.06e-49 168
Msa0265300 MtrunA17_Chr7g0274581 60.345 116 46 0 1 116 1 116 3.29e-49 165
Msa0265300 MtrunA17_Chr2g0323351 62.162 111 42 0 7 117 7 117 1.32e-48 165
Msa0265300 MtrunA17_Chr6g0470971 68.224 107 34 0 9 115 11 117 1.49e-48 166
Msa0265300 MtrunA17_Chr1g0151941 57.983 119 49 1 1 118 1 119 1.86e-48 165
Msa0265300 MtrunA17_Chr3g0103281 58.462 130 54 0 1 130 1 130 5.76e-48 166
Msa0265300 MtrunA17_Chr2g0311221 63.303 109 40 0 2 110 4 112 5.92e-48 166
Msa0265300 MtrunA17_Chr4g0044421 60.163 123 49 0 1 123 1 123 1.10e-47 160
Msa0265300 MtrunA17_Chr1g0194951 59.524 126 51 0 1 126 1 126 1.31e-47 166
Msa0265300 MtrunA17_Chr7g0261281 59.483 116 47 0 1 116 1 116 3.42e-47 162
Msa0265300 MtrunA17_Chr1g0167661 58.974 117 48 0 1 117 1 117 5.09e-47 161
Msa0265300 MtrunA17_Chr4g0022931 59.821 112 45 0 5 116 6 117 5.90e-47 161
Msa0265300 MtrunA17_Chr4g0070611 58.621 116 48 0 1 116 1 116 6.76e-47 162
Msa0265300 MtrunA17_Chr7g0275911 58.621 116 48 0 1 116 1 116 7.64e-47 160
Msa0265300 MtrunA17_Chr4g0070641 58.621 116 48 0 1 116 1 116 1.56e-46 157
Msa0265300 MtrunA17_Chr3g0121241 56.667 120 52 0 6 125 36 155 3.11e-46 160
Msa0265300 MtrunA17_Chr4g0022901 59.292 113 46 0 5 117 6 118 5.38e-46 159
Msa0265300 MtrunA17_Chr1g0167691 58.120 117 49 0 1 117 1 117 7.71e-46 158
Msa0265300 MtrunA17_Chr4g0028311 57.377 122 51 1 1 121 1 122 1.74e-45 159
Msa0265300 MtrunA17_Chr7g0228231 59.483 116 45 1 1 114 1 116 1.84e-45 155
Msa0265300 MtrunA17_Chr7g0217221 58.621 116 48 0 1 116 1 116 3.26e-45 157
Msa0265300 MtrunA17_Chr6g0450101 60.909 110 43 0 11 120 13 122 3.55e-45 155
Msa0265300 MtrunA17_Chr8g0346561 56.897 116 50 0 1 116 1 116 2.97e-44 155
Msa0265300 MtrunA17_Chr4g0022911 56.637 113 49 0 5 117 6 118 3.87e-44 155
Msa0265300 MtrunA17_Chr1g0152011 57.143 119 50 1 1 118 1 119 5.42e-44 155
Msa0265300 MtrunA17_Chr7g0254411 56.897 116 50 0 1 116 1 116 1.55e-43 154
Msa0265300 MtrunA17_Chr5g0400821 55.833 120 52 1 1 119 1 120 1.96e-43 153
Msa0265300 MtrunA17_Chr3g0135311 54.622 119 53 1 1 118 1 119 4.26e-43 153
Msa0265300 MtrunA17_Chr7g0269831 55.639 133 57 1 1 133 1 131 5.11e-43 153
Msa0265300 MtrunA17_Chr7g0264641 56.303 119 51 1 1 118 1 119 6.16e-43 151
Msa0265300 MtrunA17_Chr4g0060721 55.172 116 52 0 1 116 2 117 1.01e-42 152
Msa0265300 MtrunA17_Chr1g0168661 56.250 112 49 0 4 115 13 124 1.69e-42 149
Msa0265300 MtrunA17_Chr3g0092401 58.559 111 46 0 6 116 7 117 1.72e-42 151
Msa0265300 MtrunA17_Chr1g0209661 58.095 105 44 0 11 115 26 130 1.88e-42 151
Msa0265300 MtrunA17_Chr5g0417821 57.895 114 48 0 12 125 7 120 7.80e-42 149
Msa0265300 MtrunA17_Chr6g0453211 59.048 105 43 0 6 110 6 110 2.19e-41 148
Msa0265300 MtrunA17_Chr4g0054391 60.000 110 43 1 1 109 1 110 2.88e-41 147
Msa0265300 MtrunA17_Chr2g0327351 57.658 111 46 1 1 110 1 111 3.28e-41 148
Msa0265300 MtrunA17_Chr1g0186061 55.856 111 49 0 5 115 13 123 6.05e-41 145
Msa0265300 MtrunA17_Chr4g0022881 56.075 107 47 0 8 114 8 114 1.01e-40 144
Msa0265300 MtrunA17_Chr4g0022891 44.025 159 78 3 8 161 8 160 5.21e-40 142
Msa0265300 MtrunA17_Chr1g0194291 53.509 114 53 0 2 115 11 124 8.59e-40 142
Msa0265300 MtrunA17_Chr8g0343831 57.009 107 46 0 10 116 6 112 9.71e-40 142
Msa0265300 MtrunA17_Chr8g0354661 57.692 104 44 0 12 115 37 140 2.01e-39 147
Msa0265300 MtrunA17_Chr4g0055981 57.944 107 45 0 9 115 52 158 4.69e-39 139
Msa0265300 MtrunA17_Chr1g0154031 57.692 104 44 0 12 115 76 179 5.40e-39 144
Msa0265300 MtrunA17_Chr6g0487491 43.523 193 91 6 1 175 1 193 6.97e-39 140
Msa0265300 MtrunA17_Chr3g0099131 57.692 104 44 0 12 115 41 144 7.28e-39 146
Msa0265300 MtrunA17_Chr1g0194301 53.846 104 48 0 12 115 33 136 1.41e-38 139
Msa0265300 MtrunA17_Chr4g0072751 54.955 111 49 1 1 110 1 111 2.04e-38 141
Msa0265300 MtrunA17_Chr4g0042611 62.500 88 33 0 1 88 1 88 2.29e-38 133
Msa0265300 MtrunA17_Chr3g0080861 55.769 104 46 0 12 115 37 140 2.38e-38 144
Msa0265300 MtrunA17_Chr7g0240821 59.000 100 41 0 17 116 6 105 7.02e-38 136
Msa0265300 MtrunA17_Chr1g0180391 52.381 105 50 0 12 116 19 123 1.22e-37 135
Msa0265300 MtrunA17_Chr2g0327821 42.143 140 75 2 9 144 3 140 3.90e-37 134
Msa0265300 MtrunA17_Chr5g0434911 51.327 113 55 0 7 119 16 128 2.24e-36 134
Msa0265300 MtrunA17_Chr5g0434931 50.893 112 55 0 10 121 33 144 3.84e-36 133
Msa0265300 MtrunA17_Chr2g0322521 57.009 107 46 0 9 115 26 132 4.81e-36 135
Msa0265300 MtrunA17_Chr7g0247131 67.470 83 27 0 43 125 9 91 5.52e-36 132
Msa0265300 MtrunA17_Chr7g0220341 55.963 109 46 1 12 118 25 133 1.23e-35 132
Msa0265300 MtrunA17_Chr4g0030881 50.000 110 48 1 13 115 8 117 1.78e-35 131
Msa0265300 MtrunA17_Chr2g0293911 56.311 103 45 0 12 114 24 126 2.36e-35 132
Msa0265300 MtrunA17_Chr4g0068921 55.340 103 46 0 12 114 24 126 4.53e-35 128
Msa0265300 MtrunA17_Chr5g0434831 52.778 108 51 0 10 117 5 112 5.20e-35 127
Msa0265300 MtrunA17_Chr7g0228991 51.818 110 53 0 10 119 27 136 4.84e-34 127
Msa0265300 MtrunA17_Chr8g0360111 53.333 105 49 0 8 112 21 125 8.65e-34 126
Msa0265300 MtrunA17_Chr2g0294811 57.955 88 37 0 1 88 1 88 9.34e-34 122
Msa0265300 MtrunA17_Chr1g0192411 52.381 105 50 0 11 115 11 115 1.25e-33 129
Msa0265300 MtrunA17_Chr8g0334881 50.893 112 54 1 4 114 2 113 6.39e-33 125
Msa0265300 MtrunA17_Chr2g0323321 58.140 86 36 0 7 92 6 91 1.01e-32 119
Msa0265300 MtrunA17_Chr5g0434841 50.000 108 54 0 10 117 18 125 1.14e-32 125
Msa0265300 MtrunA17_Chr5g0440781 50.000 104 51 1 12 114 12 115 5.44e-32 119
Msa0265300 MtrunA17_Chr4g0013361 50.000 114 56 1 12 124 10 123 1.15e-31 122
Msa0265300 MtrunA17_Chr5g0440761 50.000 104 51 1 12 114 12 115 1.90e-31 120
Msa0265300 MtrunA17_Chr5g0441141 50.000 104 51 1 12 114 12 115 2.35e-31 120
Msa0265300 MtrunA17_Chr5g0395221 58.750 80 33 0 9 88 9 88 1.91e-29 109
Msa0265300 MtrunA17_Chr5g0441131 47.115 104 54 1 12 114 9 112 1.16e-28 110
Msa0265300 MtrunA17_Chr4g0053431 45.312 128 63 2 14 135 5 131 1.37e-28 112
Msa0265300 MtrunA17_Chr3g0099141 54.878 82 37 0 12 93 40 121 3.67e-28 107
Msa0265300 MtrunA17_Chr5g0401731 34.031 191 90 6 3 169 2 180 8.44e-27 109
Msa0265300 MtrunA17_Chr4g0008551 50.000 106 49 3 11 115 36 138 1.01e-26 109
Msa0265300 MtrunA17_Chr3g0139671 45.000 120 62 3 14 132 85 201 3.49e-26 110
Msa0265300 MtrunA17_Chr5g0429661 29.851 201 109 5 14 184 122 320 4.59e-26 107
Msa0265300 MtrunA17_Chr7g0238631 50.000 104 49 2 14 116 113 214 5.01e-26 109
Msa0265300 MtrunA17_Chr6g0454921 48.649 111 52 3 8 115 7 115 5.69e-26 103
Msa0265300 MtrunA17_Chr6g0480581 52.083 96 43 2 14 108 4 97 1.24e-25 103
Msa0265300 MtrunA17_Chr4g0058991 44.444 108 57 2 9 115 204 309 7.23e-25 105
Msa0265300 MtrunA17_Chr1g0157731 46.729 107 54 2 14 119 91 195 1.44e-24 106
Msa0265300 MtrunA17_Chr3g0133601 33.854 192 103 5 8 185 31 212 2.26e-24 100
Msa0265300 MtrunA17_Chr7g0229101 59.155 71 29 0 43 113 3 73 2.95e-24 99.4
Msa0265300 MtrunA17_Chr4g0042501 45.217 115 55 3 2 115 98 205 4.18e-24 103
Msa0265300 MtrunA17_Chr7g0229131 56.000 75 33 0 43 117 3 77 5.73e-24 97.4
Msa0265300 MtrunA17_Chr5g0437321 48.113 106 51 3 8 112 14 116 1.03e-23 99.8
Msa0265300 MtrunA17_Chr5g0417621 46.226 106 54 2 11 115 131 234 1.49e-23 101
Msa0265300 MtrunA17_Chr5g0434901 58.824 68 28 0 46 113 7 74 2.75e-23 94.0
Msa0265300 MtrunA17_Chr6g0460661 47.253 91 45 2 17 106 19 107 5.27e-23 94.7
Msa0265300 MtrunA17_Chr1g0177901 36.774 155 67 6 24 163 7 145 7.44e-23 95.5
Msa0265300 MtrunA17_Chr7g0228531 44.118 102 55 2 14 115 220 319 1.01e-22 99.4
Msa0265300 MtrunA17_Chr3g0125801 48.544 103 50 2 14 115 16 116 1.03e-22 97.1
Msa0265300 MtrunA17_Chr3g0117511 42.718 103 56 2 14 115 183 283 1.21e-22 99.4
Msa0265300 MtrunA17_Chr6g0453751 49.451 91 37 2 12 93 20 110 5.45e-22 90.9
Msa0265300 MtrunA17_Chr5g0425591 48.193 83 42 1 13 94 10 92 2.47e-21 87.8
Msa0265300 MtrunA17_Chr3g0093811 47.778 90 47 0 43 132 13 102 2.88e-21 92.4
Msa0265300 MtrunA17_Chr7g0228401 44.944 89 48 1 25 113 290 377 2.15e-20 92.8
Msa0265300 MtrunA17_Chr7g0254261 43.119 109 54 3 1 108 81 182 2.80e-20 91.3
Msa0265300 MtrunA17_Chr5g0397841 45.000 100 51 3 12 110 109 205 3.24e-20 92.4
Msa0265300 MtrunA17_Chr6g0460671 41.748 103 57 2 14 115 99 199 2.05e-19 88.6
Msa0265300 MtrunA17_Chr7g0228481 39.216 102 60 2 12 113 218 317 7.15e-19 87.8
Msa0265300 MtrunA17_Chr5g0416341 40.404 99 58 1 17 115 29 126 1.12e-17 84.7
Msa0265300 MtrunA17_Chr7g0233061 36.792 106 62 4 14 119 180 280 4.85e-17 82.0
Msa0265300 MtrunA17_Chr8g0362231 31.447 159 99 3 17 167 25 181 5.07e-17 82.4
Msa0265300 MtrunA17_Chr7g0238651 39.796 98 57 1 14 109 7 104 7.53e-17 81.3
Msa0265300 MtrunA17_Chr1g0193901 51.471 68 33 0 1 68 1 68 4.81e-16 73.6
Msa0265300 MtrunA17_Chr1g0193891 51.471 68 33 0 1 68 1 68 4.81e-16 73.6
Msa0265300 MtrunA17_Chr1g0193871 51.471 68 33 0 1 68 1 68 4.81e-16 73.6
Msa0265300 MtrunA17_Chr1g0193881 51.471 68 33 0 1 68 1 68 4.81e-16 73.6
Msa0265300 MtrunA17_Chr3g0104491 47.059 51 27 0 65 115 17 67 6.35e-12 65.9
Msa0265300 MtrunA17_Chr5g0434871 55.556 45 20 0 74 118 2 46 9.87e-12 60.5
Msa0265300 MtrunA17_Chr7g0247141 53.191 47 21 1 1 46 1 47 1.30e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265300 AT3G13890.2 45.930 344 161 9 1 324 1 339 9.75e-76 239
Msa0265300 AT3G13890.1 44.759 353 161 10 1 324 1 348 1.64e-72 231
Msa0265300 AT5G26660.1 77.600 125 28 0 1 125 1 125 1.81e-69 223
Msa0265300 AT1G09540.1 70.922 141 35 1 1 135 1 141 2.40e-69 223
Msa0265300 AT1G57560.1 69.065 139 43 0 1 139 1 139 1.94e-68 219
Msa0265300 AT4G01680.3 71.970 132 37 0 1 132 1 132 3.60e-68 216
Msa0265300 AT1G57560.2 74.400 125 32 0 1 125 1 125 5.61e-68 216
Msa0265300 AT4G01680.1 71.970 132 37 0 1 132 1 132 3.44e-67 216
Msa0265300 AT3G12720.1 77.600 125 27 1 1 125 12 135 4.32e-67 215
Msa0265300 AT1G63910.1 79.310 116 24 0 1 116 1 116 1.60e-66 216
Msa0265300 AT4G01680.2 65.972 144 37 1 1 132 1 144 1.16e-63 207
Msa0265300 AT5G12870.1 75.701 107 26 0 10 116 16 122 3.04e-56 186
Msa0265300 AT4G09460.1 51.786 168 72 2 1 168 1 159 9.11e-56 184
Msa0265300 AT3G08500.1 70.085 117 32 1 3 116 18 134 2.79e-55 186
Msa0265300 AT4G12350.1 54.140 157 68 1 1 153 1 157 4.20e-55 184
Msa0265300 AT2G16720.1 53.205 156 66 2 1 149 1 156 1.13e-54 182
Msa0265300 AT1G22640.1 60.800 125 49 0 1 125 1 125 2.28e-54 181
Msa0265300 AT4G38620.1 60.800 125 49 0 1 125 1 125 4.09e-54 181
Msa0265300 AT3G02940.2 59.200 125 51 0 1 125 1 125 7.19e-54 181
Msa0265300 AT3G61250.1 61.600 125 48 0 1 125 1 125 1.01e-53 180
Msa0265300 AT3G02940.1 59.200 125 51 0 1 125 1 125 1.61e-53 181
Msa0265300 AT3G02940.3 59.200 125 51 0 1 125 1 125 1.61e-53 181
Msa0265300 AT4G34990.1 60.800 125 49 0 1 125 1 125 1.91e-53 179
Msa0265300 AT5G65230.1 56.429 140 54 1 1 140 1 133 2.24e-53 180
Msa0265300 AT5G15310.4 50.943 159 71 1 1 159 1 152 3.05e-53 177
Msa0265300 AT3G01140.2 60.000 125 50 0 1 125 1 125 3.09e-53 181
Msa0265300 AT5G10280.1 48.023 177 81 2 1 177 1 166 3.16e-53 180
Msa0265300 AT5G15310.1 50.943 159 71 1 1 159 1 152 3.95e-53 179
Msa0265300 AT5G15310.2 50.943 159 71 1 1 159 1 152 5.82e-53 179
Msa0265300 AT1G35515.1 52.667 150 65 2 1 145 1 149 7.36e-53 175
Msa0265300 AT1G34670.1 57.576 132 56 0 1 132 1 132 8.09e-53 180
Msa0265300 AT4G22680.1 62.400 125 47 0 1 125 1 125 2.55e-52 176
Msa0265300 AT4G21440.1 56.618 136 52 1 1 136 1 129 3.49e-52 178
Msa0265300 AT5G16770.4 48.765 162 82 1 1 162 1 161 3.89e-52 177
Msa0265300 AT5G16770.3 48.765 162 82 1 1 162 1 161 3.89e-52 177
Msa0265300 AT5G54230.1 59.559 136 48 1 1 136 1 129 4.56e-52 177
Msa0265300 AT4G05100.1 56.934 137 51 2 1 136 1 130 7.23e-52 176
Msa0265300 AT5G16770.1 48.765 162 82 1 1 162 1 161 9.27e-52 176
Msa0265300 AT5G16770.2 48.765 162 82 1 1 162 1 161 9.27e-52 176
Msa0265300 AT2G31180.1 66.379 116 39 0 1 116 1 116 1.03e-51 174
Msa0265300 AT1G06180.1 51.807 166 70 2 1 156 1 166 1.85e-51 173
Msa0265300 AT4G17785.2 59.524 126 50 1 1 125 1 126 2.03e-51 176
Msa0265300 AT3G01140.1 60.833 120 47 0 6 125 49 168 2.41e-51 177
Msa0265300 AT4G17785.1 59.524 126 50 1 1 125 1 126 2.62e-51 176
Msa0265300 AT1G66230.1 60.800 125 49 0 1 125 1 125 4.03e-51 173
Msa0265300 AT5G16600.1 54.248 153 68 1 1 151 1 153 4.48e-51 174
Msa0265300 AT4G28110.1 55.147 136 54 1 1 136 1 129 1.67e-50 171
Msa0265300 AT5G14340.1 59.091 132 54 0 1 132 13 144 2.63e-50 171
Msa0265300 AT2G47460.1 61.475 122 45 1 1 122 1 120 6.75e-50 172
Msa0265300 AT3G23250.1 58.065 124 50 1 1 124 1 122 1.32e-49 169
Msa0265300 AT5G56110.1 58.462 130 54 0 1 130 1 130 2.98e-49 169
Msa0265300 AT1G56160.1 64.348 115 41 0 2 116 4 118 3.90e-49 168
Msa0265300 AT5G60890.1 60.360 111 44 0 6 116 6 116 5.38e-49 168
Msa0265300 AT1G79180.1 63.478 115 42 0 2 116 4 118 9.09e-49 167
Msa0265300 AT5G52260.1 66.055 109 37 0 9 117 9 117 1.70e-48 166
Msa0265300 AT3G48920.1 62.617 107 40 0 8 114 14 120 5.10e-48 164
Msa0265300 AT5G23000.1 61.017 118 45 1 1 117 1 118 1.69e-47 165
Msa0265300 AT5G49330.1 58.537 123 51 0 1 123 1 123 1.79e-47 165
Msa0265300 AT3G27810.1 40.444 225 118 4 9 232 17 226 2.78e-47 161
Msa0265300 AT1G16490.1 61.864 118 45 0 2 119 4 121 3.18e-47 162
Msa0265300 AT5G61420.2 52.800 125 59 0 1 125 1 125 4.83e-47 165
Msa0265300 AT3G62610.1 56.452 124 54 0 1 124 1 124 6.76e-47 164
Msa0265300 AT3G13540.1 56.667 120 52 0 6 125 17 136 1.82e-46 160
Msa0265300 AT1G74430.1 55.200 125 56 0 1 125 1 125 1.85e-46 160
Msa0265300 AT5G62320.1 51.852 135 58 1 2 129 3 137 2.31e-46 159
Msa0265300 AT5G07690.1 53.600 125 58 0 1 125 1 125 2.56e-46 162
Msa0265300 AT3G28470.1 54.362 149 61 1 1 142 1 149 4.30e-46 161
Msa0265300 AT4G25560.1 63.889 108 39 0 10 117 8 115 5.94e-46 159
Msa0265300 AT5G40350.1 42.623 183 93 2 11 183 16 196 6.18e-46 157
Msa0265300 AT1G18570.1 54.545 121 54 1 6 125 6 126 6.29e-46 161
Msa0265300 AT5G07700.1 53.600 125 58 0 1 125 1 125 1.34e-45 160
Msa0265300 AT5G07700.2 53.600 125 58 0 1 125 1 125 1.34e-45 160
Msa0265300 AT3G12820.1 58.678 121 48 1 1 119 1 121 1.50e-45 157
Msa0265300 AT5G57620.1 56.667 120 51 1 1 119 1 120 5.50e-45 158
Msa0265300 AT3G01530.1 60.952 105 41 0 12 116 25 129 1.08e-44 154
Msa0265300 AT1G08810.1 56.667 120 52 0 1 120 1 120 1.49e-44 155
Msa0265300 AT5G65790.1 57.627 118 49 1 1 117 1 118 2.77e-44 157
Msa0265300 AT1G74650.1 57.025 121 52 0 1 121 1 121 3.68e-44 156
Msa0265300 AT1G74080.1 53.175 126 59 0 6 131 6 131 5.30e-44 156
Msa0265300 AT3G49690.1 56.780 118 50 1 1 117 1 118 5.39e-44 155
Msa0265300 AT3G47600.1 57.759 116 49 0 1 116 1 116 6.67e-44 155
Msa0265300 AT5G14750.1 58.333 108 45 0 13 120 17 124 4.08e-43 149
Msa0265300 AT5G52600.1 61.111 108 42 0 8 115 8 115 4.28e-43 149
Msa0265300 AT5G62470.2 57.759 116 49 0 1 116 1 116 5.13e-43 154
Msa0265300 AT2G36890.1 55.462 119 52 1 1 118 1 119 7.46e-43 152
Msa0265300 AT1G18710.1 52.800 125 59 0 1 125 1 125 8.20e-43 151
Msa0265300 AT3G27920.1 51.587 126 60 1 10 135 12 136 8.82e-43 149
Msa0265300 AT2G36890.2 55.462 119 52 1 1 118 42 160 1.06e-42 152
Msa0265300 AT4G37780.1 55.462 119 52 1 1 118 1 119 1.27e-42 151
Msa0265300 AT5G40330.1 58.654 104 43 0 13 116 13 116 4.77e-42 147
Msa0265300 AT1G79180.2 49.324 148 42 1 2 116 4 151 4.93e-42 150
Msa0265300 AT5G35550.1 59.259 108 44 0 9 116 11 118 6.13e-42 148
Msa0265300 AT3G28910.1 57.658 111 47 0 6 116 6 116 1.57e-41 149
Msa0265300 AT1G48000.1 57.143 112 46 1 11 120 31 142 2.37e-41 146
Msa0265300 AT5G62470.1 57.759 116 48 1 1 116 1 115 3.59e-41 149
Msa0265300 AT3G30210.1 55.085 118 50 1 13 127 28 145 3.73e-41 147
Msa0265300 AT1G68320.1 56.604 106 46 0 10 115 17 122 6.12e-41 146
Msa0265300 AT4G13480.1 61.165 103 40 0 13 115 7 109 7.14e-41 145
Msa0265300 AT3G24310.1 59.434 106 43 0 13 118 19 124 1.31e-40 145
Msa0265300 AT4G26930.1 58.252 103 43 0 12 114 19 121 6.30e-40 146
Msa0265300 AT5G06100.1 58.654 104 43 0 12 115 32 135 8.27e-40 147
Msa0265300 AT3G11440.2 53.509 114 53 0 2 115 31 144 8.88e-40 147
Msa0265300 AT5G06100.5 58.654 104 43 0 12 115 32 135 3.10e-39 147
Msa0265300 AT5G06100.2 58.654 104 43 0 12 115 32 135 3.10e-39 147
Msa0265300 AT5G06100.3 58.654 104 43 0 12 115 32 135 3.10e-39 147
Msa0265300 AT5G06100.4 58.654 104 43 0 12 115 32 135 3.10e-39 147
Msa0265300 AT3G11440.3 53.509 114 53 0 2 115 31 144 3.46e-39 147
Msa0265300 AT3G11440.4 53.509 114 53 0 2 115 31 144 3.46e-39 147
Msa0265300 AT3G11440.1 53.509 114 53 0 2 115 31 144 3.46e-39 147
Msa0265300 AT1G25340.1 55.340 103 46 0 13 115 19 121 7.89e-39 140
Msa0265300 AT2G26960.1 54.717 106 48 0 9 114 17 122 1.70e-38 143
Msa0265300 AT2G32460.2 54.717 106 48 0 10 115 4 109 2.00e-38 144
Msa0265300 AT2G32460.1 54.717 106 48 0 10 115 16 121 2.28e-38 144
Msa0265300 AT5G26660.2 75.309 81 20 0 45 125 14 94 4.17e-38 140
Msa0265300 AT5G55020.1 57.143 105 45 0 12 116 26 130 1.18e-37 143
Msa0265300 AT5G59780.3 51.402 107 52 0 9 115 5 111 1.25e-36 134
Msa0265300 AT2G47190.1 49.038 104 53 0 12 115 20 123 1.33e-36 134
Msa0265300 AT3G06490.1 57.009 107 46 0 8 114 15 121 1.43e-36 136
Msa0265300 AT3G46130.1 52.427 103 49 0 13 115 10 112 5.57e-36 132
Msa0265300 AT5G49620.1 58.252 103 43 0 12 114 26 128 1.37e-35 133
Msa0265300 AT3G60460.1 55.046 109 48 1 7 114 6 114 5.18e-35 131
Msa0265300 AT3G53200.1 47.788 113 59 0 9 121 6 118 9.47e-35 129
Msa0265300 AT1G66370.1 51.887 106 51 0 10 115 6 111 6.92e-34 126
Msa0265300 AT1G25340.2 52.427 103 44 1 13 115 19 116 6.95e-34 127
Msa0265300 AT3G27810.2 38.624 189 100 4 45 232 4 177 1.03e-33 124
Msa0265300 AT1G25340.3 52.427 103 44 1 13 115 19 116 1.15e-33 127
Msa0265300 AT2G26950.1 48.039 102 53 0 9 110 13 114 4.65e-32 125
Msa0265300 AT5G40350.2 40.268 149 77 2 45 183 5 151 6.15e-32 119
Msa0265300 AT5G49620.2 51.282 117 43 1 12 114 26 142 6.33e-32 123
Msa0265300 AT1G66380.1 54.717 106 48 0 10 115 6 111 2.34e-31 116
Msa0265300 AT1G56650.1 45.985 137 64 2 10 136 6 142 6.16e-31 119
Msa0265300 AT5G14750.3 65.753 73 25 0 48 120 18 90 7.41e-30 113
Msa0265300 AT1G66390.1 53.774 106 49 0 10 115 6 111 1.13e-29 115
Msa0265300 AT5G35550.2 66.216 74 25 0 43 116 48 121 1.92e-29 115
Msa0265300 AT5G40360.1 40.541 148 78 5 9 154 153 292 8.81e-29 115
Msa0265300 AT3G46130.3 62.500 72 27 0 44 115 9 80 1.92e-28 111
Msa0265300 AT5G59780.2 63.380 71 26 0 45 115 20 90 3.68e-28 110
Msa0265300 AT3G46130.4 63.380 71 26 0 45 115 20 90 5.19e-28 110
Msa0265300 AT3G47600.2 52.688 93 40 1 24 116 22 110 1.45e-27 111
Msa0265300 AT3G12820.2 62.500 72 27 0 48 119 2 73 1.96e-27 107
Msa0265300 AT5G11050.1 45.631 103 53 2 14 115 105 205 4.39e-26 109
Msa0265300 AT4G18770.1 44.954 109 57 2 9 116 212 318 4.45e-26 109
Msa0265300 AT3G53200.2 54.545 77 35 0 45 121 9 85 5.08e-26 104
Msa0265300 AT3G27785.1 35.948 153 84 4 9 156 184 327 5.58e-26 108
Msa0265300 AT3G50060.1 43.704 135 73 2 14 147 6 138 6.01e-26 106
Msa0265300 AT5G58850.1 44.660 103 54 2 14 115 105 205 9.60e-26 108
Msa0265300 AT5G67300.1 48.148 108 53 2 14 120 6 111 3.86e-25 104
Msa0265300 AT5G02320.3 47.115 104 52 2 14 116 67 168 4.82e-25 107
Msa0265300 AT5G02320.1 47.115 104 52 2 14 116 127 228 5.09e-25 107
Msa0265300 AT5G02320.2 47.115 104 52 2 14 116 127 228 5.09e-25 107
Msa0265300 AT1G69560.2 31.527 203 116 6 2 197 114 300 5.65e-25 104
Msa0265300 AT1G69560.1 31.527 203 116 6 2 197 98 284 5.73e-25 104
Msa0265300 AT5G11510.3 46.729 107 54 2 14 119 81 185 6.43e-25 107
Msa0265300 AT5G11510.1 46.729 107 54 2 14 119 81 185 6.43e-25 107
Msa0265300 AT5G11510.4 46.729 107 54 2 14 119 81 185 6.43e-25 107
Msa0265300 AT5G11510.2 46.729 107 54 2 14 119 81 185 7.93e-25 107
Msa0265300 AT5G11510.5 46.729 107 54 2 14 119 81 185 7.99e-25 107
Msa0265300 AT1G22640.3 63.235 68 25 0 58 125 1 68 1.64e-24 100
Msa0265300 AT3G09230.1 45.902 122 60 4 1 121 43 159 3.08e-24 103
Msa0265300 AT3G09370.1 47.573 103 51 2 14 115 130 230 3.73e-24 104
Msa0265300 AT3G09370.2 47.573 103 51 2 14 115 135 235 3.90e-24 104
Msa0265300 AT3G09370.3 47.573 103 51 2 14 115 143 243 5.87e-24 103
Msa0265300 AT4G32730.1 45.794 107 55 2 14 119 87 191 7.40e-24 104
Msa0265300 AT2G39880.1 48.624 109 52 3 8 115 45 150 7.41e-24 102
Msa0265300 AT4G32730.5 45.794 107 55 2 14 119 87 191 7.51e-24 104
Msa0265300 AT4G32730.4 45.794 107 55 2 14 119 87 191 7.51e-24 104
Msa0265300 AT4G32730.3 45.794 107 55 2 14 119 87 191 7.51e-24 104
Msa0265300 AT4G32730.2 45.794 107 55 2 14 119 87 191 7.51e-24 104
Msa0265300 AT3G55730.1 50.000 108 50 3 9 115 52 156 7.58e-24 102
Msa0265300 AT1G26780.1 44.037 109 58 2 12 119 96 202 1.12e-23 100
Msa0265300 AT1G26780.2 44.037 109 58 2 12 119 96 202 1.74e-23 100
Msa0265300 AT1G17950.1 43.220 118 54 3 14 120 5 120 3.42e-23 97.8
Msa0265300 AT4G37260.1 46.789 109 54 3 8 115 8 113 6.87e-23 98.6
Msa0265300 AT1G73410.1 46.602 103 52 2 14 115 6 106 1.47e-22 95.9
Msa0265300 AT1G18960.1 43.860 114 54 5 5 116 4 109 1.78e-22 97.1
Msa0265300 AT1G66380.3 58.442 77 32 0 39 115 2 78 2.13e-22 91.7
Msa0265300 AT2G23290.1 47.573 103 51 2 14 115 13 113 2.99e-22 96.7
Msa0265300 AT1G73410.2 46.602 103 52 2 14 115 6 106 3.49e-22 94.0
Msa0265300 AT4G33450.1 40.769 130 72 4 2 129 6 132 1.40e-21 93.6
Msa0265300 AT5G14750.4 62.712 59 22 0 58 116 1 59 7.29e-21 88.6
Msa0265300 AT5G14750.2 62.712 59 22 0 58 116 1 59 7.29e-21 88.6
Msa0265300 AT1G71030.2 52.703 74 35 0 51 124 5 78 3.91e-20 87.8
Msa0265300 AT3G23250.2 56.716 67 27 1 58 124 1 65 4.76e-20 88.6
Msa0265300 AT1G71030.1 52.703 74 35 0 51 124 19 92 5.78e-20 87.4
Msa0265300 AT2G25230.1 40.404 99 56 2 17 114 29 125 6.04e-20 88.6
Msa0265300 AT1G66380.2 51.220 82 40 0 8 89 4 85 6.11e-20 84.7
Msa0265300 AT5G17800.1 40.741 108 63 1 1 108 80 186 6.52e-20 90.1
Msa0265300 AT3G29020.2 40.385 104 59 2 14 116 67 168 1.23e-19 89.0
Msa0265300 AT3G29020.1 40.385 104 59 2 14 116 65 166 1.28e-19 87.4
Msa0265300 AT2G02820.3 42.424 99 56 1 17 115 33 130 3.09e-19 88.2
Msa0265300 AT2G02820.1 42.424 99 56 1 17 115 33 130 4.01e-19 89.4
Msa0265300 AT2G02820.2 42.424 99 56 1 17 115 33 130 5.50e-19 89.0
Msa0265300 AT4G00540.2 41.284 109 58 3 12 116 101 207 1.28e-18 87.4
Msa0265300 AT4G00540.1 41.284 109 58 3 12 116 99 205 2.21e-18 87.0
Msa0265300 AT1G14350.2 42.424 99 56 1 17 115 28 125 7.06e-18 85.5
Msa0265300 AT1G14350.1 42.424 99 56 1 17 115 28 125 7.06e-18 85.5
Msa0265300 AT5G40430.1 36.449 107 64 3 9 114 49 152 2.94e-16 78.6
Msa0265300 AT2G37630.1 39.394 99 58 1 13 109 3 101 1.61e-15 77.8
Msa0265300 AT5G39700.1 33.962 106 69 1 9 114 51 155 1.31e-13 69.3
Msa0265300 AT5G59780.1 56.522 46 20 0 70 115 1 46 1.61e-13 68.6
Msa0265300 AT3G46130.2 56.522 46 20 0 70 115 1 46 2.25e-13 68.9
Msa0265300 AT1G14350.3 50.000 60 30 0 56 115 23 82 4.91e-13 70.5
Msa0265300 AT1G14350.4 50.000 60 30 0 56 115 23 82 4.91e-13 70.5
Msa0265300 AT4G25560.2 59.574 47 19 0 71 117 3 49 1.11e-12 67.4
Msa0265300 AT1G74650.3 57.778 45 19 0 77 121 1 45 3.76e-11 63.5

Find 66 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGGTGGTACTGTTTC+AGG 0.149644 2_2:+65543526 None:intergenic
ATTGAACTTCATACCATTCT+AGG 0.153660 2_2:-65544019 Msa0265300:CDS
ACAAACATAATTATCCTTAT+TGG 0.182467 2_2:+65543270 None:intergenic
CTTTCAACAGAACCATTTCT+AGG 0.215657 2_2:+65543739 None:intergenic
GAAGAAGCAGAAGAAGAAAA+TGG 0.217860 2_2:+65543241 None:intergenic
GATCAACAATATTATAGTTT+TGG 0.220642 2_2:+65543401 None:intergenic
TGCTGCTGCTGCCATGTATT+TGG 0.240859 2_2:+65543361 None:intergenic
ATCAACTACATCACTAATTA+TGG 0.241664 2_2:-65544178 Msa0265300:CDS
CTCTGCAGTCCTGCAAGTTT+AGG 0.266738 2_2:+65544133 None:intergenic
GGTACTGTTTCAGGTAATAT+TGG 0.270500 2_2:+65543535 None:intergenic
TATAACACTGATCAACAATT+TGG 0.271473 2_2:+65543176 None:intergenic
TCCACTTGATGATCATTCTT+TGG 0.286980 2_2:+65543088 None:intergenic
ATTCTGAGCATGTAAGATAT+TGG 0.289210 2_2:+65543561 None:intergenic
TTCTGAGCATGTAAGATATT+GGG 0.293538 2_2:+65543562 None:intergenic
ATAATGAGGTGAAGAACTTT+TGG 0.303241 2_2:-65543840 Msa0265300:CDS
ACCTCATTATCTGTTCTTCC+TGG 0.311501 2_2:+65543853 None:intergenic
ACAGGATTGTCATTAAATAA+AGG 0.316668 2_2:+65543709 None:intergenic
ACTTGATGATGATCTTGTTT+TGG 0.326531 2_2:+65543121 None:intergenic
AAACTTCCACGTTTCAAATC+AGG 0.335974 2_2:+65544067 None:intergenic
GATATTGATGATTGGAGTTA+AGG 0.345476 2_2:+65543686 None:intergenic
TCTGCAGTCCTGCAAGTTTA+GGG 0.358458 2_2:+65544134 None:intergenic
CTTTGAAAGTGAAACCAATA+AGG 0.387677 2_2:-65543284 Msa0265300:CDS
TATGAAGATGGGATATTTGA+TGG 0.396505 2_2:+65543511 None:intergenic
GATATTCACTGTCCTAGAAA+TGG 0.403860 2_2:-65543751 Msa0265300:CDS
AGCTCTGTCCCTAAACTTGC+AGG 0.405767 2_2:-65544142 Msa0265300:CDS
CTAATTATGGACATGGTTGT+TGG 0.406869 2_2:-65544165 Msa0265300:CDS
GATTGGAGTTGGGATATTGA+TGG 0.413697 2_2:+65543639 None:intergenic
TTCATACCATTCTAGGCAAC+AGG 0.415338 2_2:-65544012 Msa0265300:intron
CAGGATTGTCATTAAATAAA+GGG 0.422155 2_2:+65543710 None:intergenic
AAGAAGCAGAAGAAGAAAAT+GGG 0.436899 2_2:+65543242 None:intergenic
TGATCAATACCTTGTAGGAT+TGG 0.441130 2_2:+65543622 None:intergenic
GGATATTGATGGGAAGGTAT+AGG 0.442246 2_2:+65543650 None:intergenic
ATTATACCTGTTGCCTAGAA+TGG 0.463512 2_2:+65544006 None:intergenic
AGAAAATGTGGCTAAAGAAG+TGG 0.482058 2_2:+65543774 None:intergenic
GTCAAAGTGATATTGATGAT+TGG 0.483558 2_2:+65543678 None:intergenic
ATTGGAGTTGGGATATTGAT+GGG 0.491224 2_2:+65543640 None:intergenic
GTATCTAATTCATATGAAGA+TGG 0.496899 2_2:+65543499 None:intergenic
TGATGATTGGAGTTAAGGAC+AGG 0.498212 2_2:+65543691 None:intergenic
TACCTTGTAGGATTGGAGTT+GGG 0.502222 2_2:+65543629 None:intergenic
ATACCTTGTAGGATTGGAGT+TGG 0.505314 2_2:+65543628 None:intergenic
AGAAGGTGAAAAGAGGACTA+TGG 0.507962 2_2:-65544225 Msa0265300:CDS
ACTTCCAATTAAGGAAGGAT+AGG 0.508216 2_2:+65542965 None:intergenic
GAGTTGGGATATTGATGGGA+AGG 0.522153 2_2:+65543644 None:intergenic
TATCTAATTCATATGAAGAT+GGG 0.537032 2_2:+65543500 None:intergenic
CAATTTGGTTGACAACATCA+TGG 0.540440 2_2:+65543191 None:intergenic
CAGATAGCAAAGCATTTACC+AGG 0.550164 2_2:-65543871 Msa0265300:CDS
TTATCAATATTCCAAATACA+TGG 0.550604 2_2:-65543372 Msa0265300:CDS
ATAATGAGAGCAGCTTCTTG+TGG 0.553720 2_2:+65544040 None:intergenic
TATAATACAGATCATTATCA+AGG 0.561853 2_2:-65543157 Msa0265300:CDS
CTTCATATGAATTAGATACA+TGG 0.562114 2_2:-65543495 Msa0265300:CDS
GAAGATGTTGTTGTAGAGGA+TGG 0.571067 2_2:+65543031 None:intergenic
GAAAATGTGGCTAAAGAAGT+GGG 0.573728 2_2:+65543775 None:intergenic
ACTGGTTGATAGAATGATAG+TGG 0.574540 2_2:+65543001 None:intergenic
TATTGATGGGAAGGTATAGG+TGG 0.579830 2_2:+65543653 None:intergenic
ATCCCAACTCCAATCCTACA+AGG 0.580405 2_2:-65543631 Msa0265300:CDS
AATAAACAGAAGGTGAAAAG+AGG 0.582306 2_2:-65544232 Msa0265300:CDS
ACAGTGAATATCAGAAAATG+TGG 0.592062 2_2:+65543762 None:intergenic
ACCAGGAAGAACAGATAATG+AGG 0.592167 2_2:-65543854 Msa0265300:CDS
TGAAGAAGATGTTGTTGTAG+AGG 0.594242 2_2:+65543027 None:intergenic
CTTGCAGGACTGCAGAGATG+TGG 0.599628 2_2:-65544127 Msa0265300:CDS
CTCTTGCTGCAATAAACAGA+AGG 0.601662 2_2:-65544242 Msa0265300:CDS
TCATGACTTCCAATTAAGGA+AGG 0.613392 2_2:+65542960 None:intergenic
TACATCACTAATTATGGACA+TGG 0.629536 2_2:-65544172 Msa0265300:CDS
TTAAGACCTGATTTGAAACG+TGG 0.631002 2_2:-65544073 Msa0265300:CDS
ACCAAAGAATGATCATCAAG+TGG 0.657833 2_2:-65543089 Msa0265300:CDS
GAAGATGGGATATTTGATGG+TGG 0.705441 2_2:+65543514 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAACAATATTATAGTTTT+GGG + chr2_2:65543827-65543846 None:intergenic 15.0%
!!! ATCAACAATATTATAGTTTT+GGG + chr2_2:65543827-65543846 None:intergenic 15.0%
!! TGTTAATTAGTAAAACCTTA+TGG + chr2_2:65543302-65543321 None:intergenic 20.0%
!! TACTAATTAACAAGAAAGTA+TGG - chr2_2:65543310-65543329 Msa0265300:CDS 20.0%
!! TATCTAATTCATATGAAGAT+GGG + chr2_2:65543729-65543748 None:intergenic 20.0%
!!! TGATGATTTTGTTGAATATT+TGG + chr2_2:65543778-65543797 None:intergenic 20.0%
!!! GATCAACAATATTATAGTTT+TGG + chr2_2:65543828-65543847 None:intergenic 20.0%
!! TTATCAATATTCCAAATACA+TGG - chr2_2:65543854-65543873 Msa0265300:CDS 20.0%
!! ACAAACATAATTATCCTTAT+TGG + chr2_2:65543959-65543978 None:intergenic 20.0%
!! TATAATACAGATCATTATCA+AGG - chr2_2:65544069-65544088 Msa0265300:CDS 20.0%
!! TGTTAATTAGTAAAACCTTA+TGG + chr2_2:65543302-65543321 None:intergenic 20.0%
!! TACTAATTAACAAGAAAGTA+TGG - chr2_2:65543310-65543329 Msa0265300:CDS 20.0%
!! TATCTAATTCATATGAAGAT+GGG + chr2_2:65543729-65543748 None:intergenic 20.0%
!!! TGATGATTTTGTTGAATATT+TGG + chr2_2:65543778-65543797 None:intergenic 20.0%
!!! GATCAACAATATTATAGTTT+TGG + chr2_2:65543828-65543847 None:intergenic 20.0%
!! TTATCAATATTCCAAATACA+TGG - chr2_2:65543854-65543873 Msa0265300:CDS 20.0%
!! ACAAACATAATTATCCTTAT+TGG + chr2_2:65543959-65543978 None:intergenic 20.0%
!! TATAATACAGATCATTATCA+AGG - chr2_2:65544069-65544088 Msa0265300:CDS 20.0%
! ATCAACTACATCACTAATTA+TGG - chr2_2:65543048-65543067 Msa0265300:CDS 25.0%
! TTTGATATCAATCAACCATA+AGG - chr2_2:65543284-65543303 Msa0265300:CDS 25.0%
!! ATTAACAAGAAAGTATGGTT+TGG - chr2_2:65543315-65543334 Msa0265300:CDS 25.0%
! CAGGATTGTCATTAAATAAA+GGG + chr2_2:65543519-65543538 None:intergenic 25.0%
! ACAGGATTGTCATTAAATAA+AGG + chr2_2:65543520-65543539 None:intergenic 25.0%
! GTATCTAATTCATATGAAGA+TGG + chr2_2:65543730-65543749 None:intergenic 25.0%
! CTTCATATGAATTAGATACA+TGG - chr2_2:65543731-65543750 Msa0265300:CDS 25.0%
!!! AACAATATTATAGTTTTGGG+AGG + chr2_2:65543824-65543843 None:intergenic 25.0%
! TATAACACTGATCAACAATT+TGG + chr2_2:65544053-65544072 None:intergenic 25.0%
! ATCAACTACATCACTAATTA+TGG - chr2_2:65543048-65543067 Msa0265300:CDS 25.0%
! TTTGATATCAATCAACCATA+AGG - chr2_2:65543284-65543303 Msa0265300:CDS 25.0%
!! ATTAACAAGAAAGTATGGTT+TGG - chr2_2:65543315-65543334 Msa0265300:CDS 25.0%
! CAGGATTGTCATTAAATAAA+GGG + chr2_2:65543519-65543538 None:intergenic 25.0%
! ACAGGATTGTCATTAAATAA+AGG + chr2_2:65543520-65543539 None:intergenic 25.0%
! GTATCTAATTCATATGAAGA+TGG + chr2_2:65543730-65543749 None:intergenic 25.0%
! CTTCATATGAATTAGATACA+TGG - chr2_2:65543731-65543750 Msa0265300:CDS 25.0%
!!! AACAATATTATAGTTTTGGG+AGG + chr2_2:65543824-65543843 None:intergenic 25.0%
! TATAACACTGATCAACAATT+TGG + chr2_2:65544053-65544072 None:intergenic 25.0%
AATAAACAGAAGGTGAAAAG+AGG - chr2_2:65542994-65543013 Msa0265300:CDS 30.0%
! ATGAGTTTTTCATCTTCTTC+TGG + chr2_2:65543030-65543049 None:intergenic 30.0%
TACATCACTAATTATGGACA+TGG - chr2_2:65543054-65543073 Msa0265300:CDS 30.0%
ATTGAACTTCATACCATTCT+AGG - chr2_2:65543207-65543226 Msa0265300:CDS 30.0%
! AAGAAAGTATGGTTTGGATT+TGG - chr2_2:65543321-65543340 Msa0265300:CDS 30.0%
! ATAATGAGGTGAAGAACTTT+TGG - chr2_2:65543386-65543405 Msa0265300:CDS 30.0%
ACAGTGAATATCAGAAAATG+TGG + chr2_2:65543467-65543486 None:intergenic 30.0%
! GATATTGATGATTGGAGTTA+AGG + chr2_2:65543543-65543562 None:intergenic 30.0%
! GTCAAAGTGATATTGATGAT+TGG + chr2_2:65543551-65543570 None:intergenic 30.0%
!! CATTTTGATCAATACCTTGT+AGG + chr2_2:65543612-65543631 None:intergenic 30.0%
TTCTGAGCATGTAAGATATT+GGG + chr2_2:65543667-65543686 None:intergenic 30.0%
ATTCTGAGCATGTAAGATAT+TGG + chr2_2:65543668-65543687 None:intergenic 30.0%
TATGAAGATGGGATATTTGA+TGG + chr2_2:65543718-65543737 None:intergenic 30.0%
! TCAAAGACTTTTTGCACAAT+AGG + chr2_2:65543928-65543947 None:intergenic 30.0%
! CTTTGAAAGTGAAACCAATA+AGG - chr2_2:65543942-65543961 Msa0265300:intron 30.0%
AAGAAGCAGAAGAAGAAAAT+GGG + chr2_2:65543987-65544006 None:intergenic 30.0%
!!! ACTTGATGATGATCTTGTTT+TGG + chr2_2:65544108-65544127 None:intergenic 30.0%
AATAAACAGAAGGTGAAAAG+AGG - chr2_2:65542994-65543013 Msa0265300:CDS 30.0%
! ATGAGTTTTTCATCTTCTTC+TGG + chr2_2:65543030-65543049 None:intergenic 30.0%
TACATCACTAATTATGGACA+TGG - chr2_2:65543054-65543073 Msa0265300:CDS 30.0%
ATTGAACTTCATACCATTCT+AGG - chr2_2:65543207-65543226 Msa0265300:CDS 30.0%
! AAGAAAGTATGGTTTGGATT+TGG - chr2_2:65543321-65543340 Msa0265300:CDS 30.0%
! ATAATGAGGTGAAGAACTTT+TGG - chr2_2:65543386-65543405 Msa0265300:CDS 30.0%
ACAGTGAATATCAGAAAATG+TGG + chr2_2:65543467-65543486 None:intergenic 30.0%
! GATATTGATGATTGGAGTTA+AGG + chr2_2:65543543-65543562 None:intergenic 30.0%
! GTCAAAGTGATATTGATGAT+TGG + chr2_2:65543551-65543570 None:intergenic 30.0%
!! CATTTTGATCAATACCTTGT+AGG + chr2_2:65543612-65543631 None:intergenic 30.0%
TTCTGAGCATGTAAGATATT+GGG + chr2_2:65543667-65543686 None:intergenic 30.0%
ATTCTGAGCATGTAAGATAT+TGG + chr2_2:65543668-65543687 None:intergenic 30.0%
TATGAAGATGGGATATTTGA+TGG + chr2_2:65543718-65543737 None:intergenic 30.0%
! TCAAAGACTTTTTGCACAAT+AGG + chr2_2:65543928-65543947 None:intergenic 30.0%
! CTTTGAAAGTGAAACCAATA+AGG - chr2_2:65543942-65543961 Msa0265300:intron 30.0%
AAGAAGCAGAAGAAGAAAAT+GGG + chr2_2:65543987-65544006 None:intergenic 30.0%
!!! ACTTGATGATGATCTTGTTT+TGG + chr2_2:65544108-65544127 None:intergenic 30.0%
CTAATTATGGACATGGTTGT+TGG - chr2_2:65543061-65543080 Msa0265300:CDS 35.0%
! TTAAGACCTGATTTGAAACG+TGG - chr2_2:65543153-65543172 Msa0265300:CDS 35.0%
AAACTTCCACGTTTCAAATC+AGG + chr2_2:65543162-65543181 None:intergenic 35.0%
ATTATACCTGTTGCCTAGAA+TGG + chr2_2:65543223-65543242 None:intergenic 35.0%
GAAAATGTGGCTAAAGAAGT+GGG + chr2_2:65543454-65543473 None:intergenic 35.0%
AGAAAATGTGGCTAAAGAAG+TGG + chr2_2:65543455-65543474 None:intergenic 35.0%
GATATTCACTGTCCTAGAAA+TGG - chr2_2:65543475-65543494 Msa0265300:CDS 35.0%
CTTTCAACAGAACCATTTCT+AGG + chr2_2:65543490-65543509 None:intergenic 35.0%
ATTGGAGTTGGGATATTGAT+GGG + chr2_2:65543589-65543608 None:intergenic 35.0%
TGATCAATACCTTGTAGGAT+TGG + chr2_2:65543607-65543626 None:intergenic 35.0%
! GGTACTGTTTCAGGTAATAT+TGG + chr2_2:65543694-65543713 None:intergenic 35.0%
GAAGAAGCAGAAGAAGAAAA+TGG + chr2_2:65543988-65544007 None:intergenic 35.0%
CAATTTGGTTGACAACATCA+TGG + chr2_2:65544038-65544057 None:intergenic 35.0%
ACCAAAGAATGATCATCAAG+TGG - chr2_2:65544137-65544156 Msa0265300:CDS 35.0%
! TCCACTTGATGATCATTCTT+TGG + chr2_2:65544141-65544160 None:intergenic 35.0%
TGAAGAAGATGTTGTTGTAG+AGG + chr2_2:65544202-65544221 None:intergenic 35.0%
!! ACTGGTTGATAGAATGATAG+TGG + chr2_2:65544228-65544247 None:intergenic 35.0%
CTAATTATGGACATGGTTGT+TGG - chr2_2:65543061-65543080 Msa0265300:CDS 35.0%
! TTAAGACCTGATTTGAAACG+TGG - chr2_2:65543153-65543172 Msa0265300:CDS 35.0%
AAACTTCCACGTTTCAAATC+AGG + chr2_2:65543162-65543181 None:intergenic 35.0%
ATTATACCTGTTGCCTAGAA+TGG + chr2_2:65543223-65543242 None:intergenic 35.0%
GAAAATGTGGCTAAAGAAGT+GGG + chr2_2:65543454-65543473 None:intergenic 35.0%
AGAAAATGTGGCTAAAGAAG+TGG + chr2_2:65543455-65543474 None:intergenic 35.0%
GATATTCACTGTCCTAGAAA+TGG - chr2_2:65543475-65543494 Msa0265300:CDS 35.0%
CTTTCAACAGAACCATTTCT+AGG + chr2_2:65543490-65543509 None:intergenic 35.0%
ATTGGAGTTGGGATATTGAT+GGG + chr2_2:65543589-65543608 None:intergenic 35.0%
TGATCAATACCTTGTAGGAT+TGG + chr2_2:65543607-65543626 None:intergenic 35.0%
! GGTACTGTTTCAGGTAATAT+TGG + chr2_2:65543694-65543713 None:intergenic 35.0%
GAAGAAGCAGAAGAAGAAAA+TGG + chr2_2:65543988-65544007 None:intergenic 35.0%
CAATTTGGTTGACAACATCA+TGG + chr2_2:65544038-65544057 None:intergenic 35.0%
ACCAAAGAATGATCATCAAG+TGG - chr2_2:65544137-65544156 Msa0265300:CDS 35.0%
! TCCACTTGATGATCATTCTT+TGG + chr2_2:65544141-65544160 None:intergenic 35.0%
TGAAGAAGATGTTGTTGTAG+AGG + chr2_2:65544202-65544221 None:intergenic 35.0%
!! ACTGGTTGATAGAATGATAG+TGG + chr2_2:65544228-65544247 None:intergenic 35.0%
CTCTTGCTGCAATAAACAGA+AGG - chr2_2:65542984-65543003 Msa0265300:CDS 40.0%
AGAAGGTGAAAAGAGGACTA+TGG - chr2_2:65543001-65543020 Msa0265300:CDS 40.0%
AGAGATGTGGAAAAAGTTGC+AGG - chr2_2:65543112-65543131 Msa0265300:CDS 40.0%
! GAAAAAGTTGCAGGTTGAGA+TGG - chr2_2:65543121-65543140 Msa0265300:CDS 40.0%
ATAATGAGAGCAGCTTCTTG+TGG + chr2_2:65543189-65543208 None:intergenic 40.0%
TTCATACCATTCTAGGCAAC+AGG - chr2_2:65543214-65543233 Msa0265300:CDS 40.0%
! AGTATGGTTTGGATTTGGAC+AGG - chr2_2:65543326-65543345 Msa0265300:CDS 40.0%
! CAGATAGCAAAGCATTTACC+AGG - chr2_2:65543355-65543374 Msa0265300:CDS 40.0%
ACCAGGAAGAACAGATAATG+AGG - chr2_2:65543372-65543391 Msa0265300:CDS 40.0%
ACCTCATTATCTGTTCTTCC+TGG + chr2_2:65543376-65543395 None:intergenic 40.0%
TGATGATTGGAGTTAAGGAC+AGG + chr2_2:65543538-65543557 None:intergenic 40.0%
! TATTGATGGGAAGGTATAGG+TGG + chr2_2:65543576-65543595 None:intergenic 40.0%
! GGATATTGATGGGAAGGTAT+AGG + chr2_2:65543579-65543598 None:intergenic 40.0%
GATTGGAGTTGGGATATTGA+TGG + chr2_2:65543590-65543609 None:intergenic 40.0%
TACCTTGTAGGATTGGAGTT+GGG + chr2_2:65543600-65543619 None:intergenic 40.0%
ATACCTTGTAGGATTGGAGT+TGG + chr2_2:65543601-65543620 None:intergenic 40.0%
!! TTTGATGGTGGTACTGTTTC+AGG + chr2_2:65543703-65543722 None:intergenic 40.0%
GAAGATGGGATATTTGATGG+TGG + chr2_2:65543715-65543734 None:intergenic 40.0%
GAAGATGTTGTTGTAGAGGA+TGG + chr2_2:65544198-65544217 None:intergenic 40.0%
!! ATAGGTTTTGTGAGAGTGAC+TGG + chr2_2:65544246-65544265 None:intergenic 40.0%
CTCTTGCTGCAATAAACAGA+AGG - chr2_2:65542984-65543003 Msa0265300:CDS 40.0%
AGAAGGTGAAAAGAGGACTA+TGG - chr2_2:65543001-65543020 Msa0265300:CDS 40.0%
AGAGATGTGGAAAAAGTTGC+AGG - chr2_2:65543112-65543131 Msa0265300:CDS 40.0%
! GAAAAAGTTGCAGGTTGAGA+TGG - chr2_2:65543121-65543140 Msa0265300:CDS 40.0%
ATAATGAGAGCAGCTTCTTG+TGG + chr2_2:65543189-65543208 None:intergenic 40.0%
TTCATACCATTCTAGGCAAC+AGG - chr2_2:65543214-65543233 Msa0265300:CDS 40.0%
! AGTATGGTTTGGATTTGGAC+AGG - chr2_2:65543326-65543345 Msa0265300:CDS 40.0%
! CAGATAGCAAAGCATTTACC+AGG - chr2_2:65543355-65543374 Msa0265300:CDS 40.0%
ACCAGGAAGAACAGATAATG+AGG - chr2_2:65543372-65543391 Msa0265300:CDS 40.0%
ACCTCATTATCTGTTCTTCC+TGG + chr2_2:65543376-65543395 None:intergenic 40.0%
TGATGATTGGAGTTAAGGAC+AGG + chr2_2:65543538-65543557 None:intergenic 40.0%
! TATTGATGGGAAGGTATAGG+TGG + chr2_2:65543576-65543595 None:intergenic 40.0%
! GGATATTGATGGGAAGGTAT+AGG + chr2_2:65543579-65543598 None:intergenic 40.0%
GATTGGAGTTGGGATATTGA+TGG + chr2_2:65543590-65543609 None:intergenic 40.0%
TACCTTGTAGGATTGGAGTT+GGG + chr2_2:65543600-65543619 None:intergenic 40.0%
ATACCTTGTAGGATTGGAGT+TGG + chr2_2:65543601-65543620 None:intergenic 40.0%
!! TTTGATGGTGGTACTGTTTC+AGG + chr2_2:65543703-65543722 None:intergenic 40.0%
GAAGATGGGATATTTGATGG+TGG + chr2_2:65543715-65543734 None:intergenic 40.0%
GAAGATGTTGTTGTAGAGGA+TGG + chr2_2:65544198-65544217 None:intergenic 40.0%
!! ATAGGTTTTGTGAGAGTGAC+TGG + chr2_2:65544246-65544265 None:intergenic 40.0%
TCTGCAGTCCTGCAAGTTTA+GGG + chr2_2:65543095-65543114 None:intergenic 45.0%
! ATGGTTTGGATTTGGACAGG+TGG - chr2_2:65543329-65543348 Msa0265300:CDS 45.0%
! TGGTTTGGATTTGGACAGGT+GGG - chr2_2:65543330-65543349 Msa0265300:CDS 45.0%
GAGTTGGGATATTGATGGGA+AGG + chr2_2:65543585-65543604 None:intergenic 45.0%
ATCCCAACTCCAATCCTACA+AGG - chr2_2:65543595-65543614 Msa0265300:CDS 45.0%
TCTGCAGTCCTGCAAGTTTA+GGG + chr2_2:65543095-65543114 None:intergenic 45.0%
! ATGGTTTGGATTTGGACAGG+TGG - chr2_2:65543329-65543348 Msa0265300:CDS 45.0%
! TGGTTTGGATTTGGACAGGT+GGG - chr2_2:65543330-65543349 Msa0265300:CDS 45.0%
GAGTTGGGATATTGATGGGA+AGG + chr2_2:65543585-65543604 None:intergenic 45.0%
ATCCCAACTCCAATCCTACA+AGG - chr2_2:65543595-65543614 Msa0265300:CDS 45.0%
AGCTCTGTCCCTAAACTTGC+AGG - chr2_2:65543084-65543103 Msa0265300:CDS 50.0%
CTCTGCAGTCCTGCAAGTTT+AGG + chr2_2:65543096-65543115 None:intergenic 50.0%
!!! GGAGGCAGCATCACTTTTTG+TGG + chr2_2:65543806-65543825 None:intergenic 50.0%
TGCTGCTGCTGCCATGTATT+TGG + chr2_2:65543868-65543887 None:intergenic 50.0%
AGCTCTGTCCCTAAACTTGC+AGG - chr2_2:65543084-65543103 Msa0265300:CDS 50.0%
CTCTGCAGTCCTGCAAGTTT+AGG + chr2_2:65543096-65543115 None:intergenic 50.0%
!!! GGAGGCAGCATCACTTTTTG+TGG + chr2_2:65543806-65543825 None:intergenic 50.0%
TGCTGCTGCTGCCATGTATT+TGG + chr2_2:65543868-65543887 None:intergenic 50.0%
CTTGCAGGACTGCAGAGATG+TGG - chr2_2:65543099-65543118 Msa0265300:CDS 55.0%
CTTGCAGGACTGCAGAGATG+TGG - chr2_2:65543099-65543118 Msa0265300:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 65542973 65544275 65542973 ID=Msa0265300;Name=Msa0265300
chr2_2 mRNA 65542973 65544275 65542973 ID=Msa0265300-mRNA-1;Parent=Msa0265300;Name=Msa0265300-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|2|0|396
chr2_2 exon 65544013 65544275 65544013 ID=Msa0265300-mRNA-1:exon:20627;Parent=Msa0265300-mRNA-1
chr2_2 exon 65542973 65543900 65542973 ID=Msa0265300-mRNA-1:exon:20626;Parent=Msa0265300-mRNA-1
chr2_2 CDS 65544013 65544275 65544013 ID=Msa0265300-mRNA-1:cds;Parent=Msa0265300-mRNA-1
chr2_2 CDS 65542973 65543900 65542973 ID=Msa0265300-mRNA-1:cds;Parent=Msa0265300-mRNA-1
Gene Sequence

>Msa0265300

ATGGGGCATCACTCTTGCTGCAATAAACAGAAGGTGAAAAGAGGACTATGGTCACCAGAAGAAGATGAAAAACTCATCAACTACATCACTAATTATGGACATGGTTGTTGGAGCTCTGTCCCTAAACTTGCAGGACTGCAGAGATGTGGAAAAAGTTGCAGGTTGAGATGGATAAATTATTTAAGACCTGATTTGAAACGTGGAAGTTTTTCTCCACAAGAAGCTGCTCTCATTATTGAACTTCATACCATTCTAGGCAACAGGTGGGCTCAGATAGCAAAGCATTTACCAGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAACTACTTTCACATGATTTTGTTCCCACTTCTTTAGCCACATTTTCTGATATTCACTGTCCTAGAAATGGTTCTGTTGAAAGTTTCTTCCCTTTATTTAATGACAATCCTGTCCTTAACTCCAATCATCAATATCACTTTGACAACCACCTATACCTTCCCATCAATATCCCAACTCCAATCCTACAAGGTATTGATCAAAATGATATCAAAAATATTGATATCAACAGTTATAATCCCAATATCTTACATGCTCAGAATAATCCAATATTACCTGAAACAGTACCACCATCAAATATCCCATCTTCATATGAATTAGATACATGGTCATTAATTCATCATCTCAATCCAAATATTCAACAAAATCATCAAATGACCACAAAAAGTGATGCTGCCTCCCAAAACTATAATATTGTTGATCAGAGTTTTATCAATATTCCAAATACATGGCAGCAGCAGCACTATGATAGTAATAGTCATTTAGTGAATCAACTTGAACCTATTGTGCAAAAAGTCTTTGAAAGTGAAACCAATAAGGATAATTATGTTTGTAGCATCCCATTTTCTTCTTCTGCTTCTTCACAAGAACATGATCATCATCATCATCACCATGATGTTGTCAACCAAATTGTTGATCAGTGTTATAATACAGATCATTATCAAGGAACTATAATTTGTCCAAAACAAGATCATCATCAAGTTGTTGCTGCACCAAAGAATGATCATCAAGTGGAGTATAACATTGAAGCTCTCATCATGTCATCATTGCCATCCTCTACAACAACATCTTCTTCATCACCACTATCATTCTATCAACCAGTCACTCTCACAAAACCTATCCTTCCTTAA
Protein sequence

>Msa0265300

MGHHSCCNKQKVKRGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDFVPTSLATFSDIHCPRNGSVESFFPLFNDNPVLNSNHQYHFDNHLYLPINIPTPILQGIDQNDIKNIDINSYNPNILHAQNNPILPETVPPSNIPSSYELDTWSLIHHLNPNIQQNHQMTTKSDAASQNYNIVDQSFINIPNTWQQQHYDSNSHLVNQLEPIVQKVFESETNKDNYVCSIPFSSSASSQEHDHHHHHHDVVNQIVDQCYNTDHYQGTIICPKQDHHQVVAAPKNDHQVEYNIEALIMSSLPSSTTTSSSSPLSFYQPVTLTKPILP*