Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265880 | XP_013465509.1 | 84.064 | 251 | 6 | 3 | 1 | 217 | 1 | 251 | 3.13e-143 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265880 | sp|A8MQG7|ASK20_ARATH | 61.692 | 201 | 38 | 7 | 5 | 168 | 12 | 210 | 1.04e-71 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265880 | A0A072VBY1 | 84.064 | 251 | 6 | 3 | 1 | 217 | 1 | 251 | 1.50e-143 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0265880 | Msa1267740 | 0.961060 | 2.886772e-119 | -8.615850e-47 |
| Msa0265880 | Msa1445600 | 0.820310 | 7.337180e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265880 | MtrunA17_Chr2g0330971 | 84.064 | 251 | 6 | 3 | 1 | 217 | 1 | 251 | 2.88e-147 | 412 |
| Msa0265880 | MtrunA17_Chr2g0330981 | 67.194 | 253 | 47 | 5 | 1 | 217 | 1 | 253 | 8.02e-99 | 289 |
| Msa0265880 | MtrunA17_Chr8g0348821 | 58.868 | 265 | 53 | 9 | 5 | 216 | 12 | 273 | 4.30e-89 | 266 |
| Msa0265880 | MtrunA17_Chr7g0247861 | 60.591 | 203 | 40 | 6 | 5 | 169 | 12 | 212 | 3.37e-75 | 231 |
| Msa0265880 | MtrunA17_Chr6g0470511 | 55.869 | 213 | 51 | 7 | 2 | 176 | 11 | 218 | 2.48e-68 | 213 |
| Msa0265880 | MtrunA17_Chr8g0335691 | 52.885 | 208 | 57 | 5 | 1 | 168 | 1 | 207 | 9.38e-58 | 184 |
| Msa0265880 | MtrunA17_Chr8g0335731 | 53.514 | 185 | 51 | 4 | 1 | 151 | 1 | 184 | 5.81e-56 | 176 |
| Msa0265880 | MtrunA17_Chr8g0335711 | 45.455 | 209 | 69 | 5 | 1 | 168 | 1 | 205 | 1.53e-44 | 151 |
| Msa0265880 | MtrunA17_Chr7g0228441 | 46.890 | 209 | 59 | 7 | 1 | 168 | 1 | 198 | 5.30e-44 | 147 |
| Msa0265880 | MtrunA17_Chr8g0335761 | 44.498 | 209 | 70 | 6 | 1 | 168 | 1 | 204 | 2.04e-43 | 147 |
| Msa0265880 | MtrunA17_Chr3g0103481 | 53.509 | 114 | 27 | 1 | 54 | 141 | 1 | 114 | 6.49e-31 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265880 | AT2G45950.3 | 61.692 | 201 | 38 | 7 | 5 | 168 | 12 | 210 | 2.41e-73 | 226 |
| Msa0265880 | AT2G45950.1 | 61.692 | 201 | 38 | 7 | 5 | 168 | 12 | 210 | 2.41e-73 | 226 |
| Msa0265880 | AT2G45950.4 | 61.692 | 201 | 38 | 7 | 5 | 168 | 12 | 210 | 2.41e-73 | 226 |
| Msa0265880 | AT2G45950.5 | 61.692 | 201 | 38 | 7 | 5 | 168 | 12 | 210 | 1.06e-72 | 224 |
| Msa0265880 | AT2G45950.2 | 61.692 | 201 | 38 | 7 | 5 | 168 | 12 | 210 | 1.06e-72 | 224 |
| Msa0265880 | AT3G61415.2 | 60.784 | 204 | 40 | 8 | 5 | 170 | 12 | 213 | 1.02e-71 | 222 |
| Msa0265880 | AT3G61415.1 | 60.784 | 204 | 40 | 8 | 5 | 170 | 12 | 213 | 1.18e-71 | 222 |
Find 40 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTCTTCACATATAAA+TGG | 0.142985 | 2_2:+66228983 | None:intergenic |
| CAATATCTTGCTCCACTTGT+TGG | 0.288855 | 2_2:+66229017 | None:intergenic |
| CGCTCCTTGTTTGAGCGGCC+TGG | 0.301444 | 2_2:+66228857 | None:intergenic |
| TCTTACCGAGGAAGAGAAAT+TGG | 0.313674 | 2_2:-66228657 | Msa0265880:CDS |
| TCCTGTTCTCATGTCAGAAA+TGG | 0.338825 | 2_2:-66229086 | Msa0265880:exon |
| AAGACATACTGCACAATTCT+TGG | 0.359550 | 2_2:+66228943 | None:intergenic |
| AAGAAGAATGTGAAGGTAAA+TGG | 0.364244 | 2_2:-66228410 | Msa0265880:CDS |
| ATATGTGAAGAATTGCAAAA+AGG | 0.385772 | 2_2:-66228977 | Msa0265880:CDS |
| AATATCTTGCTCCACTTGTT+GGG | 0.388897 | 2_2:+66229018 | None:intergenic |
| CCTTCACATTCTTCTTATGT+TGG | 0.409567 | 2_2:+66228417 | None:intergenic |
| GCAATTCTTCACATATAAAT+GGG | 0.411971 | 2_2:+66228984 | None:intergenic |
| TCTTCCTCGGTAAGATCATC+AGG | 0.427229 | 2_2:+66228665 | None:intergenic |
| GAAGTTTGAAGCCACACATA+AGG | 0.441329 | 2_2:+66229052 | None:intergenic |
| TCCATTTCTGACATGAGAAC+AGG | 0.451037 | 2_2:+66229085 | None:intergenic |
| TCACTGATGACCCAAGCATT+AGG | 0.467031 | 2_2:-66228619 | Msa0265880:CDS |
| GTGTGGCTTCAAACTTCTGA+TGG | 0.483405 | 2_2:-66229046 | Msa0265880:CDS |
| GTTTATCTGTTTCCGCACTT+TGG | 0.495351 | 2_2:+66228369 | None:intergenic |
| GGGCTCCAATTTCTCTTCCT+CGG | 0.502445 | 2_2:+66228652 | None:intergenic |
| CACAAATATGCTCTGTGAGT+TGG | 0.512352 | 2_2:-66228801 | Msa0265880:CDS |
| GGTTCAAAAGCCTAATGCTT+GGG | 0.515510 | 2_2:+66228609 | None:intergenic |
| AATATGCTGCGTATTTCCTC+TGG | 0.531066 | 2_2:+66228695 | None:intergenic |
| TGTCGATTTCATCAAGCACC+AGG | 0.534958 | 2_2:-66228875 | Msa0265880:CDS |
| CGGTTCAAAAGCCTAATGCT+TGG | 0.541710 | 2_2:+66228608 | None:intergenic |
| TTCTCTTCTTGGCATACAAG+CGG | 0.552561 | 2_2:+66228588 | None:intergenic |
| AAAATCACCTTGTAAACTTG+AGG | 0.557760 | 2_2:+66228337 | None:intergenic |
| TGTGAGACCTCAAGTTTACA+AGG | 0.569835 | 2_2:-66228344 | None:intergenic |
| TTAAGAATTAAGCTCCACAT+TGG | 0.575341 | 2_2:+66228902 | None:intergenic |
| GTCATCAGTGATGTTTAACA+AGG | 0.579418 | 2_2:+66228631 | None:intergenic |
| CTCCATTAATAAAAGACAGA+AGG | 0.582081 | 2_2:+66228492 | None:intergenic |
| AGCACCAGGCCGCTCAAACA+AGG | 0.585987 | 2_2:-66228861 | Msa0265880:CDS |
| TGTAAACTTGAGGTCTCACA+AGG | 0.600049 | 2_2:+66228347 | None:intergenic |
| TGATGGTTCAACCCAACAAG+TGG | 0.601578 | 2_2:-66229029 | Msa0265880:CDS |
| AACAGGTCAGTTCTCCAATG+TGG | 0.631635 | 2_2:-66228916 | Msa0265880:intron |
| CCAACATAAGAAGAATGTGA+AGG | 0.658942 | 2_2:-66228417 | Msa0265880:CDS |
| ACTTTCGCTCCTTGTTTGAG+CGG | 0.668556 | 2_2:+66228852 | None:intergenic |
| GTAAATGGTCATGACGACAT+CGG | 0.684541 | 2_2:-66228395 | Msa0265880:CDS |
| TCATCAGTGATGTTTAACAA+GGG | 0.698660 | 2_2:+66228632 | None:intergenic |
| CGACATCGGACACCAAAGTG+CGG | 0.709958 | 2_2:-66228381 | Msa0265880:CDS |
| TGTGCCTGATGATCTTACCG+AGG | 0.742578 | 2_2:-66228669 | Msa0265880:CDS |
| AGATGACAAAGCCTTATGTG+TGG | 0.770261 | 2_2:-66229063 | Msa0265880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAGAACATAAAAAA+AGG | + | chr2_2:66228457-66228476 | None:intergenic | 10.0% |
| !! | ATCAAATAATACAAAAATTA+TGG | + | chr2_2:66229364-66229383 | None:intergenic | 10.0% |
| !! | TAAGAAAATGAAATATATTA+AGG | - | chr2_2:66232182-66232201 | Msa0265880:intron | 10.0% |
| !!! | AACAATGATTCTTTTTTTTA+GGG | - | chr2_2:66228594-66228613 | Msa0265880:CDS | 15.0% |
| !!! | TAATTTTCAATTGTTTTCAA+TGG | + | chr2_2:66228985-66229004 | None:intergenic | 15.0% |
| !! | AACATTTGTATTCAATATAT+TGG | - | chr2_2:66229822-66229841 | Msa0265880:intron | 15.0% |
| !! | AGTTAATATAAAGAAATGAA+TGG | + | chr2_2:66229917-66229936 | None:intergenic | 15.0% |
| !!! | TATGTTTCTATTTATAATGA+AGG | - | chr2_2:66229781-66229800 | Msa0265880:intron | 15.0% |
| !!! | AAAAACCTTTTTTTTAACAT+GGG | + | chr2_2:66230365-66230384 | None:intergenic | 15.0% |
| !!! | TAAAAACCTTTTTTTTAACA+TGG | + | chr2_2:66230366-66230385 | None:intergenic | 15.0% |
| !! | AAAAAATAGTAAAATCTCTT+TGG | - | chr2_2:66230426-66230445 | Msa0265880:intron | 15.0% |
| !! | TTCATAATTCAAATGAAATA+TGG | + | chr2_2:66230572-66230591 | None:intergenic | 15.0% |
| !! | TATATAATGAAAAATGTTGT+AGG | - | chr2_2:66230641-66230660 | Msa0265880:intron | 15.0% |
| !! | ATATAATGAAAAATGTTGTA+GGG | - | chr2_2:66230642-66230661 | Msa0265880:intron | 15.0% |
| !!! | AAATAATTTAAAATGAGTAC+TGG | - | chr2_2:66231720-66231739 | Msa0265880:intron | 15.0% |
| !! | ACAATTTAATACTTATTTCA+TGG | - | chr2_2:66231758-66231777 | Msa0265880:intron | 15.0% |
| !! | CAATTTAATACTTATTTCAT+GGG | - | chr2_2:66231759-66231778 | Msa0265880:intron | 15.0% |
| !!! | ATTTTTAGTATTATAGTTGT+GGG | - | chr2_2:66231973-66231992 | Msa0265880:intron | 15.0% |
| !!! | TCTAATATTTTTGTTCATTT+AGG | - | chr2_2:66232239-66232258 | Msa0265880:intron | 15.0% |
| !! | AATAAAAAAAAGAGGAAAAA+AGG | - | chr2_2:66232914-66232933 | Msa0265880:intron | 15.0% |
| !!! | TTTTATTCAAAGTGATACAA+AGG | - | chr2_2:66228481-66228500 | Msa0265880:CDS | 20.0% |
| !!! | CAACAATGATTCTTTTTTTT+AGG | - | chr2_2:66228593-66228612 | Msa0265880:CDS | 20.0% |
| !! | AAATGAAGATCCTAATATAA+GGG | + | chr2_2:66228665-66228684 | None:intergenic | 20.0% |
| !! | TAAATGAAGATCCTAATATA+AGG | + | chr2_2:66228666-66228685 | None:intergenic | 20.0% |
| !!! | TAAAAAGTTTTTATGTAGCT+TGG | - | chr2_2:66228735-66228754 | Msa0265880:intron | 20.0% |
| !! | TTATGAATGCTTATTTCAAA+GGG | + | chr2_2:66228781-66228800 | None:intergenic | 20.0% |
| !! | ATTATGAATGCTTATTTCAA+AGG | + | chr2_2:66228782-66228801 | None:intergenic | 20.0% |
| !! | CAAATAATAACAATCAAACA+TGG | + | chr2_2:66229127-66229146 | None:intergenic | 20.0% |
| !!! | AAAAGTTTTGAATGATTCTA+AGG | + | chr2_2:66229317-66229336 | None:intergenic | 20.0% |
| !!! | TTTTAAGTCTGTTTTTGTTA+GGG | - | chr2_2:66229338-66229357 | Msa0265880:intron | 20.0% |
| !!! | TTGTATTATTTGATCTCTTT+TGG | - | chr2_2:66229370-66229389 | Msa0265880:intron | 20.0% |
| !!! | ACAAGTTTATTTTTATACCA+TGG | - | chr2_2:66229621-66229640 | Msa0265880:intron | 20.0% |
| !! | CAAATACTATGATTCAAATA+CGG | - | chr2_2:66229938-66229957 | Msa0265880:intron | 20.0% |
| !! | AAATACTATGATTCAAATAC+GGG | - | chr2_2:66229939-66229958 | Msa0265880:intron | 20.0% |
| !!! | AGTAAACGTTATTATTTTCA+AGG | - | chr2_2:66230242-66230261 | Msa0265880:intron | 20.0% |
| !!! | TTACTATTTCTTTTAAACCT+TGG | + | chr2_2:66230390-66230409 | None:intergenic | 20.0% |
| !! | AGAAATTGTCGAAAAAAAAT+AGG | + | chr2_2:66230538-66230557 | None:intergenic | 20.0% |
| !! | ATAATTCAAATGAAATATGG+AGG | + | chr2_2:66230569-66230588 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCCATTTATAGTT+TGG | - | chr2_2:66230704-66230723 | Msa0265880:intron | 20.0% |
| !! | TAAGTATGAAATTCAGTTAT+GGG | + | chr2_2:66230730-66230749 | None:intergenic | 20.0% |
| !! | ATAAGTATGAAATTCAGTTA+TGG | + | chr2_2:66230731-66230750 | None:intergenic | 20.0% |
| !!! | TTTAGGGTTTTGTTAATTTA+TGG | - | chr2_2:66231046-66231065 | Msa0265880:intron | 20.0% |
| !!! | GTTTTCTTTAATTCTGAATT+TGG | - | chr2_2:66231068-66231087 | Msa0265880:intron | 20.0% |
| !!! | TAATTCTGAATTTGGATTTT+AGG | - | chr2_2:66231076-66231095 | Msa0265880:intron | 20.0% |
| !!! | AATTCTGAATTTGGATTTTA+GGG | - | chr2_2:66231077-66231096 | Msa0265880:intron | 20.0% |
| !!! | TTTGCTAAAGTTGATAATTT+TGG | - | chr2_2:66231281-66231300 | Msa0265880:intron | 20.0% |
| !! | TTGATTAAATATGCAAATGT+TGG | - | chr2_2:66231388-66231407 | Msa0265880:intron | 20.0% |
| !! | TGATTAAATATGCAAATGTT+GGG | - | chr2_2:66231389-66231408 | Msa0265880:intron | 20.0% |
| !!! | ATATATGCTCTATAATTTGT+TGG | + | chr2_2:66231786-66231805 | None:intergenic | 20.0% |
| !!! | CTTAATCATCAAGATTTTAT+AGG | - | chr2_2:66231937-66231956 | Msa0265880:intron | 20.0% |
| !!! | CATTTTTAGTATTATAGTTG+TGG | - | chr2_2:66231972-66231991 | Msa0265880:intron | 20.0% |
| !! | TGAAATATATTAAGGAGAAA+AGG | - | chr2_2:66232190-66232209 | Msa0265880:intron | 20.0% |
| !!! | CTTCTAAGAATAAAAAAAAG+AGG | - | chr2_2:66232906-66232925 | Msa0265880:intron | 20.0% |
| ! | CAGTAAAACTAAGTACTATT+AGG | - | chr2_2:66228504-66228523 | Msa0265880:intron | 25.0% |
| ! | AAAAAAAGGGTCAAACTATT+AGG | + | chr2_2:66228840-66228859 | None:intergenic | 25.0% |
| !!! | TTTATTTGCTGTCATTGAAA+TGG | + | chr2_2:66229084-66229103 | None:intergenic | 25.0% |
| ! | ATTTCAATGACAGCAAATAA+AGG | - | chr2_2:66229083-66229102 | Msa0265880:exon | 25.0% |
| ! | CTATTCAAATCTTGTAAGTT+GGG | + | chr2_2:66229176-66229195 | None:intergenic | 25.0% |
| ! | TCTATTCAAATCTTGTAAGT+TGG | + | chr2_2:66229177-66229196 | None:intergenic | 25.0% |
| !!! | GTTTTAAGTCTGTTTTTGTT+AGG | - | chr2_2:66229337-66229356 | Msa0265880:intron | 25.0% |
| !!! | AGTTTTATATTCCTCAAACA+TGG | - | chr2_2:66229990-66230009 | Msa0265880:intron | 25.0% |
| !! | GTTTTATATTCCTCAAACAT+GGG | - | chr2_2:66229991-66230010 | Msa0265880:intron | 25.0% |
| !! | TTTTATATTCCTCAAACATG+GGG | - | chr2_2:66229992-66230011 | Msa0265880:intron | 25.0% |
| !! | ACTACACTTGTTAAACAAAT+CGG | + | chr2_2:66230225-66230244 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTAACATGGGATT+TGG | + | chr2_2:66230359-66230378 | None:intergenic | 25.0% |
| ! | CAAATCCCATGTTAAAAAAA+AGG | - | chr2_2:66230357-66230376 | Msa0265880:intron | 25.0% |
| !!! | AAAAAAAAGGTTTTTAGCCA+AGG | - | chr2_2:66230370-66230389 | Msa0265880:intron | 25.0% |
| !! | AATTAAATGGGTTTGATATG+GGG | + | chr2_2:66230495-66230514 | None:intergenic | 25.0% |
| !! | GAATTAAATGGGTTTGATAT+GGG | + | chr2_2:66230496-66230515 | None:intergenic | 25.0% |
| !! | GTAATTGGATCTTGATTTTA+GGG | - | chr2_2:66231030-66231049 | Msa0265880:intron | 25.0% |
| ! | AGTTCAGAATTTGATGAATT+TGG | - | chr2_2:66231158-66231177 | Msa0265880:intron | 25.0% |
| !!! | TTTTAGTTTAATTCATGGCT+GGG | - | chr2_2:66231996-66232015 | Msa0265880:intron | 25.0% |
| !!! | TTTTTGCTGATTTGTAAGTT+AGG | - | chr2_2:66232080-66232099 | Msa0265880:intron | 25.0% |
| ! | TAAAAAAACTTGTCTTCCAT+GGG | + | chr2_2:66232141-66232160 | None:intergenic | 25.0% |
| ! | TTAAAAAAACTTGTCTTCCA+TGG | + | chr2_2:66232142-66232161 | None:intergenic | 25.0% |
| ! | GCAATTCTTCACATATAAAT+GGG | + | chr2_2:66232373-66232392 | None:intergenic | 25.0% |
| ! | TGCAATTCTTCACATATAAA+TGG | + | chr2_2:66232374-66232393 | None:intergenic | 25.0% |
| ! | ATATGTGAAGAATTGCAAAA+AGG | - | chr2_2:66232377-66232396 | Msa0265880:intron | 25.0% |
| ! | TAGCTCGAATAATTGAAAAA+AGG | - | chr2_2:66232633-66232652 | Msa0265880:intron | 25.0% |
| ! | TGCATATTGTCAAGACTTTT+TGG | - | chr2_2:66228559-66228578 | Msa0265880:CDS | 30.0% |
| GGATAGAGAATGATGAAATT+GGG | - | chr2_2:66228615-66228634 | Msa0265880:CDS | 30.0% | |
| CTCATTATCACCCTTATATT+AGG | - | chr2_2:66228652-66228671 | Msa0265880:CDS | 30.0% | |
| ACAACGATTCTGTAAGAATT+CGG | - | chr2_2:66228686-66228705 | Msa0265880:CDS | 30.0% | |
| ! | AAAAGCATACATACATAGAG+AGG | + | chr2_2:66228869-66228888 | None:intergenic | 30.0% |
| ! | GTGATAATATTTGCTAGCAT+AGG | - | chr2_2:66228920-66228939 | Msa0265880:intron | 30.0% |
| AATTTCTTTCTTTGCAGCTA+AGG | - | chr2_2:66229236-66229255 | Msa0265880:intron | 30.0% | |
| ATTTCTTTCTTTGCAGCTAA+GGG | - | chr2_2:66229237-66229256 | Msa0265880:intron | 30.0% | |
| !! | ATTCTAAGGTTGATAGTTAC+AGG | + | chr2_2:66229303-66229322 | None:intergenic | 30.0% |
| !!! | ATCTCTTTTGGAACTGTATT+TGG | - | chr2_2:66229382-66229401 | Msa0265880:intron | 30.0% |
| ! | TTTTGTTGATCAAGACAAAG+AGG | + | chr2_2:66229511-66229530 | None:intergenic | 30.0% |
| !! | TGATCAACGATTTTAACCAT+GGG | - | chr2_2:66229578-66229597 | Msa0265880:intron | 30.0% |
| TAAATGTTTGAAGAAACCCA+TGG | + | chr2_2:66229597-66229616 | None:intergenic | 30.0% | |
| TGTGTAAGAATGAAGTTGTA+TGG | - | chr2_2:66229652-66229671 | Msa0265880:intron | 30.0% | |
| CAAACACTATGATTCAAACA+CGG | - | chr2_2:66229688-66229707 | Msa0265880:intron | 30.0% | |
| AAACACTATGATTCAAACAC+GGG | - | chr2_2:66229689-66229708 | Msa0265880:intron | 30.0% | |
| ! | CGAATTAAATGGGTTTGATA+TGG | + | chr2_2:66230497-66230516 | None:intergenic | 30.0% |
| TAATGAAAAATGTTGTAGGG+TGG | - | chr2_2:66230645-66230664 | Msa0265880:intron | 30.0% | |
| AATGAGAGAAACAGAACAAA+GGG | + | chr2_2:66230760-66230779 | None:intergenic | 30.0% | |
| AAATGAGAGAAACAGAACAA+AGG | + | chr2_2:66230761-66230780 | None:intergenic | 30.0% | |
| ! | GGTAATTGGATCTTGATTTT+AGG | - | chr2_2:66231029-66231048 | Msa0265880:intron | 30.0% |
| !!! | GATTTTAGGGTTTTCTGAAT+TGG | - | chr2_2:66231090-66231109 | Msa0265880:intron | 30.0% |
| AATTGAAGGAAATTAAGGGA+AGG | + | chr2_2:66231485-66231504 | None:intergenic | 30.0% | |
| CCAGAATTGAAGGAAATTAA+GGG | + | chr2_2:66231489-66231508 | None:intergenic | 30.0% | |
| ACCAGAATTGAAGGAAATTA+AGG | + | chr2_2:66231490-66231509 | None:intergenic | 30.0% | |
| ATACTAAAAATGCCAACAGA+TGG | + | chr2_2:66231964-66231983 | None:intergenic | 30.0% | |
| !!! | GTGGGTTTTAGTTTAATTCA+TGG | - | chr2_2:66231991-66232010 | Msa0265880:intron | 30.0% |
| !!! | GTTTTAGTTTAATTCATGGC+TGG | - | chr2_2:66231995-66232014 | Msa0265880:intron | 30.0% |
| ! | TTTTCTATTATAAAGCCCCA+TGG | - | chr2_2:66232122-66232141 | Msa0265880:intron | 30.0% |
| AAAAAAACTTGTCTTCCATG+GGG | + | chr2_2:66232140-66232159 | None:intergenic | 30.0% | |
| ! | GACAAGACATTTTGCAAAAA+TGG | - | chr2_2:66232214-66232233 | Msa0265880:intron | 30.0% |
| TTAAGAATTAAGCTCCACAT+TGG | + | chr2_2:66232455-66232474 | None:intergenic | 30.0% | |
| TCATCAGTGATGTTTAACAA+GGG | + | chr2_2:66232725-66232744 | None:intergenic | 30.0% | |
| ! | AAGTAGTTCTTTTCTCTTCT+TGG | + | chr2_2:66232780-66232799 | None:intergenic | 30.0% |
| ! | GACCTTCTGTCTTTTATTAA+TGG | - | chr2_2:66232860-66232879 | Msa0265880:intron | 30.0% |
| CTCCATTAATAAAAGACAGA+AGG | + | chr2_2:66232865-66232884 | None:intergenic | 30.0% | |
| ! | TTTTATTAATGGAGATCCGA+AGG | - | chr2_2:66232871-66232890 | Msa0265880:intron | 30.0% |
| !!! | GAAGTAGTTTTAATCTCCTT+CGG | + | chr2_2:66232890-66232909 | None:intergenic | 30.0% |
| AAGAAGAATGTGAAGGTAAA+TGG | - | chr2_2:66232944-66232963 | Msa0265880:intron | 30.0% | |
| GGGATAGAGAATGATGAAAT+TGG | - | chr2_2:66228614-66228633 | Msa0265880:CDS | 35.0% | |
| ! | TAAGGGTGATAATGAGATTG+AGG | + | chr2_2:66228648-66228667 | None:intergenic | 35.0% |
| CATTCATAATTCAAGTCGCT+TGG | - | chr2_2:66228792-66228811 | Msa0265880:intron | 35.0% | |
| AGAGAGGTGGGAAAAAAAAA+GGG | + | chr2_2:66228853-66228872 | None:intergenic | 35.0% | |
| TAGAGAGGTGGGAAAAAAAA+AGG | + | chr2_2:66228854-66228873 | None:intergenic | 35.0% | |
| TCAATGGTGAAACTTAAGTG+AGG | + | chr2_2:66228969-66228988 | None:intergenic | 35.0% | |
| TCAATGACAGCAAATAAAGG+TGG | - | chr2_2:66229086-66229105 | Msa0265880:exon | 35.0% | |
| CAATGACAGCAAATAAAGGT+GGG | - | chr2_2:66229087-66229106 | Msa0265880:exon | 35.0% | |
| AAGGGTAAATGGAAAGCAAA+TGG | - | chr2_2:66229255-66229274 | Msa0265880:intron | 35.0% | |
| ! | AGTTGTTAACTTGAGAGCAT+TGG | - | chr2_2:66229414-66229433 | Msa0265880:intron | 35.0% |
| !! | GTGATCAACGATTTTAACCA+TGG | - | chr2_2:66229577-66229596 | Msa0265880:intron | 35.0% |
| TGCTATATTCCTCAAACATG+AGG | - | chr2_2:66229742-66229761 | Msa0265880:intron | 35.0% | |
| TACTTATAGCCTCATGTTTG+AGG | + | chr2_2:66229754-66229773 | None:intergenic | 35.0% | |
| TACTATGATTCAAATACGGG+AGG | - | chr2_2:66229942-66229961 | Msa0265880:intron | 35.0% | |
| AATAGTAGAGCTGGGTATAT+GGG | - | chr2_2:66230459-66230478 | Msa0265880:intron | 35.0% | |
| GTTATGGGCCAAACTATAAA+TGG | + | chr2_2:66230715-66230734 | None:intergenic | 35.0% | |
| GTAAGCATTAGAGAGGTAAT+TGG | - | chr2_2:66231015-66231034 | Msa0265880:intron | 35.0% | |
| ! | GGTTTTCTGAATTGGAATCT+TGG | - | chr2_2:66231098-66231117 | Msa0265880:intron | 35.0% |
| !! | TTGGACTTGTTAGATTTGTG+AGG | - | chr2_2:66231300-66231319 | Msa0265880:intron | 35.0% |
| !!! | GTGAGGAACATGTTGATTTT+TGG | - | chr2_2:66231317-66231336 | Msa0265880:intron | 35.0% |
| CCCTTAATTTCCTTCAATTC+TGG | - | chr2_2:66231486-66231505 | Msa0265880:intron | 35.0% | |
| ! | GATTTTATAGGTCCATCTGT+TGG | - | chr2_2:66231949-66231968 | Msa0265880:intron | 35.0% |
| AATATCTTGCTCCACTTGTT+GGG | + | chr2_2:66232339-66232358 | None:intergenic | 35.0% | |
| TGAAGAATTGCAAAAAGGCA+TGG | - | chr2_2:66232382-66232401 | Msa0265880:intron | 35.0% | |
| ! | GAAGAATTGCAAAAAGGCAT+GGG | - | chr2_2:66232383-66232402 | Msa0265880:intron | 35.0% |
| AAGACATACTGCACAATTCT+TGG | + | chr2_2:66232414-66232433 | None:intergenic | 35.0% | |
| GTCATCAGTGATGTTTAACA+AGG | + | chr2_2:66232726-66232745 | None:intergenic | 35.0% | |
| CCTTCACATTCTTCTTATGT+TGG | + | chr2_2:66232940-66232959 | None:intergenic | 35.0% | |
| CCAACATAAGAAGAATGTGA+AGG | - | chr2_2:66232937-66232956 | Msa0265880:intron | 35.0% | |
| CTGTCATTAACCAGTTCAAG+TGG | - | chr2_2:66228528-66228547 | Msa0265880:CDS | 40.0% | |
| CAGATCAAAACCACTTGAAC+TGG | + | chr2_2:66228541-66228560 | None:intergenic | 40.0% | |
| GACATAGCTAGATGACTGAT+GGG | - | chr2_2:66228708-66228727 | Msa0265880:intron | 40.0% | |
| GCATACATACATAGAGAGGT+GGG | + | chr2_2:66228865-66228884 | None:intergenic | 40.0% | |
| AGCATACATACATAGAGAGG+TGG | + | chr2_2:66228866-66228885 | None:intergenic | 40.0% | |
| TCTTTGCAGCTAAGGGTAAA+TGG | - | chr2_2:66229244-66229263 | Msa0265880:intron | 40.0% | |
| GGTAAATGGAAAGCAAATGG+TGG | - | chr2_2:66229258-66229277 | Msa0265880:intron | 40.0% | |
| AAATGGAAAGCAAATGGTGG+AGG | - | chr2_2:66229261-66229280 | Msa0265880:intron | 40.0% | |
| TCTTACACAAAGAGAGACCA+TGG | + | chr2_2:66229641-66229660 | None:intergenic | 40.0% | |
| ATTCAAACACGGGATGCTTT+AGG | - | chr2_2:66229699-66229718 | Msa0265880:intron | 40.0% | |
| TACTGATATCCCCATGTTTG+AGG | + | chr2_2:66230004-66230023 | None:intergenic | 40.0% | |
| TTTAGCCTGAATAGTAGAGC+TGG | - | chr2_2:66230450-66230469 | Msa0265880:intron | 40.0% | |
| TTAGCCTGAATAGTAGAGCT+GGG | - | chr2_2:66230451-66230470 | Msa0265880:intron | 40.0% | |
| TATACCCAGCTCTACTATTC+AGG | + | chr2_2:66230458-66230477 | None:intergenic | 40.0% | |
| GAATAGTAGAGCTGGGTATA+TGG | - | chr2_2:66230458-66230477 | Msa0265880:intron | 40.0% | |
| AAAAATAGGTCTTAAGCCCG+TGG | + | chr2_2:66230524-66230543 | None:intergenic | 40.0% | |
| TGAAAAATGTTGTAGGGTGG+TGG | - | chr2_2:66230648-66230667 | Msa0265880:intron | 40.0% | |
| TTCTTCGAAAGGAAGGATTG+TGG | + | chr2_2:66230980-66230999 | None:intergenic | 40.0% | |
| TCGATTCTTCTTCGAAAGGA+AGG | + | chr2_2:66230987-66231006 | None:intergenic | 40.0% | |
| CTGTTCGATTCTTCTTCGAA+AGG | + | chr2_2:66230991-66231010 | None:intergenic | 40.0% | |
| CACATCAGTACCAGAATTGA+AGG | + | chr2_2:66231499-66231518 | None:intergenic | 40.0% | |
| TCCTGTTCTCATGTCAGAAA+TGG | - | chr2_2:66232268-66232287 | Msa0265880:intron | 40.0% | |
| TCCATTTCTGACATGAGAAC+AGG | + | chr2_2:66232272-66232291 | None:intergenic | 40.0% | |
| ! | AGATGACAAAGCCTTATGTG+TGG | - | chr2_2:66232291-66232310 | Msa0265880:intron | 40.0% |
| ! | GAAGTTTGAAGCCACACATA+AGG | + | chr2_2:66232305-66232324 | None:intergenic | 40.0% |
| CAATATCTTGCTCCACTTGT+TGG | + | chr2_2:66232340-66232359 | None:intergenic | 40.0% | |
| CACAAATATGCTCTGTGAGT+TGG | - | chr2_2:66232553-66232572 | Msa0265880:intron | 40.0% | |
| TTGTGAGATCAATCAATGGC+CGG | + | chr2_2:66232604-66232623 | None:intergenic | 40.0% | |
| CGACTTGTGAGATCAATCAA+TGG | + | chr2_2:66232608-66232627 | None:intergenic | 40.0% | |
| AATTGAAAAAAGGTCGCCAG+AGG | - | chr2_2:66232643-66232662 | Msa0265880:intron | 40.0% | |
| AATATGCTGCGTATTTCCTC+TGG | + | chr2_2:66232662-66232681 | None:intergenic | 40.0% | |
| TCTTACCGAGGAAGAGAAAT+TGG | - | chr2_2:66232697-66232716 | Msa0265880:intron | 40.0% | |
| GGTTCAAAAGCCTAATGCTT+GGG | + | chr2_2:66232748-66232767 | None:intergenic | 40.0% | |
| TTCTCTTCTTGGCATACAAG+CGG | + | chr2_2:66232769-66232788 | None:intergenic | 40.0% | |
| GTAAATGGTCATGACGACAT+CGG | - | chr2_2:66232959-66232978 | Msa0265880:intron | 40.0% | |
| GTTTATCTGTTTCCGCACTT+TGG | + | chr2_2:66232988-66233007 | None:intergenic | 40.0% | |
| TGTAAACTTGAGGTCTCACA+AGG | + | chr2_2:66233010-66233029 | None:intergenic | 40.0% | |
| GGACATAGCTAGATGACTGA+TGG | - | chr2_2:66228707-66228726 | Msa0265880:intron | 45.0% | |
| ! | CCGTGGACTGCGAATTAAAT+GGG | + | chr2_2:66230507-66230526 | None:intergenic | 45.0% |
| CCCATTTAATTCGCAGTCCA+CGG | - | chr2_2:66230504-66230523 | Msa0265880:intron | 45.0% | |
| CCATTTAATTCGCAGTCCAC+GGG | - | chr2_2:66230505-66230524 | Msa0265880:intron | 45.0% | |
| ACTCTTCTCTCCTGCGATTT+CGG | - | chr2_2:66230900-66230919 | Msa0265880:intron | 45.0% | |
| TTCGAAAGGAAGGATTGTGG+TGG | + | chr2_2:66230977-66230996 | None:intergenic | 45.0% | |
| CGAAGAAGAATCGAACAGTG+TGG | - | chr2_2:66230993-66231012 | Msa0265880:intron | 45.0% | |
| CAGTGTGGTAAGCATTAGAG+AGG | - | chr2_2:66231008-66231027 | Msa0265880:intron | 45.0% | |
| TGATTAAGCACGCCAATCAG+TGG | + | chr2_2:66231925-66231944 | None:intergenic | 45.0% | |
| GCAACATGCTGCTAGTAACT+AGG | + | chr2_2:66232028-66232047 | None:intergenic | 45.0% | |
| GTGTGGCTTCAAACTTCTGA+TGG | - | chr2_2:66232308-66232327 | Msa0265880:intron | 45.0% | |
| TGATGGTTCAACCCAACAAG+TGG | - | chr2_2:66232325-66232344 | Msa0265880:intron | 45.0% | |
| TGCAGTATGTCTTCCTCAAC+AGG | - | chr2_2:66232421-66232440 | Msa0265880:intron | 45.0% | |
| ATTGGAGAACTGACCTGTTG+AGG | + | chr2_2:66232437-66232456 | None:intergenic | 45.0% | |
| AACAGGTCAGTTCTCCAATG+TGG | - | chr2_2:66232438-66232457 | Msa0265880:intron | 45.0% | |
| !! | TGTCGATTTCATCAAGCACC+AGG | - | chr2_2:66232479-66232498 | Msa0265880:intron | 45.0% |
| ! | ACTTTCGCTCCTTGTTTGAG+CGG | + | chr2_2:66232505-66232524 | None:intergenic | 45.0% |
| CTGCACACAGTCTACAATTC+CGG | - | chr2_2:66232582-66232601 | Msa0265880:intron | 45.0% | |
| TCTTCCTCGGTAAGATCATC+AGG | + | chr2_2:66232692-66232711 | None:intergenic | 45.0% | |
| TCACTGATGACCCAAGCATT+AGG | - | chr2_2:66232735-66232754 | Msa0265880:intron | 45.0% | |
| CGGTTCAAAAGCCTAATGCT+TGG | + | chr2_2:66232749-66232768 | None:intergenic | 45.0% | |
| ! | CCCGTGGACTGCGAATTAAA+TGG | + | chr2_2:66230508-66230527 | None:intergenic | 50.0% |
| AGGAGAGAGAGGAGATAGGA+CGG | + | chr2_2:66230866-66230885 | None:intergenic | 50.0% | |
| TCGCAGGAGAGAAGAGTTGA+GGG | + | chr2_2:66230897-66230916 | None:intergenic | 50.0% | |
| ATCGCAGGAGAGAAGAGTTG+AGG | + | chr2_2:66230898-66230917 | None:intergenic | 50.0% | |
| TGCAGACTGGAATCAAACGC+AGG | + | chr2_2:66230942-66230961 | None:intergenic | 50.0% | |
| ! | ATTTTCCACCACCCAGACCA+TGG | - | chr2_2:66231888-66231907 | Msa0265880:intron | 50.0% |
| TTAAGCACGCCAATCAGTGG+CGG | + | chr2_2:66231922-66231941 | None:intergenic | 50.0% | |
| TGTGCCTGATGATCTTACCG+AGG | - | chr2_2:66232685-66232704 | Msa0265880:intron | 50.0% | |
| GGGCTCCAATTTCTCTTCCT+CGG | + | chr2_2:66232705-66232724 | None:intergenic | 50.0% | |
| ATTTCCACCCGTGCAACGCA+CGG | + | chr2_2:66230318-66230337 | None:intergenic | 55.0% | |
| AGAGAGAGGAGATAGGACGG+TGG | + | chr2_2:66230863-66230882 | None:intergenic | 55.0% | |
| GAGCAGGAGAGAGAGGAGAT+AGG | + | chr2_2:66230870-66230889 | None:intergenic | 55.0% | |
| AAGAGTTGAGGGAGAGGAGC+AGG | + | chr2_2:66230886-66230905 | None:intergenic | 55.0% | |
| GGAGAGAAGAGTTGAGGGAG+AGG | + | chr2_2:66230892-66230911 | None:intergenic | 55.0% | |
| TGAAATCGCGCCGAAATCGC+AGG | + | chr2_2:66230913-66230932 | None:intergenic | 55.0% | |
| ATCCACAACCATGGTCTGGG+TGG | + | chr2_2:66231899-66231918 | None:intergenic | 55.0% | |
| CGGATCCACAACCATGGTCT+GGG | + | chr2_2:66231902-66231921 | None:intergenic | 55.0% | |
| GTTGTGGATCCGCCACTGAT+TGG | - | chr2_2:66231910-66231929 | Msa0265880:intron | 55.0% | |
| CGACATCGGACACCAAAGTG+CGG | - | chr2_2:66232973-66232992 | Msa0265880:intron | 55.0% | |
| TTGTTCGCCCGTGCGTTGCA+CGG | - | chr2_2:66230307-66230326 | Msa0265880:intron | 60.0% | |
| TTTCCACCCGTGCAACGCAC+GGG | + | chr2_2:66230317-66230336 | None:intergenic | 60.0% | |
| CCTCACCGCCGCTCAATTAC+CGG | - | chr2_2:66230808-66230827 | Msa0265880:intron | 60.0% | |
| AGCTGCCGCCGGTAATTGAG+CGG | + | chr2_2:66230819-66230838 | None:intergenic | 60.0% | |
| GGAGATAGGACGGTGGACGA+CGG | + | chr2_2:66230856-66230875 | None:intergenic | 60.0% | |
| GCGTCAGAGACTCTGCAGAC+TGG | + | chr2_2:66230955-66230974 | None:intergenic | 60.0% | |
| CACAACCATGGTCTGGGTGG+TGG | + | chr2_2:66231896-66231915 | None:intergenic | 60.0% | |
| CACCACCCAGACCATGGTTG+TGG | - | chr2_2:66231894-66231913 | Msa0265880:intron | 60.0% | |
| GCGGATCCACAACCATGGTC+TGG | + | chr2_2:66231903-66231922 | None:intergenic | 60.0% | |
| !! | CAGTGGCGGATCCACAACCA+TGG | + | chr2_2:66231908-66231927 | None:intergenic | 60.0% |
| AGCACCAGGCCGCTCAAACA+AGG | - | chr2_2:66232493-66232512 | Msa0265880:intron | 60.0% | |
| TGTTCGCCCGTGCGTTGCAC+GGG | - | chr2_2:66230308-66230327 | Msa0265880:intron | 65.0% | |
| CCGGTAATTGAGCGGCGGTG+AGG | + | chr2_2:66230811-66230830 | None:intergenic | 65.0% | |
| CACCGCCGCTCAATTACCGG+CGG | - | chr2_2:66230811-66230830 | Msa0265880:intron | 65.0% | |
| TGCCGCCGGTAATTGAGCGG+CGG | + | chr2_2:66230816-66230835 | None:intergenic | 65.0% | |
| GATAGGACGGTGGACGACGG+CGG | + | chr2_2:66230853-66230872 | None:intergenic | 65.0% | |
| GGGAGAGGAGCAGGAGAGAG+AGG | + | chr2_2:66230877-66230896 | None:intergenic | 65.0% | |
| ! | CGCTCCTTGTTTGAGCGGCC+TGG | + | chr2_2:66232500-66232519 | None:intergenic | 65.0% |
| TCGCCCGTGCGTTGCACGGG+TGG | - | chr2_2:66230311-66230330 | Msa0265880:intron | 75.0% | |
| TGGCGGCTGGTAGCTGCCGC+CGG | + | chr2_2:66230830-66230849 | None:intergenic | 75.0% | |
| ACGGTGGACGACGGCGGTGG+CGG | + | chr2_2:66230847-66230866 | None:intergenic | 75.0% | |
| AGGACGGTGGACGACGGCGG+TGG | + | chr2_2:66230850-66230869 | None:intergenic | 75.0% | |
| !! | TGGACGACGGCGGTGGCGGC+TGG | + | chr2_2:66230843-66230862 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 66228346 | 66233030 | 66228346 | ID=Msa0265880;Name=Msa0265880 |
| chr2_2 | mRNA | 66228346 | 66233030 | 66228346 | ID=Msa0265880-mRNA-1;Parent=Msa0265880;Name=Msa0265880-mRNA-1;_AED=0.29;_eAED=0.29;_QI=32|0|0|0.66|0|0|6|0|217 |
| chr2_2 | exon | 66233023 | 66233030 | 66233023 | ID=Msa0265880-mRNA-1:exon:20975;Parent=Msa0265880-mRNA-1 |
| chr2_2 | exon | 66230707 | 66230713 | 66230707 | ID=Msa0265880-mRNA-1:exon:20974;Parent=Msa0265880-mRNA-1 |
| chr2_2 | exon | 66228952 | 66229115 | 66228952 | ID=Msa0265880-mRNA-1:exon:20973;Parent=Msa0265880-mRNA-1 |
| chr2_2 | exon | 66228800 | 66228933 | 66228800 | ID=Msa0265880-mRNA-1:exon:20972;Parent=Msa0265880-mRNA-1 |
| chr2_2 | exon | 66228528 | 66228721 | 66228528 | ID=Msa0265880-mRNA-1:exon:20971;Parent=Msa0265880-mRNA-1 |
| chr2_2 | exon | 66228346 | 66228521 | 66228346 | ID=Msa0265880-mRNA-1:exon:20970;Parent=Msa0265880-mRNA-1 |
| chr2_2 | five_prime_UTR | 66233023 | 66233030 | 66233023 | ID=Msa0265880-mRNA-1:five_prime_utr;Parent=Msa0265880-mRNA-1 |
| chr2_2 | five_prime_UTR | 66230707 | 66230713 | 66230707 | ID=Msa0265880-mRNA-1:five_prime_utr;Parent=Msa0265880-mRNA-1 |
| chr2_2 | five_prime_UTR | 66229099 | 66229115 | 66229099 | ID=Msa0265880-mRNA-1:five_prime_utr;Parent=Msa0265880-mRNA-1 |
| chr2_2 | CDS | 66228952 | 66229098 | 66228952 | ID=Msa0265880-mRNA-1:cds;Parent=Msa0265880-mRNA-1 |
| chr2_2 | CDS | 66228800 | 66228933 | 66228800 | ID=Msa0265880-mRNA-1:cds;Parent=Msa0265880-mRNA-1 |
| chr2_2 | CDS | 66228528 | 66228721 | 66228528 | ID=Msa0265880-mRNA-1:cds;Parent=Msa0265880-mRNA-1 |
| chr2_2 | CDS | 66228346 | 66228521 | 66228346 | ID=Msa0265880-mRNA-1:cds;Parent=Msa0265880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
