Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445600 | sp|A8MQG7|ASK20_ARATH | 70.283 | 212 | 58 | 4 | 1 | 209 | 1 | 210 | 2.87e-99 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445600 | A0A072VBY1 | 96.429 | 224 | 8 | 0 | 8 | 231 | 1 | 224 | 1.39e-157 | 448 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1445600 | Msa1445610 | 0.806427 | 8.271870e-50 | -8.615850e-47 |
| Msa0265880 | Msa1445600 | 0.820310 | 7.337180e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445600 | MtrunA17_Chr2g0330971 | 96.429 | 224 | 8 | 0 | 8 | 231 | 1 | 224 | 2.67e-161 | 448 |
| Msa1445600 | MtrunA17_Chr2g0330981 | 77.619 | 210 | 46 | 1 | 8 | 216 | 1 | 210 | 8.41e-118 | 338 |
| Msa1445600 | MtrunA17_Chr8g0348821 | 75.893 | 224 | 45 | 5 | 1 | 217 | 1 | 222 | 4.58e-111 | 323 |
| Msa1445600 | MtrunA17_Chr7g0247861 | 74.384 | 203 | 46 | 4 | 12 | 210 | 12 | 212 | 4.21e-105 | 308 |
| Msa1445600 | MtrunA17_Chr6g0470511 | 65.741 | 216 | 65 | 5 | 6 | 217 | 8 | 218 | 1.18e-95 | 283 |
| Msa1445600 | MtrunA17_Chr8g0335691 | 63.462 | 208 | 69 | 3 | 8 | 209 | 1 | 207 | 6.29e-82 | 246 |
| Msa1445600 | MtrunA17_Chr8g0335731 | 63.784 | 185 | 64 | 2 | 8 | 190 | 1 | 184 | 5.58e-78 | 233 |
| Msa1445600 | MtrunA17_Chr8g0335711 | 57.895 | 209 | 77 | 3 | 8 | 209 | 1 | 205 | 2.85e-71 | 220 |
| Msa1445600 | MtrunA17_Chr7g0228441 | 54.545 | 220 | 78 | 6 | 8 | 216 | 1 | 209 | 5.52e-68 | 209 |
| Msa1445600 | MtrunA17_Chr8g0335761 | 53.589 | 209 | 85 | 4 | 8 | 209 | 1 | 204 | 7.35e-67 | 208 |
| Msa1445600 | MtrunA17_Chr3g0103481 | 66.379 | 116 | 39 | 0 | 67 | 182 | 1 | 116 | 3.91e-47 | 152 |
| Msa1445600 | MtrunA17_Chr4g0014241 | 31.915 | 141 | 82 | 4 | 14 | 149 | 3 | 134 | 8.54e-16 | 72.0 |
| Msa1445600 | MtrunA17_Chr5g0405871 | 31.852 | 135 | 83 | 3 | 20 | 149 | 9 | 139 | 1.46e-15 | 71.6 |
| Msa1445600 | MtrunA17_Chr5g0405891 | 31.111 | 135 | 84 | 3 | 20 | 149 | 9 | 139 | 2.26e-15 | 70.9 |
| Msa1445600 | MtrunA17_Chr8g0361911 | 32.192 | 146 | 89 | 4 | 18 | 157 | 8 | 149 | 1.95e-14 | 68.6 |
| Msa1445600 | MtrunA17_Chr3g0139751 | 31.034 | 145 | 89 | 4 | 18 | 155 | 8 | 148 | 5.20e-14 | 67.4 |
| Msa1445600 | MtrunA17_Chr8g0362291 | 29.577 | 142 | 90 | 3 | 20 | 155 | 9 | 146 | 7.52e-14 | 67.0 |
| Msa1445600 | MtrunA17_Chr4g0014271 | 32.609 | 138 | 82 | 5 | 20 | 153 | 11 | 141 | 8.68e-14 | 66.6 |
| Msa1445600 | MtrunA17_Chr4g0014211 | 29.787 | 141 | 83 | 4 | 18 | 149 | 14 | 147 | 9.03e-14 | 67.0 |
| Msa1445600 | MtrunA17_Chr7g0259231 | 32.000 | 100 | 61 | 1 | 61 | 153 | 48 | 147 | 1.82e-13 | 65.9 |
| Msa1445600 | MtrunA17_Chr7g0221641 | 27.778 | 144 | 95 | 3 | 11 | 149 | 1 | 140 | 4.66e-13 | 64.7 |
| Msa1445600 | MtrunA17_Chr4g0015171 | 27.660 | 141 | 93 | 3 | 20 | 155 | 14 | 150 | 4.70e-13 | 64.7 |
| Msa1445600 | MtrunA17_Chr7g0259261 | 28.472 | 144 | 94 | 3 | 11 | 149 | 1 | 140 | 9.54e-13 | 63.9 |
| Msa1445600 | MtrunA17_Chr4g0014231 | 28.169 | 142 | 92 | 4 | 18 | 153 | 26 | 163 | 1.47e-12 | 63.9 |
| Msa1445600 | MtrunA17_Chr7g0221621 | 27.083 | 144 | 96 | 3 | 11 | 149 | 1 | 140 | 2.78e-12 | 62.8 |
| Msa1445600 | MtrunA17_Chr4g0014261 | 28.676 | 136 | 93 | 2 | 20 | 155 | 11 | 142 | 3.25e-12 | 62.4 |
| Msa1445600 | MtrunA17_Chr7g0259271 | 27.778 | 144 | 95 | 3 | 11 | 149 | 1 | 140 | 4.31e-12 | 62.0 |
| Msa1445600 | MtrunA17_Chr4g0015151 | 27.143 | 140 | 91 | 3 | 20 | 153 | 14 | 148 | 2.17e-11 | 60.5 |
| Msa1445600 | MtrunA17_Chr4g0009571 | 26.056 | 142 | 92 | 4 | 8 | 144 | 1 | 134 | 2.55e-11 | 60.1 |
| Msa1445600 | MtrunA17_Chr5g0438791 | 26.056 | 142 | 91 | 4 | 20 | 153 | 9 | 144 | 8.23e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445600 | AT2G45950.3 | 70.283 | 212 | 58 | 4 | 1 | 209 | 1 | 210 | 3.70e-101 | 297 |
| Msa1445600 | AT2G45950.1 | 70.283 | 212 | 58 | 4 | 1 | 209 | 1 | 210 | 3.70e-101 | 297 |
| Msa1445600 | AT2G45950.4 | 70.283 | 212 | 58 | 4 | 1 | 209 | 1 | 210 | 3.70e-101 | 297 |
| Msa1445600 | AT2G45950.5 | 70.283 | 212 | 58 | 4 | 1 | 209 | 1 | 210 | 2.92e-100 | 295 |
| Msa1445600 | AT2G45950.2 | 70.283 | 212 | 58 | 4 | 1 | 209 | 1 | 210 | 2.92e-100 | 295 |
| Msa1445600 | AT3G61415.1 | 69.302 | 215 | 60 | 5 | 1 | 211 | 1 | 213 | 1.75e-99 | 293 |
| Msa1445600 | AT3G61415.2 | 69.302 | 215 | 60 | 5 | 1 | 211 | 1 | 213 | 1.77e-99 | 293 |
| Msa1445600 | AT3G21850.1 | 29.932 | 147 | 91 | 4 | 13 | 153 | 1 | 141 | 8.68e-16 | 72.4 |
| Msa1445600 | AT1G75950.1 | 29.730 | 148 | 89 | 3 | 13 | 149 | 1 | 144 | 1.18e-15 | 72.4 |
| Msa1445600 | AT1G20140.1 | 30.000 | 160 | 90 | 5 | 11 | 155 | 1 | 153 | 9.36e-15 | 70.1 |
| Msa1445600 | AT2G03170.1 | 30.556 | 144 | 90 | 5 | 13 | 153 | 1 | 137 | 2.01e-14 | 68.6 |
| Msa1445600 | AT4G34210.1 | 29.655 | 145 | 93 | 3 | 13 | 153 | 1 | 140 | 4.15e-14 | 67.8 |
| Msa1445600 | AT2G25700.1 | 29.299 | 157 | 95 | 4 | 11 | 155 | 1 | 153 | 1.70e-13 | 66.6 |
| Msa1445600 | AT5G42190.1 | 26.797 | 153 | 87 | 3 | 18 | 149 | 7 | 155 | 1.94e-13 | 66.6 |
| Msa1445600 | AT4G34470.1 | 29.655 | 145 | 93 | 4 | 13 | 153 | 1 | 140 | 3.74e-13 | 65.5 |
| Msa1445600 | AT3G21830.1 | 24.306 | 144 | 102 | 2 | 13 | 153 | 1 | 140 | 3.36e-11 | 60.1 |
Find 38 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTCTTCACATATAAA+TGG | 0.142985 | tig0031149:+637 | None:intergenic |
| CAATATCTTGCTCCACTTGT+TGG | 0.288855 | tig0031149:+671 | None:intergenic |
| CGCTCCTTGTTTGAGCGGCC+TGG | 0.301444 | tig0031149:+511 | None:intergenic |
| TCTTACCGAGGAAGAGAAAT+TGG | 0.313674 | tig0031149:-311 | Msa1445600:CDS |
| TCCTGTTCTCATGTCAGAAA+TGG | 0.338825 | tig0031149:-740 | Msa1445600:CDS |
| AAGACATACTGCACAATTCT+TGG | 0.359550 | tig0031149:+597 | None:intergenic |
| ATATGTGAAGAATTGCAAAA+AGG | 0.385772 | tig0031149:-631 | Msa1445600:CDS |
| TGCAGTATGTCTTCCTCAAC+AGG | 0.387815 | tig0031149:-587 | Msa1445600:CDS |
| AATATCTTGCTCCACTTGTT+GGG | 0.388897 | tig0031149:+672 | None:intergenic |
| CCTTCACATTCTTCTTATGT+TGG | 0.409567 | tig0031149:+72 | None:intergenic |
| CTGCACACAGTCTACAATTC+CGG | 0.410788 | tig0031149:-426 | Msa1445600:CDS |
| GCAATTCTTCACATATAAAT+GGG | 0.411971 | tig0031149:+638 | None:intergenic |
| TCTTCCTCGGTAAGATCATC+AGG | 0.427229 | tig0031149:+319 | None:intergenic |
| GAAGTTTGAAGCCACACATA+AGG | 0.441329 | tig0031149:+706 | None:intergenic |
| TCCATTTCTGACATGAGAAC+AGG | 0.451037 | tig0031149:+739 | None:intergenic |
| TCACTGATGACCCAAGCATT+AGG | 0.467031 | tig0031149:-273 | Msa1445600:CDS |
| GTGTGGCTTCAAACTTCTGA+TGG | 0.483405 | tig0031149:-700 | Msa1445600:CDS |
| GGGCTCCAATTTCTCTTCCT+CGG | 0.502445 | tig0031149:+306 | None:intergenic |
| CACAAATATGCTCTGTGAGT+TGG | 0.512352 | tig0031149:-455 | Msa1445600:CDS |
| GGTTCAAAAGCCTAATGCTT+GGG | 0.515510 | tig0031149:+263 | None:intergenic |
| AATATGCTGCGTATTTCCTC+TGG | 0.531066 | tig0031149:+349 | None:intergenic |
| TGTCGATTTCATCAAGCACC+AGG | 0.534958 | tig0031149:-529 | Msa1445600:CDS |
| CGGTTCAAAAGCCTAATGCT+TGG | 0.541710 | tig0031149:+262 | None:intergenic |
| TTCTCTTCTTGGCATACAAG+CGG | 0.552561 | tig0031149:+242 | None:intergenic |
| ATTGGAGAACTGACCTGTTG+AGG | 0.564195 | tig0031149:+574 | None:intergenic |
| TTGTGAGATCAATCAATGGC+CGG | 0.572234 | tig0031149:+407 | None:intergenic |
| TTAAGAATTAAGCTCCACAT+TGG | 0.575341 | tig0031149:+556 | None:intergenic |
| GTCATCAGTGATGTTTAACA+AGG | 0.579418 | tig0031149:+285 | None:intergenic |
| CTCCATTAATAAAAGACAGA+AGG | 0.582081 | tig0031149:+146 | None:intergenic |
| AGCACCAGGCCGCTCAAACA+AGG | 0.585987 | tig0031149:-515 | Msa1445600:CDS |
| CGACTTGTGAGATCAATCAA+TGG | 0.592768 | tig0031149:+403 | None:intergenic |
| TGATGGTTCAACCCAACAAG+TGG | 0.601578 | tig0031149:-683 | Msa1445600:CDS |
| AACAGGTCAGTTCTCCAATG+TGG | 0.631635 | tig0031149:-570 | Msa1445600:CDS |
| CCAACATAAGAAGAATGTGA+AGG | 0.658942 | tig0031149:-72 | None:intergenic |
| ACTTTCGCTCCTTGTTTGAG+CGG | 0.668556 | tig0031149:+506 | None:intergenic |
| TCATCAGTGATGTTTAACAA+GGG | 0.698660 | tig0031149:+286 | None:intergenic |
| TGTGCCTGATGATCTTACCG+AGG | 0.742578 | tig0031149:-323 | Msa1445600:CDS |
| AGATGACAAAGCCTTATGTG+TGG | 0.770261 | tig0031149:-717 | Msa1445600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAATGAAATATATTA+AGG | - | tig0031149:876-895 | Msa1445600:intron | 10.0% |
| !! | TAAGAAAATGAAATATATTA+AGG | - | tig0031149:876-895 | Msa1445600:intron | 10.0% |
| !!! | AAATAATTTAAAATGAGTAC+TGG | - | tig0031149:415-434 | Msa1445600:CDS | 15.0% |
| !! | ACAATTTAATACTTATTTCA+TGG | - | tig0031149:453-472 | Msa1445600:CDS | 15.0% |
| !! | CAATTTAATACTTATTTCAT+GGG | - | tig0031149:454-473 | Msa1445600:CDS | 15.0% |
| !!! | ATTTTTAGTATTATAGTTGT+GGG | - | tig0031149:668-687 | Msa1445600:CDS | 15.0% |
| !!! | TCTAATATTTTTGTTCATTT+AGG | - | tig0031149:933-952 | Msa1445600:intron | 15.0% |
| !!! | AAATAATTTAAAATGAGTAC+TGG | - | tig0031149:415-434 | Msa1445600:CDS | 15.0% |
| !! | ACAATTTAATACTTATTTCA+TGG | - | tig0031149:453-472 | Msa1445600:CDS | 15.0% |
| !! | CAATTTAATACTTATTTCAT+GGG | - | tig0031149:454-473 | Msa1445600:CDS | 15.0% |
| !!! | ATTTTTAGTATTATAGTTGT+GGG | - | tig0031149:668-687 | Msa1445600:CDS | 15.0% |
| !!! | TCTAATATTTTTGTTCATTT+AGG | - | tig0031149:933-952 | Msa1445600:intron | 15.0% |
| !! | TTGATTAAATATGCAAATGT+TGG | - | tig0031149:83-102 | Msa1445600:CDS | 20.0% |
| !! | TGATTAAATATGCAAATGTT+GGG | - | tig0031149:84-103 | Msa1445600:CDS | 20.0% |
| !!! | ATATATGCTCTATAATTTGT+TGG | + | tig0031149:481-500 | None:intergenic | 20.0% |
| !!! | CTTAATCATCAAGATTTTAT+AGG | - | tig0031149:632-651 | Msa1445600:CDS | 20.0% |
| !!! | CATTTTTAGTATTATAGTTG+TGG | - | tig0031149:667-686 | Msa1445600:CDS | 20.0% |
| !! | TGAAATATATTAAGGAGAAA+AGG | - | tig0031149:884-903 | Msa1445600:intron | 20.0% |
| !!! | ACTTCTAAGAATAAAAAAAG+AGG | - | tig0031149:1599-1618 | Msa1445600:intron | 20.0% |
| !! | GAATAAAAAAAGAGGAAAAA+AGG | - | tig0031149:1607-1626 | Msa1445600:intron | 20.0% |
| !! | TTGATTAAATATGCAAATGT+TGG | - | tig0031149:83-102 | Msa1445600:CDS | 20.0% |
| !! | TGATTAAATATGCAAATGTT+GGG | - | tig0031149:84-103 | Msa1445600:CDS | 20.0% |
| !!! | ATATATGCTCTATAATTTGT+TGG | + | tig0031149:481-500 | None:intergenic | 20.0% |
| !!! | CTTAATCATCAAGATTTTAT+AGG | - | tig0031149:632-651 | Msa1445600:CDS | 20.0% |
| !!! | CATTTTTAGTATTATAGTTG+TGG | - | tig0031149:667-686 | Msa1445600:CDS | 20.0% |
| !! | TGAAATATATTAAGGAGAAA+AGG | - | tig0031149:884-903 | Msa1445600:intron | 20.0% |
| !!! | ACTTCTAAGAATAAAAAAAG+AGG | - | tig0031149:1599-1618 | Msa1445600:intron | 20.0% |
| !! | GAATAAAAAAAGAGGAAAAA+AGG | - | tig0031149:1607-1626 | Msa1445600:intron | 20.0% |
| !!! | TTTTAGTTTAATTCATGGCT+GGG | - | tig0031149:691-710 | Msa1445600:CDS | 25.0% |
| !!! | TTTTTGCTGATTTGTAAGTT+AGG | - | tig0031149:775-794 | Msa1445600:intron | 25.0% |
| ! | TAAAAAAACTTGTCTTCCAT+GGG | + | tig0031149:836-855 | None:intergenic | 25.0% |
| ! | TTAAAAAAACTTGTCTTCCA+TGG | + | tig0031149:837-856 | None:intergenic | 25.0% |
| ! | GCAATTCTTCACATATAAAT+GGG | + | tig0031149:1067-1086 | None:intergenic | 25.0% |
| ! | TGCAATTCTTCACATATAAA+TGG | + | tig0031149:1068-1087 | None:intergenic | 25.0% |
| ! | ATATGTGAAGAATTGCAAAA+AGG | - | tig0031149:1071-1090 | Msa1445600:intron | 25.0% |
| ! | TAGCTCGAATAATTGAAAAA+AGG | - | tig0031149:1327-1346 | Msa1445600:intron | 25.0% |
| !!! | TTTTAGTTTAATTCATGGCT+GGG | - | tig0031149:691-710 | Msa1445600:CDS | 25.0% |
| !!! | TTTTTGCTGATTTGTAAGTT+AGG | - | tig0031149:775-794 | Msa1445600:intron | 25.0% |
| ! | TAAAAAAACTTGTCTTCCAT+GGG | + | tig0031149:836-855 | None:intergenic | 25.0% |
| ! | TTAAAAAAACTTGTCTTCCA+TGG | + | tig0031149:837-856 | None:intergenic | 25.0% |
| ! | GCAATTCTTCACATATAAAT+GGG | + | tig0031149:1067-1086 | None:intergenic | 25.0% |
| ! | TGCAATTCTTCACATATAAA+TGG | + | tig0031149:1068-1087 | None:intergenic | 25.0% |
| ! | ATATGTGAAGAATTGCAAAA+AGG | - | tig0031149:1071-1090 | Msa1445600:intron | 25.0% |
| ! | TAGCTCGAATAATTGAAAAA+AGG | - | tig0031149:1327-1346 | Msa1445600:intron | 25.0% |
| AATTGAAGGAAATTAAGGGA+AGG | + | tig0031149:180-199 | None:intergenic | 30.0% | |
| CCAGAATTGAAGGAAATTAA+GGG | + | tig0031149:184-203 | None:intergenic | 30.0% | |
| ACCAGAATTGAAGGAAATTA+AGG | + | tig0031149:185-204 | None:intergenic | 30.0% | |
| ATACTAAAAATGCCAACAGA+TGG | + | tig0031149:659-678 | None:intergenic | 30.0% | |
| !!! | GTGGGTTTTAGTTTAATTCA+TGG | - | tig0031149:686-705 | Msa1445600:CDS | 30.0% |
| !!! | GTTTTAGTTTAATTCATGGC+TGG | - | tig0031149:690-709 | Msa1445600:CDS | 30.0% |
| ! | TTTTCTATTATAAAGCCCCA+TGG | - | tig0031149:817-836 | Msa1445600:intron | 30.0% |
| AAAAAAACTTGTCTTCCATG+GGG | + | tig0031149:835-854 | None:intergenic | 30.0% | |
| ! | GACAAGACATTTTGCAAAAA+TGG | - | tig0031149:908-927 | Msa1445600:intron | 30.0% |
| TTAAGAATTAAGCTCCACAT+TGG | + | tig0031149:1149-1168 | None:intergenic | 30.0% | |
| TCATCAGTGATGTTTAACAA+GGG | + | tig0031149:1419-1438 | None:intergenic | 30.0% | |
| ! | AAGTAGTTCTTTTCTCTTCT+TGG | + | tig0031149:1474-1493 | None:intergenic | 30.0% |
| ! | GACCTTCTGTCTTTTATTAA+TGG | - | tig0031149:1554-1573 | Msa1445600:intron | 30.0% |
| CTCCATTAATAAAAGACAGA+AGG | + | tig0031149:1559-1578 | None:intergenic | 30.0% | |
| ! | TTTTATTAATGGAGATCCGA+AGG | - | tig0031149:1565-1584 | Msa1445600:intron | 30.0% |
| !!! | GAAGTAGTTTTAATCTCCTT+CGG | + | tig0031149:1584-1603 | None:intergenic | 30.0% |
| AATTGAAGGAAATTAAGGGA+AGG | + | tig0031149:180-199 | None:intergenic | 30.0% | |
| CCAGAATTGAAGGAAATTAA+GGG | + | tig0031149:184-203 | None:intergenic | 30.0% | |
| ACCAGAATTGAAGGAAATTA+AGG | + | tig0031149:185-204 | None:intergenic | 30.0% | |
| ATACTAAAAATGCCAACAGA+TGG | + | tig0031149:659-678 | None:intergenic | 30.0% | |
| !!! | GTGGGTTTTAGTTTAATTCA+TGG | - | tig0031149:686-705 | Msa1445600:CDS | 30.0% |
| !!! | GTTTTAGTTTAATTCATGGC+TGG | - | tig0031149:690-709 | Msa1445600:CDS | 30.0% |
| ! | TTTTCTATTATAAAGCCCCA+TGG | - | tig0031149:817-836 | Msa1445600:intron | 30.0% |
| AAAAAAACTTGTCTTCCATG+GGG | + | tig0031149:835-854 | None:intergenic | 30.0% | |
| ! | GACAAGACATTTTGCAAAAA+TGG | - | tig0031149:908-927 | Msa1445600:intron | 30.0% |
| TTAAGAATTAAGCTCCACAT+TGG | + | tig0031149:1149-1168 | None:intergenic | 30.0% | |
| TCATCAGTGATGTTTAACAA+GGG | + | tig0031149:1419-1438 | None:intergenic | 30.0% | |
| ! | AAGTAGTTCTTTTCTCTTCT+TGG | + | tig0031149:1474-1493 | None:intergenic | 30.0% |
| ! | GACCTTCTGTCTTTTATTAA+TGG | - | tig0031149:1554-1573 | Msa1445600:intron | 30.0% |
| CTCCATTAATAAAAGACAGA+AGG | + | tig0031149:1559-1578 | None:intergenic | 30.0% | |
| ! | TTTTATTAATGGAGATCCGA+AGG | - | tig0031149:1565-1584 | Msa1445600:intron | 30.0% |
| !!! | GAAGTAGTTTTAATCTCCTT+CGG | + | tig0031149:1584-1603 | None:intergenic | 30.0% |
| CCCTTAATTTCCTTCAATTC+TGG | - | tig0031149:181-200 | Msa1445600:CDS | 35.0% | |
| ! | GATTTTATAGGTCCATCTGT+TGG | - | tig0031149:644-663 | Msa1445600:CDS | 35.0% |
| AATATCTTGCTCCACTTGTT+GGG | + | tig0031149:1033-1052 | None:intergenic | 35.0% | |
| TGAAGAATTGCAAAAAGGCA+TGG | - | tig0031149:1076-1095 | Msa1445600:intron | 35.0% | |
| ! | GAAGAATTGCAAAAAGGCAT+GGG | - | tig0031149:1077-1096 | Msa1445600:intron | 35.0% |
| AAGACATACTGCACAATTCT+TGG | + | tig0031149:1108-1127 | None:intergenic | 35.0% | |
| GTCATCAGTGATGTTTAACA+AGG | + | tig0031149:1420-1439 | None:intergenic | 35.0% | |
| CCCTTAATTTCCTTCAATTC+TGG | - | tig0031149:181-200 | Msa1445600:CDS | 35.0% | |
| ! | GATTTTATAGGTCCATCTGT+TGG | - | tig0031149:644-663 | Msa1445600:CDS | 35.0% |
| AATATCTTGCTCCACTTGTT+GGG | + | tig0031149:1033-1052 | None:intergenic | 35.0% | |
| TGAAGAATTGCAAAAAGGCA+TGG | - | tig0031149:1076-1095 | Msa1445600:intron | 35.0% | |
| ! | GAAGAATTGCAAAAAGGCAT+GGG | - | tig0031149:1077-1096 | Msa1445600:intron | 35.0% |
| AAGACATACTGCACAATTCT+TGG | + | tig0031149:1108-1127 | None:intergenic | 35.0% | |
| GTCATCAGTGATGTTTAACA+AGG | + | tig0031149:1420-1439 | None:intergenic | 35.0% | |
| CACATCAGTACCAGAATTGA+AGG | + | tig0031149:194-213 | None:intergenic | 40.0% | |
| TCCTGTTCTCATGTCAGAAA+TGG | - | tig0031149:962-981 | Msa1445600:intron | 40.0% | |
| TCCATTTCTGACATGAGAAC+AGG | + | tig0031149:966-985 | None:intergenic | 40.0% | |
| ! | AGATGACAAAGCCTTATGTG+TGG | - | tig0031149:985-1004 | Msa1445600:intron | 40.0% |
| ! | GAAGTTTGAAGCCACACATA+AGG | + | tig0031149:999-1018 | None:intergenic | 40.0% |
| CAATATCTTGCTCCACTTGT+TGG | + | tig0031149:1034-1053 | None:intergenic | 40.0% | |
| CACAAATATGCTCTGTGAGT+TGG | - | tig0031149:1247-1266 | Msa1445600:intron | 40.0% | |
| TTGTGAGATCAATCAATGGC+CGG | + | tig0031149:1298-1317 | None:intergenic | 40.0% | |
| CGACTTGTGAGATCAATCAA+TGG | + | tig0031149:1302-1321 | None:intergenic | 40.0% | |
| AATTGAAAAAAGGTCGCCAG+AGG | - | tig0031149:1337-1356 | Msa1445600:intron | 40.0% | |
| AATATGCTGCGTATTTCCTC+TGG | + | tig0031149:1356-1375 | None:intergenic | 40.0% | |
| TCTTACCGAGGAAGAGAAAT+TGG | - | tig0031149:1391-1410 | Msa1445600:intron | 40.0% | |
| GGTTCAAAAGCCTAATGCTT+GGG | + | tig0031149:1442-1461 | None:intergenic | 40.0% | |
| TTCTCTTCTTGGCATACAAG+CGG | + | tig0031149:1463-1482 | None:intergenic | 40.0% | |
| CACATCAGTACCAGAATTGA+AGG | + | tig0031149:194-213 | None:intergenic | 40.0% | |
| TCCTGTTCTCATGTCAGAAA+TGG | - | tig0031149:962-981 | Msa1445600:intron | 40.0% | |
| TCCATTTCTGACATGAGAAC+AGG | + | tig0031149:966-985 | None:intergenic | 40.0% | |
| ! | AGATGACAAAGCCTTATGTG+TGG | - | tig0031149:985-1004 | Msa1445600:intron | 40.0% |
| ! | GAAGTTTGAAGCCACACATA+AGG | + | tig0031149:999-1018 | None:intergenic | 40.0% |
| CAATATCTTGCTCCACTTGT+TGG | + | tig0031149:1034-1053 | None:intergenic | 40.0% | |
| CACAAATATGCTCTGTGAGT+TGG | - | tig0031149:1247-1266 | Msa1445600:intron | 40.0% | |
| TTGTGAGATCAATCAATGGC+CGG | + | tig0031149:1298-1317 | None:intergenic | 40.0% | |
| CGACTTGTGAGATCAATCAA+TGG | + | tig0031149:1302-1321 | None:intergenic | 40.0% | |
| AATTGAAAAAAGGTCGCCAG+AGG | - | tig0031149:1337-1356 | Msa1445600:intron | 40.0% | |
| AATATGCTGCGTATTTCCTC+TGG | + | tig0031149:1356-1375 | None:intergenic | 40.0% | |
| TCTTACCGAGGAAGAGAAAT+TGG | - | tig0031149:1391-1410 | Msa1445600:intron | 40.0% | |
| GGTTCAAAAGCCTAATGCTT+GGG | + | tig0031149:1442-1461 | None:intergenic | 40.0% | |
| TTCTCTTCTTGGCATACAAG+CGG | + | tig0031149:1463-1482 | None:intergenic | 40.0% | |
| TGATTAAGCACGCCAATCAG+TGG | + | tig0031149:620-639 | None:intergenic | 45.0% | |
| GCAACATGCTGCTAGTAACT+AGG | + | tig0031149:723-742 | None:intergenic | 45.0% | |
| GTGTGGCTTCAAACTTCTGA+TGG | - | tig0031149:1002-1021 | Msa1445600:intron | 45.0% | |
| TGATGGTTCAACCCAACAAG+TGG | - | tig0031149:1019-1038 | Msa1445600:intron | 45.0% | |
| TGCAGTATGTCTTCCTCAAC+AGG | - | tig0031149:1115-1134 | Msa1445600:intron | 45.0% | |
| ATTGGAGAACTGACCTGTTG+AGG | + | tig0031149:1131-1150 | None:intergenic | 45.0% | |
| AACAGGTCAGTTCTCCAATG+TGG | - | tig0031149:1132-1151 | Msa1445600:intron | 45.0% | |
| !! | TGTCGATTTCATCAAGCACC+AGG | - | tig0031149:1173-1192 | Msa1445600:intron | 45.0% |
| ! | ACTTTCGCTCCTTGTTTGAG+CGG | + | tig0031149:1199-1218 | None:intergenic | 45.0% |
| CTGCACACAGTCTACAATTC+CGG | - | tig0031149:1276-1295 | Msa1445600:intron | 45.0% | |
| TCTTCCTCGGTAAGATCATC+AGG | + | tig0031149:1386-1405 | None:intergenic | 45.0% | |
| TCACTGATGACCCAAGCATT+AGG | - | tig0031149:1429-1448 | Msa1445600:intron | 45.0% | |
| CGGTTCAAAAGCCTAATGCT+TGG | + | tig0031149:1443-1462 | None:intergenic | 45.0% | |
| TGATTAAGCACGCCAATCAG+TGG | + | tig0031149:620-639 | None:intergenic | 45.0% | |
| GCAACATGCTGCTAGTAACT+AGG | + | tig0031149:723-742 | None:intergenic | 45.0% | |
| GTGTGGCTTCAAACTTCTGA+TGG | - | tig0031149:1002-1021 | Msa1445600:intron | 45.0% | |
| TGATGGTTCAACCCAACAAG+TGG | - | tig0031149:1019-1038 | Msa1445600:intron | 45.0% | |
| TGCAGTATGTCTTCCTCAAC+AGG | - | tig0031149:1115-1134 | Msa1445600:intron | 45.0% | |
| ATTGGAGAACTGACCTGTTG+AGG | + | tig0031149:1131-1150 | None:intergenic | 45.0% | |
| AACAGGTCAGTTCTCCAATG+TGG | - | tig0031149:1132-1151 | Msa1445600:intron | 45.0% | |
| !! | TGTCGATTTCATCAAGCACC+AGG | - | tig0031149:1173-1192 | Msa1445600:intron | 45.0% |
| ! | ACTTTCGCTCCTTGTTTGAG+CGG | + | tig0031149:1199-1218 | None:intergenic | 45.0% |
| CTGCACACAGTCTACAATTC+CGG | - | tig0031149:1276-1295 | Msa1445600:intron | 45.0% | |
| TCTTCCTCGGTAAGATCATC+AGG | + | tig0031149:1386-1405 | None:intergenic | 45.0% | |
| TCACTGATGACCCAAGCATT+AGG | - | tig0031149:1429-1448 | Msa1445600:intron | 45.0% | |
| CGGTTCAAAAGCCTAATGCT+TGG | + | tig0031149:1443-1462 | None:intergenic | 45.0% | |
| ! | ATTTTCCACCACCCAGACCA+TGG | - | tig0031149:583-602 | Msa1445600:CDS | 50.0% |
| TTAAGCACGCCAATCAGTGG+CGG | + | tig0031149:617-636 | None:intergenic | 50.0% | |
| TGTGCCTGATGATCTTACCG+AGG | - | tig0031149:1379-1398 | Msa1445600:intron | 50.0% | |
| GGGCTCCAATTTCTCTTCCT+CGG | + | tig0031149:1399-1418 | None:intergenic | 50.0% | |
| ! | ATTTTCCACCACCCAGACCA+TGG | - | tig0031149:583-602 | Msa1445600:CDS | 50.0% |
| TTAAGCACGCCAATCAGTGG+CGG | + | tig0031149:617-636 | None:intergenic | 50.0% | |
| TGTGCCTGATGATCTTACCG+AGG | - | tig0031149:1379-1398 | Msa1445600:intron | 50.0% | |
| GGGCTCCAATTTCTCTTCCT+CGG | + | tig0031149:1399-1418 | None:intergenic | 50.0% | |
| ATCCACAACCATGGTCTGGG+TGG | + | tig0031149:594-613 | None:intergenic | 55.0% | |
| CGGATCCACAACCATGGTCT+GGG | + | tig0031149:597-616 | None:intergenic | 55.0% | |
| GTTGTGGATCCGCCACTGAT+TGG | - | tig0031149:605-624 | Msa1445600:CDS | 55.0% | |
| ATCCACAACCATGGTCTGGG+TGG | + | tig0031149:594-613 | None:intergenic | 55.0% | |
| CGGATCCACAACCATGGTCT+GGG | + | tig0031149:597-616 | None:intergenic | 55.0% | |
| GTTGTGGATCCGCCACTGAT+TGG | - | tig0031149:605-624 | Msa1445600:CDS | 55.0% | |
| CACAACCATGGTCTGGGTGG+TGG | + | tig0031149:591-610 | None:intergenic | 60.0% | |
| CACCACCCAGACCATGGTTG+TGG | - | tig0031149:589-608 | Msa1445600:CDS | 60.0% | |
| GCGGATCCACAACCATGGTC+TGG | + | tig0031149:598-617 | None:intergenic | 60.0% | |
| !! | CAGTGGCGGATCCACAACCA+TGG | + | tig0031149:603-622 | None:intergenic | 60.0% |
| AGCACCAGGCCGCTCAAACA+AGG | - | tig0031149:1187-1206 | Msa1445600:intron | 60.0% | |
| CACAACCATGGTCTGGGTGG+TGG | + | tig0031149:591-610 | None:intergenic | 60.0% | |
| CACCACCCAGACCATGGTTG+TGG | - | tig0031149:589-608 | Msa1445600:CDS | 60.0% | |
| GCGGATCCACAACCATGGTC+TGG | + | tig0031149:598-617 | None:intergenic | 60.0% | |
| !! | CAGTGGCGGATCCACAACCA+TGG | + | tig0031149:603-622 | None:intergenic | 60.0% |
| AGCACCAGGCCGCTCAAACA+AGG | - | tig0031149:1187-1206 | Msa1445600:intron | 60.0% | |
| ! | CGCTCCTTGTTTGAGCGGCC+TGG | + | tig0031149:1194-1213 | None:intergenic | 65.0% |
| ! | CGCTCCTTGTTTGAGCGGCC+TGG | + | tig0031149:1194-1213 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031149 | gene | 75 | 1649 | 75 | ID=Msa1445600;Name=Msa1445600 |
| tig0031149 | mRNA | 75 | 1649 | 75 | ID=Msa1445600-mRNA-1;Parent=Msa1445600;Name=Msa1445600-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.5|1|1|2|0|232 |
| tig0031149 | exon | 1646 | 1649 | 1646 | ID=Msa1445600-mRNA-1:exon:15083;Parent=Msa1445600-mRNA-1 |
| tig0031149 | exon | 75 | 769 | 75 | ID=Msa1445600-mRNA-1:exon:15082;Parent=Msa1445600-mRNA-1 |
| tig0031149 | CDS | 1646 | 1649 | 1646 | ID=Msa1445600-mRNA-1:cds;Parent=Msa1445600-mRNA-1 |
| tig0031149 | CDS | 75 | 769 | 75 | ID=Msa1445600-mRNA-1:cds;Parent=Msa1445600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
