AlfalfaGEDB | Msa0267380

M. sativa cultivar zhongmu-4 / Msa0267380

KEGG: K16570
GO: GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0008275 GO:0009605 GO:0009607 GO:0009624 GO:0009898 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031967 GO:0031975 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032886 GO:0032991 GO:0033043 GO:0034622 GO:0043015 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044459 GO:0044464 GO:0046785 GO:0048285 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051704 GO:0051707 GO:0055028 GO:0065003 GO:0065007 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0098552 GO:0098562 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047
PFAM: PF17681.4

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267380	XP_003625292.1	98.454	841	13	0	1	841	1	841	0.0	1714

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267380	sp\|Q9FG37\|GACP3_ARATH	70.165	848	231	6	3	841	2	836	0.0	1212

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267380	G7KWA0	98.454	841	13	0	1	841	1	841	0.0	1714

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0166000	Msa0267380	0.800387	1.475985e-48	-8.615850e-47
Msa0267380	Msa0520670	0.801444	8.978104e-49	-8.615850e-47
Msa0267380	Msa1035470	0.911519	5.545701e-83	-8.615850e-47
Msa0267380	Msa1163100	0.841404	4.850291e-58	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267380	MtrunA17_Chr7g0258931	98.454	841	13	0	1	841	1	841	0.0	1714
Msa0267380	MtrunA17_Chr8g0338541	26.842	570	321	21	181	700	20	543	1.32e-42	165
Msa0267380	MtrunA17_Chr1g0195431	22.500	480	267	10	331	708	160	636	1.13e-24	110
Msa0267380	MtrunA17_Chr5g0393551	26.394	269	176	8	477	731	851	1111	7.28e-17	85.9

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267380	AT5G06680.1	70.165	848	231	6	3	841	2	836	0.0	1212
Msa0267380	AT5G17410.1	26.224	572	335	22	178	708	59	584	2.21e-34	140
Msa0267380	AT5G17410.2	26.224	572	335	22	178	708	60	585	2.59e-34	140
Msa0267380	AT3G53760.2	23.124	493	282	13	331	729	176	665	4.47e-24	108
Msa0267380	AT3G53760.1	23.124	493	282	13	331	729	176	665	5.04e-24	108
Msa0267380	AT3G43610.1	25.623	281	176	8	477	731	850	1123	4.06e-15	80.5
Msa0267380	AT3G43610.3	25.623	281	176	8	477	731	813	1086	4.52e-15	80.5
Msa0267380	AT3G53760.3	28.221	163	112	3	570	729	477	637	8.74e-15	79.0
Msa0267380	AT3G43610.2	25.532	282	176	9	477	731	850	1124	3.04e-14	77.8

Showing 1 to 9 of 9 entries

Previous1Next

Find 236 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATGCCACATGAAAG+CGG	0.670653	2_2:+68966480	Msa0267380:CDS
AAAATTCATTGAAATCGAGA+CGG	0.627773	2_2:-68967375	None:intergenic
AAACGCCGTCTCGCCACCGA+TGG	0.571083	2_2:+68965013	Msa0267380:CDS
AAAGAGCTTATTGTGTTTGC+GGG	0.370957	2_2:-68966372	None:intergenic
AAAGCCTTAACAAAACGCGC+TGG	0.650198	2_2:+68967229	Msa0267380:CDS
AAATTGGGAAGAAGAACGGA+AGG	0.626685	2_2:-68965178	None:intergenic
AAATTTGATGAAGAGAGTGA+TGG	0.655630	2_2:+68965409	Msa0267380:CDS
AACATGCACTTATTGGTGCC+TGG	0.540811	2_2:+68966631	Msa0267380:CDS
AACGACCATCGGTGGCGAGA+CGG	0.598780	2_2:-68965018	None:intergenic
AACGAGTCTTAATTAACTAA+AGG	0.462340	2_2:+68967574	Msa0267380:three_prime_UTR

Showing 1 to 10 of 236 entries

Previous1 2 3 4 5…24Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CACTCATATCGATAATAAGT+GGG	+	chr2_2:68965093-68965112	Msa0267380:CDS	30.0%
GATATTGAAGAGATGAAGTA+GGG	-	chr2_2:68965119-68965138	None:intergenic	30.0%
TGATATTGAAGAGATGAAGT+AGG	-	chr2_2:68965120-68965139	None:intergenic	30.0%
TCTTCCCAATTTAACGATTT+CGG	+	chr2_2:68965189-68965208	Msa0267380:CDS	30.0%
TTCTCCGAAATCGTTAAATT+GGG	-	chr2_2:68965196-68965215	None:intergenic	30.0%
ATTCTCCGAAATCGTTAAAT+TGG	-	chr2_2:68965197-68965216	None:intergenic	30.0%
TGAGTATGTGAAATTGATGA+AGG	+	chr2_2:68965309-68965328	Msa0267380:CDS	30.0%
AAATTTGATGAAGAGAGTGA+TGG	+	chr2_2:68965409-68965428	Msa0267380:CDS	30.0%
TATTGTTTAAGAGGGTTGTT+GGG	+	chr2_2:68965506-68965525	Msa0267380:CDS	30.0%
ATTCATTTACATGCTAGACA+TGG	+	chr2_2:68965820-68965839	Msa0267380:CDS	30.0%

Showing 1 to 10 of 335 entries

Previous1 2 3 4 5…34Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	68964663	68968231	68964663	ID=Msa0267380;Name=Msa0267380
chr2_2	mRNA	68964663	68968231	68964663	ID=Msa0267380-mRNA-1;Parent=Msa0267380;Name=Msa0267380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=140\|1\|1\|1\|0.5\|0.33\|3\|708\|841
chr2_2	exon	68964663	68967039	68964663	ID=Msa0267380-mRNA-1:exon:21880;Parent=Msa0267380-mRNA-1
chr2_2	exon	68967129	68967595	68967129	ID=Msa0267380-mRNA-1:exon:21881;Parent=Msa0267380-mRNA-1
chr2_2	exon	68967702	68968231	68967702	ID=Msa0267380-mRNA-1:exon:21882;Parent=Msa0267380-mRNA-1
chr2_2	five_prime_UTR	68964663	68964802	68964663	ID=Msa0267380-mRNA-1:five_prime_utr;Parent=Msa0267380-mRNA-1
chr2_2	CDS	68964803	68967039	68964803	ID=Msa0267380-mRNA-1:cds;Parent=Msa0267380-mRNA-1
chr2_2	CDS	68967129	68967417	68967129	ID=Msa0267380-mRNA-1:cds;Parent=Msa0267380-mRNA-1
chr2_2	three_prime_UTR	68967418	68967595	68967418	ID=Msa0267380-mRNA-1:three_prime_utr;Parent=Msa0267380-mRNA-1
chr2_2	three_prime_UTR	68967702	68968231	68967702	ID=Msa0267380-mRNA-1:three_prime_utr;Parent=Msa0267380-mRNA-1

Gene Sequence

>Msa0267380

ATGGACGACGAAGAAGAACAACAAAAACTCCCAGATCTAGTAAAAGCCCTAGTCCACCACCTCCTCTCTCAAAATCTCCCCCCAAATTCCCAACCCATAAACCCTAACTCCCCTCAATTCCAAAACTCCCTCCGTTACGCTCACCGCATTCTCTCTTCCCATTTAACCCCCTCCATCACCCCCGACTCCGCCGCCGTCGCCGATTCCATCAAACGCCGTCTCGCCACCGATGGTCGTTCCTCCGAAGCCCTCTCCTTCGCTGACCTTTACACCAAATTCTCCACCAAAGCCACTCATATCGATAATAAGTGGGCCCTACTTCATCTCTTCAATATCATCTCTCAAGATCGTAAATCCGCCGCTAAGTCGAATGACCCTTCCGTTCTTCTTCCCAATTTAACGATTTCGGAGAATAACGTTCAAAGACGCGGTGAAAATAATGGATTTAATGATGGTGTTGTCATTCTTGCGAGGGATCCGAAGAATCGACGGGAAATCGCATTTAATGAGTATGTGAAATTGATGAAGGAAGAGAATGATGTGACTGAGGAAGCTATGGTGACTGATGTGATTTATGCTTGTCAAGGTGTGGATGGGAAATATGTGAAATTTGATGAAGAGAGTGATGGTTATGTTTTATTGGATTCAATTAGGGTTTCTAGGGCTAGTAGTAGTATGGTTTATAAGCTTTGTGAATTAGGGGTATTGTTTAAGAGGGTTGTTGGGTTTATTGAGATGAGTTTGGGTAGGTCTCCGGTAGAGGATGTTGGGACGGTTGGGCAGGCTTTTTGTGCTGCATTGCAGGATGAGTTGAGTGATTATTATAAGTTGTTGGCTGTGCTTGAGGCTCAGAGTTCGAATCCGATTCCGTTGCTGTCTGAGGGTGTGAGTTCGGGGAATTATTTATCGTTGAGGAGATTAGCGGTTTGGCTTGCTGAGCCGATGGTGAAGATGAGGTTGATGGCAGATTTGGTTGAGAAGTGTAGGGTTTTAAGAGGCGGGGCGATGGCGGGTGCGATTCATTTACATGCTAGACATGGGGATCCGATGGTTCATGAGTTTATGAAGAGGTTGCTTCAGCGTGTGTGTTCTCCGCTTTTTGAAATGGTGAAGAGGTGGGTTTTGGAAGGGGAGTTGGAAGATATTTTTGTTGAGTTTTTCATTGTTGGGCAGCCTGTGAAAGCTGAATCGCTTTGGAGAGAGGGATATAGGCTCTATGATGCTATGCTTCCTTCTTTTATTTCGGCTTCTCTTGCTCAGAGGATTTTGAGGACTGGAAAGTCCATAAATTTTCTCCGTGTTTGCTGTGAGGACCGTGGTTGGGCTCGTGCTGCGACTGAAGATACAGGGGCAATGGCAAGACGCGGTGGTTTTGGTTACGGGGAAACTGATACCCTTGAGTCATTGGTTGATGAAGCTTCAAAAAGAATTGATAAGCATCTATTGGATGTAATTTATGAGAGGTATAAATTCAAAGAGCACTGTCTTGCGATTAAGCGGTATTTGTTGCTTGGCCAAGGTGATTTTGTGCAATATCTAATGGATATTGTTGGGCCTGAACTTTCTGTGCCCGCAAACACAATAAGCTCTTTCAAACTTGCAGGTTTGCTGGAAACAGCAATTCGGGCGTCAAATGCTCAGTATGATGACCCTGATATTTTGGATAGGCTCAGGGTCAAAATGATGCCACATGAAAGCGGTGATAGGGGCTGGGATGTATTCTCACTGGAATATGATGCAAGAGTTCCACTAGATACTGTGTTCACAGAGTCTGTGATGACGAGGTATTTAAGAATTTTTAATTTTCTATGGAAGCTTAAGAGAGTGGAACATGCACTTATTGGTGCCTGGAAGACCATGAAACCAAATTGCATAACTTCTAATACCTTTAATAGATTGCAACATGCTGTAAAGATGCAGCTAGTTTCAGCATTGAGGCGCTGCCAAGTTCTTTGGGTTGAAATTAATCACTTCATTTCAAACTTGCAATATTATATAATGTTTGAAGTCTTGGAAATATCATGGTCAAACTTTTTAAGTGAGATGGAAGTAGCCAAGGATCTTGATGATCTACTTGCAGCTCACGAGAAATATATGAATTCAATTGTAGAGAAATCTCTCCTTGGAGAACTCTCTCAGTCCCTTTACAAGTCACTAATAGTAATATTTGATCTTATATTACGTTTTCGGAGCCATGCGGATATTTTATACGAAGGCATTCATGAGTTGCAAGCAAGAATCACAGAGTCCTCACTGTCCTCTCGAGACCAGAAGAAAACACGGAAGCGATTGACTGATAAGTCATCGGAAGAAGAATCCTGGATTGCTGATGGGAGAAAAGCCTTAACAAAACGCGCTGGTGAATTTCTCCAAAAAATGGAACAAGATCTGGATGCAATATCTAAGGAGTATTCATCATTGCAAGAGGATTTCATTTCTCAGTTGCCTGTGCAGCAGCATGTTGATCTAAAGTTTCTCTTTTTCCGTCTCGATTTCAATGAATTTTATAGGCGGGTTGTGTCGTAG

Protein sequence

>Msa0267380

MDDEEEQQKLPDLVKALVHHLLSQNLPPNSQPINPNSPQFQNSLRYAHRILSSHLTPSITPDSAAVADSIKRRLATDGRSSEALSFADLYTKFSTKATHIDNKWALLHLFNIISQDRKSAAKSNDPSVLLPNLTISENNVQRRGENNGFNDGVVILARDPKNRREIAFNEYVKLMKEENDVTEEAMVTDVIYACQGVDGKYVKFDEESDGYVLLDSIRVSRASSSMVYKLCELGVLFKRVVGFIEMSLGRSPVEDVGTVGQAFCAALQDELSDYYKLLAVLEAQSSNPIPLLSEGVSSGNYLSLRRLAVWLAEPMVKMRLMADLVEKCRVLRGGAMAGAIHLHARHGDPMVHEFMKRLLQRVCSPLFEMVKRWVLEGELEDIFVEFFIVGQPVKAESLWREGYRLYDAMLPSFISASLAQRILRTGKSINFLRVCCEDRGWARAATEDTGAMARRGGFGYGETDTLESLVDEASKRIDKHLLDVIYERYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGPELSVPANTISSFKLAGLLETAIRASNAQYDDPDILDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMTRYLRIFNFLWKLKRVEHALIGAWKTMKPNCITSNTFNRLQHAVKMQLVSALRRCQVLWVEINHFISNLQYYIMFEVLEISWSNFLSEMEVAKDLDDLLAAHEKYMNSIVEKSLLGELSQSLYKSLIVIFDLILRFRSHADILYEGIHELQARITESSLSSRDQKKTRKRLTDKSSEEESWIADGRKALTKRAGEFLQKMEQDLDAISKEYSSLQEDFISQLPVQQHVDLKFLFFRLDFNEFYRRVVS*