Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267840 | XP_003609734.2 | 81.098 | 164 | 17 | 2 | 86 | 235 | 226 | 389 | 8.32e-86 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267840 | sp|Q9FJ06|TBL4_ARATH | 46.316 | 190 | 80 | 6 | 62 | 235 | 192 | 375 | 1.71e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267840 | G7JMR6 | 81.098 | 164 | 17 | 2 | 86 | 235 | 226 | 389 | 3.98e-86 | 272 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0267840 | Msa1368590 | 0.807400 | 5.150492e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267840 | MtrunA17_Chr4g0068111 | 81.098 | 164 | 17 | 2 | 86 | 235 | 226 | 389 | 7.66e-90 | 272 |
| Msa0267840 | MtrunA17_Chr7g0258851 | 45.198 | 177 | 81 | 4 | 72 | 235 | 348 | 521 | 3.25e-45 | 159 |
| Msa0267840 | MtrunA17_Chr1g0175671 | 39.013 | 223 | 102 | 6 | 44 | 235 | 224 | 443 | 1.28e-44 | 156 |
| Msa0267840 | MtrunA17_Chr8g0368461 | 47.771 | 157 | 67 | 2 | 92 | 235 | 308 | 462 | 3.30e-43 | 152 |
| Msa0267840 | MtrunA17_Chr1g0213281 | 41.081 | 185 | 92 | 4 | 65 | 235 | 268 | 449 | 4.84e-43 | 152 |
| Msa0267840 | MtrunA17_Chr5g0413271 | 45.570 | 158 | 71 | 2 | 91 | 235 | 255 | 410 | 1.86e-40 | 144 |
| Msa0267840 | MtrunA17_Chr4g0071391 | 39.490 | 157 | 81 | 2 | 92 | 235 | 227 | 382 | 7.03e-34 | 126 |
| Msa0267840 | MtrunA17_Chr1g0150371 | 92.727 | 55 | 3 | 1 | 38 | 92 | 61 | 114 | 1.98e-28 | 105 |
| Msa0267840 | MtrunA17_Chr7g0269991 | 36.667 | 180 | 97 | 4 | 69 | 235 | 233 | 408 | 8.36e-28 | 110 |
| Msa0267840 | MtrunA17_Chr3g0105301 | 31.098 | 164 | 86 | 3 | 93 | 235 | 155 | 312 | 2.89e-19 | 85.5 |
| Msa0267840 | MtrunA17_Chr2g0287901 | 29.412 | 153 | 92 | 3 | 76 | 214 | 200 | 350 | 1.83e-16 | 77.8 |
| Msa0267840 | MtrunA17_Chr7g0259711 | 29.412 | 153 | 92 | 3 | 76 | 214 | 194 | 344 | 2.20e-16 | 77.8 |
| Msa0267840 | MtrunA17_Chr4g0045951 | 27.184 | 206 | 115 | 6 | 56 | 235 | 110 | 306 | 5.08e-16 | 76.3 |
| Msa0267840 | MtrunA17_Chr4g0045941 | 26.220 | 164 | 96 | 4 | 88 | 235 | 140 | 294 | 6.96e-15 | 72.8 |
| Msa0267840 | MtrunA17_Chr1g0171171 | 25.000 | 152 | 100 | 2 | 93 | 235 | 164 | 310 | 1.93e-14 | 71.6 |
| Msa0267840 | MtrunA17_Chr2g0283581 | 24.375 | 160 | 96 | 4 | 92 | 235 | 152 | 302 | 2.31e-14 | 71.2 |
| Msa0267840 | MtrunA17_Chr3g0126021 | 34.286 | 105 | 69 | 0 | 94 | 198 | 253 | 357 | 3.89e-14 | 71.2 |
| Msa0267840 | MtrunA17_Chr5g0430371 | 32.075 | 106 | 66 | 1 | 93 | 198 | 170 | 269 | 4.03e-14 | 70.9 |
| Msa0267840 | MtrunA17_Chr2g0314801 | 30.233 | 129 | 74 | 3 | 122 | 235 | 169 | 296 | 2.07e-13 | 68.6 |
| Msa0267840 | MtrunA17_Chr1g0210771 | 26.974 | 152 | 96 | 3 | 93 | 235 | 170 | 315 | 2.09e-13 | 68.6 |
| Msa0267840 | MtrunA17_Chr8g0384151 | 32.075 | 106 | 72 | 0 | 93 | 198 | 209 | 314 | 5.56e-13 | 67.8 |
| Msa0267840 | MtrunA17_Chr2g0314791 | 31.429 | 140 | 81 | 4 | 93 | 225 | 148 | 279 | 7.03e-13 | 67.0 |
| Msa0267840 | MtrunA17_Chr4g0005491 | 27.751 | 209 | 117 | 9 | 52 | 235 | 137 | 336 | 4.60e-12 | 64.7 |
| Msa0267840 | MtrunA17_Chr2g0325481 | 27.848 | 158 | 93 | 4 | 92 | 235 | 161 | 311 | 8.40e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267840 | AT5G49340.1 | 46.316 | 190 | 80 | 6 | 62 | 235 | 192 | 375 | 1.74e-46 | 160 |
| Msa0267840 | AT3G12060.1 | 45.223 | 157 | 72 | 2 | 92 | 235 | 314 | 469 | 3.31e-44 | 156 |
| Msa0267840 | AT5G06700.1 | 44.586 | 157 | 73 | 2 | 92 | 235 | 373 | 528 | 3.73e-43 | 154 |
| Msa0267840 | AT1G60790.1 | 47.771 | 157 | 68 | 2 | 92 | 235 | 310 | 465 | 7.08e-41 | 147 |
| Msa0267840 | AT5G20590.1 | 38.217 | 157 | 83 | 2 | 92 | 235 | 260 | 415 | 1.90e-34 | 129 |
| Msa0267840 | AT3G62390.1 | 37.179 | 156 | 82 | 3 | 93 | 235 | 257 | 409 | 3.03e-30 | 117 |
| Msa0267840 | AT5G20590.2 | 40.952 | 105 | 61 | 1 | 92 | 196 | 260 | 363 | 1.36e-24 | 100 |
| Msa0267840 | AT3G62390.2 | 40.566 | 106 | 61 | 1 | 93 | 198 | 257 | 360 | 1.04e-23 | 98.6 |
| Msa0267840 | AT5G19160.1 | 32.386 | 176 | 100 | 4 | 62 | 223 | 191 | 361 | 1.91e-23 | 98.2 |
| Msa0267840 | AT5G19160.2 | 34.783 | 138 | 84 | 3 | 62 | 198 | 191 | 323 | 2.12e-21 | 91.7 |
| Msa0267840 | AT5G58600.1 | 31.765 | 170 | 83 | 5 | 70 | 220 | 163 | 318 | 3.79e-21 | 91.3 |
| Msa0267840 | AT3G06080.2 | 29.101 | 189 | 114 | 5 | 62 | 235 | 195 | 378 | 1.68e-19 | 87.0 |
| Msa0267840 | AT5G58600.2 | 33.846 | 130 | 71 | 3 | 70 | 198 | 163 | 278 | 2.83e-19 | 84.7 |
| Msa0267840 | AT3G06080.1 | 31.884 | 138 | 88 | 3 | 62 | 198 | 195 | 327 | 1.34e-17 | 80.9 |
| Msa0267840 | AT3G11570.1 | 26.974 | 152 | 98 | 1 | 97 | 235 | 205 | 356 | 1.42e-16 | 78.6 |
| Msa0267840 | AT1G29050.1 | 26.250 | 160 | 94 | 4 | 92 | 235 | 172 | 323 | 1.78e-15 | 75.1 |
| Msa0267840 | AT1G78710.1 | 28.641 | 206 | 113 | 8 | 56 | 235 | 102 | 299 | 6.52e-15 | 73.6 |
| Msa0267840 | AT1G48880.1 | 28.750 | 160 | 101 | 2 | 39 | 198 | 193 | 339 | 1.59e-14 | 72.8 |
| Msa0267840 | AT5G06230.1 | 27.044 | 159 | 102 | 2 | 76 | 221 | 171 | 328 | 4.79e-14 | 71.2 |
| Msa0267840 | AT5G06230.2 | 27.044 | 159 | 102 | 2 | 76 | 221 | 130 | 287 | 5.46e-14 | 70.9 |
| Msa0267840 | AT2G31110.2 | 25.625 | 160 | 94 | 4 | 92 | 235 | 156 | 306 | 1.84e-13 | 69.3 |
| Msa0267840 | AT2G31110.1 | 24.845 | 161 | 96 | 4 | 91 | 235 | 7 | 158 | 2.33e-13 | 67.4 |
| Msa0267840 | AT2G30900.1 | 29.268 | 164 | 81 | 5 | 94 | 235 | 158 | 308 | 9.16e-12 | 64.3 |
| Msa0267840 | AT3G54260.1 | 24.812 | 133 | 89 | 3 | 93 | 219 | 162 | 289 | 2.31e-11 | 63.2 |
| Msa0267840 | AT2G30010.1 | 29.060 | 117 | 75 | 3 | 84 | 198 | 160 | 270 | 7.99e-11 | 61.6 |
| Msa0267840 | AT5G06230.3 | 27.731 | 119 | 85 | 1 | 76 | 194 | 171 | 288 | 8.10e-11 | 61.2 |
| Msa0267840 | AT2G30010.2 | 29.060 | 117 | 75 | 3 | 84 | 198 | 203 | 313 | 9.44e-11 | 61.6 |
Find 63 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATGTTAATTAGGATTA+TGG | 0.236100 | 2_2:-69666882 | Msa0267840:intron |
| TTCCATTCTTGTACAAGAAA+TGG | 0.283805 | 2_2:+69666834 | None:intergenic |
| AGCTTGAAGCTTTGCGTTGC+TGG | 0.291568 | 2_2:+69668782 | None:intergenic |
| ACCTAACATACTTCCTATAA+TGG | 0.306753 | 2_2:+69666219 | None:intergenic |
| GTGCAGGATTTGATTGATAA+AGG | 0.344148 | 2_2:-69667697 | Msa0267840:intron |
| ATTAAATAAATTTAAATGCC+TGG | 0.349268 | 2_2:-69666022 | None:intergenic |
| CACTGCCCCTTCAGATTCAT+AGG | 0.352061 | 2_2:+69667960 | None:intergenic |
| TCCATTCTTGTACAAGAAAT+GGG | 0.352802 | 2_2:+69666835 | None:intergenic |
| TGGGGATTTCACAATGTCTA+TGG | 0.361987 | 2_2:+69666854 | None:intergenic |
| CCCCATTTCTTGTACAAGAA+TGG | 0.370184 | 2_2:-69666836 | Msa0267840:CDS |
| AGCAAATTGAACCTGAGATT+TGG | 0.376406 | 2_2:+69668322 | None:intergenic |
| AAGATAGCTTTCATTTGTAA+TGG | 0.380265 | 2_2:+69666294 | None:intergenic |
| TTCCTCAAAGAGAAACTCTT+AGG | 0.383679 | 2_2:-69666791 | Msa0267840:CDS |
| AGCCTAAGAGTTTCTCTTTG+AGG | 0.386378 | 2_2:+69666789 | None:intergenic |
| AGATAGCTTTCATTTGTAAT+GGG | 0.396515 | 2_2:+69666295 | None:intergenic |
| ATGGTCTCTTACTCTCTGAT+TGG | 0.401288 | 2_2:-69668667 | Msa0267840:intron |
| TCATCATCTTCACTAGTAAA+GGG | 0.406935 | 2_2:+69667613 | None:intergenic |
| CGCATTCACTAACTTCAAAC+AGG | 0.413377 | 2_2:-69667590 | Msa0267840:intron |
| ATATGTGTGTGATCCATTAT+AGG | 0.428230 | 2_2:-69666232 | Msa0267840:exon |
| TCGACAATTCCCATTGTCAA+TGG | 0.442380 | 2_2:+69666262 | None:intergenic |
| TTAAATAAATTTAAATGCCT+GGG | 0.454696 | 2_2:-69666021 | None:intergenic |
| GTCATCATCTTCACTAGTAA+AGG | 0.461764 | 2_2:+69667612 | None:intergenic |
| TGAGCTTCTTGCTGCTAAGC+AGG | 0.466569 | 2_2:-69667934 | Msa0267840:CDS |
| GAAGCTTTGCGTTGCTGGAA+GGG | 0.484454 | 2_2:+69668787 | None:intergenic |
| GAACGCTGGTGGAACGGCGG+TGG | 0.496006 | 2_2:+69668825 | None:intergenic |
| AAGGATGAGACAATATCAAT+CGG | 0.498917 | 2_2:-69666171 | Msa0267840:three_prime_UTR |
| CTACTGTTATGCCAAATCTC+AGG | 0.502528 | 2_2:-69668333 | Msa0267840:intron |
| TCCATTATAGGAAGTATGTT+AGG | 0.502786 | 2_2:-69666220 | Msa0267840:three_prime_UTR |
| TGAAGCTTTGCGTTGCTGGA+AGG | 0.503173 | 2_2:+69668786 | None:intergenic |
| CATTTAAGACATGGGCTAAG+TGG | 0.503496 | 2_2:-69666516 | Msa0267840:CDS |
| AGGATGAGACAATATCAATC+GGG | 0.514977 | 2_2:-69666170 | Msa0267840:three_prime_UTR |
| TAGAAATTTAGTGCAGCGTA+TGG | 0.518555 | 2_2:-69667653 | Msa0267840:CDS |
| AACTCTGGAGGTAAATGTGA+TGG | 0.519732 | 2_2:-69666328 | Msa0267840:CDS |
| GGCAAACCCTATGAATCTGA+AGG | 0.520434 | 2_2:-69667967 | Msa0267840:CDS |
| GGAAGTATGTTAGGTGGTGT+TGG | 0.525857 | 2_2:-69666211 | Msa0267840:three_prime_UTR |
| GCAGCATATCCATTGACAAT+GGG | 0.531435 | 2_2:-69666271 | Msa0267840:CDS |
| GTGGTCGAACGCTGGTGGAA+CGG | 0.545364 | 2_2:+69668819 | None:intergenic |
| ATTTAAGACATGGGCTAAGT+GGG | 0.550470 | 2_2:-69666515 | Msa0267840:CDS |
| GTAGAATTTGTTCAAACTCG+TGG | 0.551748 | 2_2:-69668708 | Msa0267840:five_prime_UTR |
| GAGCGGTGGTCGAACGCTGG+TGG | 0.557045 | 2_2:+69668814 | None:intergenic |
| ACTGCCCCTTCAGATTCATA+GGG | 0.561633 | 2_2:+69667961 | None:intergenic |
| ACTCTGGAGGTAAATGTGAT+GGG | 0.561757 | 2_2:-69666327 | Msa0267840:CDS |
| CAGCGTATGGAATCATCTGC+GGG | 0.564259 | 2_2:-69667640 | Msa0267840:CDS |
| CCATTCTTGTACAAGAAATG+GGG | 0.584992 | 2_2:+69666836 | None:intergenic |
| GATGAGCGGTGGTCGAACGC+TGG | 0.590929 | 2_2:+69668811 | None:intergenic |
| TACAACAAGCATTTAAGACA+TGG | 0.597685 | 2_2:-69666525 | Msa0267840:CDS |
| AGCATCATAATATTGAGACT+TGG | 0.603108 | 2_2:+69666749 | None:intergenic |
| TGCAGCATATCCATTGACAA+TGG | 0.605023 | 2_2:-69666272 | Msa0267840:CDS |
| CTGGTGGAACGGCGGTGGAG+CGG | 0.610995 | 2_2:+69668830 | None:intergenic |
| GCAAACCCTATGAATCTGAA+GGG | 0.614234 | 2_2:-69667966 | Msa0267840:CDS |
| ACAACAAGCATTTAAGACAT+GGG | 0.616597 | 2_2:-69666524 | Msa0267840:CDS |
| GTCGAACGCTGGTGGAACGG+CGG | 0.620672 | 2_2:+69668822 | None:intergenic |
| CATCATCTTCACTAGTAAAG+GGG | 0.629037 | 2_2:+69667614 | None:intergenic |
| AGTAGAAACTACTTTCAGCA+AGG | 0.629801 | 2_2:-69666586 | Msa0267840:CDS |
| CTCTGGAGGTAAATGTGATG+GGG | 0.640338 | 2_2:-69666326 | Msa0267840:CDS |
| GCTGGAAGGGAGATGAGCGG+TGG | 0.652228 | 2_2:+69668800 | None:intergenic |
| CGTGTGCTTGCTATCAACTG+TGG | 0.660073 | 2_2:+69666486 | None:intergenic |
| ATTATAGGAAGTATGTTAGG+TGG | 0.660255 | 2_2:-69666217 | Msa0267840:three_prime_UTR |
| GCAGCGTATGGAATCATCTG+CGG | 0.663468 | 2_2:-69667641 | Msa0267840:CDS |
| GGATGAGACAATATCAATCG+GGG | 0.688689 | 2_2:-69666169 | Msa0267840:three_prime_UTR |
| CAAACCCTATGAATCTGAAG+GGG | 0.696980 | 2_2:-69667965 | Msa0267840:CDS |
| GCTTCTTGCTGCTAAGCAGG+TGG | 0.701727 | 2_2:-69667931 | Msa0267840:intron |
| GTTGCTGGAAGGGAGATGAG+CGG | 0.756578 | 2_2:+69668797 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATCTAATTTGAGTTTT+AGG | - | chr2_2:69666405-69666424 | Msa0267840:intron | 15.0% |
| !!! | ACTTAGTAAAAATTGAATTT+TGG | - | chr2_2:69666492-69666511 | Msa0267840:CDS | 15.0% |
| !! | TTGAAATAAATTAAGTAACA+AGG | + | chr2_2:69666654-69666673 | None:intergenic | 15.0% |
| !! | GTTAACAAACAAAATTAAAT+AGG | + | chr2_2:69666702-69666721 | None:intergenic | 15.0% |
| !! | TTGTAATAATATACATATGT+TGG | - | chr2_2:69667150-69667169 | Msa0267840:intron | 15.0% |
| !! | ATTATTAATAAGTAGTTCAA+AGG | - | chr2_2:69668285-69668304 | Msa0267840:intron | 15.0% |
| !! | ATTAGATTAAACTCACAATT+AGG | + | chr2_2:69666396-69666415 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTTAGATTCTTA+CGG | - | chr2_2:69666421-69666440 | Msa0267840:intron | 20.0% |
| !!! | TAAAAATTGAATTTTGGAGA+AGG | - | chr2_2:69666498-69666517 | Msa0267840:CDS | 20.0% |
| !! | ATTCACGAATATTATAACAA+AGG | + | chr2_2:69666724-69666743 | None:intergenic | 20.0% |
| !! | AATTAAAAAGAGTGAAAAAG+GGG | + | chr2_2:69666888-69666907 | None:intergenic | 20.0% |
| !! | GAATTAAAAAGAGTGAAAAA+GGG | + | chr2_2:69666889-69666908 | None:intergenic | 20.0% |
| !! | TGAATTAAAAAGAGTGAAAA+AGG | + | chr2_2:69666890-69666909 | None:intergenic | 20.0% |
| !! | ATGTGCTTTATATTGAAATT+GGG | - | chr2_2:69666923-69666942 | Msa0267840:intron | 20.0% |
| !!! | ATTCTAGAAATGATATACAA+GGG | + | chr2_2:69667854-69667873 | None:intergenic | 20.0% |
| !!! | AATTCTAGAAATGATATACA+AGG | + | chr2_2:69667855-69667874 | None:intergenic | 20.0% |
| !! | AATCATGAAAAGACAAAAAA+TGG | - | chr2_2:69668228-69668247 | Msa0267840:intron | 20.0% |
| !! | ATCATGAAAAGACAAAAAAT+GGG | - | chr2_2:69668229-69668248 | Msa0267840:intron | 20.0% |
| !!! | TGAAATTTCAGTGTTTTTAA+AGG | - | chr2_2:69668820-69668839 | Msa0267840:five_prime_UTR | 20.0% |
| !! | TGATCTAATCTATGAGTTTT+AGG | - | chr2_2:69666305-69666324 | Msa0267840:CDS | 25.0% |
| ! | ATTAAAAAGAGTGAAAAAGG+GGG | + | chr2_2:69666887-69666906 | None:intergenic | 25.0% |
| ! | TTCAATATAAAGCACATCAA+AGG | + | chr2_2:69666920-69666939 | None:intergenic | 25.0% |
| ! | GATGTGCTTTATATTGAAAT+TGG | - | chr2_2:69666922-69666941 | Msa0267840:intron | 25.0% |
| !! | TGTTATACTTCAATGCATTT+TGG | - | chr2_2:69667027-69667046 | Msa0267840:intron | 25.0% |
| !! | TTATGTAGAATGGATTTGAA+TGG | - | chr2_2:69667058-69667077 | Msa0267840:intron | 25.0% |
| ! | TAATATAACAGTGACAATGT+CGG | - | chr2_2:69667082-69667101 | Msa0267840:intron | 25.0% |
| !! | TATACATATGTTGGTTGAAT+TGG | - | chr2_2:69667159-69667178 | Msa0267840:intron | 25.0% |
| !! | ATACATATGTTGGTTGAATT+GGG | - | chr2_2:69667160-69667179 | Msa0267840:intron | 25.0% |
| ! | AAGAACACACATTCAAATAT+AGG | + | chr2_2:69667409-69667428 | None:intergenic | 25.0% |
| ! | TTACATGAACAAAATCAAAG+AGG | + | chr2_2:69667511-69667530 | None:intergenic | 25.0% |
| ! | TTGTCAAATAGCAGTTATAT+CGG | - | chr2_2:69667638-69667657 | Msa0267840:CDS | 25.0% |
| !!! | TGCTAGTAGATTTTAACAAA+CGG | - | chr2_2:69667714-69667733 | Msa0267840:intron | 25.0% |
| ! | TACACTACTAGATTAAAGTT+AGG | - | chr2_2:69667770-69667789 | Msa0267840:intron | 25.0% |
| ! | AAACTACTATACTAACTTAC+AGG | + | chr2_2:69667900-69667919 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTGACTGTAATT+TGG | - | chr2_2:69667910-69667929 | Msa0267840:intron | 25.0% |
| ! | TGTGATGTTAATTAGGATTA+TGG | - | chr2_2:69668039-69668058 | Msa0267840:intron | 25.0% |
| !! | GATATAATCATTTTCAACAC+AGG | - | chr2_2:69668195-69668214 | Msa0267840:intron | 25.0% |
| ! | TAGTTAAGTAATTGCTTCTA+TGG | - | chr2_2:69668544-69668563 | Msa0267840:intron | 25.0% |
| ! | AGATAGCTTTCATTTGTAAT+GGG | + | chr2_2:69668629-69668648 | None:intergenic | 25.0% |
| ! | AAGATAGCTTTCATTTGTAA+TGG | + | chr2_2:69668630-69668649 | None:intergenic | 25.0% |
| ! | TATACTTCAATGCATTTTGG+TGG | - | chr2_2:69667030-69667049 | Msa0267840:intron | 30.0% |
| !! | ATACTTCAATGCATTTTGGT+GGG | - | chr2_2:69667031-69667050 | Msa0267840:intron | 30.0% |
| AATATAACAGTGACAATGTC+GGG | - | chr2_2:69667083-69667102 | Msa0267840:intron | 30.0% | |
| TTGAATTGGGAATAAGATCT+AGG | - | chr2_2:69667173-69667192 | Msa0267840:intron | 30.0% | |
| TCATCATCTTCACTAGTAAA+GGG | + | chr2_2:69667311-69667330 | None:intergenic | 30.0% | |
| !!! | TCTTTGATTTGCCTTTTTTG+TGG | - | chr2_2:69667425-69667444 | Msa0267840:intron | 30.0% |
| !!! | CTTTGATTTGCCTTTTTTGT+GGG | - | chr2_2:69667426-69667445 | Msa0267840:intron | 30.0% |
| ATGCATACATGAATGAGTAA+AGG | + | chr2_2:69667467-69667486 | None:intergenic | 30.0% | |
| AGATGCATTAGTTAGTCATA+AGG | - | chr2_2:69667546-69667565 | Msa0267840:intron | 30.0% | |
| GAAATGATATACAAGGGAAA+AGG | + | chr2_2:69667848-69667867 | None:intergenic | 30.0% | |
| TAGTTTGACTGTAATTTGGT+GGG | - | chr2_2:69667914-69667933 | Msa0267840:intron | 30.0% | |
| ! | TTTTGCTTGCATAAGGTTTA+AGG | - | chr2_2:69667992-69668011 | Msa0267840:intron | 30.0% |
| GATGTGTTGTGATGTTAATT+AGG | - | chr2_2:69668032-69668051 | Msa0267840:intron | 30.0% | |
| TCCATTCTTGTACAAGAAAT+GGG | + | chr2_2:69668089-69668108 | None:intergenic | 30.0% | |
| TTCCATTCTTGTACAAGAAA+TGG | + | chr2_2:69668090-69668109 | None:intergenic | 30.0% | |
| AGCATCATAATATTGAGACT+TGG | + | chr2_2:69668175-69668194 | None:intergenic | 30.0% | |
| ! | TACAACAAGCATTTAAGACA+TGG | - | chr2_2:69668396-69668415 | Msa0267840:intron | 30.0% |
| ! | ACAACAAGCATTTAAGACAT+GGG | - | chr2_2:69668397-69668416 | Msa0267840:intron | 30.0% |
| ATATGTGTGTGATCCATTAT+AGG | - | chr2_2:69668689-69668708 | Msa0267840:exon | 30.0% | |
| ! | TCCATTATAGGAAGTATGTT+AGG | - | chr2_2:69668701-69668720 | Msa0267840:five_prime_UTR | 30.0% |
| ACCTAACATACTTCCTATAA+TGG | + | chr2_2:69668705-69668724 | None:intergenic | 30.0% | |
| ! | ATTATAGGAAGTATGTTAGG+TGG | - | chr2_2:69668704-69668723 | Msa0267840:five_prime_UTR | 30.0% |
| AAGGATGAGACAATATCAAT+CGG | - | chr2_2:69668750-69668769 | Msa0267840:five_prime_UTR | 30.0% | |
| ! | GTAGAATTTGTTCAAACTCG+TGG | - | chr2_2:69666213-69666232 | Msa0267840:three_prime_UTR | 35.0% |
| ! | GTCTTTTAAGCTCGGATTTA+TGG | - | chr2_2:69666235-69666254 | Msa0267840:exon | 35.0% |
| ! | AGCTTTTCATTCGAGGAAAT+AGG | - | chr2_2:69666456-69666475 | Msa0267840:intron | 35.0% |
| AGCAAATTGAACCTGAGATT+TGG | + | chr2_2:69666602-69666621 | None:intergenic | 35.0% | |
| ! | TTTCTCTTTTCTCTTTCTCC+TGG | - | chr2_2:69666748-69666767 | Msa0267840:CDS | 35.0% |
| TATTGAAATTGGGTTTCTGC+AGG | - | chr2_2:69666933-69666952 | Msa0267840:intron | 35.0% | |
| ATATAACAGTGACAATGTCG+GGG | - | chr2_2:69667084-69667103 | Msa0267840:intron | 35.0% | |
| GTGCAGGATTTGATTGATAA+AGG | - | chr2_2:69667224-69667243 | Msa0267840:intron | 35.0% | |
| TAGAAATTTAGTGCAGCGTA+TGG | - | chr2_2:69667268-69667287 | Msa0267840:intron | 35.0% | |
| CATCATCTTCACTAGTAAAG+GGG | + | chr2_2:69667310-69667329 | None:intergenic | 35.0% | |
| GTCATCATCTTCACTAGTAA+AGG | + | chr2_2:69667312-69667331 | None:intergenic | 35.0% | |
| TAGTTAGTCATAAGGTCTGT+AGG | - | chr2_2:69667554-69667573 | Msa0267840:intron | 35.0% | |
| TCAATTCCTTCAATGAAGAG+AGG | - | chr2_2:69667589-69667608 | Msa0267840:intron | 35.0% | |
| AAATCACTATAGTGCTGTAG+TGG | - | chr2_2:69667686-69667705 | Msa0267840:CDS | 35.0% | |
| ! | TGTACCAGTGTTGTTAATCA+CGG | + | chr2_2:69667754-69667773 | None:intergenic | 35.0% |
| TGATATACAAGGGAAAAGGA+TGG | + | chr2_2:69667844-69667863 | None:intergenic | 35.0% | |
| GTAGTTTGACTGTAATTTGG+TGG | - | chr2_2:69667913-69667932 | Msa0267840:intron | 35.0% | |
| ! | ATAGAGCTTTTGCTTGCATA+AGG | - | chr2_2:69667985-69668004 | Msa0267840:intron | 35.0% |
| CCATTCTTGTACAAGAAATG+GGG | + | chr2_2:69668088-69668107 | None:intergenic | 35.0% | |
| TTCCTCAAAGAGAAACTCTT+AGG | - | chr2_2:69668130-69668149 | Msa0267840:intron | 35.0% | |
| ! | TCATTTTCAACACAGGATAC+TGG | - | chr2_2:69668202-69668221 | Msa0267840:intron | 35.0% |
| AGTAGAAACTACTTTCAGCA+AGG | - | chr2_2:69668335-69668354 | Msa0267840:CDS | 35.0% | |
| ! | ATTTAAGACATGGGCTAAGT+GGG | - | chr2_2:69668406-69668425 | Msa0267840:intron | 35.0% |
| !! | GGTGTAACAAACTTTTGAGA+AGG | - | chr2_2:69668731-69668750 | Msa0267840:five_prime_UTR | 35.0% |
| AGGATGAGACAATATCAATC+GGG | - | chr2_2:69668751-69668770 | Msa0267840:five_prime_UTR | 35.0% | |
| ! | AACTCGTGGTCTTTTAAGCT+CGG | - | chr2_2:69666227-69666246 | Msa0267840:exon | 40.0% |
| ATGGTCTCTTACTCTCTGAT+TGG | - | chr2_2:69666254-69666273 | Msa0267840:CDS | 40.0% | |
| CTACTGTTATGCCAAATCTC+AGG | - | chr2_2:69666588-69666607 | Msa0267840:intron | 40.0% | |
| ! | GGTTCAATTTGCTCCTAAAC+AGG | - | chr2_2:69666609-69666628 | Msa0267840:intron | 40.0% |
| ! | AGCTTGTTTGAAGCCTGTTT+AGG | + | chr2_2:69666625-69666644 | None:intergenic | 40.0% |
| AATATGAGCATCACAACACC+AGG | + | chr2_2:69666769-69666788 | None:intergenic | 40.0% | |
| GCAAACCCTATGAATCTGAA+GGG | - | chr2_2:69666955-69666974 | Msa0267840:intron | 40.0% | |
| CAAACCCTATGAATCTGAAG+GGG | - | chr2_2:69666956-69666975 | Msa0267840:intron | 40.0% | |
| ! | GGTGGGTTCTTTATGTAGAA+TGG | - | chr2_2:69667048-69667067 | Msa0267840:intron | 40.0% |
| ! | GTTTGCTTGTTGAATTGTGC+AGG | - | chr2_2:69667208-69667227 | Msa0267840:intron | 40.0% |
| CGCATTCACTAACTTCAAAC+AGG | - | chr2_2:69667331-69667350 | Msa0267840:intron | 40.0% | |
| !!! | TGATTTGCCTTTTTTGTGGG+TGG | - | chr2_2:69667429-69667448 | Msa0267840:intron | 40.0% |
| TGAAATGCCACCCACAAAAA+AGG | + | chr2_2:69667439-69667458 | None:intergenic | 40.0% | |
| AGGACATCACTAAGACATCA+TGG | + | chr2_2:69667808-69667827 | None:intergenic | 40.0% | |
| GTCTTAGTGATGTCCTTGTA+TGG | - | chr2_2:69667812-69667831 | Msa0267840:intron | 40.0% | |
| ACAGGTTTGTGTTAGGATGT+TGG | - | chr2_2:69667937-69667956 | Msa0267840:CDS | 40.0% | |
| GGATGTTGGATGTGTTTGTT+TGG | - | chr2_2:69667951-69667970 | Msa0267840:CDS | 40.0% | |
| TGGGGATTTCACAATGTCTA+TGG | + | chr2_2:69668070-69668089 | None:intergenic | 40.0% | |
| CCCCATTTCTTGTACAAGAA+TGG | - | chr2_2:69668085-69668104 | Msa0267840:intron | 40.0% | |
| AGCCTAAGAGTTTCTCTTTG+AGG | + | chr2_2:69668135-69668154 | None:intergenic | 40.0% | |
| ! | TTTTCAACACAGGATACTGG+TGG | - | chr2_2:69668205-69668224 | Msa0267840:intron | 40.0% |
| ! | CATTTAAGACATGGGCTAAG+TGG | - | chr2_2:69668405-69668424 | Msa0267840:intron | 40.0% |
| TCTATGGCTGAAATTTGCAG+AGG | - | chr2_2:69668560-69668579 | Msa0267840:intron | 40.0% | |
| CTATGGCTGAAATTTGCAGA+GGG | - | chr2_2:69668561-69668580 | Msa0267840:intron | 40.0% | |
| TATGGCTGAAATTTGCAGAG+GGG | - | chr2_2:69668562-69668581 | Msa0267840:intron | 40.0% | |
| ! | AACTCTGGAGGTAAATGTGA+TGG | - | chr2_2:69668593-69668612 | Msa0267840:intron | 40.0% |
| ! | ACTCTGGAGGTAAATGTGAT+GGG | - | chr2_2:69668594-69668613 | Msa0267840:intron | 40.0% |
| TGCAGCATATCCATTGACAA+TGG | - | chr2_2:69668649-69668668 | Msa0267840:intron | 40.0% | |
| GCAGCATATCCATTGACAAT+GGG | - | chr2_2:69668650-69668669 | Msa0267840:intron | 40.0% | |
| TCGACAATTCCCATTGTCAA+TGG | + | chr2_2:69668662-69668681 | None:intergenic | 40.0% | |
| GGATGAGACAATATCAATCG+GGG | - | chr2_2:69668752-69668771 | Msa0267840:five_prime_UTR | 40.0% | |
| ! | GATGACGAGCTTTTCATTCG+AGG | - | chr2_2:69666449-69666468 | Msa0267840:intron | 45.0% |
| GGCAAACCCTATGAATCTGA+AGG | - | chr2_2:69666954-69666973 | Msa0267840:intron | 45.0% | |
| ACTGCCCCTTCAGATTCATA+GGG | + | chr2_2:69666963-69666982 | None:intergenic | 45.0% | |
| GACAATGTCGGGGACTAATT+TGG | - | chr2_2:69667094-69667113 | Msa0267840:intron | 45.0% | |
| AATGTCGGGGACTAATTTGG+TGG | - | chr2_2:69667097-69667116 | Msa0267840:intron | 45.0% | |
| !! | TAAGGTCTGTAGGAGTGCTT+AGG | - | chr2_2:69667564-69667583 | Msa0267840:intron | 45.0% |
| !! | AAGGTCTGTAGGAGTGCTTA+GGG | - | chr2_2:69667565-69667584 | Msa0267840:intron | 45.0% |
| CACTCTCCTCTCTTCATTGA+AGG | + | chr2_2:69667598-69667617 | None:intergenic | 45.0% | |
| CTTCAATGAAGAGAGGAGAG+TGG | - | chr2_2:69667596-69667615 | Msa0267840:CDS | 45.0% | |
| ! | CCAGTGTTGTTAATCACGGA+TGG | + | chr2_2:69667750-69667769 | None:intergenic | 45.0% |
| CCATCCGTGATTAACAACAC+TGG | - | chr2_2:69667747-69667766 | Msa0267840:intron | 45.0% | |
| AGGATGGAAGACACCATACA+AGG | + | chr2_2:69667828-69667847 | None:intergenic | 45.0% | |
| ! | TGACTGTAATTTGGTGGGAC+AGG | - | chr2_2:69667919-69667938 | Msa0267840:intron | 45.0% |
| TGATAGCAAGCACACGTACA+AGG | - | chr2_2:69668442-69668461 | Msa0267840:intron | 45.0% | |
| GATAGCAAGCACACGTACAA+GGG | - | chr2_2:69668443-69668462 | Msa0267840:intron | 45.0% | |
| !! | CGTACAAGGGTCTTTTTCAC+TGG | - | chr2_2:69668456-69668475 | Msa0267840:intron | 45.0% |
| ATGGCTGAAATTTGCAGAGG+GGG | - | chr2_2:69668563-69668582 | Msa0267840:intron | 45.0% | |
| ! | CTCTGGAGGTAAATGTGATG+GGG | - | chr2_2:69668595-69668614 | Msa0267840:intron | 45.0% |
| ! | GGAAGTATGTTAGGTGGTGT+TGG | - | chr2_2:69668710-69668729 | Msa0267840:five_prime_UTR | 45.0% |
| GAAGCTTTGCGTTGCTGGAA+GGG | + | chr2_2:69666137-69666156 | None:intergenic | 50.0% | |
| TGAAGCTTTGCGTTGCTGGA+AGG | + | chr2_2:69666138-69666157 | None:intergenic | 50.0% | |
| AGCTTGAAGCTTTGCGTTGC+TGG | + | chr2_2:69666142-69666161 | None:intergenic | 50.0% | |
| CACTGCCCCTTCAGATTCAT+AGG | + | chr2_2:69666964-69666983 | None:intergenic | 50.0% | |
| TGAGCTTCTTGCTGCTAAGC+AGG | - | chr2_2:69666987-69667006 | Msa0267840:intron | 50.0% | |
| GCAGCGTATGGAATCATCTG+CGG | - | chr2_2:69667280-69667299 | Msa0267840:intron | 50.0% | |
| CAGCGTATGGAATCATCTGC+GGG | - | chr2_2:69667281-69667300 | Msa0267840:intron | 50.0% | |
| AGAGGAGAGTGGAGTTCAGA+TGG | - | chr2_2:69667607-69667626 | Msa0267840:CDS | 50.0% | |
| !! | ATATCGGCTCTGCAGTGTTG+TGG | - | chr2_2:69667654-69667673 | Msa0267840:CDS | 50.0% |
| TGGTGGGACAGGTTTGTGTT+AGG | - | chr2_2:69667930-69667949 | Msa0267840:intron | 50.0% | |
| !! | CGTGTGCTTGCTATCAACTG+TGG | + | chr2_2:69668438-69668457 | None:intergenic | 50.0% |
| TGGCTGAAATTTGCAGAGGG+GGG | - | chr2_2:69668564-69668583 | Msa0267840:intron | 50.0% | |
| GTTGCTGGAAGGGAGATGAG+CGG | + | chr2_2:69666127-69666146 | None:intergenic | 55.0% | |
| GCTTCTTGCTGCTAAGCAGG+TGG | - | chr2_2:69666990-69667009 | Msa0267840:intron | 55.0% | |
| TGAAATTTGCAGAGGGGGGC+AGG | - | chr2_2:69668568-69668587 | Msa0267840:intron | 55.0% | |
| GAAATTTGCAGAGGGGGGCA+GGG | - | chr2_2:69668569-69668588 | Msa0267840:intron | 55.0% | |
| AAATTTGCAGAGGGGGGCAG+GGG | - | chr2_2:69668570-69668589 | Msa0267840:intron | 55.0% | |
| GTGGTCGAACGCTGGTGGAA+CGG | + | chr2_2:69666105-69666124 | None:intergenic | 60.0% | |
| GTCGAACGCTGGTGGAACGG+CGG | + | chr2_2:69666102-69666121 | None:intergenic | 65.0% | |
| GATGAGCGGTGGTCGAACGC+TGG | + | chr2_2:69666113-69666132 | None:intergenic | 65.0% | |
| GCTGGAAGGGAGATGAGCGG+TGG | + | chr2_2:69666124-69666143 | None:intergenic | 65.0% | |
| CTGGTGGAACGGCGGTGGAG+CGG | + | chr2_2:69666094-69666113 | None:intergenic | 70.0% | |
| GAACGCTGGTGGAACGGCGG+TGG | + | chr2_2:69666099-69666118 | None:intergenic | 70.0% | |
| GAGCGGTGGTCGAACGCTGG+TGG | + | chr2_2:69666110-69666129 | None:intergenic | 70.0% | |
| AGAGGGGGGCAGGGGAACTC+TGG | - | chr2_2:69668578-69668597 | Msa0267840:intron | 70.0% | |
| GGGGGGCAGGGGAACTCTGG+AGG | - | chr2_2:69668581-69668600 | Msa0267840:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 69666023 | 69668920 | 69666023 | ID=Msa0267840;Name=Msa0267840 |
| chr2_2 | mRNA | 69666023 | 69668920 | 69666023 | ID=Msa0267840-mRNA-1;Parent=Msa0267840;Name=Msa0267840-mRNA-1;_AED=0.27;_eAED=0.27;_QI=231|0.42|0.62|0.87|0.57|0.62|8|220|237 |
| chr2_2 | exon | 69666023 | 69666363 | 69666023 | ID=Msa0267840-mRNA-1:exon:22228;Parent=Msa0267840-mRNA-1 |
| chr2_2 | exon | 69666487 | 69666606 | 69666487 | ID=Msa0267840-mRNA-1:exon:22227;Parent=Msa0267840-mRNA-1 |
| chr2_2 | exon | 69666693 | 69666889 | 69666693 | ID=Msa0267840-mRNA-1:exon:22226;Parent=Msa0267840-mRNA-1 |
| chr2_2 | exon | 69667591 | 69667713 | 69667591 | ID=Msa0267840-mRNA-1:exon:22225;Parent=Msa0267840-mRNA-1 |
| chr2_2 | exon | 69667932 | 69667988 | 69667932 | ID=Msa0267840-mRNA-1:exon:22224;Parent=Msa0267840-mRNA-1 |
| chr2_2 | exon | 69668334 | 69668356 | 69668334 | ID=Msa0267840-mRNA-1:exon:22223;Parent=Msa0267840-mRNA-1 |
| chr2_2 | exon | 69668466 | 69668516 | 69668466 | ID=Msa0267840-mRNA-1:exon:22222;Parent=Msa0267840-mRNA-1 |
| chr2_2 | exon | 69668668 | 69668920 | 69668668 | ID=Msa0267840-mRNA-1:exon:22221;Parent=Msa0267840-mRNA-1 |
| chr2_2 | five_prime_UTR | 69668690 | 69668920 | 69668690 | ID=Msa0267840-mRNA-1:five_prime_utr;Parent=Msa0267840-mRNA-1 |
| chr2_2 | CDS | 69668668 | 69668689 | 69668668 | ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1 |
| chr2_2 | CDS | 69668466 | 69668516 | 69668466 | ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1 |
| chr2_2 | CDS | 69668334 | 69668356 | 69668334 | ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1 |
| chr2_2 | CDS | 69667932 | 69667988 | 69667932 | ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1 |
| chr2_2 | CDS | 69667591 | 69667713 | 69667591 | ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1 |
| chr2_2 | CDS | 69666693 | 69666889 | 69666693 | ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1 |
| chr2_2 | CDS | 69666487 | 69666606 | 69666487 | ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1 |
| chr2_2 | CDS | 69666243 | 69666363 | 69666243 | ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1 |
| chr2_2 | three_prime_UTR | 69666023 | 69666242 | 69666023 | ID=Msa0267840-mRNA-1:three_prime_utr;Parent=Msa0267840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
