AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0267840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267840 MtrunA17_Chr4g0068111 81.098 164 17 2 86 235 226 389 7.66e-90 272
Msa0267840 MtrunA17_Chr7g0258851 45.198 177 81 4 72 235 348 521 3.25e-45 159
Msa0267840 MtrunA17_Chr1g0175671 39.013 223 102 6 44 235 224 443 1.28e-44 156
Msa0267840 MtrunA17_Chr8g0368461 47.771 157 67 2 92 235 308 462 3.30e-43 152
Msa0267840 MtrunA17_Chr1g0213281 41.081 185 92 4 65 235 268 449 4.84e-43 152
Msa0267840 MtrunA17_Chr5g0413271 45.570 158 71 2 91 235 255 410 1.86e-40 144
Msa0267840 MtrunA17_Chr4g0071391 39.490 157 81 2 92 235 227 382 7.03e-34 126
Msa0267840 MtrunA17_Chr1g0150371 92.727 55 3 1 38 92 61 114 1.98e-28 105
Msa0267840 MtrunA17_Chr7g0269991 36.667 180 97 4 69 235 233 408 8.36e-28 110
Msa0267840 MtrunA17_Chr3g0105301 31.098 164 86 3 93 235 155 312 2.89e-19 85.5
Msa0267840 MtrunA17_Chr2g0287901 29.412 153 92 3 76 214 200 350 1.83e-16 77.8
Msa0267840 MtrunA17_Chr7g0259711 29.412 153 92 3 76 214 194 344 2.20e-16 77.8
Msa0267840 MtrunA17_Chr4g0045951 27.184 206 115 6 56 235 110 306 5.08e-16 76.3
Msa0267840 MtrunA17_Chr4g0045941 26.220 164 96 4 88 235 140 294 6.96e-15 72.8
Msa0267840 MtrunA17_Chr1g0171171 25.000 152 100 2 93 235 164 310 1.93e-14 71.6
Msa0267840 MtrunA17_Chr2g0283581 24.375 160 96 4 92 235 152 302 2.31e-14 71.2
Msa0267840 MtrunA17_Chr3g0126021 34.286 105 69 0 94 198 253 357 3.89e-14 71.2
Msa0267840 MtrunA17_Chr5g0430371 32.075 106 66 1 93 198 170 269 4.03e-14 70.9
Msa0267840 MtrunA17_Chr2g0314801 30.233 129 74 3 122 235 169 296 2.07e-13 68.6
Msa0267840 MtrunA17_Chr1g0210771 26.974 152 96 3 93 235 170 315 2.09e-13 68.6
Msa0267840 MtrunA17_Chr8g0384151 32.075 106 72 0 93 198 209 314 5.56e-13 67.8
Msa0267840 MtrunA17_Chr2g0314791 31.429 140 81 4 93 225 148 279 7.03e-13 67.0
Msa0267840 MtrunA17_Chr4g0005491 27.751 209 117 9 52 235 137 336 4.60e-12 64.7
Msa0267840 MtrunA17_Chr2g0325481 27.848 158 93 4 92 235 161 311 8.40e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267840 AT5G49340.1 46.316 190 80 6 62 235 192 375 1.74e-46 160
Msa0267840 AT3G12060.1 45.223 157 72 2 92 235 314 469 3.31e-44 156
Msa0267840 AT5G06700.1 44.586 157 73 2 92 235 373 528 3.73e-43 154
Msa0267840 AT1G60790.1 47.771 157 68 2 92 235 310 465 7.08e-41 147
Msa0267840 AT5G20590.1 38.217 157 83 2 92 235 260 415 1.90e-34 129
Msa0267840 AT3G62390.1 37.179 156 82 3 93 235 257 409 3.03e-30 117
Msa0267840 AT5G20590.2 40.952 105 61 1 92 196 260 363 1.36e-24 100
Msa0267840 AT3G62390.2 40.566 106 61 1 93 198 257 360 1.04e-23 98.6
Msa0267840 AT5G19160.1 32.386 176 100 4 62 223 191 361 1.91e-23 98.2
Msa0267840 AT5G19160.2 34.783 138 84 3 62 198 191 323 2.12e-21 91.7
Msa0267840 AT5G58600.1 31.765 170 83 5 70 220 163 318 3.79e-21 91.3
Msa0267840 AT3G06080.2 29.101 189 114 5 62 235 195 378 1.68e-19 87.0
Msa0267840 AT5G58600.2 33.846 130 71 3 70 198 163 278 2.83e-19 84.7
Msa0267840 AT3G06080.1 31.884 138 88 3 62 198 195 327 1.34e-17 80.9
Msa0267840 AT3G11570.1 26.974 152 98 1 97 235 205 356 1.42e-16 78.6
Msa0267840 AT1G29050.1 26.250 160 94 4 92 235 172 323 1.78e-15 75.1
Msa0267840 AT1G78710.1 28.641 206 113 8 56 235 102 299 6.52e-15 73.6
Msa0267840 AT1G48880.1 28.750 160 101 2 39 198 193 339 1.59e-14 72.8
Msa0267840 AT5G06230.1 27.044 159 102 2 76 221 171 328 4.79e-14 71.2
Msa0267840 AT5G06230.2 27.044 159 102 2 76 221 130 287 5.46e-14 70.9
Msa0267840 AT2G31110.2 25.625 160 94 4 92 235 156 306 1.84e-13 69.3
Msa0267840 AT2G31110.1 24.845 161 96 4 91 235 7 158 2.33e-13 67.4
Msa0267840 AT2G30900.1 29.268 164 81 5 94 235 158 308 9.16e-12 64.3
Msa0267840 AT3G54260.1 24.812 133 89 3 93 219 162 289 2.31e-11 63.2
Msa0267840 AT2G30010.1 29.060 117 75 3 84 198 160 270 7.99e-11 61.6
Msa0267840 AT5G06230.3 27.731 119 85 1 76 194 171 288 8.10e-11 61.2
Msa0267840 AT2G30010.2 29.060 117 75 3 84 198 203 313 9.44e-11 61.6

Find 63 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGATGTTAATTAGGATTA+TGG 0.236100 2_2:-69666882 Msa0267840:intron
TTCCATTCTTGTACAAGAAA+TGG 0.283805 2_2:+69666834 None:intergenic
AGCTTGAAGCTTTGCGTTGC+TGG 0.291568 2_2:+69668782 None:intergenic
ACCTAACATACTTCCTATAA+TGG 0.306753 2_2:+69666219 None:intergenic
GTGCAGGATTTGATTGATAA+AGG 0.344148 2_2:-69667697 Msa0267840:intron
ATTAAATAAATTTAAATGCC+TGG 0.349268 2_2:-69666022 None:intergenic
CACTGCCCCTTCAGATTCAT+AGG 0.352061 2_2:+69667960 None:intergenic
TCCATTCTTGTACAAGAAAT+GGG 0.352802 2_2:+69666835 None:intergenic
TGGGGATTTCACAATGTCTA+TGG 0.361987 2_2:+69666854 None:intergenic
CCCCATTTCTTGTACAAGAA+TGG 0.370184 2_2:-69666836 Msa0267840:CDS
AGCAAATTGAACCTGAGATT+TGG 0.376406 2_2:+69668322 None:intergenic
AAGATAGCTTTCATTTGTAA+TGG 0.380265 2_2:+69666294 None:intergenic
TTCCTCAAAGAGAAACTCTT+AGG 0.383679 2_2:-69666791 Msa0267840:CDS
AGCCTAAGAGTTTCTCTTTG+AGG 0.386378 2_2:+69666789 None:intergenic
AGATAGCTTTCATTTGTAAT+GGG 0.396515 2_2:+69666295 None:intergenic
ATGGTCTCTTACTCTCTGAT+TGG 0.401288 2_2:-69668667 Msa0267840:intron
TCATCATCTTCACTAGTAAA+GGG 0.406935 2_2:+69667613 None:intergenic
CGCATTCACTAACTTCAAAC+AGG 0.413377 2_2:-69667590 Msa0267840:intron
ATATGTGTGTGATCCATTAT+AGG 0.428230 2_2:-69666232 Msa0267840:exon
TCGACAATTCCCATTGTCAA+TGG 0.442380 2_2:+69666262 None:intergenic
TTAAATAAATTTAAATGCCT+GGG 0.454696 2_2:-69666021 None:intergenic
GTCATCATCTTCACTAGTAA+AGG 0.461764 2_2:+69667612 None:intergenic
TGAGCTTCTTGCTGCTAAGC+AGG 0.466569 2_2:-69667934 Msa0267840:CDS
GAAGCTTTGCGTTGCTGGAA+GGG 0.484454 2_2:+69668787 None:intergenic
GAACGCTGGTGGAACGGCGG+TGG 0.496006 2_2:+69668825 None:intergenic
AAGGATGAGACAATATCAAT+CGG 0.498917 2_2:-69666171 Msa0267840:three_prime_UTR
CTACTGTTATGCCAAATCTC+AGG 0.502528 2_2:-69668333 Msa0267840:intron
TCCATTATAGGAAGTATGTT+AGG 0.502786 2_2:-69666220 Msa0267840:three_prime_UTR
TGAAGCTTTGCGTTGCTGGA+AGG 0.503173 2_2:+69668786 None:intergenic
CATTTAAGACATGGGCTAAG+TGG 0.503496 2_2:-69666516 Msa0267840:CDS
AGGATGAGACAATATCAATC+GGG 0.514977 2_2:-69666170 Msa0267840:three_prime_UTR
TAGAAATTTAGTGCAGCGTA+TGG 0.518555 2_2:-69667653 Msa0267840:CDS
AACTCTGGAGGTAAATGTGA+TGG 0.519732 2_2:-69666328 Msa0267840:CDS
GGCAAACCCTATGAATCTGA+AGG 0.520434 2_2:-69667967 Msa0267840:CDS
GGAAGTATGTTAGGTGGTGT+TGG 0.525857 2_2:-69666211 Msa0267840:three_prime_UTR
GCAGCATATCCATTGACAAT+GGG 0.531435 2_2:-69666271 Msa0267840:CDS
GTGGTCGAACGCTGGTGGAA+CGG 0.545364 2_2:+69668819 None:intergenic
ATTTAAGACATGGGCTAAGT+GGG 0.550470 2_2:-69666515 Msa0267840:CDS
GTAGAATTTGTTCAAACTCG+TGG 0.551748 2_2:-69668708 Msa0267840:five_prime_UTR
GAGCGGTGGTCGAACGCTGG+TGG 0.557045 2_2:+69668814 None:intergenic
ACTGCCCCTTCAGATTCATA+GGG 0.561633 2_2:+69667961 None:intergenic
ACTCTGGAGGTAAATGTGAT+GGG 0.561757 2_2:-69666327 Msa0267840:CDS
CAGCGTATGGAATCATCTGC+GGG 0.564259 2_2:-69667640 Msa0267840:CDS
CCATTCTTGTACAAGAAATG+GGG 0.584992 2_2:+69666836 None:intergenic
GATGAGCGGTGGTCGAACGC+TGG 0.590929 2_2:+69668811 None:intergenic
TACAACAAGCATTTAAGACA+TGG 0.597685 2_2:-69666525 Msa0267840:CDS
AGCATCATAATATTGAGACT+TGG 0.603108 2_2:+69666749 None:intergenic
TGCAGCATATCCATTGACAA+TGG 0.605023 2_2:-69666272 Msa0267840:CDS
CTGGTGGAACGGCGGTGGAG+CGG 0.610995 2_2:+69668830 None:intergenic
GCAAACCCTATGAATCTGAA+GGG 0.614234 2_2:-69667966 Msa0267840:CDS
ACAACAAGCATTTAAGACAT+GGG 0.616597 2_2:-69666524 Msa0267840:CDS
GTCGAACGCTGGTGGAACGG+CGG 0.620672 2_2:+69668822 None:intergenic
CATCATCTTCACTAGTAAAG+GGG 0.629037 2_2:+69667614 None:intergenic
AGTAGAAACTACTTTCAGCA+AGG 0.629801 2_2:-69666586 Msa0267840:CDS
CTCTGGAGGTAAATGTGATG+GGG 0.640338 2_2:-69666326 Msa0267840:CDS
GCTGGAAGGGAGATGAGCGG+TGG 0.652228 2_2:+69668800 None:intergenic
CGTGTGCTTGCTATCAACTG+TGG 0.660073 2_2:+69666486 None:intergenic
ATTATAGGAAGTATGTTAGG+TGG 0.660255 2_2:-69666217 Msa0267840:three_prime_UTR
GCAGCGTATGGAATCATCTG+CGG 0.663468 2_2:-69667641 Msa0267840:CDS
GGATGAGACAATATCAATCG+GGG 0.688689 2_2:-69666169 Msa0267840:three_prime_UTR
CAAACCCTATGAATCTGAAG+GGG 0.696980 2_2:-69667965 Msa0267840:CDS
GCTTCTTGCTGCTAAGCAGG+TGG 0.701727 2_2:-69667931 Msa0267840:intron
GTTGCTGGAAGGGAGATGAG+CGG 0.756578 2_2:+69668797 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATCTAATTTGAGTTTT+AGG - chr2_2:69666405-69666424 Msa0267840:intron 15.0%
!!! ACTTAGTAAAAATTGAATTT+TGG - chr2_2:69666492-69666511 Msa0267840:CDS 15.0%
!! TTGAAATAAATTAAGTAACA+AGG + chr2_2:69666654-69666673 None:intergenic 15.0%
!! GTTAACAAACAAAATTAAAT+AGG + chr2_2:69666702-69666721 None:intergenic 15.0%
!! TTGTAATAATATACATATGT+TGG - chr2_2:69667150-69667169 Msa0267840:intron 15.0%
!! ATTATTAATAAGTAGTTCAA+AGG - chr2_2:69668285-69668304 Msa0267840:intron 15.0%
!! ATTAGATTAAACTCACAATT+AGG + chr2_2:69666396-69666415 None:intergenic 20.0%
!!! TTTTAGGTTTTAGATTCTTA+CGG - chr2_2:69666421-69666440 Msa0267840:intron 20.0%
!!! TAAAAATTGAATTTTGGAGA+AGG - chr2_2:69666498-69666517 Msa0267840:CDS 20.0%
!! ATTCACGAATATTATAACAA+AGG + chr2_2:69666724-69666743 None:intergenic 20.0%
!! AATTAAAAAGAGTGAAAAAG+GGG + chr2_2:69666888-69666907 None:intergenic 20.0%
!! GAATTAAAAAGAGTGAAAAA+GGG + chr2_2:69666889-69666908 None:intergenic 20.0%
!! TGAATTAAAAAGAGTGAAAA+AGG + chr2_2:69666890-69666909 None:intergenic 20.0%
!! ATGTGCTTTATATTGAAATT+GGG - chr2_2:69666923-69666942 Msa0267840:intron 20.0%
!!! ATTCTAGAAATGATATACAA+GGG + chr2_2:69667854-69667873 None:intergenic 20.0%
!!! AATTCTAGAAATGATATACA+AGG + chr2_2:69667855-69667874 None:intergenic 20.0%
!! AATCATGAAAAGACAAAAAA+TGG - chr2_2:69668228-69668247 Msa0267840:intron 20.0%
!! ATCATGAAAAGACAAAAAAT+GGG - chr2_2:69668229-69668248 Msa0267840:intron 20.0%
!!! TGAAATTTCAGTGTTTTTAA+AGG - chr2_2:69668820-69668839 Msa0267840:five_prime_UTR 20.0%
!! TGATCTAATCTATGAGTTTT+AGG - chr2_2:69666305-69666324 Msa0267840:CDS 25.0%
! ATTAAAAAGAGTGAAAAAGG+GGG + chr2_2:69666887-69666906 None:intergenic 25.0%
! TTCAATATAAAGCACATCAA+AGG + chr2_2:69666920-69666939 None:intergenic 25.0%
! GATGTGCTTTATATTGAAAT+TGG - chr2_2:69666922-69666941 Msa0267840:intron 25.0%
!! TGTTATACTTCAATGCATTT+TGG - chr2_2:69667027-69667046 Msa0267840:intron 25.0%
!! TTATGTAGAATGGATTTGAA+TGG - chr2_2:69667058-69667077 Msa0267840:intron 25.0%
! TAATATAACAGTGACAATGT+CGG - chr2_2:69667082-69667101 Msa0267840:intron 25.0%
!! TATACATATGTTGGTTGAAT+TGG - chr2_2:69667159-69667178 Msa0267840:intron 25.0%
!! ATACATATGTTGGTTGAATT+GGG - chr2_2:69667160-69667179 Msa0267840:intron 25.0%
! AAGAACACACATTCAAATAT+AGG + chr2_2:69667409-69667428 None:intergenic 25.0%
! TTACATGAACAAAATCAAAG+AGG + chr2_2:69667511-69667530 None:intergenic 25.0%
! TTGTCAAATAGCAGTTATAT+CGG - chr2_2:69667638-69667657 Msa0267840:CDS 25.0%
!!! TGCTAGTAGATTTTAACAAA+CGG - chr2_2:69667714-69667733 Msa0267840:intron 25.0%
! TACACTACTAGATTAAAGTT+AGG - chr2_2:69667770-69667789 Msa0267840:intron 25.0%
! AAACTACTATACTAACTTAC+AGG + chr2_2:69667900-69667919 None:intergenic 25.0%
! ATAGTAGTTTGACTGTAATT+TGG - chr2_2:69667910-69667929 Msa0267840:intron 25.0%
! TGTGATGTTAATTAGGATTA+TGG - chr2_2:69668039-69668058 Msa0267840:intron 25.0%
!! GATATAATCATTTTCAACAC+AGG - chr2_2:69668195-69668214 Msa0267840:intron 25.0%
! TAGTTAAGTAATTGCTTCTA+TGG - chr2_2:69668544-69668563 Msa0267840:intron 25.0%
! AGATAGCTTTCATTTGTAAT+GGG + chr2_2:69668629-69668648 None:intergenic 25.0%
! AAGATAGCTTTCATTTGTAA+TGG + chr2_2:69668630-69668649 None:intergenic 25.0%
! TATACTTCAATGCATTTTGG+TGG - chr2_2:69667030-69667049 Msa0267840:intron 30.0%
!! ATACTTCAATGCATTTTGGT+GGG - chr2_2:69667031-69667050 Msa0267840:intron 30.0%
AATATAACAGTGACAATGTC+GGG - chr2_2:69667083-69667102 Msa0267840:intron 30.0%
TTGAATTGGGAATAAGATCT+AGG - chr2_2:69667173-69667192 Msa0267840:intron 30.0%
TCATCATCTTCACTAGTAAA+GGG + chr2_2:69667311-69667330 None:intergenic 30.0%
!!! TCTTTGATTTGCCTTTTTTG+TGG - chr2_2:69667425-69667444 Msa0267840:intron 30.0%
!!! CTTTGATTTGCCTTTTTTGT+GGG - chr2_2:69667426-69667445 Msa0267840:intron 30.0%
ATGCATACATGAATGAGTAA+AGG + chr2_2:69667467-69667486 None:intergenic 30.0%
AGATGCATTAGTTAGTCATA+AGG - chr2_2:69667546-69667565 Msa0267840:intron 30.0%
GAAATGATATACAAGGGAAA+AGG + chr2_2:69667848-69667867 None:intergenic 30.0%
TAGTTTGACTGTAATTTGGT+GGG - chr2_2:69667914-69667933 Msa0267840:intron 30.0%
! TTTTGCTTGCATAAGGTTTA+AGG - chr2_2:69667992-69668011 Msa0267840:intron 30.0%
GATGTGTTGTGATGTTAATT+AGG - chr2_2:69668032-69668051 Msa0267840:intron 30.0%
TCCATTCTTGTACAAGAAAT+GGG + chr2_2:69668089-69668108 None:intergenic 30.0%
TTCCATTCTTGTACAAGAAA+TGG + chr2_2:69668090-69668109 None:intergenic 30.0%
AGCATCATAATATTGAGACT+TGG + chr2_2:69668175-69668194 None:intergenic 30.0%
! TACAACAAGCATTTAAGACA+TGG - chr2_2:69668396-69668415 Msa0267840:intron 30.0%
! ACAACAAGCATTTAAGACAT+GGG - chr2_2:69668397-69668416 Msa0267840:intron 30.0%
ATATGTGTGTGATCCATTAT+AGG - chr2_2:69668689-69668708 Msa0267840:exon 30.0%
! TCCATTATAGGAAGTATGTT+AGG - chr2_2:69668701-69668720 Msa0267840:five_prime_UTR 30.0%
ACCTAACATACTTCCTATAA+TGG + chr2_2:69668705-69668724 None:intergenic 30.0%
! ATTATAGGAAGTATGTTAGG+TGG - chr2_2:69668704-69668723 Msa0267840:five_prime_UTR 30.0%
AAGGATGAGACAATATCAAT+CGG - chr2_2:69668750-69668769 Msa0267840:five_prime_UTR 30.0%
! GTAGAATTTGTTCAAACTCG+TGG - chr2_2:69666213-69666232 Msa0267840:three_prime_UTR 35.0%
! GTCTTTTAAGCTCGGATTTA+TGG - chr2_2:69666235-69666254 Msa0267840:exon 35.0%
! AGCTTTTCATTCGAGGAAAT+AGG - chr2_2:69666456-69666475 Msa0267840:intron 35.0%
AGCAAATTGAACCTGAGATT+TGG + chr2_2:69666602-69666621 None:intergenic 35.0%
! TTTCTCTTTTCTCTTTCTCC+TGG - chr2_2:69666748-69666767 Msa0267840:CDS 35.0%
TATTGAAATTGGGTTTCTGC+AGG - chr2_2:69666933-69666952 Msa0267840:intron 35.0%
ATATAACAGTGACAATGTCG+GGG - chr2_2:69667084-69667103 Msa0267840:intron 35.0%
GTGCAGGATTTGATTGATAA+AGG - chr2_2:69667224-69667243 Msa0267840:intron 35.0%
TAGAAATTTAGTGCAGCGTA+TGG - chr2_2:69667268-69667287 Msa0267840:intron 35.0%
CATCATCTTCACTAGTAAAG+GGG + chr2_2:69667310-69667329 None:intergenic 35.0%
GTCATCATCTTCACTAGTAA+AGG + chr2_2:69667312-69667331 None:intergenic 35.0%
TAGTTAGTCATAAGGTCTGT+AGG - chr2_2:69667554-69667573 Msa0267840:intron 35.0%
TCAATTCCTTCAATGAAGAG+AGG - chr2_2:69667589-69667608 Msa0267840:intron 35.0%
AAATCACTATAGTGCTGTAG+TGG - chr2_2:69667686-69667705 Msa0267840:CDS 35.0%
! TGTACCAGTGTTGTTAATCA+CGG + chr2_2:69667754-69667773 None:intergenic 35.0%
TGATATACAAGGGAAAAGGA+TGG + chr2_2:69667844-69667863 None:intergenic 35.0%
GTAGTTTGACTGTAATTTGG+TGG - chr2_2:69667913-69667932 Msa0267840:intron 35.0%
! ATAGAGCTTTTGCTTGCATA+AGG - chr2_2:69667985-69668004 Msa0267840:intron 35.0%
CCATTCTTGTACAAGAAATG+GGG + chr2_2:69668088-69668107 None:intergenic 35.0%
TTCCTCAAAGAGAAACTCTT+AGG - chr2_2:69668130-69668149 Msa0267840:intron 35.0%
! TCATTTTCAACACAGGATAC+TGG - chr2_2:69668202-69668221 Msa0267840:intron 35.0%
AGTAGAAACTACTTTCAGCA+AGG - chr2_2:69668335-69668354 Msa0267840:CDS 35.0%
! ATTTAAGACATGGGCTAAGT+GGG - chr2_2:69668406-69668425 Msa0267840:intron 35.0%
!! GGTGTAACAAACTTTTGAGA+AGG - chr2_2:69668731-69668750 Msa0267840:five_prime_UTR 35.0%
AGGATGAGACAATATCAATC+GGG - chr2_2:69668751-69668770 Msa0267840:five_prime_UTR 35.0%
! AACTCGTGGTCTTTTAAGCT+CGG - chr2_2:69666227-69666246 Msa0267840:exon 40.0%
ATGGTCTCTTACTCTCTGAT+TGG - chr2_2:69666254-69666273 Msa0267840:CDS 40.0%
CTACTGTTATGCCAAATCTC+AGG - chr2_2:69666588-69666607 Msa0267840:intron 40.0%
! GGTTCAATTTGCTCCTAAAC+AGG - chr2_2:69666609-69666628 Msa0267840:intron 40.0%
! AGCTTGTTTGAAGCCTGTTT+AGG + chr2_2:69666625-69666644 None:intergenic 40.0%
AATATGAGCATCACAACACC+AGG + chr2_2:69666769-69666788 None:intergenic 40.0%
GCAAACCCTATGAATCTGAA+GGG - chr2_2:69666955-69666974 Msa0267840:intron 40.0%
CAAACCCTATGAATCTGAAG+GGG - chr2_2:69666956-69666975 Msa0267840:intron 40.0%
! GGTGGGTTCTTTATGTAGAA+TGG - chr2_2:69667048-69667067 Msa0267840:intron 40.0%
! GTTTGCTTGTTGAATTGTGC+AGG - chr2_2:69667208-69667227 Msa0267840:intron 40.0%
CGCATTCACTAACTTCAAAC+AGG - chr2_2:69667331-69667350 Msa0267840:intron 40.0%
!!! TGATTTGCCTTTTTTGTGGG+TGG - chr2_2:69667429-69667448 Msa0267840:intron 40.0%
TGAAATGCCACCCACAAAAA+AGG + chr2_2:69667439-69667458 None:intergenic 40.0%
AGGACATCACTAAGACATCA+TGG + chr2_2:69667808-69667827 None:intergenic 40.0%
GTCTTAGTGATGTCCTTGTA+TGG - chr2_2:69667812-69667831 Msa0267840:intron 40.0%
ACAGGTTTGTGTTAGGATGT+TGG - chr2_2:69667937-69667956 Msa0267840:CDS 40.0%
GGATGTTGGATGTGTTTGTT+TGG - chr2_2:69667951-69667970 Msa0267840:CDS 40.0%
TGGGGATTTCACAATGTCTA+TGG + chr2_2:69668070-69668089 None:intergenic 40.0%
CCCCATTTCTTGTACAAGAA+TGG - chr2_2:69668085-69668104 Msa0267840:intron 40.0%
AGCCTAAGAGTTTCTCTTTG+AGG + chr2_2:69668135-69668154 None:intergenic 40.0%
! TTTTCAACACAGGATACTGG+TGG - chr2_2:69668205-69668224 Msa0267840:intron 40.0%
! CATTTAAGACATGGGCTAAG+TGG - chr2_2:69668405-69668424 Msa0267840:intron 40.0%
TCTATGGCTGAAATTTGCAG+AGG - chr2_2:69668560-69668579 Msa0267840:intron 40.0%
CTATGGCTGAAATTTGCAGA+GGG - chr2_2:69668561-69668580 Msa0267840:intron 40.0%
TATGGCTGAAATTTGCAGAG+GGG - chr2_2:69668562-69668581 Msa0267840:intron 40.0%
! AACTCTGGAGGTAAATGTGA+TGG - chr2_2:69668593-69668612 Msa0267840:intron 40.0%
! ACTCTGGAGGTAAATGTGAT+GGG - chr2_2:69668594-69668613 Msa0267840:intron 40.0%
TGCAGCATATCCATTGACAA+TGG - chr2_2:69668649-69668668 Msa0267840:intron 40.0%
GCAGCATATCCATTGACAAT+GGG - chr2_2:69668650-69668669 Msa0267840:intron 40.0%
TCGACAATTCCCATTGTCAA+TGG + chr2_2:69668662-69668681 None:intergenic 40.0%
GGATGAGACAATATCAATCG+GGG - chr2_2:69668752-69668771 Msa0267840:five_prime_UTR 40.0%
! GATGACGAGCTTTTCATTCG+AGG - chr2_2:69666449-69666468 Msa0267840:intron 45.0%
GGCAAACCCTATGAATCTGA+AGG - chr2_2:69666954-69666973 Msa0267840:intron 45.0%
ACTGCCCCTTCAGATTCATA+GGG + chr2_2:69666963-69666982 None:intergenic 45.0%
GACAATGTCGGGGACTAATT+TGG - chr2_2:69667094-69667113 Msa0267840:intron 45.0%
AATGTCGGGGACTAATTTGG+TGG - chr2_2:69667097-69667116 Msa0267840:intron 45.0%
!! TAAGGTCTGTAGGAGTGCTT+AGG - chr2_2:69667564-69667583 Msa0267840:intron 45.0%
!! AAGGTCTGTAGGAGTGCTTA+GGG - chr2_2:69667565-69667584 Msa0267840:intron 45.0%
CACTCTCCTCTCTTCATTGA+AGG + chr2_2:69667598-69667617 None:intergenic 45.0%
CTTCAATGAAGAGAGGAGAG+TGG - chr2_2:69667596-69667615 Msa0267840:CDS 45.0%
! CCAGTGTTGTTAATCACGGA+TGG + chr2_2:69667750-69667769 None:intergenic 45.0%
CCATCCGTGATTAACAACAC+TGG - chr2_2:69667747-69667766 Msa0267840:intron 45.0%
AGGATGGAAGACACCATACA+AGG + chr2_2:69667828-69667847 None:intergenic 45.0%
! TGACTGTAATTTGGTGGGAC+AGG - chr2_2:69667919-69667938 Msa0267840:intron 45.0%
TGATAGCAAGCACACGTACA+AGG - chr2_2:69668442-69668461 Msa0267840:intron 45.0%
GATAGCAAGCACACGTACAA+GGG - chr2_2:69668443-69668462 Msa0267840:intron 45.0%
!! CGTACAAGGGTCTTTTTCAC+TGG - chr2_2:69668456-69668475 Msa0267840:intron 45.0%
ATGGCTGAAATTTGCAGAGG+GGG - chr2_2:69668563-69668582 Msa0267840:intron 45.0%
! CTCTGGAGGTAAATGTGATG+GGG - chr2_2:69668595-69668614 Msa0267840:intron 45.0%
! GGAAGTATGTTAGGTGGTGT+TGG - chr2_2:69668710-69668729 Msa0267840:five_prime_UTR 45.0%
GAAGCTTTGCGTTGCTGGAA+GGG + chr2_2:69666137-69666156 None:intergenic 50.0%
TGAAGCTTTGCGTTGCTGGA+AGG + chr2_2:69666138-69666157 None:intergenic 50.0%
AGCTTGAAGCTTTGCGTTGC+TGG + chr2_2:69666142-69666161 None:intergenic 50.0%
CACTGCCCCTTCAGATTCAT+AGG + chr2_2:69666964-69666983 None:intergenic 50.0%
TGAGCTTCTTGCTGCTAAGC+AGG - chr2_2:69666987-69667006 Msa0267840:intron 50.0%
GCAGCGTATGGAATCATCTG+CGG - chr2_2:69667280-69667299 Msa0267840:intron 50.0%
CAGCGTATGGAATCATCTGC+GGG - chr2_2:69667281-69667300 Msa0267840:intron 50.0%
AGAGGAGAGTGGAGTTCAGA+TGG - chr2_2:69667607-69667626 Msa0267840:CDS 50.0%
!! ATATCGGCTCTGCAGTGTTG+TGG - chr2_2:69667654-69667673 Msa0267840:CDS 50.0%
TGGTGGGACAGGTTTGTGTT+AGG - chr2_2:69667930-69667949 Msa0267840:intron 50.0%
!! CGTGTGCTTGCTATCAACTG+TGG + chr2_2:69668438-69668457 None:intergenic 50.0%
TGGCTGAAATTTGCAGAGGG+GGG - chr2_2:69668564-69668583 Msa0267840:intron 50.0%
GTTGCTGGAAGGGAGATGAG+CGG + chr2_2:69666127-69666146 None:intergenic 55.0%
GCTTCTTGCTGCTAAGCAGG+TGG - chr2_2:69666990-69667009 Msa0267840:intron 55.0%
TGAAATTTGCAGAGGGGGGC+AGG - chr2_2:69668568-69668587 Msa0267840:intron 55.0%
GAAATTTGCAGAGGGGGGCA+GGG - chr2_2:69668569-69668588 Msa0267840:intron 55.0%
AAATTTGCAGAGGGGGGCAG+GGG - chr2_2:69668570-69668589 Msa0267840:intron 55.0%
GTGGTCGAACGCTGGTGGAA+CGG + chr2_2:69666105-69666124 None:intergenic 60.0%
GTCGAACGCTGGTGGAACGG+CGG + chr2_2:69666102-69666121 None:intergenic 65.0%
GATGAGCGGTGGTCGAACGC+TGG + chr2_2:69666113-69666132 None:intergenic 65.0%
GCTGGAAGGGAGATGAGCGG+TGG + chr2_2:69666124-69666143 None:intergenic 65.0%
CTGGTGGAACGGCGGTGGAG+CGG + chr2_2:69666094-69666113 None:intergenic 70.0%
GAACGCTGGTGGAACGGCGG+TGG + chr2_2:69666099-69666118 None:intergenic 70.0%
GAGCGGTGGTCGAACGCTGG+TGG + chr2_2:69666110-69666129 None:intergenic 70.0%
AGAGGGGGGCAGGGGAACTC+TGG - chr2_2:69668578-69668597 Msa0267840:intron 70.0%
GGGGGGCAGGGGAACTCTGG+AGG - chr2_2:69668581-69668600 Msa0267840:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 69666023 69668920 69666023 ID=Msa0267840;Name=Msa0267840
chr2_2 mRNA 69666023 69668920 69666023 ID=Msa0267840-mRNA-1;Parent=Msa0267840;Name=Msa0267840-mRNA-1;_AED=0.27;_eAED=0.27;_QI=231|0.42|0.62|0.87|0.57|0.62|8|220|237
chr2_2 exon 69666023 69666363 69666023 ID=Msa0267840-mRNA-1:exon:22228;Parent=Msa0267840-mRNA-1
chr2_2 exon 69666487 69666606 69666487 ID=Msa0267840-mRNA-1:exon:22227;Parent=Msa0267840-mRNA-1
chr2_2 exon 69666693 69666889 69666693 ID=Msa0267840-mRNA-1:exon:22226;Parent=Msa0267840-mRNA-1
chr2_2 exon 69667591 69667713 69667591 ID=Msa0267840-mRNA-1:exon:22225;Parent=Msa0267840-mRNA-1
chr2_2 exon 69667932 69667988 69667932 ID=Msa0267840-mRNA-1:exon:22224;Parent=Msa0267840-mRNA-1
chr2_2 exon 69668334 69668356 69668334 ID=Msa0267840-mRNA-1:exon:22223;Parent=Msa0267840-mRNA-1
chr2_2 exon 69668466 69668516 69668466 ID=Msa0267840-mRNA-1:exon:22222;Parent=Msa0267840-mRNA-1
chr2_2 exon 69668668 69668920 69668668 ID=Msa0267840-mRNA-1:exon:22221;Parent=Msa0267840-mRNA-1
chr2_2 five_prime_UTR 69668690 69668920 69668690 ID=Msa0267840-mRNA-1:five_prime_utr;Parent=Msa0267840-mRNA-1
chr2_2 CDS 69668668 69668689 69668668 ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1
chr2_2 CDS 69668466 69668516 69668466 ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1
chr2_2 CDS 69668334 69668356 69668334 ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1
chr2_2 CDS 69667932 69667988 69667932 ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1
chr2_2 CDS 69667591 69667713 69667591 ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1
chr2_2 CDS 69666693 69666889 69666693 ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1
chr2_2 CDS 69666487 69666606 69666487 ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1
chr2_2 CDS 69666243 69666363 69666243 ID=Msa0267840-mRNA-1:cds;Parent=Msa0267840-mRNA-1
chr2_2 three_prime_UTR 69666023 69666242 69666023 ID=Msa0267840-mRNA-1:three_prime_utr;Parent=Msa0267840-mRNA-1
Gene Sequence

>Msa0267840

ATGGTCTCTTACTCTCTGATTGGTTTTAGATTCTTACGGACGATGATGACGAGCTTTTCATTCGAGGAAATAGTCTACTGTTATGCCAAATCTCAGGCAAACCCTATGAATCTGAAGGGGCAGTGTCATGAGCTTCTTGCTGCTAAGCAGGTGGATTTGATTGATAAAGGTCAAACAGTTCTTGTTGAGAATAGAAATTTAGTGCAGCGTATGGAATCATCTGCGGGAATCCCCTTTACTAGTGAAGATGATGACGCATTCACTAACTTCAAACAGGATTATGGATGCTCCATAGACATTGTGAAATCCCCATTTCTTGTACAAGAATGGAAAGTGTCACGTAACGATGAAGTTCCTCAAAGAGAAACTCTTAGGCTTTATATGATTCAAGCTTCCAAGTCTCAATATTATGATGCTGATATAATCATTTTCAACACAGGATACTGGTGGAATCATGAAAAGACAAAAAATGGTAGAAACTACTTTCAGCAAGGTAATCATGTCTATGACAGATTAGAAGTTTCTGAAGCATTACAACAAGCATTTAAGACATGGGCTAAGTGGGTTGATTCCACAGTTGATAGCAAGCACACAGGGGGGCAGGGGAACTCTGGAGGTAAATGTGATGGGGAGAGACAACCCATTACAAATGAAAGCTATCTTGCAGCATATCCATTGACAATGGGAATTGTCGAAGATGTTATATGTGTGTGA

Protein sequence

>Msa0267840

MVSYSLIGFRFLRTMMTSFSFEEIVYCYAKSQANPMNLKGQCHELLAAKQVDLIDKGQTVLVENRNLVQRMESSAGIPFTSEDDDAFTNFKQDYGCSIDIVKSPFLVQEWKVSRNDEVPQRETLRLYMIQASKSQYYDADIIIFNTGYWWNHEKTKNGRNYFQQGNHVYDRLEVSEALQQAFKTWAKWVDSTVDSKHTGGQGNSGGKCDGERQPITNESYLAAYPLTMGIVEDVICV*