Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368590 | XP_003609734.2 | 81.098 | 164 | 17 | 2 | 72 | 221 | 226 | 389 | 7.96e-86 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368590 | sp|Q9FJ06|TBL4_ARATH | 50.299 | 167 | 67 | 4 | 70 | 221 | 210 | 375 | 1.36e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368590 | G7JMR6 | 81.098 | 164 | 17 | 2 | 72 | 221 | 226 | 389 | 3.80e-86 | 272 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0431880 | Msa1368590 | 0.927808 | 7.008387e-92 | -8.615850e-47 |
| Msa0267840 | Msa1368590 | 0.807400 | 5.150492e-50 | -8.615850e-47 |
| Msa0520750 | Msa1368590 | 0.891881 | 2.649928e-74 | -8.615850e-47 |
| Msa0893710 | Msa1368590 | 0.829807 | 4.186314e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368590 | MtrunA17_Chr4g0068111 | 81.098 | 164 | 17 | 2 | 72 | 221 | 226 | 389 | 7.32e-90 | 272 |
| Msa1368590 | MtrunA17_Chr7g0258851 | 47.134 | 157 | 69 | 2 | 78 | 221 | 366 | 521 | 3.62e-45 | 158 |
| Msa1368590 | MtrunA17_Chr1g0175671 | 39.013 | 223 | 102 | 6 | 30 | 221 | 224 | 443 | 2.52e-44 | 155 |
| Msa1368590 | MtrunA17_Chr8g0368461 | 47.771 | 157 | 67 | 2 | 78 | 221 | 308 | 462 | 3.22e-43 | 152 |
| Msa1368590 | MtrunA17_Chr1g0213281 | 41.081 | 185 | 92 | 4 | 51 | 221 | 268 | 449 | 1.61e-42 | 150 |
| Msa1368590 | MtrunA17_Chr5g0413271 | 45.570 | 158 | 71 | 2 | 77 | 221 | 255 | 410 | 1.19e-40 | 144 |
| Msa1368590 | MtrunA17_Chr4g0071391 | 39.490 | 157 | 81 | 2 | 78 | 221 | 227 | 382 | 4.91e-34 | 126 |
| Msa1368590 | MtrunA17_Chr1g0150371 | 94.545 | 55 | 2 | 1 | 24 | 78 | 61 | 114 | 3.34e-29 | 107 |
| Msa1368590 | MtrunA17_Chr7g0269991 | 39.103 | 156 | 79 | 3 | 79 | 221 | 256 | 408 | 8.10e-28 | 109 |
| Msa1368590 | MtrunA17_Chr3g0105301 | 31.098 | 164 | 86 | 3 | 79 | 221 | 155 | 312 | 3.19e-19 | 85.1 |
| Msa1368590 | MtrunA17_Chr2g0287901 | 28.947 | 152 | 94 | 2 | 62 | 200 | 200 | 350 | 1.71e-16 | 77.4 |
| Msa1368590 | MtrunA17_Chr7g0259711 | 29.412 | 153 | 92 | 3 | 62 | 200 | 194 | 344 | 1.94e-16 | 77.4 |
| Msa1368590 | MtrunA17_Chr4g0045951 | 27.184 | 206 | 115 | 6 | 42 | 221 | 110 | 306 | 2.74e-16 | 76.6 |
| Msa1368590 | MtrunA17_Chr4g0045941 | 26.220 | 164 | 96 | 4 | 74 | 221 | 140 | 294 | 6.71e-15 | 72.4 |
| Msa1368590 | MtrunA17_Chr1g0171171 | 24.528 | 159 | 106 | 2 | 72 | 221 | 157 | 310 | 1.72e-14 | 71.6 |
| Msa1368590 | MtrunA17_Chr3g0126021 | 34.286 | 105 | 69 | 0 | 80 | 184 | 253 | 357 | 2.71e-14 | 71.2 |
| Msa1368590 | MtrunA17_Chr2g0283581 | 27.215 | 158 | 94 | 5 | 78 | 221 | 152 | 302 | 2.92e-14 | 70.9 |
| Msa1368590 | MtrunA17_Chr5g0430371 | 32.075 | 106 | 66 | 1 | 79 | 184 | 170 | 269 | 3.49e-14 | 70.9 |
| Msa1368590 | MtrunA17_Chr1g0210771 | 26.974 | 152 | 96 | 3 | 79 | 221 | 170 | 315 | 1.51e-13 | 68.9 |
| Msa1368590 | MtrunA17_Chr2g0314801 | 30.233 | 129 | 74 | 3 | 108 | 221 | 169 | 296 | 2.04e-13 | 68.2 |
| Msa1368590 | MtrunA17_Chr8g0384151 | 32.075 | 106 | 72 | 0 | 79 | 184 | 209 | 314 | 4.01e-13 | 67.8 |
| Msa1368590 | MtrunA17_Chr2g0314791 | 31.429 | 140 | 81 | 4 | 79 | 211 | 148 | 279 | 7.32e-13 | 66.6 |
| Msa1368590 | MtrunA17_Chr4g0005491 | 27.053 | 207 | 121 | 8 | 38 | 221 | 137 | 336 | 2.95e-12 | 65.1 |
| Msa1368590 | MtrunA17_Chr2g0325481 | 27.848 | 158 | 93 | 4 | 78 | 221 | 161 | 311 | 6.03e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368590 | AT5G49340.1 | 50.299 | 167 | 67 | 4 | 70 | 221 | 210 | 375 | 1.38e-46 | 160 |
| Msa1368590 | AT3G12060.1 | 45.223 | 157 | 72 | 2 | 78 | 221 | 314 | 469 | 3.60e-44 | 155 |
| Msa1368590 | AT5G06700.1 | 44.586 | 157 | 73 | 2 | 78 | 221 | 373 | 528 | 3.34e-43 | 153 |
| Msa1368590 | AT1G60790.1 | 46.951 | 164 | 72 | 3 | 72 | 221 | 303 | 465 | 3.95e-41 | 147 |
| Msa1368590 | AT5G20590.1 | 38.217 | 157 | 83 | 2 | 78 | 221 | 260 | 415 | 1.71e-34 | 128 |
| Msa1368590 | AT3G62390.1 | 37.179 | 156 | 82 | 3 | 79 | 221 | 257 | 409 | 2.45e-30 | 117 |
| Msa1368590 | AT5G20590.2 | 40.952 | 105 | 61 | 1 | 78 | 182 | 260 | 363 | 1.10e-24 | 100 |
| Msa1368590 | AT3G62390.2 | 40.566 | 106 | 61 | 1 | 79 | 184 | 257 | 360 | 8.21e-24 | 98.6 |
| Msa1368590 | AT5G19160.1 | 32.386 | 176 | 100 | 4 | 48 | 209 | 191 | 361 | 1.47e-23 | 98.2 |
| Msa1368590 | AT5G19160.2 | 34.783 | 138 | 84 | 3 | 48 | 184 | 191 | 323 | 2.03e-21 | 91.3 |
| Msa1368590 | AT5G58600.1 | 31.765 | 170 | 83 | 5 | 56 | 206 | 163 | 318 | 3.27e-21 | 91.3 |
| Msa1368590 | AT3G06080.2 | 29.101 | 189 | 114 | 5 | 48 | 221 | 195 | 378 | 2.03e-19 | 86.3 |
| Msa1368590 | AT5G58600.2 | 33.846 | 130 | 71 | 3 | 56 | 184 | 163 | 278 | 2.79e-19 | 84.3 |
| Msa1368590 | AT3G06080.1 | 31.884 | 138 | 88 | 3 | 48 | 184 | 195 | 327 | 1.74e-17 | 80.1 |
| Msa1368590 | AT3G11570.1 | 26.974 | 152 | 98 | 1 | 83 | 221 | 205 | 356 | 1.42e-16 | 78.2 |
| Msa1368590 | AT1G29050.1 | 24.272 | 206 | 122 | 5 | 42 | 221 | 126 | 323 | 1.52e-15 | 75.1 |
| Msa1368590 | AT1G48880.1 | 28.750 | 160 | 101 | 2 | 25 | 184 | 193 | 339 | 5.17e-15 | 73.6 |
| Msa1368590 | AT1G78710.1 | 28.155 | 206 | 114 | 8 | 42 | 221 | 102 | 299 | 1.11e-14 | 72.4 |
| Msa1368590 | AT5G06230.1 | 27.044 | 159 | 102 | 2 | 62 | 207 | 171 | 328 | 4.06e-14 | 70.9 |
| Msa1368590 | AT5G06230.2 | 27.044 | 159 | 102 | 2 | 62 | 207 | 130 | 287 | 4.15e-14 | 70.9 |
| Msa1368590 | AT2G31110.2 | 25.625 | 160 | 94 | 4 | 78 | 221 | 156 | 306 | 1.87e-13 | 68.9 |
| Msa1368590 | AT2G31110.1 | 24.845 | 161 | 96 | 4 | 77 | 221 | 7 | 158 | 1.89e-13 | 67.4 |
| Msa1368590 | AT2G30900.1 | 29.268 | 164 | 81 | 5 | 80 | 221 | 158 | 308 | 8.73e-12 | 63.9 |
| Msa1368590 | AT3G54260.1 | 24.812 | 133 | 89 | 3 | 79 | 205 | 162 | 289 | 2.01e-11 | 63.2 |
| Msa1368590 | AT2G30010.1 | 29.060 | 117 | 75 | 3 | 70 | 184 | 160 | 270 | 5.15e-11 | 62.0 |
| Msa1368590 | AT2G30010.2 | 29.060 | 117 | 75 | 3 | 70 | 184 | 203 | 313 | 6.98e-11 | 61.6 |
| Msa1368590 | AT5G06230.3 | 27.731 | 119 | 85 | 1 | 62 | 180 | 171 | 288 | 8.36e-11 | 60.8 |
Find 63 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATGTTAATTAGGATTA+TGG | 0.236100 | tig0018650:-56567 | Msa1368590:intron |
| TTCCATTCTTGTACAAGAAA+TGG | 0.283805 | tig0018650:+56519 | None:intergenic |
| AGCTTGAAGCTTTGCGTTGC+TGG | 0.291568 | tig0018650:+58468 | None:intergenic |
| ACCTAACATACTTCCTATAA+TGG | 0.306753 | tig0018650:+55904 | None:intergenic |
| GTGCAGGATTTGATTGATAA+AGG | 0.344148 | tig0018650:-57382 | Msa1368590:intron |
| ATTAAATAAATTTAAATGCC+TGG | 0.346786 | tig0018650:-55707 | None:intergenic |
| CACTGCCCCTTCAGATTCAT+AGG | 0.352061 | tig0018650:+57646 | None:intergenic |
| TCCATTCTTGTACAAGAAAT+GGG | 0.352802 | tig0018650:+56520 | None:intergenic |
| TGGGGATTTCACAATGTCTA+TGG | 0.361987 | tig0018650:+56539 | None:intergenic |
| CCCCATTTCTTGTACAAGAA+TGG | 0.370184 | tig0018650:-56521 | Msa1368590:CDS |
| AGCAAATTGAACCTGAGATT+TGG | 0.376406 | tig0018650:+58008 | None:intergenic |
| AAGATAGCTTTCATTTGTAA+TGG | 0.380265 | tig0018650:+55979 | None:intergenic |
| TTCCTCAAAGAGAAACTCTT+AGG | 0.383679 | tig0018650:-56476 | Msa1368590:CDS |
| AGCCTAAGAGTTTCTCTTTG+AGG | 0.386378 | tig0018650:+56474 | None:intergenic |
| GTGGTCTCTTACTCTCTGAT+TGG | 0.386694 | tig0018650:-58353 | Msa1368590:intron |
| AGATAGCTTTCATTTGTAAT+GGG | 0.396515 | tig0018650:+55980 | None:intergenic |
| TCATCATCTTCACTAGTAAA+GGG | 0.406935 | tig0018650:+57298 | None:intergenic |
| CGCATTCACTAACTTCAAAC+AGG | 0.413377 | tig0018650:-57275 | Msa1368590:intron |
| ATATGTGTGTGATCCATTAT+AGG | 0.428230 | tig0018650:-55917 | Msa1368590:exon |
| TCGACAATTCCCATTGTCAA+TGG | 0.442380 | tig0018650:+55947 | None:intergenic |
| TTAAATAAATTTAAATGCCT+GGG | 0.445165 | tig0018650:-55706 | None:intergenic |
| GTCATCATCTTCACTAGTAA+AGG | 0.461764 | tig0018650:+57297 | None:intergenic |
| TGAGCTTCTTGCTGCTAAGC+AGG | 0.466569 | tig0018650:-57620 | Msa1368590:CDS |
| GAAGCTTTGCGTTGCTGGAA+GGG | 0.484454 | tig0018650:+58473 | None:intergenic |
| AGGATGAGACATTATCAATC+GGG | 0.489141 | tig0018650:-55855 | Msa1368590:three_prime_UTR |
| GAACGCTGGTGGAACGGCGG+TGG | 0.496006 | tig0018650:+58511 | None:intergenic |
| AAGGATGAGACATTATCAAT+CGG | 0.498917 | tig0018650:-55856 | Msa1368590:three_prime_UTR |
| CTACTGTTATGCCAAATCTC+AGG | 0.502528 | tig0018650:-58019 | Msa1368590:intron |
| TCCATTATAGGAAGTATGTT+AGG | 0.502786 | tig0018650:-55905 | Msa1368590:three_prime_UTR |
| TGAAGCTTTGCGTTGCTGGA+AGG | 0.503173 | tig0018650:+58472 | None:intergenic |
| CATTTAAGACATGGGCTAAG+TGG | 0.503496 | tig0018650:-56201 | Msa1368590:CDS |
| TAGAAATTTAGTGCAGCGTA+TGG | 0.518555 | tig0018650:-57338 | Msa1368590:CDS |
| AACTCTGGAGGTAAATGTGA+TGG | 0.519732 | tig0018650:-56013 | Msa1368590:CDS |
| GGCAAACCCTATGAATCTGA+AGG | 0.520434 | tig0018650:-57653 | Msa1368590:CDS |
| GGAAGTATGTTAGGTGGTGT+TGG | 0.525857 | tig0018650:-55896 | Msa1368590:three_prime_UTR |
| GCAGCATATCCATTGACAAT+GGG | 0.531435 | tig0018650:-55956 | Msa1368590:CDS |
| GTGGTCGAACGCTGGTGGAA+CGG | 0.545364 | tig0018650:+58505 | None:intergenic |
| ATTTAAGACATGGGCTAAGT+GGG | 0.550470 | tig0018650:-56200 | Msa1368590:CDS |
| GTAGAATTTGTTCAAACTCG+TGG | 0.551748 | tig0018650:-58394 | Msa1368590:five_prime_UTR |
| GAGCGGTGGTCGAACGCTGG+TGG | 0.557045 | tig0018650:+58500 | None:intergenic |
| ACTGCCCCTTCAGATTCATA+GGG | 0.561633 | tig0018650:+57647 | None:intergenic |
| ACTCTGGAGGTAAATGTGAT+GGG | 0.561757 | tig0018650:-56012 | Msa1368590:CDS |
| CCATTCTTGTACAAGAAATG+GGG | 0.584992 | tig0018650:+56521 | None:intergenic |
| GATGAGCGGTGGTCGAACGC+TGG | 0.590929 | tig0018650:+58497 | None:intergenic |
| TACAACAAGCATTTAAGACA+TGG | 0.597685 | tig0018650:-56210 | Msa1368590:CDS |
| AGCATCATAATATTGAGACT+TGG | 0.603108 | tig0018650:+56434 | None:intergenic |
| TGCAGCATATCCATTGACAA+TGG | 0.605023 | tig0018650:-55957 | Msa1368590:CDS |
| CTGGTGGAACGGCGGTGGAG+CGG | 0.610995 | tig0018650:+58516 | None:intergenic |
| CAGCGTATGGAATCATCTGT+GGG | 0.612923 | tig0018650:-57325 | Msa1368590:CDS |
| GCAAACCCTATGAATCTGAA+GGG | 0.614234 | tig0018650:-57652 | Msa1368590:CDS |
| ACAACAAGCATTTAAGACAT+GGG | 0.616597 | tig0018650:-56209 | Msa1368590:CDS |
| GCAGCGTATGGAATCATCTG+TGG | 0.620380 | tig0018650:-57326 | Msa1368590:CDS |
| GTCGAACGCTGGTGGAACGG+CGG | 0.620672 | tig0018650:+58508 | None:intergenic |
| CATCATCTTCACTAGTAAAG+GGG | 0.629037 | tig0018650:+57299 | None:intergenic |
| AGTAGAAACTACTTTCAGCA+AGG | 0.629801 | tig0018650:-56271 | Msa1368590:CDS |
| CTCTGGAGGTAAATGTGATG+GGG | 0.640338 | tig0018650:-56011 | Msa1368590:CDS |
| GGATGAGACATTATCAATCG+GGG | 0.648771 | tig0018650:-55854 | Msa1368590:three_prime_UTR |
| GCTGGAAGGGAGATGAGCGG+TGG | 0.652228 | tig0018650:+58486 | None:intergenic |
| CGTGTGCTTGCTATCAACTG+TGG | 0.660073 | tig0018650:+56171 | None:intergenic |
| ATTATAGGAAGTATGTTAGG+TGG | 0.660255 | tig0018650:-55902 | Msa1368590:three_prime_UTR |
| CAAACCCTATGAATCTGAAG+GGG | 0.696980 | tig0018650:-57651 | Msa1368590:CDS |
| GCTTCTTGCTGCTAAGCAGG+TGG | 0.701727 | tig0018650:-57617 | Msa1368590:intron |
| GTTGCTGGAAGGGAGATGAG+CGG | 0.756578 | tig0018650:+58483 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATCTAATTTGAGTTTT+AGG | - | tig0018650:56091-56110 | Msa1368590:intron | 15.0% |
| !!! | ACTTAGTAAAAATTGAATTT+TGG | - | tig0018650:56178-56197 | Msa1368590:CDS | 15.0% |
| !! | TTGAAATAAATTAAGTAACA+AGG | + | tig0018650:56340-56359 | None:intergenic | 15.0% |
| !! | GTTAACAAACAAAATTAAAT+AGG | + | tig0018650:56388-56407 | None:intergenic | 15.0% |
| !! | TTGTAATAATATACATATGT+TGG | - | tig0018650:56837-56856 | Msa1368590:intron | 15.0% |
| !! | ATTATTAATAAGTAGTTCAA+AGG | - | tig0018650:57972-57991 | Msa1368590:intron | 15.0% |
| !! | ATTAGATTAAACTCACAATT+AGG | + | tig0018650:56082-56101 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTTAGATTCTTA+CGG | - | tig0018650:56107-56126 | Msa1368590:intron | 20.0% |
| !!! | TAAAAATTGAATTTTGGAGA+AGG | - | tig0018650:56184-56203 | Msa1368590:CDS | 20.0% |
| !! | ATTCACGAATATTATAACAA+AGG | + | tig0018650:56410-56429 | None:intergenic | 20.0% |
| !! | AATTAAAAAGAGTGAAAAAG+GGG | + | tig0018650:56574-56593 | None:intergenic | 20.0% |
| !! | GAATTAAAAAGAGTGAAAAA+GGG | + | tig0018650:56575-56594 | None:intergenic | 20.0% |
| !! | TGAATTAAAAAGAGTGAAAA+AGG | + | tig0018650:56576-56595 | None:intergenic | 20.0% |
| !! | ATGTGCTTTATATTGAAATT+GGG | - | tig0018650:56609-56628 | Msa1368590:intron | 20.0% |
| !!! | ATTCTAGAAATGATATACAA+GGG | + | tig0018650:57541-57560 | None:intergenic | 20.0% |
| !!! | AATTCTAGAAATGATATACA+AGG | + | tig0018650:57542-57561 | None:intergenic | 20.0% |
| !! | AATCATGAAAAGACAAAAAA+TGG | - | tig0018650:57915-57934 | Msa1368590:intron | 20.0% |
| !! | ATCATGAAAAGACAAAAAAT+GGG | - | tig0018650:57916-57935 | Msa1368590:intron | 20.0% |
| !!! | TGAAATTTCAGTGTTTTTAA+AGG | - | tig0018650:58507-58526 | Msa1368590:five_prime_UTR | 20.0% |
| !! | TGATCTAATCTATGAGTTTT+AGG | - | tig0018650:55991-56010 | Msa1368590:CDS | 25.0% |
| ! | ATTAAAAAGAGTGAAAAAGG+GGG | + | tig0018650:56573-56592 | None:intergenic | 25.0% |
| ! | TTCAATATAAAGCACATCAA+AGG | + | tig0018650:56606-56625 | None:intergenic | 25.0% |
| ! | GATGTGCTTTATATTGAAAT+TGG | - | tig0018650:56608-56627 | Msa1368590:intron | 25.0% |
| !! | TGTTATACTTCAATGCATTT+TGG | - | tig0018650:56713-56732 | Msa1368590:intron | 25.0% |
| ! | TATGTAGAATTGGATTTGAA+TGG | - | tig0018650:56745-56764 | Msa1368590:intron | 25.0% |
| ! | TAATATAACAGTGACAATGT+CGG | - | tig0018650:56769-56788 | Msa1368590:intron | 25.0% |
| !! | TATACATATGTTGGTTGAAT+TGG | - | tig0018650:56846-56865 | Msa1368590:intron | 25.0% |
| !! | ATACATATGTTGGTTGAATT+GGG | - | tig0018650:56847-56866 | Msa1368590:intron | 25.0% |
| ! | AAGAACACACATTCAAATAT+AGG | + | tig0018650:57096-57115 | None:intergenic | 25.0% |
| ! | TTACATGAACAAAATCAAAG+AGG | + | tig0018650:57198-57217 | None:intergenic | 25.0% |
| ! | TTGTCAAATAGCAGTTATAT+CGG | - | tig0018650:57325-57344 | Msa1368590:CDS | 25.0% |
| !!! | TGCTAGTAGATTTTAACAAA+CGG | - | tig0018650:57401-57420 | Msa1368590:intron | 25.0% |
| ! | TACACTACTAGATTAAAGTT+AGG | - | tig0018650:57457-57476 | Msa1368590:intron | 25.0% |
| ! | AAACTACTATACTAACTTAC+AGG | + | tig0018650:57587-57606 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTGACTGTAATT+TGG | - | tig0018650:57597-57616 | Msa1368590:intron | 25.0% |
| ! | TGTGATGTTAATTAGGATTA+TGG | - | tig0018650:57726-57745 | Msa1368590:intron | 25.0% |
| !! | GATATAATCATTTTCAACAC+AGG | - | tig0018650:57882-57901 | Msa1368590:intron | 25.0% |
| ! | TAGTTAAGTAATTGCTTCTA+TGG | - | tig0018650:58231-58250 | Msa1368590:intron | 25.0% |
| ! | AGATAGCTTTCATTTGTAAT+GGG | + | tig0018650:58316-58335 | None:intergenic | 25.0% |
| ! | AAGATAGCTTTCATTTGTAA+TGG | + | tig0018650:58317-58336 | None:intergenic | 25.0% |
| ! | TATACTTCAATGCATTTTGG+TGG | - | tig0018650:56716-56735 | Msa1368590:intron | 30.0% |
| !! | ATACTTCAATGCATTTTGGT+GGG | - | tig0018650:56717-56736 | Msa1368590:intron | 30.0% |
| AATATAACAGTGACAATGTC+GGG | - | tig0018650:56770-56789 | Msa1368590:intron | 30.0% | |
| TTGAATTGGGAATAAGATCT+AGG | - | tig0018650:56860-56879 | Msa1368590:intron | 30.0% | |
| TCATCATCTTCACTAGTAAA+GGG | + | tig0018650:56998-57017 | None:intergenic | 30.0% | |
| !!! | TCTTTGATTTGCCTTTTTTG+TGG | - | tig0018650:57112-57131 | Msa1368590:intron | 30.0% |
| !!! | CTTTGATTTGCCTTTTTTGT+GGG | - | tig0018650:57113-57132 | Msa1368590:intron | 30.0% |
| ATGCATACATGAATGAGTAA+AGG | + | tig0018650:57154-57173 | None:intergenic | 30.0% | |
| AGATGCATTAGTTAGTCATA+AGG | - | tig0018650:57233-57252 | Msa1368590:intron | 30.0% | |
| GAAATGATATACAAGGGAAA+AGG | + | tig0018650:57535-57554 | None:intergenic | 30.0% | |
| TAGTTTGACTGTAATTTGGT+GGG | - | tig0018650:57601-57620 | Msa1368590:intron | 30.0% | |
| ! | TTTTGCTTGCATAAGGTTTA+AGG | - | tig0018650:57679-57698 | Msa1368590:intron | 30.0% |
| GATGTGTTGTGATGTTAATT+AGG | - | tig0018650:57719-57738 | Msa1368590:intron | 30.0% | |
| TCCATTCTTGTACAAGAAAT+GGG | + | tig0018650:57776-57795 | None:intergenic | 30.0% | |
| TTCCATTCTTGTACAAGAAA+TGG | + | tig0018650:57777-57796 | None:intergenic | 30.0% | |
| AGCATCATAATATTGAGACT+TGG | + | tig0018650:57862-57881 | None:intergenic | 30.0% | |
| ! | TACAACAAGCATTTAAGACA+TGG | - | tig0018650:58083-58102 | Msa1368590:intron | 30.0% |
| ! | ACAACAAGCATTTAAGACAT+GGG | - | tig0018650:58084-58103 | Msa1368590:intron | 30.0% |
| ATATGTGTGTGATCCATTAT+AGG | - | tig0018650:58376-58395 | Msa1368590:five_prime_UTR | 30.0% | |
| ! | TCCATTATAGGAAGTATGTT+AGG | - | tig0018650:58388-58407 | Msa1368590:five_prime_UTR | 30.0% |
| ACCTAACATACTTCCTATAA+TGG | + | tig0018650:58392-58411 | None:intergenic | 30.0% | |
| ! | ATTATAGGAAGTATGTTAGG+TGG | - | tig0018650:58391-58410 | Msa1368590:five_prime_UTR | 30.0% |
| AAGGATGAGACATTATCAAT+CGG | - | tig0018650:58437-58456 | Msa1368590:five_prime_UTR | 30.0% | |
| ! | GTAGAATTTGTTCAAACTCG+TGG | - | tig0018650:55899-55918 | Msa1368590:three_prime_UTR | 35.0% |
| ! | AGCTTTTCATTCGAGGAAAT+AGG | - | tig0018650:56142-56161 | Msa1368590:intron | 35.0% |
| AGCAAATTGAACCTGAGATT+TGG | + | tig0018650:56288-56307 | None:intergenic | 35.0% | |
| ! | TTTCTCTTTTCTCTTTCTCC+TGG | - | tig0018650:56434-56453 | Msa1368590:CDS | 35.0% |
| TATTGAAATTGGGTTTCTGC+AGG | - | tig0018650:56619-56638 | Msa1368590:intron | 35.0% | |
| GTGGGTTCTTTATGTAGAAT+TGG | - | tig0018650:56735-56754 | Msa1368590:intron | 35.0% | |
| ATATAACAGTGACAATGTCG+GGG | - | tig0018650:56771-56790 | Msa1368590:intron | 35.0% | |
| GTGCAGGATTTGATTGATAA+AGG | - | tig0018650:56911-56930 | Msa1368590:intron | 35.0% | |
| TAGAAATTTAGTGCAGCGTA+TGG | - | tig0018650:56955-56974 | Msa1368590:intron | 35.0% | |
| CATCATCTTCACTAGTAAAG+GGG | + | tig0018650:56997-57016 | None:intergenic | 35.0% | |
| GTCATCATCTTCACTAGTAA+AGG | + | tig0018650:56999-57018 | None:intergenic | 35.0% | |
| TAGTTAGTCATAAGGTCTGT+AGG | - | tig0018650:57241-57260 | Msa1368590:intron | 35.0% | |
| TCAATTCCTTCAATGAAGAG+AGG | - | tig0018650:57276-57295 | Msa1368590:CDS | 35.0% | |
| AAATCACTATAGTGCTGTAG+TGG | - | tig0018650:57373-57392 | Msa1368590:CDS | 35.0% | |
| ! | TGTACCAGTGTTGTTAATCA+CGG | + | tig0018650:57441-57460 | None:intergenic | 35.0% |
| TGATATACAAGGGAAAAGGA+TGG | + | tig0018650:57531-57550 | None:intergenic | 35.0% | |
| GTAGTTTGACTGTAATTTGG+TGG | - | tig0018650:57600-57619 | Msa1368590:intron | 35.0% | |
| ! | ATAGAGCTTTTGCTTGCATA+AGG | - | tig0018650:57672-57691 | Msa1368590:intron | 35.0% |
| CCATTCTTGTACAAGAAATG+GGG | + | tig0018650:57775-57794 | None:intergenic | 35.0% | |
| TTCCTCAAAGAGAAACTCTT+AGG | - | tig0018650:57817-57836 | Msa1368590:intron | 35.0% | |
| ! | TCATTTTCAACACAGGATAC+TGG | - | tig0018650:57889-57908 | Msa1368590:intron | 35.0% |
| AGTAGAAACTACTTTCAGCA+AGG | - | tig0018650:58022-58041 | Msa1368590:CDS | 35.0% | |
| ! | ATTTAAGACATGGGCTAAGT+GGG | - | tig0018650:58093-58112 | Msa1368590:intron | 35.0% |
| !! | GGTGTAACAAACTTTTGAGA+AGG | - | tig0018650:58418-58437 | Msa1368590:five_prime_UTR | 35.0% |
| AGGATGAGACATTATCAATC+GGG | - | tig0018650:58438-58457 | Msa1368590:five_prime_UTR | 35.0% | |
| ! | AACTCGTGGTCTTTTAAGCT+CGG | - | tig0018650:55913-55932 | Msa1368590:exon | 40.0% |
| ! | GTCTTTTAAGCTCGGATTTG+TGG | - | tig0018650:55921-55940 | Msa1368590:exon | 40.0% |
| CTACTGTTATGCCAAATCTC+AGG | - | tig0018650:56274-56293 | Msa1368590:intron | 40.0% | |
| ! | GGTTCAATTTGCTCCTAAAC+AGG | - | tig0018650:56295-56314 | Msa1368590:intron | 40.0% |
| ! | AGCTTGTTTGAAGCCTGTTT+AGG | + | tig0018650:56311-56330 | None:intergenic | 40.0% |
| AATATGAGCATCACAACACC+AGG | + | tig0018650:56455-56474 | None:intergenic | 40.0% | |
| GCAAACCCTATGAATCTGAA+GGG | - | tig0018650:56641-56660 | Msa1368590:intron | 40.0% | |
| CAAACCCTATGAATCTGAAG+GGG | - | tig0018650:56642-56661 | Msa1368590:intron | 40.0% | |
| ! | GTTTGCTTGTTGAATTGTGC+AGG | - | tig0018650:56895-56914 | Msa1368590:intron | 40.0% |
| CGCATTCACTAACTTCAAAC+AGG | - | tig0018650:57018-57037 | Msa1368590:intron | 40.0% | |
| !!! | TGATTTGCCTTTTTTGTGGG+TGG | - | tig0018650:57116-57135 | Msa1368590:intron | 40.0% |
| TGAAATGCCACCCACAAAAA+AGG | + | tig0018650:57126-57145 | None:intergenic | 40.0% | |
| AGGACATCACTAAGACATCA+TGG | + | tig0018650:57495-57514 | None:intergenic | 40.0% | |
| GTCTTAGTGATGTCCTTGTA+TGG | - | tig0018650:57499-57518 | Msa1368590:intron | 40.0% | |
| ACAGGTTTGTGTTAGGATGT+TGG | - | tig0018650:57624-57643 | Msa1368590:CDS | 40.0% | |
| GGATGTTGGATGTGTTTGTT+TGG | - | tig0018650:57638-57657 | Msa1368590:CDS | 40.0% | |
| TGGGGATTTCACAATGTCTA+TGG | + | tig0018650:57757-57776 | None:intergenic | 40.0% | |
| CCCCATTTCTTGTACAAGAA+TGG | - | tig0018650:57772-57791 | Msa1368590:intron | 40.0% | |
| AGCCTAAGAGTTTCTCTTTG+AGG | + | tig0018650:57822-57841 | None:intergenic | 40.0% | |
| ! | TTTTCAACACAGGATACTGG+TGG | - | tig0018650:57892-57911 | Msa1368590:intron | 40.0% |
| ! | CATTTAAGACATGGGCTAAG+TGG | - | tig0018650:58092-58111 | Msa1368590:intron | 40.0% |
| TCTATGGCTGAAATTTGCAG+AGG | - | tig0018650:58247-58266 | Msa1368590:intron | 40.0% | |
| CTATGGCTGAAATTTGCAGA+GGG | - | tig0018650:58248-58267 | Msa1368590:intron | 40.0% | |
| TATGGCTGAAATTTGCAGAG+GGG | - | tig0018650:58249-58268 | Msa1368590:intron | 40.0% | |
| ! | AACTCTGGAGGTAAATGTGA+TGG | - | tig0018650:58280-58299 | Msa1368590:intron | 40.0% |
| ! | ACTCTGGAGGTAAATGTGAT+GGG | - | tig0018650:58281-58300 | Msa1368590:intron | 40.0% |
| TGCAGCATATCCATTGACAA+TGG | - | tig0018650:58336-58355 | Msa1368590:intron | 40.0% | |
| GCAGCATATCCATTGACAAT+GGG | - | tig0018650:58337-58356 | Msa1368590:intron | 40.0% | |
| TCGACAATTCCCATTGTCAA+TGG | + | tig0018650:58349-58368 | None:intergenic | 40.0% | |
| GGATGAGACATTATCAATCG+GGG | - | tig0018650:58439-58458 | Msa1368590:five_prime_UTR | 40.0% | |
| GTGGTCTCTTACTCTCTGAT+TGG | - | tig0018650:55940-55959 | Msa1368590:CDS | 45.0% | |
| ! | GATGACGAGCTTTTCATTCG+AGG | - | tig0018650:56135-56154 | Msa1368590:intron | 45.0% |
| GGCAAACCCTATGAATCTGA+AGG | - | tig0018650:56640-56659 | Msa1368590:intron | 45.0% | |
| ACTGCCCCTTCAGATTCATA+GGG | + | tig0018650:56649-56668 | None:intergenic | 45.0% | |
| GACAATGTCGGGGACTAATT+TGG | - | tig0018650:56781-56800 | Msa1368590:intron | 45.0% | |
| AATGTCGGGGACTAATTTGG+TGG | - | tig0018650:56784-56803 | Msa1368590:intron | 45.0% | |
| CAGCGTATGGAATCATCTGT+GGG | - | tig0018650:56968-56987 | Msa1368590:intron | 45.0% | |
| !! | TAAGGTCTGTAGGAGTGCTT+AGG | - | tig0018650:57251-57270 | Msa1368590:intron | 45.0% |
| !! | AAGGTCTGTAGGAGTGCTTA+GGG | - | tig0018650:57252-57271 | Msa1368590:intron | 45.0% |
| CACTCTCCTCTCTTCATTGA+AGG | + | tig0018650:57285-57304 | None:intergenic | 45.0% | |
| CTTCAATGAAGAGAGGAGAG+TGG | - | tig0018650:57283-57302 | Msa1368590:CDS | 45.0% | |
| ! | CCAGTGTTGTTAATCACGGA+TGG | + | tig0018650:57437-57456 | None:intergenic | 45.0% |
| CCATCCGTGATTAACAACAC+TGG | - | tig0018650:57434-57453 | Msa1368590:intron | 45.0% | |
| AGGATGGAAGACACCATACA+AGG | + | tig0018650:57515-57534 | None:intergenic | 45.0% | |
| ! | TGACTGTAATTTGGTGGGAC+AGG | - | tig0018650:57606-57625 | Msa1368590:intron | 45.0% |
| TGATAGCAAGCACACGTACA+AGG | - | tig0018650:58129-58148 | Msa1368590:intron | 45.0% | |
| GATAGCAAGCACACGTACAA+GGG | - | tig0018650:58130-58149 | Msa1368590:intron | 45.0% | |
| !! | CGTACAAGGGTCTTTTTCAC+TGG | - | tig0018650:58143-58162 | Msa1368590:intron | 45.0% |
| ATGGCTGAAATTTGCAGAGG+GGG | - | tig0018650:58250-58269 | Msa1368590:intron | 45.0% | |
| ! | CTCTGGAGGTAAATGTGATG+GGG | - | tig0018650:58282-58301 | Msa1368590:intron | 45.0% |
| ! | GGAAGTATGTTAGGTGGTGT+TGG | - | tig0018650:58397-58416 | Msa1368590:five_prime_UTR | 45.0% |
| GAAGCTTTGCGTTGCTGGAA+GGG | + | tig0018650:55823-55842 | None:intergenic | 50.0% | |
| TGAAGCTTTGCGTTGCTGGA+AGG | + | tig0018650:55824-55843 | None:intergenic | 50.0% | |
| AGCTTGAAGCTTTGCGTTGC+TGG | + | tig0018650:55828-55847 | None:intergenic | 50.0% | |
| CACTGCCCCTTCAGATTCAT+AGG | + | tig0018650:56650-56669 | None:intergenic | 50.0% | |
| TGAGCTTCTTGCTGCTAAGC+AGG | - | tig0018650:56673-56692 | Msa1368590:intron | 50.0% | |
| GCAGCGTATGGAATCATCTG+TGG | - | tig0018650:56967-56986 | Msa1368590:intron | 50.0% | |
| AGAGGAGAGTGGAGTTCAGA+TGG | - | tig0018650:57294-57313 | Msa1368590:CDS | 50.0% | |
| !! | ATATCGGCTCTGCAGTGTTG+TGG | - | tig0018650:57341-57360 | Msa1368590:CDS | 50.0% |
| TGGTGGGACAGGTTTGTGTT+AGG | - | tig0018650:57617-57636 | Msa1368590:intron | 50.0% | |
| !! | CGTGTGCTTGCTATCAACTG+TGG | + | tig0018650:58125-58144 | None:intergenic | 50.0% |
| TGGCTGAAATTTGCAGAGGG+GGG | - | tig0018650:58251-58270 | Msa1368590:intron | 50.0% | |
| GTTGCTGGAAGGGAGATGAG+CGG | + | tig0018650:55813-55832 | None:intergenic | 55.0% | |
| GCTTCTTGCTGCTAAGCAGG+TGG | - | tig0018650:56676-56695 | Msa1368590:intron | 55.0% | |
| TGAAATTTGCAGAGGGGGGC+AGG | - | tig0018650:58255-58274 | Msa1368590:intron | 55.0% | |
| GAAATTTGCAGAGGGGGGCA+GGG | - | tig0018650:58256-58275 | Msa1368590:intron | 55.0% | |
| AAATTTGCAGAGGGGGGCAG+GGG | - | tig0018650:58257-58276 | Msa1368590:intron | 55.0% | |
| GTGGTCGAACGCTGGTGGAA+CGG | + | tig0018650:55791-55810 | None:intergenic | 60.0% | |
| GTCGAACGCTGGTGGAACGG+CGG | + | tig0018650:55788-55807 | None:intergenic | 65.0% | |
| GATGAGCGGTGGTCGAACGC+TGG | + | tig0018650:55799-55818 | None:intergenic | 65.0% | |
| GCTGGAAGGGAGATGAGCGG+TGG | + | tig0018650:55810-55829 | None:intergenic | 65.0% | |
| CTGGTGGAACGGCGGTGGAG+CGG | + | tig0018650:55780-55799 | None:intergenic | 70.0% | |
| GAACGCTGGTGGAACGGCGG+TGG | + | tig0018650:55785-55804 | None:intergenic | 70.0% | |
| GAGCGGTGGTCGAACGCTGG+TGG | + | tig0018650:55796-55815 | None:intergenic | 70.0% | |
| AGAGGGGGGCAGGGGAACTC+TGG | - | tig0018650:58265-58284 | Msa1368590:intron | 70.0% | |
| GGGGGGCAGGGGAACTCTGG+AGG | - | tig0018650:58268-58287 | Msa1368590:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018650 | gene | 55708 | 58607 | 55708 | ID=Msa1368590;Name=Msa1368590 |
| tig0018650 | mRNA | 55708 | 58607 | 55708 | ID=Msa1368590-mRNA-1;Parent=Msa1368590;Name=Msa1368590-mRNA-1;_AED=0.27;_eAED=0.27;_QI=274|0.42|0.62|0.87|0.57|0.62|8|220|223 |
| tig0018650 | exon | 55708 | 56048 | 55708 | ID=Msa1368590-mRNA-1:exon:550;Parent=Msa1368590-mRNA-1 |
| tig0018650 | exon | 56172 | 56291 | 56172 | ID=Msa1368590-mRNA-1:exon:549;Parent=Msa1368590-mRNA-1 |
| tig0018650 | exon | 56378 | 56574 | 56378 | ID=Msa1368590-mRNA-1:exon:548;Parent=Msa1368590-mRNA-1 |
| tig0018650 | exon | 57276 | 57398 | 57276 | ID=Msa1368590-mRNA-1:exon:547;Parent=Msa1368590-mRNA-1 |
| tig0018650 | exon | 57618 | 57674 | 57618 | ID=Msa1368590-mRNA-1:exon:546;Parent=Msa1368590-mRNA-1 |
| tig0018650 | exon | 58020 | 58042 | 58020 | ID=Msa1368590-mRNA-1:exon:545;Parent=Msa1368590-mRNA-1 |
| tig0018650 | exon | 58152 | 58202 | 58152 | ID=Msa1368590-mRNA-1:exon:544;Parent=Msa1368590-mRNA-1 |
| tig0018650 | exon | 58354 | 58607 | 58354 | ID=Msa1368590-mRNA-1:exon:543;Parent=Msa1368590-mRNA-1 |
| tig0018650 | five_prime_UTR | 58354 | 58607 | 58354 | ID=Msa1368590-mRNA-1:five_prime_utr;Parent=Msa1368590-mRNA-1 |
| tig0018650 | five_prime_UTR | 58183 | 58202 | 58183 | ID=Msa1368590-mRNA-1:five_prime_utr;Parent=Msa1368590-mRNA-1 |
| tig0018650 | CDS | 58152 | 58182 | 58152 | ID=Msa1368590-mRNA-1:cds;Parent=Msa1368590-mRNA-1 |
| tig0018650 | CDS | 58020 | 58042 | 58020 | ID=Msa1368590-mRNA-1:cds;Parent=Msa1368590-mRNA-1 |
| tig0018650 | CDS | 57618 | 57674 | 57618 | ID=Msa1368590-mRNA-1:cds;Parent=Msa1368590-mRNA-1 |
| tig0018650 | CDS | 57276 | 57398 | 57276 | ID=Msa1368590-mRNA-1:cds;Parent=Msa1368590-mRNA-1 |
| tig0018650 | CDS | 56378 | 56574 | 56378 | ID=Msa1368590-mRNA-1:cds;Parent=Msa1368590-mRNA-1 |
| tig0018650 | CDS | 56172 | 56291 | 56172 | ID=Msa1368590-mRNA-1:cds;Parent=Msa1368590-mRNA-1 |
| tig0018650 | CDS | 55928 | 56048 | 55928 | ID=Msa1368590-mRNA-1:cds;Parent=Msa1368590-mRNA-1 |
| tig0018650 | three_prime_UTR | 55708 | 55927 | 55708 | ID=Msa1368590-mRNA-1:three_prime_utr;Parent=Msa1368590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
