Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268620 | YP_009656364.1 | 98.830 | 342 | 2 | 1 | 6 | 345 | 385 | 726 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268620 | sp|P12227|RPOC2_PEA | 88.953 | 344 | 31 | 3 | 6 | 345 | 181 | 521 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268620 | A0A4P8F1R6 | 98.830 | 342 | 2 | 1 | 6 | 345 | 385 | 726 | 0.0 | 689 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0268620 | Msa0268980 | 0.837922 | 3.904221e-57 | -8.615850e-47 |
| Msa0268620 | Msa0582930 | 0.803400 | 3.549366e-49 | -8.615850e-47 |
| Msa0268620 | Msa1086100 | 0.801009 | 1.102088e-48 | -8.615850e-47 |
| Msa0268620 | Msa1086910 | 0.802024 | 6.827724e-49 | -8.615850e-47 |
| Msa0268620 | Msa1354930 | 0.813413 | 2.592243e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268620 | MtrunA17_CPg0493001 | 95.906 | 342 | 12 | 1 | 6 | 345 | 389 | 730 | 0.0 | 667 |
| Msa0268620 | MtrunA17_Chr4g0016671 | 95.906 | 342 | 12 | 1 | 6 | 345 | 389 | 730 | 0.0 | 667 |
| Msa0268620 | MtrunA17_Chr3g0095741 | 97.015 | 335 | 9 | 1 | 11 | 345 | 9 | 342 | 0.0 | 656 |
| Msa0268620 | MtrunA17_Chr4g0015581 | 97.279 | 147 | 4 | 0 | 11 | 157 | 235 | 381 | 5.87e-97 | 293 |
| Msa0268620 | MtrunA17_Chr4g0015591 | 86.765 | 136 | 18 | 0 | 165 | 300 | 1 | 136 | 1.08e-76 | 249 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268620 | ATCG00170.1 | 67.656 | 337 | 109 | 0 | 11 | 347 | 394 | 730 | 2.20e-153 | 466 |
Find 48 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACTTTGATTTGGTATTT+TGG | 0.149348 | 2_2:-70338210 | None:intergenic |
| TACGGATCATTCTCATTTAA+TGG | 0.188994 | 2_2:+70337894 | Msa0268620:CDS |
| AAATCTATTTCTTCGTCTTT+TGG | 0.240397 | 2_2:-70337953 | None:intergenic |
| ACTATTATTCCGTACCATTA+TGG | 0.259697 | 2_2:-70338283 | None:intergenic |
| AGTCATTTATGGATCTTATC+AGG | 0.301174 | 2_2:+70337664 | Msa0268620:CDS |
| AAAATCGATCTACTTTGATT+TGG | 0.319610 | 2_2:-70338218 | None:intergenic |
| ACCCGAATCTTCTTCCATAA+TGG | 0.320662 | 2_2:+70338269 | Msa0268620:CDS |
| TTATTAAGTTTGAAGACTTT+TGG | 0.326721 | 2_2:+70337820 | Msa0268620:CDS |
| TTCTGGAAATATCCATTTCC+CGG | 0.342529 | 2_2:+70338407 | Msa0268620:CDS |
| CTTCTTATATTGAAAGTGAT+TGG | 0.363141 | 2_2:-70338324 | None:intergenic |
| TTATCCCTCTCTCCGGGAAA+TGG | 0.363705 | 2_2:-70338419 | None:intergenic |
| AACATTGATTCTCTTTCTAC+TGG | 0.378165 | 2_2:+70337745 | Msa0268620:CDS |
| GGTAAAATATGCACTTCTTC+GGG | 0.379845 | 2_2:-70338249 | None:intergenic |
| TACCATTATGGAAGAAGATT+CGG | 0.389569 | 2_2:-70338271 | None:intergenic |
| GGGTAAAATATGCACTTCTT+CGG | 0.392587 | 2_2:-70338250 | None:intergenic |
| AATAATAGTCTCGTTGGAAT+AGG | 0.398435 | 2_2:+70338297 | Msa0268620:CDS |
| ATTACTAAATATAGAACTAT+AGG | 0.405919 | 2_2:+70338126 | Msa0268620:CDS |
| AACGAACTAATGCGACCTTC+TGG | 0.414791 | 2_2:+70338009 | Msa0268620:CDS |
| TCTTTCCTTCTTGAATCGAT+TGG | 0.414961 | 2_2:-70337987 | None:intergenic |
| ACCATTGATAGGTATTTCAA+TGG | 0.423769 | 2_2:-70338037 | None:intergenic |
| CAATACAGAAGACAGAATTC+AGG | 0.444868 | 2_2:+70338102 | Msa0268620:CDS |
| ACCATTATGGAAGAAGATTC+GGG | 0.451336 | 2_2:-70338270 | None:intergenic |
| TCCATTGAAATACCTATCAA+TGG | 0.461052 | 2_2:+70338036 | Msa0268620:CDS |
| CCTTCTTGAATCGATTGGAA+TGG | 0.469170 | 2_2:-70337982 | None:intergenic |
| GAATTCTGTCTTCTGTATTG+AGG | 0.475926 | 2_2:-70338099 | None:intergenic |
| ACTCAGAAGGCGAAATGCAT+TGG | 0.496258 | 2_2:+70337578 | Msa0268620:CDS |
| GGATATCTTATCCCTCTCTC+CGG | 0.501160 | 2_2:-70338426 | None:intergenic |
| TATCAAGATAGAACTGTGTC+GGG | 0.526561 | 2_2:-70338447 | None:intergenic |
| ATTTAATCAAATAATATGTA+CGG | 0.533241 | 2_2:+70337876 | Msa0268620:CDS |
| TCTATATTACATATAAAAGC+AGG | 0.536951 | 2_2:-70337379 | None:intergenic |
| CCATTCCAATCGATTCAAGA+AGG | 0.543286 | 2_2:+70337982 | Msa0268620:CDS |
| GTACGGAATAATAGTCTCGT+TGG | 0.546841 | 2_2:+70338291 | Msa0268620:CDS |
| CATATTTATTCTGACTCAGA+AGG | 0.548655 | 2_2:+70337565 | Msa0268620:CDS |
| GTATCAAGATAGAACTGTGT+CGG | 0.565364 | 2_2:-70338448 | None:intergenic |
| AAGAAGTCGAGTAGGCGGAT+TGG | 0.565820 | 2_2:+70338341 | Msa0268620:CDS |
| GATATCTTATCCCTCTCTCC+GGG | 0.575421 | 2_2:-70338425 | None:intergenic |
| GAAGATTTCATTGAGTATCG+AGG | 0.578377 | 2_2:+70338171 | Msa0268620:CDS |
| AATCTTCTTCCATAATGGTA+CGG | 0.581413 | 2_2:+70338274 | Msa0268620:CDS |
| TCTTATCAGGAAAGTCGTGC+AGG | 0.586356 | 2_2:+70337677 | Msa0268620:CDS |
| AATATCCATTTCCCGGAGAG+AGG | 0.588175 | 2_2:+70338414 | Msa0268620:CDS |
| ATATCCATTTCCCGGAGAGA+GGG | 0.606974 | 2_2:+70338415 | Msa0268620:CDS |
| GTGATTGCTGAGATCCGCGC+GGG | 0.626051 | 2_2:+70337505 | Msa0268620:CDS |
| AATATAAGAAGTCGAGTAGG+CGG | 0.636144 | 2_2:+70338336 | Msa0268620:CDS |
| TTCAATATAAGAAGTCGAGT+AGG | 0.655266 | 2_2:+70338333 | Msa0268620:CDS |
| ATTTCAATGGAAACACCAGA+AGG | 0.673294 | 2_2:-70338024 | None:intergenic |
| TTCGGATGCATGGTACACAT+CGG | 0.696241 | 2_2:-70337605 | None:intergenic |
| TAAAAGTATATGTTCCCGCG+CGG | 0.748407 | 2_2:-70337519 | None:intergenic |
| AGTGATTGCTGAGATCCGCG+CGG | 0.769084 | 2_2:+70337504 | Msa0268620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATCAAATAATATGTA+CGG | + | chr2_2:70337876-70337895 | Msa0268620:CDS | 10.0% |
| !!! | TTTTTTTTTTCTTTTCTAAT+CGG | - | chr2_2:70338368-70338387 | None:intergenic | 10.0% |
| !! | ATTTAATCAAATAATATGTA+CGG | + | chr2_2:70337876-70337895 | Msa0268620:CDS | 10.0% |
| !!! | TTTTTTTTTTCTTTTCTAAT+CGG | - | chr2_2:70338368-70338387 | None:intergenic | 10.0% |
| !!! | ATACTTTTAATTTGAAAGAA+AGG | + | chr2_2:70337533-70337552 | Msa0268620:CDS | 15.0% |
| !!! | TACTTTTAATTTGAAAGAAA+GGG | + | chr2_2:70337534-70337553 | Msa0268620:CDS | 15.0% |
| !! | TACATTACTATACAAAAATT+CGG | - | chr2_2:70337626-70337645 | None:intergenic | 15.0% |
| !! | ATTACTAAATATAGAACTAT+AGG | + | chr2_2:70338126-70338145 | Msa0268620:CDS | 15.0% |
| !!! | ATCGAATTAAAAATATTTTC+TGG | + | chr2_2:70338390-70338409 | Msa0268620:CDS | 15.0% |
| !!! | ATACTTTTAATTTGAAAGAA+AGG | + | chr2_2:70337533-70337552 | Msa0268620:CDS | 15.0% |
| !!! | TACTTTTAATTTGAAAGAAA+GGG | + | chr2_2:70337534-70337553 | Msa0268620:CDS | 15.0% |
| !! | TACATTACTATACAAAAATT+CGG | - | chr2_2:70337626-70337645 | None:intergenic | 15.0% |
| !! | ATTACTAAATATAGAACTAT+AGG | + | chr2_2:70338126-70338145 | Msa0268620:CDS | 15.0% |
| !!! | ATCGAATTAAAAATATTTTC+TGG | + | chr2_2:70338390-70338409 | Msa0268620:CDS | 15.0% |
| !! | TCTATATTACATATAAAAGC+AGG | - | chr2_2:70337382-70337401 | None:intergenic | 20.0% |
| !!! | TGAACTAATAGAAAACTTTT+TGG | - | chr2_2:70337457-70337476 | None:intergenic | 20.0% |
| !!! | TTATTAAGTTTGAAGACTTT+TGG | + | chr2_2:70337820-70337839 | Msa0268620:CDS | 20.0% |
| !!! | TCACGATACTTTTTATTTAT+TGG | + | chr2_2:70337930-70337949 | Msa0268620:CDS | 20.0% |
| !!! | GAAATCTTCTTTTTGAAAAA+CGG | - | chr2_2:70338160-70338179 | None:intergenic | 20.0% |
| !! | TCTATATTACATATAAAAGC+AGG | - | chr2_2:70337382-70337401 | None:intergenic | 20.0% |
| !!! | TGAACTAATAGAAAACTTTT+TGG | - | chr2_2:70337457-70337476 | None:intergenic | 20.0% |
| !!! | TTATTAAGTTTGAAGACTTT+TGG | + | chr2_2:70337820-70337839 | Msa0268620:CDS | 20.0% |
| !!! | TCACGATACTTTTTATTTAT+TGG | + | chr2_2:70337930-70337949 | Msa0268620:CDS | 20.0% |
| !!! | GAAATCTTCTTTTTGAAAAA+CGG | - | chr2_2:70338160-70338179 | None:intergenic | 20.0% |
| !! | ACTAATAGAAAACTTTTTGG+TGG | - | chr2_2:70337454-70337473 | None:intergenic | 25.0% |
| ! | TACCAAAAACAAGTCATTTA+TGG | + | chr2_2:70337653-70337672 | Msa0268620:CDS | 25.0% |
| !!! | ATCCATAAATGACTTGTTTT+TGG | - | chr2_2:70337658-70337677 | None:intergenic | 25.0% |
| !! | ACTTTTGGTACAAAAGAAAA+GGG | + | chr2_2:70337835-70337854 | Msa0268620:CDS | 25.0% |
| !!! | AAATCTATTTCTTCGTCTTT+TGG | - | chr2_2:70337956-70337975 | None:intergenic | 25.0% |
| ! | CTATGAAAAATACCATTGAT+AGG | - | chr2_2:70338051-70338070 | None:intergenic | 25.0% |
| !!! | TCTACTTTGATTTGGTATTT+TGG | - | chr2_2:70338213-70338232 | None:intergenic | 25.0% |
| ! | AAAATCGATCTACTTTGATT+TGG | - | chr2_2:70338221-70338240 | None:intergenic | 25.0% |
| ! | CTTCTTATATTGAAAGTGAT+TGG | - | chr2_2:70338327-70338346 | None:intergenic | 25.0% |
| !! | ACTAATAGAAAACTTTTTGG+TGG | - | chr2_2:70337454-70337473 | None:intergenic | 25.0% |
| ! | TACCAAAAACAAGTCATTTA+TGG | + | chr2_2:70337653-70337672 | Msa0268620:CDS | 25.0% |
| !!! | ATCCATAAATGACTTGTTTT+TGG | - | chr2_2:70337658-70337677 | None:intergenic | 25.0% |
| !! | ACTTTTGGTACAAAAGAAAA+GGG | + | chr2_2:70337835-70337854 | Msa0268620:CDS | 25.0% |
| !!! | AAATCTATTTCTTCGTCTTT+TGG | - | chr2_2:70337956-70337975 | None:intergenic | 25.0% |
| ! | CTATGAAAAATACCATTGAT+AGG | - | chr2_2:70338051-70338070 | None:intergenic | 25.0% |
| !!! | TCTACTTTGATTTGGTATTT+TGG | - | chr2_2:70338213-70338232 | None:intergenic | 25.0% |
| ! | AAAATCGATCTACTTTGATT+TGG | - | chr2_2:70338221-70338240 | None:intergenic | 25.0% |
| ! | CTTCTTATATTGAAAGTGAT+TGG | - | chr2_2:70338327-70338346 | None:intergenic | 25.0% |
| CATATTTATTCTGACTCAGA+AGG | + | chr2_2:70337565-70337584 | Msa0268620:CDS | 30.0% | |
| TATACAAAAATTCGGATGCA+TGG | - | chr2_2:70337618-70337637 | None:intergenic | 30.0% | |
| AGTCATTTATGGATCTTATC+AGG | + | chr2_2:70337664-70337683 | Msa0268620:CDS | 30.0% | |
| !!! | AATCCATTTTTTACTTCGCA+AGG | + | chr2_2:70337708-70337727 | Msa0268620:CDS | 30.0% |
| !! | AACATTGATTCTCTTTCTAC+TGG | + | chr2_2:70337745-70337764 | Msa0268620:CDS | 30.0% |
| ! | GACTTTTGGTACAAAAGAAA+AGG | + | chr2_2:70337834-70337853 | Msa0268620:CDS | 30.0% |
| ! | CTTTTGGTACAAAAGAAAAG+GGG | + | chr2_2:70337836-70337855 | Msa0268620:CDS | 30.0% |
| TACGGATCATTCTCATTTAA+TGG | + | chr2_2:70337894-70337913 | Msa0268620:CDS | 30.0% | |
| !! | AAAGTATCGTGAAAAATAGC+AGG | - | chr2_2:70337922-70337941 | None:intergenic | 30.0% |
| TCCATTGAAATACCTATCAA+TGG | + | chr2_2:70338036-70338055 | Msa0268620:CDS | 30.0% | |
| ACCATTGATAGGTATTTCAA+TGG | - | chr2_2:70338040-70338059 | None:intergenic | 30.0% | |
| TACCATTATGGAAGAAGATT+CGG | - | chr2_2:70338274-70338293 | None:intergenic | 30.0% | |
| AATCTTCTTCCATAATGGTA+CGG | + | chr2_2:70338274-70338293 | Msa0268620:CDS | 30.0% | |
| ACTATTATTCCGTACCATTA+TGG | - | chr2_2:70338286-70338305 | None:intergenic | 30.0% | |
| AATAATAGTCTCGTTGGAAT+AGG | + | chr2_2:70338297-70338316 | Msa0268620:CDS | 30.0% | |
| TTCAATATAAGAAGTCGAGT+AGG | + | chr2_2:70338333-70338352 | Msa0268620:CDS | 30.0% | |
| CATATTTATTCTGACTCAGA+AGG | + | chr2_2:70337565-70337584 | Msa0268620:CDS | 30.0% | |
| TATACAAAAATTCGGATGCA+TGG | - | chr2_2:70337618-70337637 | None:intergenic | 30.0% | |
| AGTCATTTATGGATCTTATC+AGG | + | chr2_2:70337664-70337683 | Msa0268620:CDS | 30.0% | |
| !!! | AATCCATTTTTTACTTCGCA+AGG | + | chr2_2:70337708-70337727 | Msa0268620:CDS | 30.0% |
| !! | AACATTGATTCTCTTTCTAC+TGG | + | chr2_2:70337745-70337764 | Msa0268620:CDS | 30.0% |
| ! | GACTTTTGGTACAAAAGAAA+AGG | + | chr2_2:70337834-70337853 | Msa0268620:CDS | 30.0% |
| ! | CTTTTGGTACAAAAGAAAAG+GGG | + | chr2_2:70337836-70337855 | Msa0268620:CDS | 30.0% |
| TACGGATCATTCTCATTTAA+TGG | + | chr2_2:70337894-70337913 | Msa0268620:CDS | 30.0% | |
| !! | AAAGTATCGTGAAAAATAGC+AGG | - | chr2_2:70337922-70337941 | None:intergenic | 30.0% |
| TCCATTGAAATACCTATCAA+TGG | + | chr2_2:70338036-70338055 | Msa0268620:CDS | 30.0% | |
| ACCATTGATAGGTATTTCAA+TGG | - | chr2_2:70338040-70338059 | None:intergenic | 30.0% | |
| TACCATTATGGAAGAAGATT+CGG | - | chr2_2:70338274-70338293 | None:intergenic | 30.0% | |
| AATCTTCTTCCATAATGGTA+CGG | + | chr2_2:70338274-70338293 | Msa0268620:CDS | 30.0% | |
| ACTATTATTCCGTACCATTA+TGG | - | chr2_2:70338286-70338305 | None:intergenic | 30.0% | |
| AATAATAGTCTCGTTGGAAT+AGG | + | chr2_2:70338297-70338316 | Msa0268620:CDS | 30.0% | |
| TTCAATATAAGAAGTCGAGT+AGG | + | chr2_2:70338333-70338352 | Msa0268620:CDS | 30.0% | |
| GATCCTTGCGAAGTAAAAAA+TGG | - | chr2_2:70337714-70337733 | None:intergenic | 35.0% | |
| TCTTTCCTTCTTGAATCGAT+TGG | - | chr2_2:70337990-70338009 | None:intergenic | 35.0% | |
| ATTTCAATGGAAACACCAGA+AGG | - | chr2_2:70338027-70338046 | None:intergenic | 35.0% | |
| GAATTCTGTCTTCTGTATTG+AGG | - | chr2_2:70338102-70338121 | None:intergenic | 35.0% | |
| CAATACAGAAGACAGAATTC+AGG | + | chr2_2:70338102-70338121 | Msa0268620:CDS | 35.0% | |
| ! | GAAGATTTCATTGAGTATCG+AGG | + | chr2_2:70338171-70338190 | Msa0268620:CDS | 35.0% |
| GGTAAAATATGCACTTCTTC+GGG | - | chr2_2:70338252-70338271 | None:intergenic | 35.0% | |
| GGGTAAAATATGCACTTCTT+CGG | - | chr2_2:70338253-70338272 | None:intergenic | 35.0% | |
| ACCATTATGGAAGAAGATTC+GGG | - | chr2_2:70338273-70338292 | None:intergenic | 35.0% | |
| AATATAAGAAGTCGAGTAGG+CGG | + | chr2_2:70338336-70338355 | Msa0268620:CDS | 35.0% | |
| ! | TTCTGGAAATATCCATTTCC+CGG | + | chr2_2:70338407-70338426 | Msa0268620:CDS | 35.0% |
| GATCCTTGCGAAGTAAAAAA+TGG | - | chr2_2:70337714-70337733 | None:intergenic | 35.0% | |
| TCTTTCCTTCTTGAATCGAT+TGG | - | chr2_2:70337990-70338009 | None:intergenic | 35.0% | |
| ATTTCAATGGAAACACCAGA+AGG | - | chr2_2:70338027-70338046 | None:intergenic | 35.0% | |
| GAATTCTGTCTTCTGTATTG+AGG | - | chr2_2:70338102-70338121 | None:intergenic | 35.0% | |
| CAATACAGAAGACAGAATTC+AGG | + | chr2_2:70338102-70338121 | Msa0268620:CDS | 35.0% | |
| ! | GAAGATTTCATTGAGTATCG+AGG | + | chr2_2:70338171-70338190 | Msa0268620:CDS | 35.0% |
| GGTAAAATATGCACTTCTTC+GGG | - | chr2_2:70338252-70338271 | None:intergenic | 35.0% | |
| GGGTAAAATATGCACTTCTT+CGG | - | chr2_2:70338253-70338272 | None:intergenic | 35.0% | |
| ACCATTATGGAAGAAGATTC+GGG | - | chr2_2:70338273-70338292 | None:intergenic | 35.0% | |
| AATATAAGAAGTCGAGTAGG+CGG | + | chr2_2:70338336-70338355 | Msa0268620:CDS | 35.0% | |
| ! | TTCTGGAAATATCCATTTCC+CGG | + | chr2_2:70338407-70338426 | Msa0268620:CDS | 35.0% |
| ! | TAAAAGTATATGTTCCCGCG+CGG | - | chr2_2:70337522-70337541 | None:intergenic | 40.0% |
| CCTTCTTGAATCGATTGGAA+TGG | - | chr2_2:70337985-70338004 | None:intergenic | 40.0% | |
| ! | CCATTCCAATCGATTCAAGA+AGG | + | chr2_2:70337982-70338001 | Msa0268620:CDS | 40.0% |
| ACCCGAATCTTCTTCCATAA+TGG | + | chr2_2:70338269-70338288 | Msa0268620:CDS | 40.0% | |
| GTACGGAATAATAGTCTCGT+TGG | + | chr2_2:70338291-70338310 | Msa0268620:CDS | 40.0% | |
| ! | TAAAAGTATATGTTCCCGCG+CGG | - | chr2_2:70337522-70337541 | None:intergenic | 40.0% |
| CCTTCTTGAATCGATTGGAA+TGG | - | chr2_2:70337985-70338004 | None:intergenic | 40.0% | |
| ! | CCATTCCAATCGATTCAAGA+AGG | + | chr2_2:70337982-70338001 | Msa0268620:CDS | 40.0% |
| ACCCGAATCTTCTTCCATAA+TGG | + | chr2_2:70338269-70338288 | Msa0268620:CDS | 40.0% | |
| GTACGGAATAATAGTCTCGT+TGG | + | chr2_2:70338291-70338310 | Msa0268620:CDS | 40.0% | |
| ACTCAGAAGGCGAAATGCAT+TGG | + | chr2_2:70337578-70337597 | Msa0268620:CDS | 45.0% | |
| TTCGGATGCATGGTACACAT+CGG | - | chr2_2:70337608-70337627 | None:intergenic | 45.0% | |
| TCTTATCAGGAAAGTCGTGC+AGG | + | chr2_2:70337677-70337696 | Msa0268620:CDS | 45.0% | |
| AACGAACTAATGCGACCTTC+TGG | + | chr2_2:70338009-70338028 | Msa0268620:CDS | 45.0% | |
| AATATCCATTTCCCGGAGAG+AGG | + | chr2_2:70338414-70338433 | Msa0268620:CDS | 45.0% | |
| ATATCCATTTCCCGGAGAGA+GGG | + | chr2_2:70338415-70338434 | Msa0268620:CDS | 45.0% | |
| GATATCTTATCCCTCTCTCC+GGG | - | chr2_2:70338428-70338447 | None:intergenic | 45.0% | |
| GGATATCTTATCCCTCTCTC+CGG | - | chr2_2:70338429-70338448 | None:intergenic | 45.0% | |
| ACTCAGAAGGCGAAATGCAT+TGG | + | chr2_2:70337578-70337597 | Msa0268620:CDS | 45.0% | |
| TTCGGATGCATGGTACACAT+CGG | - | chr2_2:70337608-70337627 | None:intergenic | 45.0% | |
| TCTTATCAGGAAAGTCGTGC+AGG | + | chr2_2:70337677-70337696 | Msa0268620:CDS | 45.0% | |
| AACGAACTAATGCGACCTTC+TGG | + | chr2_2:70338009-70338028 | Msa0268620:CDS | 45.0% | |
| AATATCCATTTCCCGGAGAG+AGG | + | chr2_2:70338414-70338433 | Msa0268620:CDS | 45.0% | |
| ATATCCATTTCCCGGAGAGA+GGG | + | chr2_2:70338415-70338434 | Msa0268620:CDS | 45.0% | |
| GATATCTTATCCCTCTCTCC+GGG | - | chr2_2:70338428-70338447 | None:intergenic | 45.0% | |
| GGATATCTTATCCCTCTCTC+CGG | - | chr2_2:70338429-70338448 | None:intergenic | 45.0% | |
| AAGAAGTCGAGTAGGCGGAT+TGG | + | chr2_2:70338341-70338360 | Msa0268620:CDS | 50.0% | |
| TTATCCCTCTCTCCGGGAAA+TGG | - | chr2_2:70338422-70338441 | None:intergenic | 50.0% | |
| AAGAAGTCGAGTAGGCGGAT+TGG | + | chr2_2:70338341-70338360 | Msa0268620:CDS | 50.0% | |
| TTATCCCTCTCTCCGGGAAA+TGG | - | chr2_2:70338422-70338441 | None:intergenic | 50.0% | |
| AGTGATTGCTGAGATCCGCG+CGG | + | chr2_2:70337504-70337523 | Msa0268620:CDS | 55.0% | |
| AGTGATTGCTGAGATCCGCG+CGG | + | chr2_2:70337504-70337523 | Msa0268620:CDS | 55.0% | |
| GTGATTGCTGAGATCCGCGC+GGG | + | chr2_2:70337505-70337524 | Msa0268620:CDS | 60.0% | |
| GTGATTGCTGAGATCCGCGC+GGG | + | chr2_2:70337505-70337524 | Msa0268620:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 70337371 | 70338467 | 70337371 | ID=Msa0268620;Name=Msa0268620 |
| chr2_2 | mRNA | 70337371 | 70338467 | 70337371 | ID=Msa0268620-mRNA-1;Parent=Msa0268620;Name=Msa0268620-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0|0|3|0|357 |
| chr2_2 | exon | 70337371 | 70337391 | 70337371 | ID=Msa0268620-mRNA-1:exon:22587;Parent=Msa0268620-mRNA-1 |
| chr2_2 | exon | 70337401 | 70337408 | 70337401 | ID=Msa0268620-mRNA-1:exon:22588;Parent=Msa0268620-mRNA-1 |
| chr2_2 | exon | 70337423 | 70338467 | 70337423 | ID=Msa0268620-mRNA-1:exon:22589;Parent=Msa0268620-mRNA-1 |
| chr2_2 | CDS | 70337371 | 70337391 | 70337371 | ID=Msa0268620-mRNA-1:cds;Parent=Msa0268620-mRNA-1 |
| chr2_2 | CDS | 70337401 | 70337408 | 70337401 | ID=Msa0268620-mRNA-1:cds;Parent=Msa0268620-mRNA-1 |
| chr2_2 | CDS | 70337423 | 70338467 | 70337423 | ID=Msa0268620-mRNA-1:cds;Parent=Msa0268620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
