Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268980 | AWW91871.1 | 87.812 | 361 | 12 | 3 | 6 | 334 | 389 | 749 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268980 | sp|P12227|RPOC2_PEA | 79.063 | 363 | 39 | 5 | 6 | 334 | 181 | 540 | 0.0 | 542 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268980 | A0A4P8F1R6 | 87.812 | 361 | 12 | 3 | 6 | 334 | 385 | 745 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0268620 | Msa0268980 | 0.837922 | 3.904221e-57 | -8.615850e-47 |
| Msa0268980 | Msa0924870 | 0.801012 | 1.100491e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268980 | MtrunA17_CPg0493001 | 85.042 | 361 | 22 | 3 | 6 | 334 | 389 | 749 | 0.0 | 575 |
| Msa0268980 | MtrunA17_Chr4g0016671 | 85.042 | 361 | 22 | 3 | 6 | 334 | 389 | 749 | 0.0 | 575 |
| Msa0268980 | MtrunA17_Chr3g0095741 | 85.876 | 354 | 19 | 3 | 11 | 334 | 9 | 361 | 0.0 | 568 |
| Msa0268980 | MtrunA17_Chr4g0015581 | 77.551 | 147 | 4 | 1 | 11 | 128 | 235 | 381 | 2.22e-67 | 217 |
| Msa0268980 | MtrunA17_Chr4g0015591 | 79.412 | 136 | 27 | 1 | 136 | 270 | 1 | 136 | 1.27e-65 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268980 | ATCG00170.1 | 60.165 | 364 | 115 | 2 | 11 | 344 | 394 | 757 | 5.20e-136 | 420 |
Find 46 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTACTTTGATTGGTATTT+TGG | 0.131722 | 2_2:+70466263 | None:intergenic |
| TACGGATCATTCTCATTTAA+TGG | 0.188994 | 2_2:-70466578 | Msa0268980:CDS |
| AAATCTATTTCTTCGTCTTT+TGG | 0.240397 | 2_2:+70466519 | None:intergenic |
| ACTATTATTCCGTACCATTA+TGG | 0.259697 | 2_2:+70466192 | None:intergenic |
| TATCCCTCTCTCCGGGAAAA+TGG | 0.265071 | 2_2:+70466056 | None:intergenic |
| ACCCGAATCTTCTTCCATAA+TGG | 0.320662 | 2_2:-70466206 | Msa0268980:CDS |
| TTATTAAGTTTGAAGACTTT+TGG | 0.326721 | 2_2:-70466652 | Msa0268980:CDS |
| CTTCTTATATTGAAAGTGAT+TGG | 0.363141 | 2_2:+70466151 | None:intergenic |
| AACATTGATTCTCTTTCTAC+TGG | 0.378165 | 2_2:-70466727 | Msa0268980:CDS |
| GGTAAAATATGCACTTCTTC+GGG | 0.379845 | 2_2:+70466226 | None:intergenic |
| TACCATTATGGAAGAAGATT+CGG | 0.389569 | 2_2:+70466204 | None:intergenic |
| GGGTAAAATATGCACTTCTT+CGG | 0.392587 | 2_2:+70466225 | None:intergenic |
| AATAATAGTCTCGTTGGAAT+AGG | 0.398435 | 2_2:-70466178 | Msa0268980:CDS |
| ATTACTAAATATAGAACTAT+AGG | 0.405919 | 2_2:-70466346 | Msa0268980:CDS |
| AACGAACTAATGCGACCTTC+TGG | 0.414791 | 2_2:-70466463 | Msa0268980:CDS |
| TCTTTCCTTCTTGAATCGAT+TGG | 0.414961 | 2_2:+70466485 | None:intergenic |
| ACCATTGATAGGTATTTCAA+TGG | 0.423769 | 2_2:+70466435 | None:intergenic |
| TCTTGGTAGTTGTGATCCAT+TGG | 0.435740 | 2_2:+70465943 | None:intergenic |
| CAATACAGAAGACAGAATTC+AGG | 0.444868 | 2_2:-70466370 | Msa0268980:CDS |
| ACCATTATGGAAGAAGATTC+GGG | 0.451336 | 2_2:+70466205 | None:intergenic |
| TCCATTGAAATACCTATCAA+TGG | 0.461052 | 2_2:-70466436 | Msa0268980:CDS |
| CCTTCTTGAATCGATTGGAA+TGG | 0.469170 | 2_2:+70466490 | None:intergenic |
| GAATTCTGTCTTCTGTATTG+AGG | 0.475926 | 2_2:+70466373 | None:intergenic |
| ACTCAGAAGGCGAAATGCAT+TGG | 0.496258 | 2_2:-70466893 | Msa0268980:CDS |
| GGATATCTTATCCCTCTCTC+CGG | 0.501160 | 2_2:+70466048 | None:intergenic |
| TATCAAGATAGAACTGTGTC+GGG | 0.526561 | 2_2:+70466027 | None:intergenic |
| ATTTAATCAAATAATATGTA+CGG | 0.533241 | 2_2:-70466596 | Msa0268980:CDS |
| TCTATATTACATATAAAAGC+AGG | 0.536951 | 2_2:+70467092 | None:intergenic |
| CCATTCCAATCGATTCAAGA+AGG | 0.543286 | 2_2:-70466490 | Msa0268980:CDS |
| GTACGGAATAATAGTCTCGT+TGG | 0.546841 | 2_2:-70466184 | Msa0268980:CDS |
| CATATTTATTCTGACTCAGA+AGG | 0.548655 | 2_2:-70466906 | Msa0268980:CDS |
| GTATCAAGATAGAACTGTGT+CGG | 0.565364 | 2_2:+70466026 | None:intergenic |
| AAGAAGTCGAGTAGGCGGAT+TGG | 0.565820 | 2_2:-70466134 | Msa0268980:CDS |
| ATAATTGGATCTATGTCCAA+TGG | 0.570241 | 2_2:-70465959 | Msa0268980:CDS |
| GATATCTTATCCCTCTCTCC+GGG | 0.575421 | 2_2:+70466049 | None:intergenic |
| GAAGATTTCATTGAGTATCG+AGG | 0.578377 | 2_2:-70466301 | Msa0268980:CDS |
| AATCTTCTTCCATAATGGTA+CGG | 0.581413 | 2_2:-70466201 | Msa0268980:CDS |
| TATCTTGATACCACCCGGAA+CGG | 0.614773 | 2_2:-70466014 | Msa0268980:CDS |
| GTGATTGCTGAGATCCGCGC+GGG | 0.626051 | 2_2:-70466966 | Msa0268980:CDS |
| AATATAAGAAGTCGAGTAGG+CGG | 0.636144 | 2_2:-70466139 | Msa0268980:CDS |
| TTCAATATAAGAAGTCGAGT+AGG | 0.655266 | 2_2:-70466142 | Msa0268980:CDS |
| AGTTCTATCTTGATACCACC+CGG | 0.660030 | 2_2:-70466019 | Msa0268980:CDS |
| ATTTCAATGGAAACACCAGA+AGG | 0.673294 | 2_2:+70466448 | None:intergenic |
| TTCGGATGCATGGTACACAT+CGG | 0.696241 | 2_2:+70466866 | None:intergenic |
| TAAAAGTATATGTTCCCGCG+CGG | 0.748407 | 2_2:+70466952 | None:intergenic |
| AGTGATTGCTGAGATCCGCG+CGG | 0.769084 | 2_2:-70466967 | Msa0268980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATCAAATAATATGTA+CGG | - | chr2_2:70466417-70466436 | Msa0268980:CDS | 10.0% |
| !!! | TTTTTTTTTTCTTTTCTAAT+CGG | + | chr2_2:70466906-70466925 | None:intergenic | 10.0% |
| !! | AATCAAAAAAAATTCATAAT+TGG | - | chr2_2:70467039-70467058 | Msa0268980:CDS | 10.0% |
| !! | ATTTAATCAAATAATATGTA+CGG | - | chr2_2:70466417-70466436 | Msa0268980:CDS | 10.0% |
| !!! | TTTTTTTTTTCTTTTCTAAT+CGG | + | chr2_2:70466906-70466925 | None:intergenic | 10.0% |
| !! | AATCAAAAAAAATTCATAAT+TGG | - | chr2_2:70467039-70467058 | Msa0268980:CDS | 10.0% |
| !!! | ATACTTTTAATTTGAAAGAA+AGG | - | chr2_2:70466075-70466094 | Msa0268980:CDS | 15.0% |
| !!! | TACTTTTAATTTGAAAGAAA+GGG | - | chr2_2:70466076-70466095 | Msa0268980:CDS | 15.0% |
| !! | TACATTACTATACAAAAATT+CGG | + | chr2_2:70466168-70466187 | None:intergenic | 15.0% |
| !! | ATTACTAAATATAGAACTAT+AGG | - | chr2_2:70466667-70466686 | Msa0268980:CDS | 15.0% |
| !!! | ATCGAATTAAAAATATTTTC+TGG | - | chr2_2:70466928-70466947 | Msa0268980:CDS | 15.0% |
| !!! | ATACTTTTAATTTGAAAGAA+AGG | - | chr2_2:70466075-70466094 | Msa0268980:CDS | 15.0% |
| !!! | TACTTTTAATTTGAAAGAAA+GGG | - | chr2_2:70466076-70466095 | Msa0268980:CDS | 15.0% |
| !! | TACATTACTATACAAAAATT+CGG | + | chr2_2:70466168-70466187 | None:intergenic | 15.0% |
| !! | ATTACTAAATATAGAACTAT+AGG | - | chr2_2:70466667-70466686 | Msa0268980:CDS | 15.0% |
| !!! | ATCGAATTAAAAATATTTTC+TGG | - | chr2_2:70466928-70466947 | Msa0268980:CDS | 15.0% |
| !! | TCTATATTACATATAAAAGC+AGG | + | chr2_2:70465924-70465943 | None:intergenic | 20.0% |
| !!! | TGAACTAATAGAAAACTTTT+TGG | + | chr2_2:70465999-70466018 | None:intergenic | 20.0% |
| !!! | TTATTAAGTTTGAAGACTTT+TGG | - | chr2_2:70466361-70466380 | Msa0268980:CDS | 20.0% |
| !!! | TCACGATACTTTTTATTTAT+TGG | - | chr2_2:70466471-70466490 | Msa0268980:CDS | 20.0% |
| !!! | GAAATCTTCTTTTTGAAAAA+CGG | + | chr2_2:70466701-70466720 | None:intergenic | 20.0% |
| !!! | CAAAACAAAATACTTTTTCT+TGG | + | chr2_2:70467090-70467109 | None:intergenic | 20.0% |
| !!! | CAAGAAAAAGTATTTTGTTT+TGG | - | chr2_2:70467088-70467107 | Msa0268980:intron | 20.0% |
| !!! | AAAAGTATTTTGTTTTGGTT+CGG | - | chr2_2:70467093-70467112 | Msa0268980:intron | 20.0% |
| !! | TCTATATTACATATAAAAGC+AGG | + | chr2_2:70465924-70465943 | None:intergenic | 20.0% |
| !!! | TGAACTAATAGAAAACTTTT+TGG | + | chr2_2:70465999-70466018 | None:intergenic | 20.0% |
| !!! | TTATTAAGTTTGAAGACTTT+TGG | - | chr2_2:70466361-70466380 | Msa0268980:CDS | 20.0% |
| !!! | TCACGATACTTTTTATTTAT+TGG | - | chr2_2:70466471-70466490 | Msa0268980:CDS | 20.0% |
| !!! | GAAATCTTCTTTTTGAAAAA+CGG | + | chr2_2:70466701-70466720 | None:intergenic | 20.0% |
| !!! | CAAAACAAAATACTTTTTCT+TGG | + | chr2_2:70467090-70467109 | None:intergenic | 20.0% |
| !!! | CAAGAAAAAGTATTTTGTTT+TGG | - | chr2_2:70467088-70467107 | Msa0268980:intron | 20.0% |
| !!! | AAAAGTATTTTGTTTTGGTT+CGG | - | chr2_2:70467093-70467112 | Msa0268980:intron | 20.0% |
| !! | ACTAATAGAAAACTTTTTGG+TGG | + | chr2_2:70465996-70466015 | None:intergenic | 25.0% |
| ! | TACCAAAAACAAGTCATTTA+TGG | - | chr2_2:70466195-70466214 | Msa0268980:CDS | 25.0% |
| !!! | ATCCATAAATGACTTGTTTT+TGG | + | chr2_2:70466200-70466219 | None:intergenic | 25.0% |
| !! | ACTTTTGGTACAAAAGAAAA+GGG | - | chr2_2:70466376-70466395 | Msa0268980:CDS | 25.0% |
| !!! | AAATCTATTTCTTCGTCTTT+TGG | + | chr2_2:70466497-70466516 | None:intergenic | 25.0% |
| ! | CTATGAAAAATACCATTGAT+AGG | + | chr2_2:70466592-70466611 | None:intergenic | 25.0% |
| !! | ATCTACTTTGATTGGTATTT+TGG | + | chr2_2:70466753-70466772 | None:intergenic | 25.0% |
| ! | AAAAATCGATCTACTTTGAT+TGG | + | chr2_2:70466761-70466780 | None:intergenic | 25.0% |
| ! | CTTCTTATATTGAAAGTGAT+TGG | + | chr2_2:70466865-70466884 | None:intergenic | 25.0% |
| !! | ACTAATAGAAAACTTTTTGG+TGG | + | chr2_2:70465996-70466015 | None:intergenic | 25.0% |
| ! | TACCAAAAACAAGTCATTTA+TGG | - | chr2_2:70466195-70466214 | Msa0268980:CDS | 25.0% |
| !!! | ATCCATAAATGACTTGTTTT+TGG | + | chr2_2:70466200-70466219 | None:intergenic | 25.0% |
| !! | ACTTTTGGTACAAAAGAAAA+GGG | - | chr2_2:70466376-70466395 | Msa0268980:CDS | 25.0% |
| !!! | AAATCTATTTCTTCGTCTTT+TGG | + | chr2_2:70466497-70466516 | None:intergenic | 25.0% |
| ! | CTATGAAAAATACCATTGAT+AGG | + | chr2_2:70466592-70466611 | None:intergenic | 25.0% |
| !! | ATCTACTTTGATTGGTATTT+TGG | + | chr2_2:70466753-70466772 | None:intergenic | 25.0% |
| ! | AAAAATCGATCTACTTTGAT+TGG | + | chr2_2:70466761-70466780 | None:intergenic | 25.0% |
| ! | CTTCTTATATTGAAAGTGAT+TGG | + | chr2_2:70466865-70466884 | None:intergenic | 25.0% |
| CATATTTATTCTGACTCAGA+AGG | - | chr2_2:70466107-70466126 | Msa0268980:CDS | 30.0% | |
| TATACAAAAATTCGGATGCA+TGG | + | chr2_2:70466160-70466179 | None:intergenic | 30.0% | |
| AGTCATTTATGGATCTTATC+AGG | - | chr2_2:70466206-70466225 | Msa0268980:CDS | 30.0% | |
| !! | AACATTGATTCTCTTTCTAC+TGG | - | chr2_2:70466286-70466305 | Msa0268980:CDS | 30.0% |
| ! | GACTTTTGGTACAAAAGAAA+AGG | - | chr2_2:70466375-70466394 | Msa0268980:CDS | 30.0% |
| ! | CTTTTGGTACAAAAGAAAAG+GGG | - | chr2_2:70466377-70466396 | Msa0268980:CDS | 30.0% |
| TACGGATCATTCTCATTTAA+TGG | - | chr2_2:70466435-70466454 | Msa0268980:CDS | 30.0% | |
| !! | AAAGTATCGTGAAAAATAGC+AGG | + | chr2_2:70466463-70466482 | None:intergenic | 30.0% |
| TCCATTGAAATACCTATCAA+TGG | - | chr2_2:70466577-70466596 | Msa0268980:CDS | 30.0% | |
| ACCATTGATAGGTATTTCAA+TGG | + | chr2_2:70466581-70466600 | None:intergenic | 30.0% | |
| TACCATTATGGAAGAAGATT+CGG | + | chr2_2:70466812-70466831 | None:intergenic | 30.0% | |
| AATCTTCTTCCATAATGGTA+CGG | - | chr2_2:70466812-70466831 | Msa0268980:intron | 30.0% | |
| ACTATTATTCCGTACCATTA+TGG | + | chr2_2:70466824-70466843 | None:intergenic | 30.0% | |
| AATAATAGTCTCGTTGGAAT+AGG | - | chr2_2:70466835-70466854 | Msa0268980:intron | 30.0% | |
| TTCAATATAAGAAGTCGAGT+AGG | - | chr2_2:70466871-70466890 | Msa0268980:CDS | 30.0% | |
| !!! | TCCATTTTTTTTTACCGTTC+CGG | + | chr2_2:70467016-70467035 | None:intergenic | 30.0% |
| GAACGGTAAAAAAAAATGGA+AGG | - | chr2_2:70467016-70467035 | Msa0268980:CDS | 30.0% | |
| ATAATTGGATCTATGTCCAA+TGG | - | chr2_2:70467054-70467073 | Msa0268980:intron | 30.0% | |
| CATATTTATTCTGACTCAGA+AGG | - | chr2_2:70466107-70466126 | Msa0268980:CDS | 30.0% | |
| TATACAAAAATTCGGATGCA+TGG | + | chr2_2:70466160-70466179 | None:intergenic | 30.0% | |
| AGTCATTTATGGATCTTATC+AGG | - | chr2_2:70466206-70466225 | Msa0268980:CDS | 30.0% | |
| !! | AACATTGATTCTCTTTCTAC+TGG | - | chr2_2:70466286-70466305 | Msa0268980:CDS | 30.0% |
| ! | GACTTTTGGTACAAAAGAAA+AGG | - | chr2_2:70466375-70466394 | Msa0268980:CDS | 30.0% |
| ! | CTTTTGGTACAAAAGAAAAG+GGG | - | chr2_2:70466377-70466396 | Msa0268980:CDS | 30.0% |
| TACGGATCATTCTCATTTAA+TGG | - | chr2_2:70466435-70466454 | Msa0268980:CDS | 30.0% | |
| !! | AAAGTATCGTGAAAAATAGC+AGG | + | chr2_2:70466463-70466482 | None:intergenic | 30.0% |
| TCCATTGAAATACCTATCAA+TGG | - | chr2_2:70466577-70466596 | Msa0268980:CDS | 30.0% | |
| ACCATTGATAGGTATTTCAA+TGG | + | chr2_2:70466581-70466600 | None:intergenic | 30.0% | |
| TACCATTATGGAAGAAGATT+CGG | + | chr2_2:70466812-70466831 | None:intergenic | 30.0% | |
| AATCTTCTTCCATAATGGTA+CGG | - | chr2_2:70466812-70466831 | Msa0268980:intron | 30.0% | |
| ACTATTATTCCGTACCATTA+TGG | + | chr2_2:70466824-70466843 | None:intergenic | 30.0% | |
| AATAATAGTCTCGTTGGAAT+AGG | - | chr2_2:70466835-70466854 | Msa0268980:intron | 30.0% | |
| TTCAATATAAGAAGTCGAGT+AGG | - | chr2_2:70466871-70466890 | Msa0268980:CDS | 30.0% | |
| !!! | TCCATTTTTTTTTACCGTTC+CGG | + | chr2_2:70467016-70467035 | None:intergenic | 30.0% |
| GAACGGTAAAAAAAAATGGA+AGG | - | chr2_2:70467016-70467035 | Msa0268980:CDS | 30.0% | |
| ATAATTGGATCTATGTCCAA+TGG | - | chr2_2:70467054-70467073 | Msa0268980:intron | 30.0% | |
| !! | CAATCCATTTTTACTTCGCA+AGG | - | chr2_2:70466249-70466268 | Msa0268980:CDS | 35.0% |
| TGATCCTTGCGAAGTAAAAA+TGG | + | chr2_2:70466256-70466275 | None:intergenic | 35.0% | |
| TCTTTCCTTCTTGAATCGAT+TGG | + | chr2_2:70466531-70466550 | None:intergenic | 35.0% | |
| ATTTCAATGGAAACACCAGA+AGG | + | chr2_2:70466568-70466587 | None:intergenic | 35.0% | |
| GAATTCTGTCTTCTGTATTG+AGG | + | chr2_2:70466643-70466662 | None:intergenic | 35.0% | |
| CAATACAGAAGACAGAATTC+AGG | - | chr2_2:70466643-70466662 | Msa0268980:CDS | 35.0% | |
| ! | GAAGATTTCATTGAGTATCG+AGG | - | chr2_2:70466712-70466731 | Msa0268980:CDS | 35.0% |
| GGTAAAATATGCACTTCTTC+GGG | + | chr2_2:70466790-70466809 | None:intergenic | 35.0% | |
| GGGTAAAATATGCACTTCTT+CGG | + | chr2_2:70466791-70466810 | None:intergenic | 35.0% | |
| ACCATTATGGAAGAAGATTC+GGG | + | chr2_2:70466811-70466830 | None:intergenic | 35.0% | |
| AATATAAGAAGTCGAGTAGG+CGG | - | chr2_2:70466874-70466893 | Msa0268980:CDS | 35.0% | |
| ! | TCTGGAAATATCCATTTTCC+CGG | - | chr2_2:70466946-70466965 | Msa0268980:CDS | 35.0% |
| TATCAAGATAGAACTGTGTC+GGG | + | chr2_2:70466989-70467008 | None:intergenic | 35.0% | |
| GTATCAAGATAGAACTGTGT+CGG | + | chr2_2:70466990-70467009 | None:intergenic | 35.0% | |
| !!! | CCATTTTTTTTTACCGTTCC+GGG | + | chr2_2:70467015-70467034 | None:intergenic | 35.0% |
| !! | CAATCCATTTTTACTTCGCA+AGG | - | chr2_2:70466249-70466268 | Msa0268980:CDS | 35.0% |
| TGATCCTTGCGAAGTAAAAA+TGG | + | chr2_2:70466256-70466275 | None:intergenic | 35.0% | |
| TCTTTCCTTCTTGAATCGAT+TGG | + | chr2_2:70466531-70466550 | None:intergenic | 35.0% | |
| ATTTCAATGGAAACACCAGA+AGG | + | chr2_2:70466568-70466587 | None:intergenic | 35.0% | |
| GAATTCTGTCTTCTGTATTG+AGG | + | chr2_2:70466643-70466662 | None:intergenic | 35.0% | |
| CAATACAGAAGACAGAATTC+AGG | - | chr2_2:70466643-70466662 | Msa0268980:CDS | 35.0% | |
| ! | GAAGATTTCATTGAGTATCG+AGG | - | chr2_2:70466712-70466731 | Msa0268980:CDS | 35.0% |
| GGTAAAATATGCACTTCTTC+GGG | + | chr2_2:70466790-70466809 | None:intergenic | 35.0% | |
| GGGTAAAATATGCACTTCTT+CGG | + | chr2_2:70466791-70466810 | None:intergenic | 35.0% | |
| ACCATTATGGAAGAAGATTC+GGG | + | chr2_2:70466811-70466830 | None:intergenic | 35.0% | |
| AATATAAGAAGTCGAGTAGG+CGG | - | chr2_2:70466874-70466893 | Msa0268980:CDS | 35.0% | |
| ! | TCTGGAAATATCCATTTTCC+CGG | - | chr2_2:70466946-70466965 | Msa0268980:CDS | 35.0% |
| TATCAAGATAGAACTGTGTC+GGG | + | chr2_2:70466989-70467008 | None:intergenic | 35.0% | |
| GTATCAAGATAGAACTGTGT+CGG | + | chr2_2:70466990-70467009 | None:intergenic | 35.0% | |
| !!! | CCATTTTTTTTTACCGTTCC+GGG | + | chr2_2:70467015-70467034 | None:intergenic | 35.0% |
| ! | TAAAAGTATATGTTCCCGCG+CGG | + | chr2_2:70466064-70466083 | None:intergenic | 40.0% |
| CCTTCTTGAATCGATTGGAA+TGG | + | chr2_2:70466526-70466545 | None:intergenic | 40.0% | |
| ! | CCATTCCAATCGATTCAAGA+AGG | - | chr2_2:70466523-70466542 | Msa0268980:CDS | 40.0% |
| ACCCGAATCTTCTTCCATAA+TGG | - | chr2_2:70466807-70466826 | Msa0268980:intron | 40.0% | |
| GTACGGAATAATAGTCTCGT+TGG | - | chr2_2:70466829-70466848 | Msa0268980:intron | 40.0% | |
| AGTTCTATCTTGATACCACC+CGG | - | chr2_2:70466994-70467013 | Msa0268980:CDS | 40.0% | |
| !!! | TTTTTTTTTACCGTTCCGGG+TGG | + | chr2_2:70467012-70467031 | None:intergenic | 40.0% |
| CCCGGAACGGTAAAAAAAAA+TGG | - | chr2_2:70467012-70467031 | Msa0268980:CDS | 40.0% | |
| ! | TCTTGGTAGTTGTGATCCAT+TGG | + | chr2_2:70467073-70467092 | None:intergenic | 40.0% |
| ! | TAAAAGTATATGTTCCCGCG+CGG | + | chr2_2:70466064-70466083 | None:intergenic | 40.0% |
| CCTTCTTGAATCGATTGGAA+TGG | + | chr2_2:70466526-70466545 | None:intergenic | 40.0% | |
| ! | CCATTCCAATCGATTCAAGA+AGG | - | chr2_2:70466523-70466542 | Msa0268980:CDS | 40.0% |
| ACCCGAATCTTCTTCCATAA+TGG | - | chr2_2:70466807-70466826 | Msa0268980:intron | 40.0% | |
| GTACGGAATAATAGTCTCGT+TGG | - | chr2_2:70466829-70466848 | Msa0268980:intron | 40.0% | |
| AGTTCTATCTTGATACCACC+CGG | - | chr2_2:70466994-70467013 | Msa0268980:CDS | 40.0% | |
| !!! | TTTTTTTTTACCGTTCCGGG+TGG | + | chr2_2:70467012-70467031 | None:intergenic | 40.0% |
| CCCGGAACGGTAAAAAAAAA+TGG | - | chr2_2:70467012-70467031 | Msa0268980:CDS | 40.0% | |
| ! | TCTTGGTAGTTGTGATCCAT+TGG | + | chr2_2:70467073-70467092 | None:intergenic | 40.0% |
| ACTCAGAAGGCGAAATGCAT+TGG | - | chr2_2:70466120-70466139 | Msa0268980:CDS | 45.0% | |
| TTCGGATGCATGGTACACAT+CGG | + | chr2_2:70466150-70466169 | None:intergenic | 45.0% | |
| TCTTATCAGGAAAGTCGTGC+AGG | - | chr2_2:70466219-70466238 | Msa0268980:CDS | 45.0% | |
| AACGAACTAATGCGACCTTC+TGG | - | chr2_2:70466550-70466569 | Msa0268980:CDS | 45.0% | |
| ! | ATATCCATTTTCCCGGAGAG+AGG | - | chr2_2:70466953-70466972 | Msa0268980:CDS | 45.0% |
| ! | TATCCATTTTCCCGGAGAGA+GGG | - | chr2_2:70466954-70466973 | Msa0268980:CDS | 45.0% |
| GATATCTTATCCCTCTCTCC+GGG | + | chr2_2:70466967-70466986 | None:intergenic | 45.0% | |
| GGATATCTTATCCCTCTCTC+CGG | + | chr2_2:70466968-70466987 | None:intergenic | 45.0% | |
| TATCTTGATACCACCCGGAA+CGG | - | chr2_2:70466999-70467018 | Msa0268980:CDS | 45.0% | |
| ACTCAGAAGGCGAAATGCAT+TGG | - | chr2_2:70466120-70466139 | Msa0268980:CDS | 45.0% | |
| TTCGGATGCATGGTACACAT+CGG | + | chr2_2:70466150-70466169 | None:intergenic | 45.0% | |
| TCTTATCAGGAAAGTCGTGC+AGG | - | chr2_2:70466219-70466238 | Msa0268980:CDS | 45.0% | |
| AACGAACTAATGCGACCTTC+TGG | - | chr2_2:70466550-70466569 | Msa0268980:CDS | 45.0% | |
| ! | ATATCCATTTTCCCGGAGAG+AGG | - | chr2_2:70466953-70466972 | Msa0268980:CDS | 45.0% |
| ! | TATCCATTTTCCCGGAGAGA+GGG | - | chr2_2:70466954-70466973 | Msa0268980:CDS | 45.0% |
| GATATCTTATCCCTCTCTCC+GGG | + | chr2_2:70466967-70466986 | None:intergenic | 45.0% | |
| GGATATCTTATCCCTCTCTC+CGG | + | chr2_2:70466968-70466987 | None:intergenic | 45.0% | |
| TATCTTGATACCACCCGGAA+CGG | - | chr2_2:70466999-70467018 | Msa0268980:CDS | 45.0% | |
| AAGAAGTCGAGTAGGCGGAT+TGG | - | chr2_2:70466879-70466898 | Msa0268980:CDS | 50.0% | |
| TATCCCTCTCTCCGGGAAAA+TGG | + | chr2_2:70466960-70466979 | None:intergenic | 50.0% | |
| AAGAAGTCGAGTAGGCGGAT+TGG | - | chr2_2:70466879-70466898 | Msa0268980:CDS | 50.0% | |
| TATCCCTCTCTCCGGGAAAA+TGG | + | chr2_2:70466960-70466979 | None:intergenic | 50.0% | |
| AGTGATTGCTGAGATCCGCG+CGG | - | chr2_2:70466046-70466065 | Msa0268980:CDS | 55.0% | |
| AGTGATTGCTGAGATCCGCG+CGG | - | chr2_2:70466046-70466065 | Msa0268980:CDS | 55.0% | |
| GTGATTGCTGAGATCCGCGC+GGG | - | chr2_2:70466047-70466066 | Msa0268980:CDS | 60.0% | |
| GTGATTGCTGAGATCCGCGC+GGG | - | chr2_2:70466047-70466066 | Msa0268980:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 70465913 | 70467122 | 70465913 | ID=Msa0268980;Name=Msa0268980 |
| chr2_2 | mRNA | 70465913 | 70467122 | 70465913 | ID=Msa0268980-mRNA-1;Parent=Msa0268980;Name=Msa0268980-mRNA-1;_AED=0.46;_eAED=0.50;_QI=0|0|0|1|0|0|4|0|366 |
| chr2_2 | exon | 70467102 | 70467122 | 70467102 | ID=Msa0268980-mRNA-1:exon:22666;Parent=Msa0268980-mRNA-1 |
| chr2_2 | exon | 70467085 | 70467092 | 70467085 | ID=Msa0268980-mRNA-1:exon:22665;Parent=Msa0268980-mRNA-1 |
| chr2_2 | exon | 70466851 | 70467070 | 70466851 | ID=Msa0268980-mRNA-1:exon:22664;Parent=Msa0268980-mRNA-1 |
| chr2_2 | exon | 70465913 | 70466764 | 70465913 | ID=Msa0268980-mRNA-1:exon:22663;Parent=Msa0268980-mRNA-1 |
| chr2_2 | CDS | 70467102 | 70467122 | 70467102 | ID=Msa0268980-mRNA-1:cds;Parent=Msa0268980-mRNA-1 |
| chr2_2 | CDS | 70467085 | 70467092 | 70467085 | ID=Msa0268980-mRNA-1:cds;Parent=Msa0268980-mRNA-1 |
| chr2_2 | CDS | 70466851 | 70467070 | 70466851 | ID=Msa0268980-mRNA-1:cds;Parent=Msa0268980-mRNA-1 |
| chr2_2 | CDS | 70465913 | 70466764 | 70465913 | ID=Msa0268980-mRNA-1:cds;Parent=Msa0268980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
