Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269190 | XP_003590834.1 | 98.020 | 202 | 4 | 0 | 1 | 202 | 1 | 202 | 3.03e-146 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269190 | sp|O22797|GLTP1_ARATH | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.49e-115 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269190 | B7FNC0 | 98.020 | 202 | 4 | 0 | 1 | 202 | 1 | 202 | 1.45e-146 | 415 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0269190 | Msa1366170 | 0.877365 | 6.660521e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269190 | MtrunA17_Chr1g0187451 | 98.020 | 202 | 4 | 0 | 1 | 202 | 1 | 202 | 2.79e-150 | 415 |
| Msa0269190 | MtrunA17_Chr1g0166501 | 81.683 | 202 | 37 | 0 | 1 | 202 | 1 | 202 | 4.75e-126 | 353 |
| Msa0269190 | MtrunA17_Chr1g0187431 | 82.119 | 151 | 14 | 1 | 46 | 196 | 1 | 138 | 1.18e-86 | 251 |
| Msa0269190 | MtrunA17_Chr1g0159211 | 34.921 | 189 | 118 | 1 | 19 | 202 | 35 | 223 | 1.11e-40 | 137 |
| Msa0269190 | MtrunA17_Chr3g0126121 | 37.968 | 187 | 111 | 3 | 21 | 202 | 36 | 222 | 5.06e-40 | 136 |
| Msa0269190 | MtrunA17_Chr1g0159221 | 34.574 | 188 | 119 | 1 | 19 | 202 | 36 | 223 | 2.48e-39 | 134 |
| Msa0269190 | MtrunA17_Chr1g0187441 | 73.469 | 49 | 13 | 0 | 1 | 49 | 16 | 64 | 1.30e-20 | 81.6 |
| Msa0269190 | MtrunA17_Chr2g0292061 | 23.841 | 151 | 111 | 1 | 18 | 168 | 96 | 242 | 6.11e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269190 | AT2G33470.2 | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.53e-116 | 329 |
| Msa0269190 | AT2G33470.1 | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.53e-116 | 329 |
| Msa0269190 | AT1G21360.1 | 35.979 | 189 | 117 | 1 | 17 | 201 | 34 | 222 | 1.31e-37 | 130 |
| Msa0269190 | AT3G21260.3 | 34.444 | 180 | 114 | 1 | 26 | 201 | 53 | 232 | 9.17e-36 | 125 |
| Msa0269190 | AT1G21360.2 | 35.625 | 160 | 99 | 1 | 46 | 201 | 1 | 160 | 4.88e-30 | 108 |
| Msa0269190 | AT1G21360.3 | 37.879 | 132 | 82 | 0 | 17 | 148 | 34 | 165 | 1.95e-25 | 98.2 |
| Msa0269190 | AT3G21260.2 | 33.333 | 147 | 94 | 1 | 59 | 201 | 2 | 148 | 3.74e-25 | 95.9 |
| Msa0269190 | AT3G21260.1 | 32.857 | 140 | 90 | 1 | 66 | 201 | 4 | 143 | 2.62e-23 | 91.3 |
Find 67 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTATCATGTCCATTATTT+TGG | 0.137452 | 2_2:-70576658 | None:intergenic |
| TGAAGAGAATCACAAGTTTC+TGG | 0.197925 | 2_2:+70576058 | Msa0269190:CDS |
| AATTCTGTCACAGCCTTTCT+TGG | 0.198191 | 2_2:+70573733 | Msa0269190:CDS |
| CTTCTTTAGAGTCTTGTTAT+AGG | 0.217183 | 2_2:-70575810 | None:intergenic |
| ACTATACAGGCAGTTGAATT+TGG | 0.221005 | 2_2:-70574977 | None:intergenic |
| CTTCAGAGCAATGGATTTCT+TGG | 0.230093 | 2_2:+70575724 | Msa0269190:intron |
| CAATAGAGAAACAGAGTTTA+AGG | 0.233339 | 2_2:-70576631 | None:intergenic |
| GGTTGGATTAGATAAATATT+TGG | 0.236982 | 2_2:-70574956 | None:intergenic |
| CTTAAACTCTGTTTCTCTAT+TGG | 0.265979 | 2_2:+70576632 | Msa0269190:three_prime_UTR |
| TCTATTGGCATCCAAAATAA+TGG | 0.272986 | 2_2:+70576647 | Msa0269190:three_prime_UTR |
| ATTCTTATGGCAGATAAGTT+TGG | 0.303743 | 2_2:+70574524 | Msa0269190:intron |
| AAACATATACTTCCTGTTAT+AGG | 0.315283 | 2_2:+70573764 | Msa0269190:CDS |
| TCCATGAATTTCTTCCTATC+AGG | 0.324564 | 2_2:-70575966 | None:intergenic |
| GAAACTTGTGATTCTCTTCA+AGG | 0.338646 | 2_2:-70576055 | None:intergenic |
| CAGGCGCAAAACAAGTTTAT+AGG | 0.344174 | 2_2:-70572680 | None:intergenic |
| TATTGAACTATATTTGCATT+TGG | 0.369916 | 2_2:+70576783 | Msa0269190:three_prime_UTR |
| GAAATTCATGGAGGTGATAC+AGG | 0.370152 | 2_2:+70575977 | Msa0269190:CDS |
| ATTCAACTGCCTGTATAGTT+TGG | 0.375332 | 2_2:+70574981 | Msa0269190:CDS |
| AAAGCATGTAAAGTCTGAAC+AGG | 0.386552 | 2_2:+70573706 | Msa0269190:CDS |
| GAGAAGTCCATTGGTACAAC+TGG | 0.387611 | 2_2:-70575043 | None:intergenic |
| CTCTAAAGAAGTGGCATGGC+TGG | 0.390523 | 2_2:+70575822 | Msa0269190:CDS |
| ATGTTGAGACAAATGCAATT+TGG | 0.405267 | 2_2:+70576742 | Msa0269190:three_prime_UTR |
| ATTTGGATTGGATGAATTGA+AGG | 0.405788 | 2_2:+70576530 | Msa0269190:CDS |
| CCGCATGCTCAATTAAGTTT+CGG | 0.407021 | 2_2:-70575757 | None:intergenic |
| AACGTATAAAACAATCAAAA+AGG | 0.407093 | 2_2:+70572625 | Msa0269190:five_prime_UTR |
| ATAGAGCAATTACCTATAAC+AGG | 0.408205 | 2_2:-70573776 | None:intergenic |
| ATGAATTGAAGGCTTCATAA+AGG | 0.410184 | 2_2:+70576541 | Msa0269190:CDS |
| TGCAAGAGCCATTCATCAAC+AGG | 0.414077 | 2_2:-70576583 | None:intergenic |
| GAGACAAATGCAATTTGGTT+TGG | 0.428004 | 2_2:+70576747 | Msa0269190:three_prime_UTR |
| CTTCATAAAGGATGGATTCA+TGG | 0.431048 | 2_2:+70576553 | Msa0269190:exon |
| TACAGGCAGTTGAATTTGGT+TGG | 0.435495 | 2_2:-70574973 | None:intergenic |
| GTTGTACCAATGGACTTCTC+TGG | 0.441414 | 2_2:+70575046 | Msa0269190:CDS |
| GGCACAGGCTCGATTTGGAT+TGG | 0.445538 | 2_2:+70576518 | Msa0269190:intron |
| TTTGCGCCTGCGATTGTTGT+CGG | 0.452135 | 2_2:+70572693 | Msa0269190:five_prime_UTR |
| TGACATAGGTGGTAATATAT+CGG | 0.452189 | 2_2:+70574571 | Msa0269190:CDS |
| CAGAGCAATGGATTTCTTGG+TGG | 0.470381 | 2_2:+70575727 | Msa0269190:intron |
| CTACTTGTACCAAACTATAC+AGG | 0.482133 | 2_2:-70574990 | None:intergenic |
| TTGTGATTCTCTTCAAGGAA+AGG | 0.512151 | 2_2:-70576050 | None:intergenic |
| CGATGAAGCTTGCTCCTGAT+AGG | 0.512345 | 2_2:+70575952 | Msa0269190:CDS |
| CAGAAAACAAGTCATTTGTA+AGG | 0.518851 | 2_2:-70576706 | None:intergenic |
| ATGGACTTCTCTGGCTTACA+AGG | 0.522903 | 2_2:+70575055 | Msa0269190:CDS |
| TCCTGATAGGAAGAAATTCA+TGG | 0.526707 | 2_2:+70575965 | Msa0269190:CDS |
| ATTGAAGGCTTCATAAAGGA+TGG | 0.526907 | 2_2:+70576545 | Msa0269190:exon |
| CTTGTTATAGGAATCAGTAC+AGG | 0.533723 | 2_2:-70575798 | None:intergenic |
| ATGTAAAATCTTCAGAGCAA+TGG | 0.543737 | 2_2:+70575715 | Msa0269190:intron |
| CACCTATGTCAGATTTGACA+AGG | 0.546300 | 2_2:-70574559 | None:intergenic |
| TCATACTCGTAGTGCCGTCG+TGG | 0.549745 | 2_2:+70572566 | Msa0269190:five_prime_UTR |
| CCGAAACTTAATTGAGCATG+CGG | 0.552124 | 2_2:+70575757 | Msa0269190:CDS |
| TGTTTGCACACATCCAAGAA+AGG | 0.556146 | 2_2:-70573746 | None:intergenic |
| ACTTAATTGAGCATGCGGAT+TGG | 0.558353 | 2_2:+70575762 | Msa0269190:CDS |
| ATAACAAGACTCTAAAGAAG+TGG | 0.561369 | 2_2:+70575813 | Msa0269190:CDS |
| GGTACAACTGGATGATGCCT+TGG | 0.564664 | 2_2:-70575031 | None:intergenic |
| GACAGAAGCCTGTTGATGAA+TGG | 0.565245 | 2_2:+70576575 | Msa0269190:three_prime_UTR |
| GCATCATCCAGTTGTACCAA+TGG | 0.585383 | 2_2:+70575036 | Msa0269190:CDS |
| AGTTGAAACTAAAACTGCCA+AGG | 0.615757 | 2_2:+70575014 | Msa0269190:CDS |
| TGTAAGCCAGAGAAGTCCAT+TGG | 0.619617 | 2_2:-70575052 | None:intergenic |
| CATACTCGTAGTGCCGTCGT+GGG | 0.622239 | 2_2:+70572567 | Msa0269190:five_prime_UTR |
| ATGGAGGTGATACAGGGAGA+TGG | 0.623186 | 2_2:+70575984 | Msa0269190:CDS |
| ACCCTTGTCAAATCTGACAT+AGG | 0.626109 | 2_2:+70574557 | Msa0269190:CDS |
| CTGAGACCGACAACAATCGC+AGG | 0.626473 | 2_2:-70572699 | None:intergenic |
| AAATTCATGGAGGTGATACA+GGG | 0.636214 | 2_2:+70575978 | Msa0269190:CDS |
| AAGACTCTAAAGAAGTGGCA+TGG | 0.651111 | 2_2:+70575818 | Msa0269190:CDS |
| CTTGTCAAATCTGACATAGG+TGG | 0.659236 | 2_2:+70574560 | Msa0269190:CDS |
| TTGCAAAGTGATTCCCACGA+CGG | 0.679621 | 2_2:-70572580 | None:intergenic |
| AAGCATGTAAAGTCTGAACA+GGG | 0.684936 | 2_2:+70573707 | Msa0269190:CDS |
| ACCTATGTCAGATTTGACAA+GGG | 0.696405 | 2_2:-70574558 | None:intergenic |
| TGATAGGAAGAAATTCATGG+AGG | 0.764708 | 2_2:+70575968 | Msa0269190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAAATCATTTTAATTTTA+AGG | + | chr2_2:70574260-70574279 | Msa0269190:intron | 10.0% |
| !! | AAAAAAAACTTAAATTGTAT+TGG | + | chr2_2:70574865-70574884 | Msa0269190:intron | 10.0% |
| !! | TAAAGATATTAATTTCTTAA+AGG | + | chr2_2:70576467-70576486 | Msa0269190:intron | 10.0% |
| !! | AATTCTAATTGTTTACTTAA+TGG | + | chr2_2:70572806-70572825 | Msa0269190:intron | 15.0% |
| !! | AATATATCATATATATGTGT+AGG | + | chr2_2:70573260-70573279 | Msa0269190:intron | 15.0% |
| !! | ATATATCATATATATGTGTA+GGG | + | chr2_2:70573261-70573280 | Msa0269190:intron | 15.0% |
| !! | GGAATATTAGATTAAATTTA+TGG | - | chr2_2:70573900-70573919 | None:intergenic | 15.0% |
| !! | AATCATATGAGATATATATA+CGG | - | chr2_2:70574635-70574654 | None:intergenic | 15.0% |
| !!! | TTTTCAAATTCATATTTAGT+TGG | + | chr2_2:70574760-70574779 | Msa0269190:intron | 15.0% |
| !! | TTCGATAAAAAATATAAGTT+TGG | - | chr2_2:70574846-70574865 | None:intergenic | 15.0% |
| !! | AAATAAAGATTAGGAAAAAA+AGG | + | chr2_2:70575217-70575236 | Msa0269190:intron | 15.0% |
| !! | AATACTAACAAATTACATAA+AGG | - | chr2_2:70575666-70575685 | None:intergenic | 15.0% |
| !! | AGAAATTAATATCTTTATCA+TGG | - | chr2_2:70576464-70576483 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAAAAAGAATAAG+TGG | + | chr2_2:70572536-70572555 | Msa0269190:five_prime_UTR | 20.0% |
| !! | AACGTATAAAACAATCAAAA+AGG | + | chr2_2:70572625-70572644 | Msa0269190:five_prime_UTR | 20.0% |
| !! | AAAAAAATTGCAATTGAGAA+AGG | - | chr2_2:70572768-70572787 | None:intergenic | 20.0% |
| !! | ATTAGAATTGAACAATTGAA+AGG | - | chr2_2:70572795-70572814 | None:intergenic | 20.0% |
| !!! | TTTGAAAAGTTGTGAAATTT+TGG | + | chr2_2:70572844-70572863 | Msa0269190:intron | 20.0% |
| !!! | AATTTTGGAAAATTAGTTCA+TGG | + | chr2_2:70572859-70572878 | Msa0269190:intron | 20.0% |
| !!! | ATTTTGGAAAATTAGTTCAT+GGG | + | chr2_2:70572860-70572879 | Msa0269190:intron | 20.0% |
| !! | AAAATCAAAACTTTACTGAA+AGG | - | chr2_2:70572931-70572950 | None:intergenic | 20.0% |
| !! | AACTATAGTTAAATCATGTA+AGG | + | chr2_2:70573021-70573040 | Msa0269190:intron | 20.0% |
| !! | TGCATCAAAATCTAAAAATT+AGG | - | chr2_2:70573137-70573156 | None:intergenic | 20.0% |
| !! | TATTAGCTAATCAAAAAGAA+AGG | + | chr2_2:70573237-70573256 | Msa0269190:intron | 20.0% |
| !!! | TTTAACTTCATTAGATCTTT+TGG | - | chr2_2:70573409-70573428 | None:intergenic | 20.0% |
| !! | TATGCATTTGATTATTCAAA+CGG | - | chr2_2:70573858-70573877 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTTTAGCATGTA+TGG | + | chr2_2:70574088-70574107 | Msa0269190:intron | 20.0% |
| !!! | CATGTTTTAATGTACAAATT+TGG | + | chr2_2:70574111-70574130 | Msa0269190:intron | 20.0% |
| !! | TAAGGAAATATTTCATTAAG+AGG | + | chr2_2:70574278-70574297 | Msa0269190:intron | 20.0% |
| !! | AATATTTCATTAAGAGGAAA+AGG | + | chr2_2:70574284-70574303 | Msa0269190:intron | 20.0% |
| !!! | TGTATGTTTTTGATAGAAAT+GGG | - | chr2_2:70574334-70574353 | None:intergenic | 20.0% |
| !! | TGATACAAGTAATCATATTA+TGG | - | chr2_2:70574484-70574503 | None:intergenic | 20.0% |
| !! | ATCATATGAGATATATATAC+GGG | - | chr2_2:70574634-70574653 | None:intergenic | 20.0% |
| !!! | ACTACATTTTATAGAACTTT+TGG | + | chr2_2:70574807-70574826 | Msa0269190:intron | 20.0% |
| !!! | TTTTTCTTCAATTTATGTTG+AGG | + | chr2_2:70575561-70575580 | Msa0269190:intron | 20.0% |
| !!! | GGATTTGTTTTCTATTTTTT+AGG | + | chr2_2:70575871-70575890 | Msa0269190:intron | 20.0% |
| !! | TATTGAACTATATTTGCATT+TGG | + | chr2_2:70576783-70576802 | Msa0269190:three_prime_UTR | 20.0% |
| ! | GCTATAAGCATTATGTAAAA+TGG | + | chr2_2:70573087-70573106 | Msa0269190:intron | 25.0% |
| !!! | TTAGATTTTGATGCATTGTT+AGG | + | chr2_2:70573142-70573161 | Msa0269190:intron | 25.0% |
| ! | AAACACAGATCTTTCATAAA+TGG | - | chr2_2:70573190-70573209 | None:intergenic | 25.0% |
| ! | TAAAAGTTTAACCAGACTAA+GGG | - | chr2_2:70573596-70573615 | None:intergenic | 25.0% |
| ! | TGTATGTGTTTATTGAGTTA+TGG | + | chr2_2:70573618-70573637 | Msa0269190:intron | 25.0% |
| ! | AAACATATACTTCCTGTTAT+AGG | + | chr2_2:70573764-70573783 | Msa0269190:CDS | 25.0% |
| ! | ACATCAAAATGTCAAATCAA+AGG | - | chr2_2:70573804-70573823 | None:intergenic | 25.0% |
| !!! | TGATGTGTTTTATTTTGTGA+TGG | + | chr2_2:70573818-70573837 | Msa0269190:intron | 25.0% |
| !!! | GATGTGTTTTATTTTGTGAT+GGG | + | chr2_2:70573819-70573838 | Msa0269190:intron | 25.0% |
| ! | ATGCATTTGATTATTCAAAC+GGG | - | chr2_2:70573857-70573876 | None:intergenic | 25.0% |
| ! | ATACTAGCATGTTTAATGTA+AGG | + | chr2_2:70574044-70574063 | Msa0269190:intron | 25.0% |
| !! | TTGGTTCTTTAATTATACTG+TGG | + | chr2_2:70574130-70574149 | Msa0269190:intron | 25.0% |
| ! | AACTTAAATAACCAAGAAAC+AGG | - | chr2_2:70574240-70574259 | None:intergenic | 25.0% |
| !!! | GTGTATGTTTTTGATAGAAA+TGG | - | chr2_2:70574335-70574354 | None:intergenic | 25.0% |
| ! | GAAAAACACAAGATAAAAAC+AGG | - | chr2_2:70574609-70574628 | None:intergenic | 25.0% |
| !! | GGTTGGATTAGATAAATATT+TGG | - | chr2_2:70574959-70574978 | None:intergenic | 25.0% |
| ! | TAAGTTAAGCAGTAATTGTT+TGG | - | chr2_2:70575090-70575109 | None:intergenic | 25.0% |
| ! | ACTTATAATTCCTACTGTTA+TGG | + | chr2_2:70575105-70575124 | Msa0269190:intron | 25.0% |
| ! | GAACAGTCAAAATAAAGATT+AGG | + | chr2_2:70575208-70575227 | Msa0269190:intron | 25.0% |
| ! | TCTAGCTAAAATAATCCTTT+CGG | - | chr2_2:70575265-70575284 | None:intergenic | 25.0% |
| ! | TTTATTATCTTTCAGCTCAA+TGG | + | chr2_2:70575501-70575520 | Msa0269190:intron | 25.0% |
| ! | TTATAATTGAAGCTACTGAA+AGG | - | chr2_2:70575532-70575551 | None:intergenic | 25.0% |
| !!! | TTACTAATTTTGTTTTCCCA+TGG | + | chr2_2:70575610-70575629 | Msa0269190:intron | 25.0% |
| !! | GTAACAAATATTTTACCTAC+AGG | + | chr2_2:70575926-70575945 | Msa0269190:intron | 25.0% |
| !!! | AACTTAAAAGCTTGTTGTTT+TGG | + | chr2_2:70576497-70576516 | Msa0269190:intron | 25.0% |
| !! | TGTTATCATGTCCATTATTT+TGG | - | chr2_2:70576661-70576680 | None:intergenic | 25.0% |
| ! | ATTCAACTCATTTTCAGCTT+TGG | + | chr2_2:70572889-70572908 | Msa0269190:intron | 30.0% |
| ! | TGAGTTCTTTGATTTCCATT+TGG | + | chr2_2:70572986-70573005 | Msa0269190:intron | 30.0% |
| ! | TTTGATTTCCATTTGGTGAT+GGG | + | chr2_2:70572993-70573012 | Msa0269190:intron | 30.0% |
| ATATATATGTGTAGGGTGAT+AGG | + | chr2_2:70573268-70573287 | Msa0269190:intron | 30.0% | |
| !! | GAGTGGATTTATGTTGATTT+GGG | + | chr2_2:70573290-70573309 | Msa0269190:intron | 30.0% |
| !! | AGTGGATTTATGTTGATTTG+GGG | + | chr2_2:70573291-70573310 | Msa0269190:intron | 30.0% |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr2_2:70573317-70573336 | None:intergenic | 30.0% | |
| GTAAAAGTTTAACCAGACTA+AGG | - | chr2_2:70573597-70573616 | None:intergenic | 30.0% | |
| AGCAAAACACAAAAATGGAA+GGG | + | chr2_2:70573654-70573673 | Msa0269190:intron | 30.0% | |
| ATAGAGCAATTACCTATAAC+AGG | - | chr2_2:70573779-70573798 | None:intergenic | 30.0% | |
| ! | TTTGTGATGGGAATATAGAA+TGG | + | chr2_2:70573831-70573850 | Msa0269190:intron | 30.0% |
| TGCATAGACTTGAATTGATT+TGG | - | chr2_2:70573921-70573940 | None:intergenic | 30.0% | |
| ATGCAATATCTGTGCATTTA+TGG | + | chr2_2:70574161-70574180 | Msa0269190:intron | 30.0% | |
| AAATGTTCACATACTGCTAA+GGG | - | chr2_2:70574201-70574220 | None:intergenic | 30.0% | |
| AAAATGTTCACATACTGCTA+AGG | - | chr2_2:70574202-70574221 | None:intergenic | 30.0% | |
| !!! | ACTGTTTTTAACCTGTTTCT+TGG | + | chr2_2:70574226-70574245 | Msa0269190:intron | 30.0% |
| GAAAAGGAATAGAAAACAAG+AGG | + | chr2_2:70574300-70574319 | Msa0269190:intron | 30.0% | |
| TTGTGTTACAATTTGATGCT+TGG | + | chr2_2:70574441-70574460 | Msa0269190:intron | 30.0% | |
| ATTCTTATGGCAGATAAGTT+TGG | + | chr2_2:70574524-70574543 | Msa0269190:intron | 30.0% | |
| TGACATAGGTGGTAATATAT+CGG | + | chr2_2:70574571-70574590 | Msa0269190:CDS | 30.0% | |
| ATAGTATAGCCATATAACCA+TGG | - | chr2_2:70574709-70574728 | None:intergenic | 30.0% | |
| TAGTACAGAGTAAGAATAAG+TGG | - | chr2_2:70574908-70574927 | None:intergenic | 30.0% | |
| TCGGAATCTTATGCATATAT+TGG | - | chr2_2:70575246-70575265 | None:intergenic | 30.0% | |
| TATATGCATAAGATTCCGAA+AGG | + | chr2_2:70575247-70575266 | Msa0269190:intron | 30.0% | |
| ! | CCAGTATCATATTGCATTTT+TGG | - | chr2_2:70575338-70575357 | None:intergenic | 30.0% |
| CCAAAAATGCAATATGATAC+TGG | + | chr2_2:70575335-70575354 | Msa0269190:intron | 30.0% | |
| !!! | CTAATTGAGTCACTTTTTCA+AGG | + | chr2_2:70575453-70575472 | Msa0269190:intron | 30.0% |
| ! | AAACAAATAAGCATTTGCTG+AGG | - | chr2_2:70575643-70575662 | None:intergenic | 30.0% |
| ATGTAAAATCTTCAGAGCAA+TGG | + | chr2_2:70575715-70575734 | Msa0269190:intron | 30.0% | |
| !! | CTTCTTTAGAGTCTTGTTAT+AGG | - | chr2_2:70575813-70575832 | None:intergenic | 30.0% |
| ! | ATAACAAGACTCTAAAGAAG+TGG | + | chr2_2:70575813-70575832 | Msa0269190:CDS | 30.0% |
| TCATGTAGTATATGGTAACA+TGG | + | chr2_2:70575899-70575918 | Msa0269190:intron | 30.0% | |
| ATTGCTGACATTAATCTACA+AGG | + | chr2_2:70576118-70576137 | Msa0269190:intron | 30.0% | |
| CATGACACATTAATTGATCT+TGG | - | chr2_2:70576294-70576313 | None:intergenic | 30.0% | |
| ! | ATTTGGATTGGATGAATTGA+AGG | + | chr2_2:70576530-70576549 | Msa0269190:CDS | 30.0% |
| ATGAATTGAAGGCTTCATAA+AGG | + | chr2_2:70576541-70576560 | Msa0269190:CDS | 30.0% | |
| CAATAGAGAAACAGAGTTTA+AGG | - | chr2_2:70576634-70576653 | None:intergenic | 30.0% | |
| ! | CTTAAACTCTGTTTCTCTAT+TGG | + | chr2_2:70576632-70576651 | Msa0269190:three_prime_UTR | 30.0% |
| TCTATTGGCATCCAAAATAA+TGG | + | chr2_2:70576647-70576666 | Msa0269190:three_prime_UTR | 30.0% | |
| CAGAAAACAAGTCATTTGTA+AGG | - | chr2_2:70576709-70576728 | None:intergenic | 30.0% | |
| !!! | CAAATGACTTGTTTTCTGTT+TGG | + | chr2_2:70576711-70576730 | Msa0269190:three_prime_UTR | 30.0% |
| ATGTTGAGACAAATGCAATT+TGG | + | chr2_2:70576742-70576761 | Msa0269190:three_prime_UTR | 30.0% | |
| ! | CTTTGATTTCCATTTGGTGA+TGG | + | chr2_2:70572992-70573011 | Msa0269190:intron | 35.0% |
| ACAGATCTTTCATAAATGGC+AGG | - | chr2_2:70573186-70573205 | None:intergenic | 35.0% | |
| ! | GGAGTGGATTTATGTTGATT+TGG | + | chr2_2:70573289-70573308 | Msa0269190:intron | 35.0% |
| GCACAAGTGTTTATCATGAT+AGG | + | chr2_2:70573348-70573367 | Msa0269190:intron | 35.0% | |
| TGTGCAGCAAAACACAAAAA+TGG | + | chr2_2:70573649-70573668 | Msa0269190:intron | 35.0% | |
| CAGCAAAACACAAAAATGGA+AGG | + | chr2_2:70573653-70573672 | Msa0269190:intron | 35.0% | |
| AAAGCATGTAAAGTCTGAAC+AGG | + | chr2_2:70573706-70573725 | Msa0269190:CDS | 35.0% | |
| AAGCATGTAAAGTCTGAACA+GGG | + | chr2_2:70573707-70573726 | Msa0269190:CDS | 35.0% | |
| TAGGCTCAATAAAGATACAG+CGG | - | chr2_2:70573991-70574010 | None:intergenic | 35.0% | |
| AGTATGTGTCGAATATAAGG+AGG | - | chr2_2:70574029-70574048 | None:intergenic | 35.0% | |
| GCTAGTATGTGTCGAATATA+AGG | - | chr2_2:70574032-70574051 | None:intergenic | 35.0% | |
| AAAACATGCCACACAATCAT+CGG | - | chr2_2:70574075-70574094 | None:intergenic | 35.0% | |
| AATGTTCACATACTGCTAAG+GGG | - | chr2_2:70574200-70574219 | None:intergenic | 35.0% | |
| ! | TGTATCATTGTTGACTGAAC+TGG | + | chr2_2:70574497-70574516 | Msa0269190:intron | 35.0% |
| !! | CTGAACTGGTGTTATTCTTA+TGG | + | chr2_2:70574511-70574530 | Msa0269190:intron | 35.0% |
| ACCTATGTCAGATTTGACAA+GGG | - | chr2_2:70574561-70574580 | None:intergenic | 35.0% | |
| TTCCTTAAGATGACATACCA+TGG | + | chr2_2:70574689-70574708 | Msa0269190:intron | 35.0% | |
| AACCATGGTATGTCATCTTA+AGG | - | chr2_2:70574694-70574713 | None:intergenic | 35.0% | |
| GATGACATACCATGGTTATA+TGG | + | chr2_2:70574697-70574716 | Msa0269190:intron | 35.0% | |
| TATACCTTGAAGTGTATGCT+GGG | + | chr2_2:70574726-70574745 | Msa0269190:intron | 35.0% | |
| ACTATACAGGCAGTTGAATT+TGG | - | chr2_2:70574980-70574999 | None:intergenic | 35.0% | |
| ATTCAACTGCCTGTATAGTT+TGG | + | chr2_2:70574981-70575000 | Msa0269190:CDS | 35.0% | |
| CTACTTGTACCAAACTATAC+AGG | - | chr2_2:70574993-70575012 | None:intergenic | 35.0% | |
| AGTTGAAACTAAAACTGCCA+AGG | + | chr2_2:70575014-70575033 | Msa0269190:CDS | 35.0% | |
| TTTGAGAACACCATAACAGT+AGG | - | chr2_2:70575118-70575137 | None:intergenic | 35.0% | |
| CATGCAAAACAAACTCTACT+TGG | - | chr2_2:70575181-70575200 | None:intergenic | 35.0% | |
| !!! | GCATTTTTGGTCCCAAATTT+TGG | - | chr2_2:70575325-70575344 | None:intergenic | 35.0% |
| !!! | TCACTTTTTCAAGGTGTGTT+AGG | + | chr2_2:70575462-70575481 | Msa0269190:intron | 35.0% |
| !!! | CACTTTTTCAAGGTGTGTTA+GGG | + | chr2_2:70575463-70575482 | Msa0269190:intron | 35.0% |
| ATTATCTTTCAGCTCAATGG+TGG | + | chr2_2:70575504-70575523 | Msa0269190:intron | 35.0% | |
| !!! | TATGTTGAGGTTTTGAAGCT+CGG | + | chr2_2:70575574-70575593 | Msa0269190:intron | 35.0% |
| ! | CTTGTTATAGGAATCAGTAC+AGG | - | chr2_2:70575801-70575820 | None:intergenic | 35.0% |
| !! | TAGTTCTAGCTTCACTGTAA+GGG | + | chr2_2:70575850-70575869 | Msa0269190:intron | 35.0% |
| !! | AGGAGTGTTCATGTAGTATA+TGG | + | chr2_2:70575891-70575910 | Msa0269190:intron | 35.0% |
| TCCTGATAGGAAGAAATTCA+TGG | + | chr2_2:70575965-70575984 | Msa0269190:CDS | 35.0% | |
| TCCATGAATTTCTTCCTATC+AGG | - | chr2_2:70575969-70575988 | None:intergenic | 35.0% | |
| TGATAGGAAGAAATTCATGG+AGG | + | chr2_2:70575968-70575987 | Msa0269190:CDS | 35.0% | |
| AAATTCATGGAGGTGATACA+GGG | + | chr2_2:70575978-70575997 | Msa0269190:CDS | 35.0% | |
| TTGTGATTCTCTTCAAGGAA+AGG | - | chr2_2:70576053-70576072 | None:intergenic | 35.0% | |
| GAAACTTGTGATTCTCTTCA+AGG | - | chr2_2:70576058-70576077 | None:intergenic | 35.0% | |
| TGAAGAGAATCACAAGTTTC+TGG | + | chr2_2:70576058-70576077 | Msa0269190:CDS | 35.0% | |
| TAATCTACAAGGCCTGAAAA+AGG | + | chr2_2:70576129-70576148 | Msa0269190:intron | 35.0% | |
| !! | TTCCCTGCATTTTGAAAACA+AGG | + | chr2_2:70576174-70576193 | Msa0269190:intron | 35.0% |
| !! | TCCCTGCATTTTGAAAACAA+GGG | + | chr2_2:70576175-70576194 | Msa0269190:intron | 35.0% |
| !!! | TCCCTTGTTTTCAAAATGCA+GGG | - | chr2_2:70576179-70576198 | None:intergenic | 35.0% |
| !!! | ATCCCTTGTTTTCAAAATGC+AGG | - | chr2_2:70576180-70576199 | None:intergenic | 35.0% |
| TACATCTGCATGAAATCATC+TGG | + | chr2_2:70576234-70576253 | Msa0269190:intron | 35.0% | |
| ACATCTGCATGAAATCATCT+GGG | + | chr2_2:70576235-70576254 | Msa0269190:intron | 35.0% | |
| ! | GTTCATCTTGGATTTGAGAT+TGG | + | chr2_2:70576264-70576283 | Msa0269190:intron | 35.0% |
| ATTGAAGGCTTCATAAAGGA+TGG | + | chr2_2:70576545-70576564 | Msa0269190:exon | 35.0% | |
| ! | CTTCATAAAGGATGGATTCA+TGG | + | chr2_2:70576553-70576572 | Msa0269190:exon | 35.0% |
| !!! | ATGACTTGTTTTCTGTTTGG+TGG | + | chr2_2:70576714-70576733 | Msa0269190:three_prime_UTR | 35.0% |
| GAGACAAATGCAATTTGGTT+TGG | + | chr2_2:70576747-70576766 | Msa0269190:three_prime_UTR | 35.0% | |
| CAGGCGCAAAACAAGTTTAT+AGG | - | chr2_2:70572683-70572702 | None:intergenic | 40.0% | |
| AATTCTGTCACAGCCTTTCT+TGG | + | chr2_2:70573733-70573752 | Msa0269190:CDS | 40.0% | |
| TGTTTGCACACATCCAAGAA+AGG | - | chr2_2:70573749-70573768 | None:intergenic | 40.0% | |
| ! | ATAGTGGCGATTTAGGTTAC+AGG | - | chr2_2:70573953-70573972 | None:intergenic | 40.0% |
| ! | GTCTTTTAAGCTGCAGATAG+TGG | - | chr2_2:70573969-70573988 | None:intergenic | 40.0% |
| GAGGAGTAAGGTAAAGAAGT+AGG | - | chr2_2:70574010-70574029 | None:intergenic | 40.0% | |
| GTCGAATATAAGGAGGAGTA+AGG | - | chr2_2:70574022-70574041 | None:intergenic | 40.0% | |
| ACATACTGCTAAGGGGTAAA+AGG | - | chr2_2:70574193-70574212 | None:intergenic | 40.0% | |
| ACCCTTGTCAAATCTGACAT+AGG | + | chr2_2:70574557-70574576 | Msa0269190:CDS | 40.0% | |
| CACCTATGTCAGATTTGACA+AGG | - | chr2_2:70574562-70574581 | None:intergenic | 40.0% | |
| CTTGTCAAATCTGACATAGG+TGG | + | chr2_2:70574560-70574579 | Msa0269190:CDS | 40.0% | |
| CTATACCTTGAAGTGTATGC+TGG | + | chr2_2:70574725-70574744 | Msa0269190:intron | 40.0% | |
| TTGACTTTCACTGCAGAGAT+TGG | + | chr2_2:70574930-70574949 | Msa0269190:intron | 40.0% | |
| TACAGGCAGTTGAATTTGGT+TGG | - | chr2_2:70574976-70574995 | None:intergenic | 40.0% | |
| TGCACGTGCTTTCCAAAATT+TGG | + | chr2_2:70575310-70575329 | Msa0269190:intron | 40.0% | |
| GCACGTGCTTTCCAAAATTT+GGG | + | chr2_2:70575311-70575330 | Msa0269190:intron | 40.0% | |
| !!! | TTTTGTTTTCCCATGGTCAG+AGG | + | chr2_2:70575617-70575636 | Msa0269190:intron | 40.0% |
| ! | CTTCAGAGCAATGGATTTCT+TGG | + | chr2_2:70575724-70575743 | Msa0269190:intron | 40.0% |
| CCGCATGCTCAATTAAGTTT+CGG | - | chr2_2:70575760-70575779 | None:intergenic | 40.0% | |
| CCGAAACTTAATTGAGCATG+CGG | + | chr2_2:70575757-70575776 | Msa0269190:CDS | 40.0% | |
| ACTTAATTGAGCATGCGGAT+TGG | + | chr2_2:70575762-70575781 | Msa0269190:CDS | 40.0% | |
| ! | AAGACTCTAAAGAAGTGGCA+TGG | + | chr2_2:70575818-70575837 | Msa0269190:CDS | 40.0% |
| !! | CTAGTTCTAGCTTCACTGTA+AGG | + | chr2_2:70575849-70575868 | Msa0269190:intron | 40.0% |
| GAAATTCATGGAGGTGATAC+AGG | + | chr2_2:70575977-70575996 | Msa0269190:CDS | 40.0% | |
| ! | ACAGTTCAGTCTCCTTTTTC+AGG | - | chr2_2:70576144-70576163 | None:intergenic | 40.0% |
| TGAAAAAGGAGACTGAACTG+TGG | + | chr2_2:70576143-70576162 | Msa0269190:intron | 40.0% | |
| TCTGGGAACAATGTTCATCT+TGG | + | chr2_2:70576252-70576271 | Msa0269190:intron | 40.0% | |
| TGTGTCATGCATTTACTGCA+CGG | + | chr2_2:70576305-70576324 | Msa0269190:intron | 40.0% | |
| AATGCAGAGTTTCAGGGATT+TGG | - | chr2_2:70576334-70576353 | None:intergenic | 40.0% | |
| CACGATAATGCAGAGTTTCA+GGG | - | chr2_2:70576340-70576359 | None:intergenic | 40.0% | |
| ACACGATAATGCAGAGTTTC+AGG | - | chr2_2:70576341-70576360 | None:intergenic | 40.0% | |
| GTGTGTGTGTGTTTGTGTAT+TGG | - | chr2_2:70576418-70576437 | None:intergenic | 40.0% | |
| !!! | AAAGCTTGTTGTTTTGGCAC+AGG | + | chr2_2:70576503-70576522 | Msa0269190:intron | 40.0% |
| !! | CTTGTTTTCTGTTTGGTGGA+TGG | + | chr2_2:70576718-70576737 | Msa0269190:three_prime_UTR | 40.0% |
| TTGCAAAGTGATTCCCACGA+CGG | - | chr2_2:70572583-70572602 | None:intergenic | 45.0% | |
| ! | GTTTTGTGCCCATCACCAAA+TGG | - | chr2_2:70573004-70573023 | None:intergenic | 45.0% |
| TATGTGTAGGGTGATAGGAG+TGG | + | chr2_2:70573273-70573292 | Msa0269190:intron | 45.0% | |
| !! | ATGTTGATTTGGGGCCTGTT+TGG | + | chr2_2:70573300-70573319 | Msa0269190:intron | 45.0% |
| GACTAAGGGTCTGTTTGGAT+TGG | - | chr2_2:70573582-70573601 | None:intergenic | 45.0% | |
| ATCCAAACAGACCCTTAGTC+TGG | + | chr2_2:70573582-70573601 | Msa0269190:intron | 45.0% | |
| AACCAGACTAAGGGTCTGTT+TGG | - | chr2_2:70573587-70573606 | None:intergenic | 45.0% | |
| ! | GACTGTTTTCGCTGCTACAT+TGG | + | chr2_2:70573676-70573695 | Msa0269190:CDS | 45.0% |
| ! | GTTTTCGCTGCTACATTGGA+AGG | + | chr2_2:70573680-70573699 | Msa0269190:CDS | 45.0% |
| AGGTTACTCCGATGATTGTG+TGG | + | chr2_2:70574064-70574083 | Msa0269190:intron | 45.0% | |
| TACACCCAGCATACACTTCA+AGG | - | chr2_2:70574733-70574752 | None:intergenic | 45.0% | |
| GCATCATCCAGTTGTACCAA+TGG | + | chr2_2:70575036-70575055 | Msa0269190:CDS | 45.0% | |
| GAGAAGTCCATTGGTACAAC+TGG | - | chr2_2:70575046-70575065 | None:intergenic | 45.0% | |
| ! | GTTGTACCAATGGACTTCTC+TGG | + | chr2_2:70575046-70575065 | Msa0269190:CDS | 45.0% |
| TGTAAGCCAGAGAAGTCCAT+TGG | - | chr2_2:70575055-70575074 | None:intergenic | 45.0% | |
| ! | ATGGACTTCTCTGGCTTACA+AGG | + | chr2_2:70575055-70575074 | Msa0269190:CDS | 45.0% |
| !! | GCAAGAATGTTTGCTATGCG+TGG | + | chr2_2:70575405-70575424 | Msa0269190:intron | 45.0% |
| ! | CAGAGCAATGGATTTCTTGG+TGG | + | chr2_2:70575727-70575746 | Msa0269190:intron | 45.0% |
| ! | GACAGAAGCCTGTTGATGAA+TGG | + | chr2_2:70576575-70576594 | Msa0269190:three_prime_UTR | 45.0% |
| TGCAAGAGCCATTCATCAAC+AGG | - | chr2_2:70576586-70576605 | None:intergenic | 45.0% | |
| !!! | TATATATATATTTCTAAATA+TGG | - | chr2_2:70576375-70576394 | None:intergenic | 5.0% |
| TTTGCGCCTGCGATTGTTGT+CGG | + | chr2_2:70572693-70572712 | Msa0269190:five_prime_UTR | 50.0% | |
| ! | GCTGCAGATAGTGGCGATTT+AGG | - | chr2_2:70573960-70573979 | None:intergenic | 50.0% |
| GGTACAACTGGATGATGCCT+TGG | - | chr2_2:70575034-70575053 | None:intergenic | 50.0% | |
| ! | CTCTAAAGAAGTGGCATGGC+TGG | + | chr2_2:70575822-70575841 | Msa0269190:CDS | 50.0% |
| CAAGCTTCATCGCTACCTGT+AGG | - | chr2_2:70575944-70575963 | None:intergenic | 50.0% | |
| ! | CGATGAAGCTTGCTCCTGAT+AGG | + | chr2_2:70575952-70575971 | Msa0269190:CDS | 50.0% |
| ATGGAGGTGATACAGGGAGA+TGG | + | chr2_2:70575984-70576003 | Msa0269190:CDS | 50.0% | |
| GGAGACTGAACTGTGGACTT+TGG | + | chr2_2:70576150-70576169 | Msa0269190:intron | 50.0% | |
| !! | GTTTTGGCACAGGCTCGATT+TGG | + | chr2_2:70576513-70576532 | Msa0269190:intron | 50.0% |
| TCATACTCGTAGTGCCGTCG+TGG | + | chr2_2:70572566-70572585 | Msa0269190:five_prime_UTR | 55.0% | |
| CATACTCGTAGTGCCGTCGT+GGG | + | chr2_2:70572567-70572586 | Msa0269190:five_prime_UTR | 55.0% | |
| CTGAGACCGACAACAATCGC+AGG | - | chr2_2:70572702-70572721 | None:intergenic | 55.0% | |
| TTGCTGAGGCCTCTGACCAT+GGG | - | chr2_2:70575629-70575648 | None:intergenic | 55.0% | |
| TTTGCTGAGGCCTCTGACCA+TGG | - | chr2_2:70575630-70575649 | None:intergenic | 55.0% | |
| !! | GGCACAGGCTCGATTTGGAT+TGG | + | chr2_2:70576518-70576537 | Msa0269190:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 70572509 | 70576904 | 70572509 | ID=Msa0269190;Name=Msa0269190 |
| chr2_2 | mRNA | 70572509 | 70576904 | 70572509 | ID=Msa0269190-mRNA-1;Parent=Msa0269190;Name=Msa0269190-mRNA-1;_AED=0.03;_eAED=0.03;_QI=263|1|1|1|0.83|0.71|7|344|202 |
| chr2_2 | exon | 70572509 | 70572759 | 70572509 | ID=Msa0269190-mRNA-1:exon:22702;Parent=Msa0269190-mRNA-1 |
| chr2_2 | exon | 70573656 | 70573785 | 70573656 | ID=Msa0269190-mRNA-1:exon:22703;Parent=Msa0269190-mRNA-1 |
| chr2_2 | exon | 70574537 | 70574592 | 70574537 | ID=Msa0269190-mRNA-1:exon:22704;Parent=Msa0269190-mRNA-1 |
| chr2_2 | exon | 70574946 | 70575076 | 70574946 | ID=Msa0269190-mRNA-1:exon:22705;Parent=Msa0269190-mRNA-1 |
| chr2_2 | exon | 70575730 | 70575865 | 70575730 | ID=Msa0269190-mRNA-1:exon:22706;Parent=Msa0269190-mRNA-1 |
| chr2_2 | exon | 70575948 | 70576079 | 70575948 | ID=Msa0269190-mRNA-1:exon:22707;Parent=Msa0269190-mRNA-1 |
| chr2_2 | exon | 70576525 | 70576904 | 70576525 | ID=Msa0269190-mRNA-1:exon:22708;Parent=Msa0269190-mRNA-1 |
| chr2_2 | five_prime_UTR | 70572509 | 70572759 | 70572509 | ID=Msa0269190-mRNA-1:five_prime_utr;Parent=Msa0269190-mRNA-1 |
| chr2_2 | five_prime_UTR | 70573656 | 70573667 | 70573656 | ID=Msa0269190-mRNA-1:five_prime_utr;Parent=Msa0269190-mRNA-1 |
| chr2_2 | CDS | 70573668 | 70573785 | 70573668 | ID=Msa0269190-mRNA-1:cds;Parent=Msa0269190-mRNA-1 |
| chr2_2 | CDS | 70574537 | 70574592 | 70574537 | ID=Msa0269190-mRNA-1:cds;Parent=Msa0269190-mRNA-1 |
| chr2_2 | CDS | 70574946 | 70575076 | 70574946 | ID=Msa0269190-mRNA-1:cds;Parent=Msa0269190-mRNA-1 |
| chr2_2 | CDS | 70575730 | 70575865 | 70575730 | ID=Msa0269190-mRNA-1:cds;Parent=Msa0269190-mRNA-1 |
| chr2_2 | CDS | 70575948 | 70576079 | 70575948 | ID=Msa0269190-mRNA-1:cds;Parent=Msa0269190-mRNA-1 |
| chr2_2 | CDS | 70576525 | 70576560 | 70576525 | ID=Msa0269190-mRNA-1:cds;Parent=Msa0269190-mRNA-1 |
| chr2_2 | three_prime_UTR | 70576561 | 70576904 | 70576561 | ID=Msa0269190-mRNA-1:three_prime_utr;Parent=Msa0269190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
