Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366170 | XP_003590834.1 | 98.020 | 202 | 4 | 0 | 1 | 202 | 1 | 202 | 3.03e-146 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366170 | sp|O22797|GLTP1_ARATH | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.49e-115 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366170 | B7FNC0 | 98.020 | 202 | 4 | 0 | 1 | 202 | 1 | 202 | 1.45e-146 | 415 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1366170 | Msa1435440 | 0.826697 | 2.352529e-54 | -8.615850e-47 |
| Msa0819540 | Msa1366170 | 0.818830 | 1.597469e-52 | -8.615850e-47 |
| Msa0167400 | Msa1366170 | 0.821532 | 3.839812e-53 | -8.615850e-47 |
| Msa1083880 | Msa1366170 | 0.811227 | 7.778822e-51 | -8.615850e-47 |
| Msa0252410 | Msa1366170 | 0.826030 | 3.392492e-54 | -8.615850e-47 |
| Msa0269190 | Msa1366170 | 0.877365 | 6.660521e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366170 | MtrunA17_Chr1g0187451 | 98.020 | 202 | 4 | 0 | 1 | 202 | 1 | 202 | 2.79e-150 | 415 |
| Msa1366170 | MtrunA17_Chr1g0166501 | 81.683 | 202 | 37 | 0 | 1 | 202 | 1 | 202 | 4.75e-126 | 353 |
| Msa1366170 | MtrunA17_Chr1g0187431 | 82.119 | 151 | 14 | 1 | 46 | 196 | 1 | 138 | 1.18e-86 | 251 |
| Msa1366170 | MtrunA17_Chr1g0159211 | 34.921 | 189 | 118 | 1 | 19 | 202 | 35 | 223 | 1.11e-40 | 137 |
| Msa1366170 | MtrunA17_Chr3g0126121 | 37.968 | 187 | 111 | 3 | 21 | 202 | 36 | 222 | 5.06e-40 | 136 |
| Msa1366170 | MtrunA17_Chr1g0159221 | 34.574 | 188 | 119 | 1 | 19 | 202 | 36 | 223 | 2.48e-39 | 134 |
| Msa1366170 | MtrunA17_Chr1g0187441 | 73.469 | 49 | 13 | 0 | 1 | 49 | 16 | 64 | 1.30e-20 | 81.6 |
| Msa1366170 | MtrunA17_Chr2g0292061 | 23.841 | 151 | 111 | 1 | 18 | 168 | 96 | 242 | 6.11e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366170 | AT2G33470.2 | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.53e-116 | 329 |
| Msa1366170 | AT2G33470.1 | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.53e-116 | 329 |
| Msa1366170 | AT1G21360.1 | 35.979 | 189 | 117 | 1 | 17 | 201 | 34 | 222 | 1.31e-37 | 130 |
| Msa1366170 | AT3G21260.3 | 34.444 | 180 | 114 | 1 | 26 | 201 | 53 | 232 | 9.17e-36 | 125 |
| Msa1366170 | AT1G21360.2 | 35.625 | 160 | 99 | 1 | 46 | 201 | 1 | 160 | 4.88e-30 | 108 |
| Msa1366170 | AT1G21360.3 | 37.879 | 132 | 82 | 0 | 17 | 148 | 34 | 165 | 1.95e-25 | 98.2 |
| Msa1366170 | AT3G21260.2 | 33.333 | 147 | 94 | 1 | 59 | 201 | 2 | 148 | 3.74e-25 | 95.9 |
| Msa1366170 | AT3G21260.1 | 32.857 | 140 | 90 | 1 | 66 | 201 | 4 | 143 | 2.62e-23 | 91.3 |
Find 67 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTATCATGTCCATTATTT+TGG | 0.137452 | tig0018446:+37266 | None:intergenic |
| TGAAGAGAATCACAAGTTTC+TGG | 0.197925 | tig0018446:-37864 | Msa1366170:intron |
| AATTCTGTCACAGCCTTTCT+TGG | 0.198191 | tig0018446:-40189 | Msa1366170:CDS |
| CTTCTTTAGAGTCTTGTTAT+AGG | 0.217183 | tig0018446:+38112 | None:intergenic |
| ACTATACAGGCAGTTGAATT+TGG | 0.221005 | tig0018446:+38945 | None:intergenic |
| CTTCAGAGCAATGGATTTCT+TGG | 0.230093 | tig0018446:-38198 | Msa1366170:intron |
| CAATAGAGAAACAGAGTTTA+AGG | 0.233339 | tig0018446:+37293 | None:intergenic |
| GGTTGGATTAGATAAATATT+TGG | 0.236982 | tig0018446:+38966 | None:intergenic |
| CTTAAACTCTGTTTCTCTAT+TGG | 0.265979 | tig0018446:-37292 | Msa1366170:three_prime_UTR |
| TCTATTGGCATCCAAAATAA+TGG | 0.272986 | tig0018446:-37277 | Msa1366170:three_prime_UTR |
| ATTCTTATGGCAGATAAGTT+TGG | 0.303743 | tig0018446:-39398 | Msa1366170:intron |
| AAACATATACTTCCTGTTAT+AGG | 0.315283 | tig0018446:-40158 | Msa1366170:intron |
| TCCATGAATTTCTTCCTATC+AGG | 0.324564 | tig0018446:+37956 | None:intergenic |
| GAAACTTGTGATTCTCTTCA+AGG | 0.338646 | tig0018446:+37867 | None:intergenic |
| CAGGCGCAAAACAAGTTTAT+AGG | 0.344174 | tig0018446:+41242 | None:intergenic |
| TATTGAACTATATTTGCATT+TGG | 0.369916 | tig0018446:-37141 | Msa1366170:three_prime_UTR |
| GAAATTCATGGAGGTGATAC+AGG | 0.370152 | tig0018446:-37945 | Msa1366170:CDS |
| ATTCAACTGCCTGTATAGTT+TGG | 0.375332 | tig0018446:-38941 | Msa1366170:CDS |
| AAAGCATGTAAAGTCTGAAC+AGG | 0.386552 | tig0018446:-40216 | Msa1366170:CDS |
| GAGAAGTCCATTGGTACAAC+TGG | 0.387611 | tig0018446:+38879 | None:intergenic |
| CTCTAAAGAAGTGGCATGGC+TGG | 0.390523 | tig0018446:-38100 | Msa1366170:CDS |
| ATGTTGAGACAAATGCAATT+TGG | 0.405267 | tig0018446:-37182 | Msa1366170:three_prime_UTR |
| ATTTGGATTGGATGAATTGA+AGG | 0.405788 | tig0018446:-37394 | Msa1366170:CDS |
| CCGCATGCTCAATTAAGTTT+CGG | 0.407021 | tig0018446:+38165 | None:intergenic |
| AACGTATAAAACAATCAAAA+AGG | 0.407093 | tig0018446:-41297 | Msa1366170:five_prime_UTR |
| ATAGAGCAATTACCTATAAC+AGG | 0.408205 | tig0018446:+40146 | None:intergenic |
| ATGAATTGAAGGCTTCATAA+AGG | 0.410184 | tig0018446:-37383 | Msa1366170:exon |
| TGCAAGAGCCATTCATCAAC+AGG | 0.414077 | tig0018446:+37341 | None:intergenic |
| GAGACAAATGCAATTTGGTT+TGG | 0.428004 | tig0018446:-37177 | Msa1366170:three_prime_UTR |
| CTTCATAAAGGATGGATTCA+TGG | 0.431048 | tig0018446:-37371 | Msa1366170:exon |
| TACAGGCAGTTGAATTTGGT+TGG | 0.435495 | tig0018446:+38949 | None:intergenic |
| GTTGTACCAATGGACTTCTC+TGG | 0.441414 | tig0018446:-38876 | Msa1366170:CDS |
| GGCACAGGCTCGATTTGGAT+TGG | 0.445538 | tig0018446:-37406 | Msa1366170:intron |
| TTTGCGCCTGCGATTGTTGT+CGG | 0.452135 | tig0018446:-41229 | Msa1366170:five_prime_UTR |
| TGACATAGGTGGTAATATAT+CGG | 0.452189 | tig0018446:-39351 | Msa1366170:intron |
| CAGAGCAATGGATTTCTTGG+TGG | 0.470381 | tig0018446:-38195 | Msa1366170:CDS |
| CTACTTGTACCAAACTATAC+AGG | 0.482133 | tig0018446:+38932 | None:intergenic |
| TTGTGATTCTCTTCAAGGAA+AGG | 0.512151 | tig0018446:+37872 | None:intergenic |
| CGATGAAGCTTGCTCCTGAT+AGG | 0.512345 | tig0018446:-37970 | Msa1366170:CDS |
| CAGAAAACAAGTCATTTGTA+AGG | 0.518851 | tig0018446:+37218 | None:intergenic |
| ATGGACTTCTCTGGCTTACA+AGG | 0.522903 | tig0018446:-38867 | Msa1366170:intron |
| TCCTGATAGGAAGAAATTCA+TGG | 0.526707 | tig0018446:-37957 | Msa1366170:CDS |
| ATTGAAGGCTTCATAAAGGA+TGG | 0.526907 | tig0018446:-37379 | Msa1366170:exon |
| CTTGTTATAGGAATCAGTAC+AGG | 0.533723 | tig0018446:+38124 | None:intergenic |
| ATGTAAAATCTTCAGAGCAA+TGG | 0.543737 | tig0018446:-38207 | Msa1366170:intron |
| CACCTATGTCAGATTTGACA+AGG | 0.546300 | tig0018446:+39363 | None:intergenic |
| TCATACTCGTAGTGCCGTCG+TGG | 0.549745 | tig0018446:-41356 | Msa1366170:five_prime_UTR |
| CCGAAACTTAATTGAGCATG+CGG | 0.552124 | tig0018446:-38165 | Msa1366170:CDS |
| TGTTTGCACACATCCAAGAA+AGG | 0.556146 | tig0018446:+40176 | None:intergenic |
| ACTTAATTGAGCATGCGGAT+TGG | 0.558353 | tig0018446:-38160 | Msa1366170:CDS |
| ATAACAAGACTCTAAAGAAG+TGG | 0.561369 | tig0018446:-38109 | Msa1366170:CDS |
| GGTACAACTGGATGATGCCT+TGG | 0.564664 | tig0018446:+38891 | None:intergenic |
| GACAGAAGCCTGTTGATGAA+TGG | 0.565245 | tig0018446:-37349 | Msa1366170:three_prime_UTR |
| GCATCATCCAGTTGTACCAA+TGG | 0.585383 | tig0018446:-38886 | Msa1366170:CDS |
| AGTTGAAACTAAAACTGCCA+AGG | 0.615757 | tig0018446:-38908 | Msa1366170:CDS |
| TGTAAGCCAGAGAAGTCCAT+TGG | 0.619617 | tig0018446:+38870 | None:intergenic |
| CATACTCGTAGTGCCGTCGT+GGG | 0.622239 | tig0018446:-41355 | Msa1366170:five_prime_UTR |
| ATGGAGGTGATACAGGGAGA+TGG | 0.623186 | tig0018446:-37938 | Msa1366170:CDS |
| ACCCTTGTCAAATCTGACAT+AGG | 0.626109 | tig0018446:-39365 | Msa1366170:CDS |
| CTGAGACCGACAACAATCGC+AGG | 0.626473 | tig0018446:+41223 | None:intergenic |
| AAATTCATGGAGGTGATACA+GGG | 0.636214 | tig0018446:-37944 | Msa1366170:CDS |
| AAGACTCTAAAGAAGTGGCA+TGG | 0.651111 | tig0018446:-38104 | Msa1366170:CDS |
| CTTGTCAAATCTGACATAGG+TGG | 0.659236 | tig0018446:-39362 | Msa1366170:CDS |
| TTGCAAAGTGATTCCCACGA+CGG | 0.679621 | tig0018446:+41342 | None:intergenic |
| AAGCATGTAAAGTCTGAACA+GGG | 0.684936 | tig0018446:-40215 | Msa1366170:CDS |
| ACCTATGTCAGATTTGACAA+GGG | 0.696405 | tig0018446:+39364 | None:intergenic |
| TGATAGGAAGAAATTCATGG+AGG | 0.764708 | tig0018446:-37954 | Msa1366170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAAATCATTTTAATTTTA+AGG | - | tig0018446:38794-38813 | Msa1366170:intron | 10.0% |
| !! | AAAAAAAACTTAAATTGTAT+TGG | - | tig0018446:39399-39418 | Msa1366170:intron | 10.0% |
| !! | TAAAGATATTAATTTCTTAA+AGG | - | tig0018446:40999-41018 | Msa1366170:intron | 10.0% |
| !! | AATTCTAATTGTTTACTTAA+TGG | - | tig0018446:37340-37359 | Msa1366170:three_prime_UTR | 15.0% |
| !! | AATATATCATATATATGTGT+AGG | - | tig0018446:37794-37813 | Msa1366170:intron | 15.0% |
| !! | ATATATCATATATATGTGTA+GGG | - | tig0018446:37795-37814 | Msa1366170:intron | 15.0% |
| !! | GGAATATTAGATTAAATTTA+TGG | + | tig0018446:38434-38453 | None:intergenic | 15.0% |
| !! | AATCATATGAGATATATATA+CGG | + | tig0018446:39169-39188 | None:intergenic | 15.0% |
| !!! | TTTTCAAATTCATATTTAGT+TGG | - | tig0018446:39294-39313 | Msa1366170:intron | 15.0% |
| !! | TTCGATAAAAAATATAAGTT+TGG | + | tig0018446:39380-39399 | None:intergenic | 15.0% |
| !! | AAATAAAGATTAGGAAAAAA+AGG | - | tig0018446:39751-39770 | Msa1366170:intron | 15.0% |
| !! | AATACTAACAAATTACATAA+AGG | + | tig0018446:40200-40219 | None:intergenic | 15.0% |
| !! | AGAAATTAATATCTTTATCA+TGG | + | tig0018446:40996-41015 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAAAAAGAATAAG+TGG | - | tig0018446:37070-37089 | Msa1366170:three_prime_UTR | 20.0% |
| !! | AACGTATAAAACAATCAAAA+AGG | - | tig0018446:37159-37178 | Msa1366170:three_prime_UTR | 20.0% |
| !! | AAAAAAATTGCAATTGAGAA+AGG | + | tig0018446:37302-37321 | None:intergenic | 20.0% |
| !! | ATTAGAATTGAACAATTGAA+AGG | + | tig0018446:37329-37348 | None:intergenic | 20.0% |
| !!! | TTTGAAAAGTTGTGAAATTT+TGG | - | tig0018446:37378-37397 | Msa1366170:exon | 20.0% |
| !!! | AATTTTGGAAAATTAGTTCA+TGG | - | tig0018446:37393-37412 | Msa1366170:CDS | 20.0% |
| !!! | ATTTTGGAAAATTAGTTCAT+GGG | - | tig0018446:37394-37413 | Msa1366170:CDS | 20.0% |
| !! | AAAATCAAAACTTTACTGAA+AGG | + | tig0018446:37465-37484 | None:intergenic | 20.0% |
| !! | AACTATAGTTAAATCATGTA+AGG | - | tig0018446:37555-37574 | Msa1366170:intron | 20.0% |
| !! | TGCATCAAAATCTAAAAATT+AGG | + | tig0018446:37671-37690 | None:intergenic | 20.0% |
| !! | TATTAGCTAATCAAAAAGAA+AGG | - | tig0018446:37771-37790 | Msa1366170:intron | 20.0% |
| !!! | TTTAACTTCATTAGATCTTT+TGG | + | tig0018446:37943-37962 | None:intergenic | 20.0% |
| !! | TATGCATTTGATTATTCAAA+CGG | + | tig0018446:38392-38411 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTTTAGCATGTA+TGG | - | tig0018446:38622-38641 | Msa1366170:intron | 20.0% |
| !!! | CATGTTTTAATGTACAAATT+TGG | - | tig0018446:38645-38664 | Msa1366170:intron | 20.0% |
| !! | TAAGGAAATATTTCATTAAG+AGG | - | tig0018446:38812-38831 | Msa1366170:intron | 20.0% |
| !! | AATATTTCATTAAGAGGAAA+AGG | - | tig0018446:38818-38837 | Msa1366170:intron | 20.0% |
| !!! | TGTATGTTTTTGATAGAAAT+GGG | + | tig0018446:38868-38887 | None:intergenic | 20.0% |
| !! | TGATACAAGTAATCATATTA+TGG | + | tig0018446:39018-39037 | None:intergenic | 20.0% |
| !! | ATCATATGAGATATATATAC+GGG | + | tig0018446:39168-39187 | None:intergenic | 20.0% |
| !!! | ACTACATTTTATAGAACTTT+TGG | - | tig0018446:39341-39360 | Msa1366170:intron | 20.0% |
| !!! | TTTTTCTTCAATTTATGTTG+AGG | - | tig0018446:40095-40114 | Msa1366170:intron | 20.0% |
| !!! | GGATTTGTTTTCTATTTTTT+AGG | - | tig0018446:40405-40424 | Msa1366170:intron | 20.0% |
| !! | TATTGAACTATATTTGCATT+TGG | - | tig0018446:41315-41334 | Msa1366170:five_prime_UTR | 20.0% |
| ! | GCTATAAGCATTATGTAAAA+TGG | - | tig0018446:37621-37640 | Msa1366170:intron | 25.0% |
| !!! | TTAGATTTTGATGCATTGTT+AGG | - | tig0018446:37676-37695 | Msa1366170:intron | 25.0% |
| ! | AAACACAGATCTTTCATAAA+TGG | + | tig0018446:37724-37743 | None:intergenic | 25.0% |
| ! | TAAAAGTTTAACCAGACTAA+GGG | + | tig0018446:38130-38149 | None:intergenic | 25.0% |
| ! | TGTATGTGTTTATTGAGTTA+TGG | - | tig0018446:38152-38171 | Msa1366170:CDS | 25.0% |
| ! | AAACATATACTTCCTGTTAT+AGG | - | tig0018446:38298-38317 | Msa1366170:intron | 25.0% |
| ! | ACATCAAAATGTCAAATCAA+AGG | + | tig0018446:38338-38357 | None:intergenic | 25.0% |
| !!! | TGATGTGTTTTATTTTGTGA+TGG | - | tig0018446:38352-38371 | Msa1366170:intron | 25.0% |
| !!! | GATGTGTTTTATTTTGTGAT+GGG | - | tig0018446:38353-38372 | Msa1366170:intron | 25.0% |
| ! | ATGCATTTGATTATTCAAAC+GGG | + | tig0018446:38391-38410 | None:intergenic | 25.0% |
| ! | ATACTAGCATGTTTAATGTA+AGG | - | tig0018446:38578-38597 | Msa1366170:intron | 25.0% |
| !! | TTGGTTCTTTAATTATACTG+TGG | - | tig0018446:38664-38683 | Msa1366170:intron | 25.0% |
| ! | AACTTAAATAACCAAGAAAC+AGG | + | tig0018446:38774-38793 | None:intergenic | 25.0% |
| !!! | GTGTATGTTTTTGATAGAAA+TGG | + | tig0018446:38869-38888 | None:intergenic | 25.0% |
| ! | GAAAAACACAAGATAAAAAC+AGG | + | tig0018446:39143-39162 | None:intergenic | 25.0% |
| !! | GGTTGGATTAGATAAATATT+TGG | + | tig0018446:39493-39512 | None:intergenic | 25.0% |
| ! | TAAGTTAAGCAGTAATTGTT+TGG | + | tig0018446:39624-39643 | None:intergenic | 25.0% |
| ! | ACTTATAATTCCTACTGTTA+TGG | - | tig0018446:39639-39658 | Msa1366170:intron | 25.0% |
| ! | GAACAGTCAAAATAAAGATT+AGG | - | tig0018446:39742-39761 | Msa1366170:intron | 25.0% |
| ! | TCTAGCTAAAATAATCCTTT+CGG | + | tig0018446:39799-39818 | None:intergenic | 25.0% |
| ! | TTTATTATCTTTCAGCTCAA+TGG | - | tig0018446:40035-40054 | Msa1366170:intron | 25.0% |
| ! | TTATAATTGAAGCTACTGAA+AGG | + | tig0018446:40066-40085 | None:intergenic | 25.0% |
| !!! | TTACTAATTTTGTTTTCCCA+TGG | - | tig0018446:40144-40163 | Msa1366170:intron | 25.0% |
| !! | GTAACAAATATTTTACCTAC+AGG | - | tig0018446:40460-40479 | Msa1366170:intron | 25.0% |
| !!! | AACTTAAAAGCTTGTTGTTT+TGG | - | tig0018446:41029-41048 | Msa1366170:intron | 25.0% |
| !! | TGTTATCATGTCCATTATTT+TGG | + | tig0018446:41193-41212 | None:intergenic | 25.0% |
| ! | ATTCAACTCATTTTCAGCTT+TGG | - | tig0018446:37423-37442 | Msa1366170:intron | 30.0% |
| ! | TGAGTTCTTTGATTTCCATT+TGG | - | tig0018446:37520-37539 | Msa1366170:intron | 30.0% |
| ! | TTTGATTTCCATTTGGTGAT+GGG | - | tig0018446:37527-37546 | Msa1366170:intron | 30.0% |
| ATATATATGTGTAGGGTGAT+AGG | - | tig0018446:37802-37821 | Msa1366170:intron | 30.0% | |
| !! | GAGTGGATTTATGTTGATTT+GGG | - | tig0018446:37824-37843 | Msa1366170:intron | 30.0% |
| !! | AGTGGATTTATGTTGATTTG+GGG | - | tig0018446:37825-37844 | Msa1366170:intron | 30.0% |
| AATAAGCTGTTTATCCAAAC+AGG | + | tig0018446:37851-37870 | None:intergenic | 30.0% | |
| GTAAAAGTTTAACCAGACTA+AGG | + | tig0018446:38131-38150 | None:intergenic | 30.0% | |
| AGCAAAACACAAAAATGGAA+GGG | - | tig0018446:38188-38207 | Msa1366170:CDS | 30.0% | |
| ATAGAGCAATTACCTATAAC+AGG | + | tig0018446:38313-38332 | None:intergenic | 30.0% | |
| ! | TTTGTGATGGGAATATAGAA+TGG | - | tig0018446:38365-38384 | Msa1366170:intron | 30.0% |
| TGCATAGACTTGAATTGATT+TGG | + | tig0018446:38455-38474 | None:intergenic | 30.0% | |
| ATGCAATATCTGTGCATTTA+TGG | - | tig0018446:38695-38714 | Msa1366170:intron | 30.0% | |
| AAATGTTCACATACTGCTAA+GGG | + | tig0018446:38735-38754 | None:intergenic | 30.0% | |
| AAAATGTTCACATACTGCTA+AGG | + | tig0018446:38736-38755 | None:intergenic | 30.0% | |
| !!! | ACTGTTTTTAACCTGTTTCT+TGG | - | tig0018446:38760-38779 | Msa1366170:intron | 30.0% |
| GAAAAGGAATAGAAAACAAG+AGG | - | tig0018446:38834-38853 | Msa1366170:intron | 30.0% | |
| TTGTGTTACAATTTGATGCT+TGG | - | tig0018446:38975-38994 | Msa1366170:CDS | 30.0% | |
| ATTCTTATGGCAGATAAGTT+TGG | - | tig0018446:39058-39077 | Msa1366170:intron | 30.0% | |
| TGACATAGGTGGTAATATAT+CGG | - | tig0018446:39105-39124 | Msa1366170:intron | 30.0% | |
| ATAGTATAGCCATATAACCA+TGG | + | tig0018446:39243-39262 | None:intergenic | 30.0% | |
| TAGTACAGAGTAAGAATAAG+TGG | + | tig0018446:39442-39461 | None:intergenic | 30.0% | |
| TCGGAATCTTATGCATATAT+TGG | + | tig0018446:39780-39799 | None:intergenic | 30.0% | |
| TATATGCATAAGATTCCGAA+AGG | - | tig0018446:39781-39800 | Msa1366170:intron | 30.0% | |
| ! | CCAGTATCATATTGCATTTT+TGG | + | tig0018446:39872-39891 | None:intergenic | 30.0% |
| CCAAAAATGCAATATGATAC+TGG | - | tig0018446:39869-39888 | Msa1366170:intron | 30.0% | |
| !!! | CTAATTGAGTCACTTTTTCA+AGG | - | tig0018446:39987-40006 | Msa1366170:intron | 30.0% |
| ! | AAACAAATAAGCATTTGCTG+AGG | + | tig0018446:40177-40196 | None:intergenic | 30.0% |
| ATGTAAAATCTTCAGAGCAA+TGG | - | tig0018446:40249-40268 | Msa1366170:CDS | 30.0% | |
| !! | CTTCTTTAGAGTCTTGTTAT+AGG | + | tig0018446:40347-40366 | None:intergenic | 30.0% |
| ! | ATAACAAGACTCTAAAGAAG+TGG | - | tig0018446:40347-40366 | Msa1366170:intron | 30.0% |
| TCATGTAGTATATGGTAACA+TGG | - | tig0018446:40433-40452 | Msa1366170:intron | 30.0% | |
| ATTGCTGACATTAATCTACA+AGG | - | tig0018446:40652-40671 | Msa1366170:intron | 30.0% | |
| CATGACACATTAATTGATCT+TGG | + | tig0018446:40828-40847 | None:intergenic | 30.0% | |
| ! | ATTTGGATTGGATGAATTGA+AGG | - | tig0018446:41062-41081 | Msa1366170:intron | 30.0% |
| ATGAATTGAAGGCTTCATAA+AGG | - | tig0018446:41073-41092 | Msa1366170:intron | 30.0% | |
| CAATAGAGAAACAGAGTTTA+AGG | + | tig0018446:41166-41185 | None:intergenic | 30.0% | |
| ! | CTTAAACTCTGTTTCTCTAT+TGG | - | tig0018446:41164-41183 | Msa1366170:intron | 30.0% |
| TCTATTGGCATCCAAAATAA+TGG | - | tig0018446:41179-41198 | Msa1366170:intron | 30.0% | |
| CAGAAAACAAGTCATTTGTA+AGG | + | tig0018446:41241-41260 | None:intergenic | 30.0% | |
| !!! | CAAATGACTTGTTTTCTGTT+TGG | - | tig0018446:41243-41262 | Msa1366170:five_prime_UTR | 30.0% |
| ATGTTGAGACAAATGCAATT+TGG | - | tig0018446:41274-41293 | Msa1366170:five_prime_UTR | 30.0% | |
| ! | CTTTGATTTCCATTTGGTGA+TGG | - | tig0018446:37526-37545 | Msa1366170:intron | 35.0% |
| ACAGATCTTTCATAAATGGC+AGG | + | tig0018446:37720-37739 | None:intergenic | 35.0% | |
| ! | GGAGTGGATTTATGTTGATT+TGG | - | tig0018446:37823-37842 | Msa1366170:intron | 35.0% |
| GCACAAGTGTTTATCATGAT+AGG | - | tig0018446:37882-37901 | Msa1366170:CDS | 35.0% | |
| TGTGCAGCAAAACACAAAAA+TGG | - | tig0018446:38183-38202 | Msa1366170:CDS | 35.0% | |
| CAGCAAAACACAAAAATGGA+AGG | - | tig0018446:38187-38206 | Msa1366170:CDS | 35.0% | |
| AAAGCATGTAAAGTCTGAAC+AGG | - | tig0018446:38240-38259 | Msa1366170:intron | 35.0% | |
| AAGCATGTAAAGTCTGAACA+GGG | - | tig0018446:38241-38260 | Msa1366170:intron | 35.0% | |
| TAGGCTCAATAAAGATACAG+CGG | + | tig0018446:38525-38544 | None:intergenic | 35.0% | |
| AGTATGTGTCGAATATAAGG+AGG | + | tig0018446:38563-38582 | None:intergenic | 35.0% | |
| GCTAGTATGTGTCGAATATA+AGG | + | tig0018446:38566-38585 | None:intergenic | 35.0% | |
| AAAACATGCCACACAATCAT+CGG | + | tig0018446:38609-38628 | None:intergenic | 35.0% | |
| AATGTTCACATACTGCTAAG+GGG | + | tig0018446:38734-38753 | None:intergenic | 35.0% | |
| ! | TGTATCATTGTTGACTGAAC+TGG | - | tig0018446:39031-39050 | Msa1366170:intron | 35.0% |
| !! | CTGAACTGGTGTTATTCTTA+TGG | - | tig0018446:39045-39064 | Msa1366170:intron | 35.0% |
| ACCTATGTCAGATTTGACAA+GGG | + | tig0018446:39095-39114 | None:intergenic | 35.0% | |
| TTCCTTAAGATGACATACCA+TGG | - | tig0018446:39223-39242 | Msa1366170:intron | 35.0% | |
| AACCATGGTATGTCATCTTA+AGG | + | tig0018446:39228-39247 | None:intergenic | 35.0% | |
| GATGACATACCATGGTTATA+TGG | - | tig0018446:39231-39250 | Msa1366170:intron | 35.0% | |
| TATACCTTGAAGTGTATGCT+GGG | - | tig0018446:39260-39279 | Msa1366170:intron | 35.0% | |
| ACTATACAGGCAGTTGAATT+TGG | + | tig0018446:39514-39533 | None:intergenic | 35.0% | |
| ATTCAACTGCCTGTATAGTT+TGG | - | tig0018446:39515-39534 | Msa1366170:intron | 35.0% | |
| CTACTTGTACCAAACTATAC+AGG | + | tig0018446:39527-39546 | None:intergenic | 35.0% | |
| AGTTGAAACTAAAACTGCCA+AGG | - | tig0018446:39548-39567 | Msa1366170:intron | 35.0% | |
| TTTGAGAACACCATAACAGT+AGG | + | tig0018446:39652-39671 | None:intergenic | 35.0% | |
| CATGCAAAACAAACTCTACT+TGG | + | tig0018446:39715-39734 | None:intergenic | 35.0% | |
| !!! | GCATTTTTGGTCCCAAATTT+TGG | + | tig0018446:39859-39878 | None:intergenic | 35.0% |
| !!! | TCACTTTTTCAAGGTGTGTT+AGG | - | tig0018446:39996-40015 | Msa1366170:intron | 35.0% |
| !!! | CACTTTTTCAAGGTGTGTTA+GGG | - | tig0018446:39997-40016 | Msa1366170:intron | 35.0% |
| ATTATCTTTCAGCTCAATGG+TGG | - | tig0018446:40038-40057 | Msa1366170:intron | 35.0% | |
| !!! | TATGTTGAGGTTTTGAAGCT+CGG | - | tig0018446:40108-40127 | Msa1366170:intron | 35.0% |
| ! | CTTGTTATAGGAATCAGTAC+AGG | + | tig0018446:40335-40354 | None:intergenic | 35.0% |
| !! | TAGTTCTAGCTTCACTGTAA+GGG | - | tig0018446:40384-40403 | Msa1366170:intron | 35.0% |
| !! | AGGAGTGTTCATGTAGTATA+TGG | - | tig0018446:40425-40444 | Msa1366170:intron | 35.0% |
| TCCTGATAGGAAGAAATTCA+TGG | - | tig0018446:40499-40518 | Msa1366170:intron | 35.0% | |
| TCCATGAATTTCTTCCTATC+AGG | + | tig0018446:40503-40522 | None:intergenic | 35.0% | |
| TGATAGGAAGAAATTCATGG+AGG | - | tig0018446:40502-40521 | Msa1366170:intron | 35.0% | |
| AAATTCATGGAGGTGATACA+GGG | - | tig0018446:40512-40531 | Msa1366170:intron | 35.0% | |
| TTGTGATTCTCTTCAAGGAA+AGG | + | tig0018446:40587-40606 | None:intergenic | 35.0% | |
| GAAACTTGTGATTCTCTTCA+AGG | + | tig0018446:40592-40611 | None:intergenic | 35.0% | |
| TGAAGAGAATCACAAGTTTC+TGG | - | tig0018446:40592-40611 | Msa1366170:intron | 35.0% | |
| TAATCTACAAGGCCTGAAAA+AGG | - | tig0018446:40663-40682 | Msa1366170:intron | 35.0% | |
| !! | TTCCCTGCATTTTGAAAACA+AGG | - | tig0018446:40708-40727 | Msa1366170:intron | 35.0% |
| !! | TCCCTGCATTTTGAAAACAA+GGG | - | tig0018446:40709-40728 | Msa1366170:intron | 35.0% |
| !!! | TCCCTTGTTTTCAAAATGCA+GGG | + | tig0018446:40713-40732 | None:intergenic | 35.0% |
| !!! | ATCCCTTGTTTTCAAAATGC+AGG | + | tig0018446:40714-40733 | None:intergenic | 35.0% |
| TACATCTGCATGAAATCATC+TGG | - | tig0018446:40768-40787 | Msa1366170:intron | 35.0% | |
| ACATCTGCATGAAATCATCT+GGG | - | tig0018446:40769-40788 | Msa1366170:intron | 35.0% | |
| ! | GTTCATCTTGGATTTGAGAT+TGG | - | tig0018446:40798-40817 | Msa1366170:intron | 35.0% |
| ATTGAAGGCTTCATAAAGGA+TGG | - | tig0018446:41077-41096 | Msa1366170:intron | 35.0% | |
| ! | CTTCATAAAGGATGGATTCA+TGG | - | tig0018446:41085-41104 | Msa1366170:intron | 35.0% |
| !!! | ATGACTTGTTTTCTGTTTGG+TGG | - | tig0018446:41246-41265 | Msa1366170:five_prime_UTR | 35.0% |
| GAGACAAATGCAATTTGGTT+TGG | - | tig0018446:41279-41298 | Msa1366170:five_prime_UTR | 35.0% | |
| CAGGCGCAAAACAAGTTTAT+AGG | + | tig0018446:37217-37236 | None:intergenic | 40.0% | |
| AATTCTGTCACAGCCTTTCT+TGG | - | tig0018446:38267-38286 | Msa1366170:intron | 40.0% | |
| TGTTTGCACACATCCAAGAA+AGG | + | tig0018446:38283-38302 | None:intergenic | 40.0% | |
| ! | ATAGTGGCGATTTAGGTTAC+AGG | + | tig0018446:38487-38506 | None:intergenic | 40.0% |
| ! | GTCTTTTAAGCTGCAGATAG+TGG | + | tig0018446:38503-38522 | None:intergenic | 40.0% |
| GAGGAGTAAGGTAAAGAAGT+AGG | + | tig0018446:38544-38563 | None:intergenic | 40.0% | |
| GTCGAATATAAGGAGGAGTA+AGG | + | tig0018446:38556-38575 | None:intergenic | 40.0% | |
| ACATACTGCTAAGGGGTAAA+AGG | + | tig0018446:38727-38746 | None:intergenic | 40.0% | |
| ACCCTTGTCAAATCTGACAT+AGG | - | tig0018446:39091-39110 | Msa1366170:intron | 40.0% | |
| CACCTATGTCAGATTTGACA+AGG | + | tig0018446:39096-39115 | None:intergenic | 40.0% | |
| CTTGTCAAATCTGACATAGG+TGG | - | tig0018446:39094-39113 | Msa1366170:intron | 40.0% | |
| CTATACCTTGAAGTGTATGC+TGG | - | tig0018446:39259-39278 | Msa1366170:intron | 40.0% | |
| TTGACTTTCACTGCAGAGAT+TGG | - | tig0018446:39464-39483 | Msa1366170:intron | 40.0% | |
| TACAGGCAGTTGAATTTGGT+TGG | + | tig0018446:39510-39529 | None:intergenic | 40.0% | |
| TGCACGTGCTTTCCAAAATT+TGG | - | tig0018446:39844-39863 | Msa1366170:intron | 40.0% | |
| GCACGTGCTTTCCAAAATTT+GGG | - | tig0018446:39845-39864 | Msa1366170:intron | 40.0% | |
| !!! | TTTTGTTTTCCCATGGTCAG+AGG | - | tig0018446:40151-40170 | Msa1366170:intron | 40.0% |
| ! | CTTCAGAGCAATGGATTTCT+TGG | - | tig0018446:40258-40277 | Msa1366170:exon | 40.0% |
| CCGCATGCTCAATTAAGTTT+CGG | + | tig0018446:40294-40313 | None:intergenic | 40.0% | |
| CCGAAACTTAATTGAGCATG+CGG | - | tig0018446:40291-40310 | Msa1366170:intron | 40.0% | |
| ACTTAATTGAGCATGCGGAT+TGG | - | tig0018446:40296-40315 | Msa1366170:intron | 40.0% | |
| ! | AAGACTCTAAAGAAGTGGCA+TGG | - | tig0018446:40352-40371 | Msa1366170:intron | 40.0% |
| !! | CTAGTTCTAGCTTCACTGTA+AGG | - | tig0018446:40383-40402 | Msa1366170:intron | 40.0% |
| GAAATTCATGGAGGTGATAC+AGG | - | tig0018446:40511-40530 | Msa1366170:intron | 40.0% | |
| ! | ACAGTTCAGTCTCCTTTTTC+AGG | + | tig0018446:40678-40697 | None:intergenic | 40.0% |
| TGAAAAAGGAGACTGAACTG+TGG | - | tig0018446:40677-40696 | Msa1366170:intron | 40.0% | |
| TCTGGGAACAATGTTCATCT+TGG | - | tig0018446:40786-40805 | Msa1366170:intron | 40.0% | |
| TGTGTCATGCATTTACTGCA+CGG | - | tig0018446:40839-40858 | Msa1366170:intron | 40.0% | |
| AATGCAGAGTTTCAGGGATT+TGG | + | tig0018446:40868-40887 | None:intergenic | 40.0% | |
| CACGATAATGCAGAGTTTCA+GGG | + | tig0018446:40874-40893 | None:intergenic | 40.0% | |
| ACACGATAATGCAGAGTTTC+AGG | + | tig0018446:40875-40894 | None:intergenic | 40.0% | |
| GTGTGTGTGTGTTTGTGTAT+TGG | + | tig0018446:40950-40969 | None:intergenic | 40.0% | |
| !!! | AAAGCTTGTTGTTTTGGCAC+AGG | - | tig0018446:41035-41054 | Msa1366170:intron | 40.0% |
| !! | CTTGTTTTCTGTTTGGTGGA+TGG | - | tig0018446:41250-41269 | Msa1366170:five_prime_UTR | 40.0% |
| TTGCAAAGTGATTCCCACGA+CGG | + | tig0018446:37117-37136 | None:intergenic | 45.0% | |
| ! | GTTTTGTGCCCATCACCAAA+TGG | + | tig0018446:37538-37557 | None:intergenic | 45.0% |
| TATGTGTAGGGTGATAGGAG+TGG | - | tig0018446:37807-37826 | Msa1366170:intron | 45.0% | |
| !! | ATGTTGATTTGGGGCCTGTT+TGG | - | tig0018446:37834-37853 | Msa1366170:intron | 45.0% |
| GACTAAGGGTCTGTTTGGAT+TGG | + | tig0018446:38116-38135 | None:intergenic | 45.0% | |
| ATCCAAACAGACCCTTAGTC+TGG | - | tig0018446:38116-38135 | Msa1366170:CDS | 45.0% | |
| AACCAGACTAAGGGTCTGTT+TGG | + | tig0018446:38121-38140 | None:intergenic | 45.0% | |
| ! | GACTGTTTTCGCTGCTACAT+TGG | - | tig0018446:38210-38229 | Msa1366170:intron | 45.0% |
| ! | GTTTTCGCTGCTACATTGGA+AGG | - | tig0018446:38214-38233 | Msa1366170:intron | 45.0% |
| AGGTTACTCCGATGATTGTG+TGG | - | tig0018446:38598-38617 | Msa1366170:intron | 45.0% | |
| TACACCCAGCATACACTTCA+AGG | + | tig0018446:39267-39286 | None:intergenic | 45.0% | |
| GCATCATCCAGTTGTACCAA+TGG | - | tig0018446:39570-39589 | Msa1366170:intron | 45.0% | |
| GAGAAGTCCATTGGTACAAC+TGG | + | tig0018446:39580-39599 | None:intergenic | 45.0% | |
| ! | GTTGTACCAATGGACTTCTC+TGG | - | tig0018446:39580-39599 | Msa1366170:intron | 45.0% |
| TGTAAGCCAGAGAAGTCCAT+TGG | + | tig0018446:39589-39608 | None:intergenic | 45.0% | |
| ! | ATGGACTTCTCTGGCTTACA+AGG | - | tig0018446:39589-39608 | Msa1366170:intron | 45.0% |
| !! | GCAAGAATGTTTGCTATGCG+TGG | - | tig0018446:39939-39958 | Msa1366170:intron | 45.0% |
| ! | CAGAGCAATGGATTTCTTGG+TGG | - | tig0018446:40261-40280 | Msa1366170:exon | 45.0% |
| ! | GACAGAAGCCTGTTGATGAA+TGG | - | tig0018446:41107-41126 | Msa1366170:intron | 45.0% |
| TGCAAGAGCCATTCATCAAC+AGG | + | tig0018446:41118-41137 | None:intergenic | 45.0% | |
| !!! | AATATATATATTTCTAAATA+TGG | + | tig0018446:40909-40928 | None:intergenic | 5.0% |
| TTTGCGCCTGCGATTGTTGT+CGG | - | tig0018446:37227-37246 | Msa1366170:three_prime_UTR | 50.0% | |
| ! | GCTGCAGATAGTGGCGATTT+AGG | + | tig0018446:38494-38513 | None:intergenic | 50.0% |
| GGTACAACTGGATGATGCCT+TGG | + | tig0018446:39568-39587 | None:intergenic | 50.0% | |
| ! | CTCTAAAGAAGTGGCATGGC+TGG | - | tig0018446:40356-40375 | Msa1366170:intron | 50.0% |
| CAAGCTTCATCGCTACCTGT+AGG | + | tig0018446:40478-40497 | None:intergenic | 50.0% | |
| ! | CGATGAAGCTTGCTCCTGAT+AGG | - | tig0018446:40486-40505 | Msa1366170:intron | 50.0% |
| ATGGAGGTGATACAGGGAGA+TGG | - | tig0018446:40518-40537 | Msa1366170:intron | 50.0% | |
| GGAGACTGAACTGTGGACTT+TGG | - | tig0018446:40684-40703 | Msa1366170:intron | 50.0% | |
| !! | GTTTTGGCACAGGCTCGATT+TGG | - | tig0018446:41045-41064 | Msa1366170:intron | 50.0% |
| TCATACTCGTAGTGCCGTCG+TGG | - | tig0018446:37100-37119 | Msa1366170:three_prime_UTR | 55.0% | |
| CATACTCGTAGTGCCGTCGT+GGG | - | tig0018446:37101-37120 | Msa1366170:three_prime_UTR | 55.0% | |
| CTGAGACCGACAACAATCGC+AGG | + | tig0018446:37236-37255 | None:intergenic | 55.0% | |
| TTGCTGAGGCCTCTGACCAT+GGG | + | tig0018446:40163-40182 | None:intergenic | 55.0% | |
| TTTGCTGAGGCCTCTGACCA+TGG | + | tig0018446:40164-40183 | None:intergenic | 55.0% | |
| !! | GGCACAGGCTCGATTTGGAT+TGG | - | tig0018446:41050-41069 | Msa1366170:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018446 | gene | 37042 | 41436 | 37042 | ID=Msa1366170;Name=Msa1366170 |
| tig0018446 | mRNA | 37042 | 41436 | 37042 | ID=Msa1366170-mRNA-1;Parent=Msa1366170;Name=Msa1366170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=264|1|1|1|0.83|0.71|7|344|202 |
| tig0018446 | exon | 37042 | 37421 | 37042 | ID=Msa1366170-mRNA-1:exon:14993;Parent=Msa1366170-mRNA-1 |
| tig0018446 | exon | 37865 | 37996 | 37865 | ID=Msa1366170-mRNA-1:exon:14992;Parent=Msa1366170-mRNA-1 |
| tig0018446 | exon | 38079 | 38214 | 38079 | ID=Msa1366170-mRNA-1:exon:14991;Parent=Msa1366170-mRNA-1 |
| tig0018446 | exon | 38868 | 38998 | 38868 | ID=Msa1366170-mRNA-1:exon:14990;Parent=Msa1366170-mRNA-1 |
| tig0018446 | exon | 39352 | 39407 | 39352 | ID=Msa1366170-mRNA-1:exon:14989;Parent=Msa1366170-mRNA-1 |
| tig0018446 | exon | 40159 | 40288 | 40159 | ID=Msa1366170-mRNA-1:exon:14988;Parent=Msa1366170-mRNA-1 |
| tig0018446 | exon | 41185 | 41436 | 41185 | ID=Msa1366170-mRNA-1:exon:14987;Parent=Msa1366170-mRNA-1 |
| tig0018446 | five_prime_UTR | 41185 | 41436 | 41185 | ID=Msa1366170-mRNA-1:five_prime_utr;Parent=Msa1366170-mRNA-1 |
| tig0018446 | five_prime_UTR | 40277 | 40288 | 40277 | ID=Msa1366170-mRNA-1:five_prime_utr;Parent=Msa1366170-mRNA-1 |
| tig0018446 | CDS | 40159 | 40276 | 40159 | ID=Msa1366170-mRNA-1:cds;Parent=Msa1366170-mRNA-1 |
| tig0018446 | CDS | 39352 | 39407 | 39352 | ID=Msa1366170-mRNA-1:cds;Parent=Msa1366170-mRNA-1 |
| tig0018446 | CDS | 38868 | 38998 | 38868 | ID=Msa1366170-mRNA-1:cds;Parent=Msa1366170-mRNA-1 |
| tig0018446 | CDS | 38079 | 38214 | 38079 | ID=Msa1366170-mRNA-1:cds;Parent=Msa1366170-mRNA-1 |
| tig0018446 | CDS | 37865 | 37996 | 37865 | ID=Msa1366170-mRNA-1:cds;Parent=Msa1366170-mRNA-1 |
| tig0018446 | CDS | 37386 | 37421 | 37386 | ID=Msa1366170-mRNA-1:cds;Parent=Msa1366170-mRNA-1 |
| tig0018446 | three_prime_UTR | 37042 | 37385 | 37042 | ID=Msa1366170-mRNA-1:three_prime_utr;Parent=Msa1366170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
