Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0269480 | XP_013460823.1 | 81.979 | 283 | 23 | 5 | 1 | 260 | 1 | 278 | 1.98e-126 | 379 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0269480 | sp|O81472|MP3K2_ARATH | 44.554 | 101 | 36 | 4 | 25 | 111 | 123 | 217 | 8.64e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0092470 | Msa0269480 | 0.841128 | 5.732117e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0269480 | MtrunA17_Chr3g0115171 | 81.979 | 283 | 23 | 5 | 1 | 260 | 1 | 278 | 1.67e-129 | 378 |
Msa0269480 | MtrunA17_Chr5g0424651 | 44.172 | 326 | 106 | 12 | 1 | 260 | 1 | 316 | 2.18e-48 | 169 |
Msa0269480 | MtrunA17_Chr5g0424501 | 39.394 | 132 | 24 | 3 | 64 | 185 | 8 | 93 | 1.50e-14 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0269480 | AT4G08480.1 | 44.554 | 101 | 36 | 4 | 25 | 111 | 123 | 217 | 8.78e-12 | 65.5 |
Find 78 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTAAGAGTTTAGGACTTTC+TGG | 0.144459 | 2_3:-390026 | Msa0269480:intron |
GTGAATGATGTGAGAGAATT+AGG | 0.270862 | 2_3:-389891 | Msa0269480:intron |
AGTAGTAGTAGTGGTATTAA+TGG | 0.282493 | 2_3:-389774 | Msa0269480:CDS |
TTCACTTTACACTCGTTCTA+TGG | 0.295418 | 2_3:-390108 | Msa0269480:CDS |
TGCTATCCCTGCTGCTGCTT+GGG | 0.310218 | 2_3:-389991 | Msa0269480:CDS |
TCTTCTTTCGATGACTCTTC+TGG | 0.312116 | 2_3:-390131 | Msa0269480:CDS |
TGAGATTGTTGCTGGTCTTA+TGG | 0.314797 | 2_3:-389547 | Msa0269480:CDS |
TTTGGCTCCGGTTGGGGAAG+GGG | 0.325778 | 2_3:-389661 | Msa0269480:CDS |
GCATTGCGACGCTCGAGTTT+AGG | 0.330227 | 2_3:+390191 | None:intergenic |
ATAGGGATATGGTTAGGGTT+AGG | 0.340790 | 2_3:-389845 | Msa0269480:CDS |
TAGGGATATGGTTAGGGTTA+GGG | 0.351064 | 2_3:-389844 | Msa0269480:CDS |
GTGAAGATAGGGATATGGTT+AGG | 0.370355 | 2_3:-389851 | Msa0269480:intron |
AAACGCTTAATTCTCCCGTT+TGG | 0.374300 | 2_3:+389447 | None:intergenic |
TGAAGGATTTGGCTCCGGTT+GGG | 0.376560 | 2_3:-389668 | Msa0269480:CDS |
CTTCACTCTCCTCCACTTCC+CGG | 0.381690 | 2_3:+389622 | None:intergenic |
TTGCTATCCCTGCTGCTGCT+TGG | 0.381923 | 2_3:-389992 | Msa0269480:CDS |
TCTTCTTCCCCTTCCCCAAC+CGG | 0.385753 | 2_3:+389654 | None:intergenic |
GCTGGAGAAGAAGAACCTTT+AGG | 0.391492 | 2_3:-388814 | None:intergenic |
AGTGGGAAGAACATCAGAAT+TGG | 0.397757 | 2_3:+389950 | None:intergenic |
GCTTGATGAGCTTGATTTGA+AGG | 0.400798 | 2_3:-389922 | Msa0269480:CDS |
TTCCGTATTGAAGGAGTTGA+TGG | 0.419296 | 2_3:-390065 | Msa0269480:intron |
TGATGTTGGTTAGGTTGTTA+TGG | 0.422294 | 2_3:+390243 | None:intergenic |
GAAATGTGAAGATAGGGATA+TGG | 0.422904 | 2_3:-389856 | Msa0269480:intron |
GAGAGTGAAGGTGAGGAAGT+TGG | 0.423875 | 2_3:-389609 | Msa0269480:intron |
GGAGATACATTATTCGATCT+AGG | 0.427749 | 2_3:+389468 | None:intergenic |
AGATGATCCAGCGTCGTAAT+CGG | 0.436574 | 2_3:+390157 | None:intergenic |
GCCACCTGGGATGAGAGTTC+CGG | 0.439326 | 2_3:-389727 | Msa0269480:CDS |
AATCCATGATGATGTTGGTT+AGG | 0.439676 | 2_3:+390234 | None:intergenic |
TGGTAGAGAAGAGGAGGTGG+TGG | 0.445258 | 2_3:-389589 | Msa0269480:CDS |
TACGCCTGGAAGCTGGCAAA+AGG | 0.447885 | 2_3:-389422 | Msa0269480:CDS |
CGTACTAGCTTCCGTATTGA+AGG | 0.449990 | 2_3:-390074 | Msa0269480:CDS |
GAAGGATTTGGCTCCGGTTG+GGG | 0.453965 | 2_3:-389667 | Msa0269480:CDS |
AGGATTGATGAGATTGTTGC+TGG | 0.457925 | 2_3:-389555 | Msa0269480:CDS |
CTTCAATACGGAAGCTAGTA+CGG | 0.460414 | 2_3:+390075 | None:intergenic |
CGTTTATTACGCCTGGAAGC+TGG | 0.467322 | 2_3:-389429 | Msa0269480:CDS |
TTGAAGGATTTGGCTCCGGT+TGG | 0.468399 | 2_3:-389669 | Msa0269480:CDS |
CGAATAATGTATCTCCAAAC+GGG | 0.468780 | 2_3:-389461 | Msa0269480:CDS |
AGAGGAGGTGGTGGATAATG+AGG | 0.471570 | 2_3:-389580 | Msa0269480:CDS |
GCTTGATTTGAAGGAGAAGA+AGG | 0.473078 | 2_3:-389913 | Msa0269480:CDS |
CCGATGATTAAGCCGCCACC+TGG | 0.473602 | 2_3:-389741 | Msa0269480:CDS |
GGTTGGGGAAGGGGAAGAAG+AGG | 0.475658 | 2_3:-389652 | Msa0269480:CDS |
GATTTGGCTCCGGTTGGGGA+AGG | 0.475659 | 2_3:-389663 | Msa0269480:CDS |
ATAGCTTCCCAAGCAGCAGC+AGG | 0.476599 | 2_3:+389984 | None:intergenic |
AATTAAGCGTTTATTACGCC+TGG | 0.480836 | 2_3:-389436 | Msa0269480:CDS |
ATTTGGCTCCGGTTGGGGAA+GGG | 0.486760 | 2_3:-389662 | Msa0269480:CDS |
TGAAGATAGGGATATGGTTA+GGG | 0.487113 | 2_3:-389850 | Msa0269480:intron |
TGGTAGAAAATATGATGCAT+TGG | 0.488553 | 2_3:+390263 | None:intergenic |
TCGAATAATGTATCTCCAAA+CGG | 0.490117 | 2_3:-389462 | Msa0269480:CDS |
TAGGGTTAGGGTTAAAGATG+AGG | 0.512027 | 2_3:-389832 | Msa0269480:CDS |
TTGATAACACGTGTTCCACT+TGG | 0.512717 | 2_3:-389698 | Msa0269480:CDS |
AGTTGGTAGAGAAGAGGAGG+TGG | 0.513985 | 2_3:-389592 | Msa0269480:CDS |
CTTTGAATCCATGATGATGT+TGG | 0.515510 | 2_3:+390229 | None:intergenic |
TGATTCTTCTAGTACTGCTA+TGG | 0.523445 | 2_3:-389493 | Msa0269480:CDS |
TGAGGAAGTTGGTAGAGAAG+AGG | 0.526588 | 2_3:-389598 | Msa0269480:CDS |
AGCAGGGATAGCAAAATCCT+CGG | 0.529169 | 2_3:+390001 | None:intergenic |
CACCATCAACTCCTTCAATA+CGG | 0.536830 | 2_3:+390063 | None:intergenic |
GGAAGTTGGTAGAGAAGAGG+AGG | 0.537250 | 2_3:-389595 | Msa0269480:CDS |
CCAGGTGGCGGCTTAATCAT+CGG | 0.545523 | 2_3:+389741 | None:intergenic |
CAACCTAACCAACATCATCA+TGG | 0.546744 | 2_3:-390237 | Msa0269480:CDS |
AAGTACACCGATTACGACGC+TGG | 0.549499 | 2_3:-390164 | Msa0269480:CDS |
GCAGGGATAGCAAAATCCTC+GGG | 0.567278 | 2_3:+390002 | None:intergenic |
GGAACTCTCATCCCAGGTGG+CGG | 0.582853 | 2_3:+389729 | None:intergenic |
CACGTGTTATCAACAACCAC+CGG | 0.587179 | 2_3:+389708 | None:intergenic |
TGATAACACGTGTTCCACTT+GGG | 0.588653 | 2_3:-389697 | Msa0269480:CDS |
ACGCCTGGAAGCTGGCAAAA+GGG | 0.589657 | 2_3:-389421 | Msa0269480:CDS |
ATCCTTCAAAAGATCCCAAG+TGG | 0.594119 | 2_3:+389683 | None:intergenic |
GTTGGGGAAGGGGAAGAAGA+GGG | 0.594380 | 2_3:-389651 | Msa0269480:CDS |
AGCTCATCAAGCTTCAAAGT+GGG | 0.598094 | 2_3:+389933 | None:intergenic |
CGATGATTAAGCCGCCACCT+GGG | 0.604089 | 2_3:-389740 | Msa0269480:CDS |
ACCTGGGATGAGAGTTCCGG+TGG | 0.605875 | 2_3:-389724 | Msa0269480:CDS |
ACCACCGGAACTCTCATCCC+AGG | 0.610818 | 2_3:+389723 | None:intergenic |
AAGCTCATCAAGCTTCAAAG+TGG | 0.612583 | 2_3:+389932 | None:intergenic |
TTTAGGACTTTCTGGACCCG+AGG | 0.636314 | 2_3:-390018 | Msa0269480:intron |
AGGTGGTGGATAATGAGGCG+AGG | 0.647698 | 2_3:-389575 | Msa0269480:CDS |
CCTGGAAGCTGGCAAAAGGG+TGG | 0.655756 | 2_3:-389418 | Msa0269480:intron |
TAGCTTCCCAAGCAGCAGCA+GGG | 0.656089 | 2_3:+389985 | None:intergenic |
GGTGGCGGCTTAATCATCGG+TGG | 0.659281 | 2_3:+389744 | None:intergenic |
ACCGGAACTCTCATCCCAGG+TGG | 0.716056 | 2_3:+389726 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTACATATTATTATATTTC+AGG | + | chr2_3:390038-390057 | None:intergenic | 10.0% |
!! | ATTACATATTATTATATTTC+AGG | + | chr2_3:390038-390057 | None:intergenic | 10.0% |
!! | AGCTAAAATGACATATTTAA+GGG | + | chr2_3:390244-390263 | None:intergenic | 20.0% |
!! | AGCTAAAATGACATATTTAA+GGG | + | chr2_3:390244-390263 | None:intergenic | 20.0% |
! | ATATTTGATAGATTGAGTCT+TGG | + | chr2_3:390010-390029 | None:intergenic | 25.0% |
! | TGAAGTAAAATAGCTCAAAA+AGG | - | chr2_3:390058-390077 | Msa0269480:intron | 25.0% |
! | AAAAAGTGATCTTTGATCTA+TGG | + | chr2_3:390199-390218 | None:intergenic | 25.0% |
! | CAGCTAAAATGACATATTTA+AGG | + | chr2_3:390245-390264 | None:intergenic | 25.0% |
!!! | CTTAAATATGTCATTTTAGC+TGG | - | chr2_3:390243-390262 | Msa0269480:CDS | 25.0% |
! | ATATTTGATAGATTGAGTCT+TGG | + | chr2_3:390010-390029 | None:intergenic | 25.0% |
! | TGAAGTAAAATAGCTCAAAA+AGG | - | chr2_3:390058-390077 | Msa0269480:intron | 25.0% |
! | AAAAAGTGATCTTTGATCTA+TGG | + | chr2_3:390199-390218 | None:intergenic | 25.0% |
! | CAGCTAAAATGACATATTTA+AGG | + | chr2_3:390245-390264 | None:intergenic | 25.0% |
!!! | CTTAAATATGTCATTTTAGC+TGG | - | chr2_3:390243-390262 | Msa0269480:CDS | 25.0% |
GATCGAATTTGTAAGAGTTT+AGG | - | chr2_3:389040-389059 | Msa0269480:intron | 30.0% | |
TGAATGAGAAATGTGAAGAT+AGG | - | chr2_3:389212-389231 | Msa0269480:intron | 30.0% | |
GAATGAGAAATGTGAAGATA+GGG | - | chr2_3:389213-389232 | Msa0269480:intron | 30.0% | |
AGTAGTAGTAGTGGTATTAA+TGG | - | chr2_3:389301-389320 | Msa0269480:intron | 30.0% | |
TCGAATAATGTATCTCCAAA+CGG | - | chr2_3:389613-389632 | Msa0269480:intron | 30.0% | |
TCTATGGTTTACTTGTGAAA+GGG | + | chr2_3:390183-390202 | None:intergenic | 30.0% | |
ATCTATGGTTTACTTGTGAA+AGG | + | chr2_3:390184-390203 | None:intergenic | 30.0% | |
GATCGAATTTGTAAGAGTTT+AGG | - | chr2_3:389040-389059 | Msa0269480:intron | 30.0% | |
TGAATGAGAAATGTGAAGAT+AGG | - | chr2_3:389212-389231 | Msa0269480:intron | 30.0% | |
GAATGAGAAATGTGAAGATA+GGG | - | chr2_3:389213-389232 | Msa0269480:intron | 30.0% | |
AGTAGTAGTAGTGGTATTAA+TGG | - | chr2_3:389301-389320 | Msa0269480:intron | 30.0% | |
TCGAATAATGTATCTCCAAA+CGG | - | chr2_3:389613-389632 | Msa0269480:intron | 30.0% | |
TCTATGGTTTACTTGTGAAA+GGG | + | chr2_3:390183-390202 | None:intergenic | 30.0% | |
ATCTATGGTTTACTTGTGAA+AGG | + | chr2_3:390184-390203 | None:intergenic | 30.0% | |
! | TGATGTTGGTTAGGTTGTTA+TGG | + | chr2_3:388835-388854 | None:intergenic | 35.0% |
! | AATCCATGATGATGTTGGTT+AGG | + | chr2_3:388844-388863 | None:intergenic | 35.0% |
! | CTTTGAATCCATGATGATGT+TGG | + | chr2_3:388849-388868 | None:intergenic | 35.0% |
TTCACTTTACACTCGTTCTA+TGG | - | chr2_3:388967-388986 | Msa0269480:intron | 35.0% | |
! | TGTAAGAGTTTAGGACTTTC+TGG | - | chr2_3:389049-389068 | Msa0269480:intron | 35.0% |
GTGAATGATGTGAGAGAATT+AGG | - | chr2_3:389184-389203 | Msa0269480:intron | 35.0% | |
GAAATGTGAAGATAGGGATA+TGG | - | chr2_3:389219-389238 | Msa0269480:intron | 35.0% | |
TGAAGATAGGGATATGGTTA+GGG | - | chr2_3:389225-389244 | Msa0269480:intron | 35.0% | |
GTTAGTAGTAGTAGTAGTAG+TGG | - | chr2_3:389292-389311 | Msa0269480:intron | 35.0% | |
!! | TTGGGATCTTTTGAAGGATT+TGG | - | chr2_3:389396-389415 | Msa0269480:intron | 35.0% |
TGATTCTTCTAGTACTGCTA+TGG | - | chr2_3:389582-389601 | Msa0269480:CDS | 35.0% | |
GGAGATACATTATTCGATCT+AGG | + | chr2_3:389610-389629 | None:intergenic | 35.0% | |
CGAATAATGTATCTCCAAAC+GGG | - | chr2_3:389614-389633 | Msa0269480:intron | 35.0% | |
AATTAAGCGTTTATTACGCC+TGG | - | chr2_3:389639-389658 | Msa0269480:CDS | 35.0% | |
AAGAGGATTAGGAGCTAATT+CGG | + | chr2_3:389978-389997 | None:intergenic | 35.0% | |
! | GGGCAAGAATCATGAATTTT+TGG | + | chr2_3:390224-390243 | None:intergenic | 35.0% |
! | TGATGTTGGTTAGGTTGTTA+TGG | + | chr2_3:388835-388854 | None:intergenic | 35.0% |
! | AATCCATGATGATGTTGGTT+AGG | + | chr2_3:388844-388863 | None:intergenic | 35.0% |
! | CTTTGAATCCATGATGATGT+TGG | + | chr2_3:388849-388868 | None:intergenic | 35.0% |
TTCACTTTACACTCGTTCTA+TGG | - | chr2_3:388967-388986 | Msa0269480:intron | 35.0% | |
! | TGTAAGAGTTTAGGACTTTC+TGG | - | chr2_3:389049-389068 | Msa0269480:intron | 35.0% |
GTGAATGATGTGAGAGAATT+AGG | - | chr2_3:389184-389203 | Msa0269480:intron | 35.0% | |
GAAATGTGAAGATAGGGATA+TGG | - | chr2_3:389219-389238 | Msa0269480:intron | 35.0% | |
TGAAGATAGGGATATGGTTA+GGG | - | chr2_3:389225-389244 | Msa0269480:intron | 35.0% | |
GTTAGTAGTAGTAGTAGTAG+TGG | - | chr2_3:389292-389311 | Msa0269480:intron | 35.0% | |
!! | TTGGGATCTTTTGAAGGATT+TGG | - | chr2_3:389396-389415 | Msa0269480:intron | 35.0% |
TGATTCTTCTAGTACTGCTA+TGG | - | chr2_3:389582-389601 | Msa0269480:CDS | 35.0% | |
GGAGATACATTATTCGATCT+AGG | + | chr2_3:389610-389629 | None:intergenic | 35.0% | |
CGAATAATGTATCTCCAAAC+GGG | - | chr2_3:389614-389633 | Msa0269480:intron | 35.0% | |
AATTAAGCGTTTATTACGCC+TGG | - | chr2_3:389639-389658 | Msa0269480:CDS | 35.0% | |
AAGAGGATTAGGAGCTAATT+CGG | + | chr2_3:389978-389997 | None:intergenic | 35.0% | |
! | GGGCAAGAATCATGAATTTT+TGG | + | chr2_3:390224-390243 | None:intergenic | 35.0% |
CAACCTAACCAACATCATCA+TGG | - | chr2_3:388838-388857 | Msa0269480:intron | 40.0% | |
TCTTCTTTCGATGACTCTTC+TGG | - | chr2_3:388944-388963 | Msa0269480:intron | 40.0% | |
CTTCAATACGGAAGCTAGTA+CGG | + | chr2_3:389003-389022 | None:intergenic | 40.0% | |
TTCCGTATTGAAGGAGTTGA+TGG | - | chr2_3:389010-389029 | Msa0269480:intron | 40.0% | |
CACCATCAACTCCTTCAATA+CGG | + | chr2_3:389015-389034 | None:intergenic | 40.0% | |
AGTGGGAAGAACATCAGAAT+TGG | + | chr2_3:389128-389147 | None:intergenic | 40.0% | |
AGCTCATCAAGCTTCAAAGT+GGG | + | chr2_3:389145-389164 | None:intergenic | 40.0% | |
AAGCTCATCAAGCTTCAAAG+TGG | + | chr2_3:389146-389165 | None:intergenic | 40.0% | |
! | GCTTGATGAGCTTGATTTGA+AGG | - | chr2_3:389153-389172 | Msa0269480:intron | 40.0% |
! | GCTTGATTTGAAGGAGAAGA+AGG | - | chr2_3:389162-389181 | Msa0269480:intron | 40.0% |
GTGAAGATAGGGATATGGTT+AGG | - | chr2_3:389224-389243 | Msa0269480:intron | 40.0% | |
ATAGGGATATGGTTAGGGTT+AGG | - | chr2_3:389230-389249 | Msa0269480:intron | 40.0% | |
TAGGGATATGGTTAGGGTTA+GGG | - | chr2_3:389231-389250 | Msa0269480:intron | 40.0% | |
TAGGGTTAGGGTTAAAGATG+AGG | - | chr2_3:389243-389262 | Msa0269480:intron | 40.0% | |
! | TTGATAACACGTGTTCCACT+TGG | - | chr2_3:389377-389396 | Msa0269480:intron | 40.0% |
TGATAACACGTGTTCCACTT+GGG | - | chr2_3:389378-389397 | Msa0269480:intron | 40.0% | |
! | TTCCACTTGGGATCTTTTGA+AGG | - | chr2_3:389390-389409 | Msa0269480:intron | 40.0% |
ATCCTTCAAAAGATCCCAAG+TGG | + | chr2_3:389395-389414 | None:intergenic | 40.0% | |
!! | TCTTTTGAAGGATTTGGCTC+CGG | - | chr2_3:389402-389421 | Msa0269480:intron | 40.0% |
AGGATTGATGAGATTGTTGC+TGG | - | chr2_3:389520-389539 | Msa0269480:CDS | 40.0% | |
!! | TGAGATTGTTGCTGGTCTTA+TGG | - | chr2_3:389528-389547 | Msa0269480:CDS | 40.0% |
AAACGCTTAATTCTCCCGTT+TGG | + | chr2_3:389631-389650 | None:intergenic | 40.0% | |
!!! | TGGCAAAAGGGTGGTTTTTT+GGG | - | chr2_3:389666-389685 | Msa0269480:CDS | 40.0% |
TCGTTTGGATCTGTCTATGA+AGG | - | chr2_3:389696-389715 | Msa0269480:CDS | 40.0% | |
TGAAGCAAAAGCAGCAAAAG+TGG | - | chr2_3:389851-389870 | Msa0269480:intron | 40.0% | |
AAAAGCAGCAAAAGTGGCTT+TGG | - | chr2_3:389857-389876 | Msa0269480:intron | 40.0% | |
AGAGGATTAGGAGCTAATTC+GGG | + | chr2_3:389977-389996 | None:intergenic | 40.0% | |
GGAGCAAAAGAAAGAGGATT+AGG | + | chr2_3:389989-390008 | None:intergenic | 40.0% | |
AGTCTTGGAGCAAAAGAAAG+AGG | + | chr2_3:389995-390014 | None:intergenic | 40.0% | |
CAACCTAACCAACATCATCA+TGG | - | chr2_3:388838-388857 | Msa0269480:intron | 40.0% | |
TCTTCTTTCGATGACTCTTC+TGG | - | chr2_3:388944-388963 | Msa0269480:intron | 40.0% | |
CTTCAATACGGAAGCTAGTA+CGG | + | chr2_3:389003-389022 | None:intergenic | 40.0% | |
TTCCGTATTGAAGGAGTTGA+TGG | - | chr2_3:389010-389029 | Msa0269480:intron | 40.0% | |
CACCATCAACTCCTTCAATA+CGG | + | chr2_3:389015-389034 | None:intergenic | 40.0% | |
AGTGGGAAGAACATCAGAAT+TGG | + | chr2_3:389128-389147 | None:intergenic | 40.0% | |
AGCTCATCAAGCTTCAAAGT+GGG | + | chr2_3:389145-389164 | None:intergenic | 40.0% | |
AAGCTCATCAAGCTTCAAAG+TGG | + | chr2_3:389146-389165 | None:intergenic | 40.0% | |
! | GCTTGATGAGCTTGATTTGA+AGG | - | chr2_3:389153-389172 | Msa0269480:intron | 40.0% |
! | GCTTGATTTGAAGGAGAAGA+AGG | - | chr2_3:389162-389181 | Msa0269480:intron | 40.0% |
GTGAAGATAGGGATATGGTT+AGG | - | chr2_3:389224-389243 | Msa0269480:intron | 40.0% | |
ATAGGGATATGGTTAGGGTT+AGG | - | chr2_3:389230-389249 | Msa0269480:intron | 40.0% | |
TAGGGATATGGTTAGGGTTA+GGG | - | chr2_3:389231-389250 | Msa0269480:intron | 40.0% | |
TAGGGTTAGGGTTAAAGATG+AGG | - | chr2_3:389243-389262 | Msa0269480:intron | 40.0% | |
! | TTGATAACACGTGTTCCACT+TGG | - | chr2_3:389377-389396 | Msa0269480:intron | 40.0% |
TGATAACACGTGTTCCACTT+GGG | - | chr2_3:389378-389397 | Msa0269480:intron | 40.0% | |
! | TTCCACTTGGGATCTTTTGA+AGG | - | chr2_3:389390-389409 | Msa0269480:intron | 40.0% |
ATCCTTCAAAAGATCCCAAG+TGG | + | chr2_3:389395-389414 | None:intergenic | 40.0% | |
!! | TCTTTTGAAGGATTTGGCTC+CGG | - | chr2_3:389402-389421 | Msa0269480:intron | 40.0% |
AGGATTGATGAGATTGTTGC+TGG | - | chr2_3:389520-389539 | Msa0269480:CDS | 40.0% | |
!! | TGAGATTGTTGCTGGTCTTA+TGG | - | chr2_3:389528-389547 | Msa0269480:CDS | 40.0% |
AAACGCTTAATTCTCCCGTT+TGG | + | chr2_3:389631-389650 | None:intergenic | 40.0% | |
!!! | TGGCAAAAGGGTGGTTTTTT+GGG | - | chr2_3:389666-389685 | Msa0269480:CDS | 40.0% |
TCGTTTGGATCTGTCTATGA+AGG | - | chr2_3:389696-389715 | Msa0269480:CDS | 40.0% | |
TGAAGCAAAAGCAGCAAAAG+TGG | - | chr2_3:389851-389870 | Msa0269480:intron | 40.0% | |
AAAAGCAGCAAAAGTGGCTT+TGG | - | chr2_3:389857-389876 | Msa0269480:intron | 40.0% | |
AGAGGATTAGGAGCTAATTC+GGG | + | chr2_3:389977-389996 | None:intergenic | 40.0% | |
GGAGCAAAAGAAAGAGGATT+AGG | + | chr2_3:389989-390008 | None:intergenic | 40.0% | |
AGTCTTGGAGCAAAAGAAAG+AGG | + | chr2_3:389995-390014 | None:intergenic | 40.0% | |
AGATGATCCAGCGTCGTAAT+CGG | + | chr2_3:388921-388940 | None:intergenic | 45.0% | |
! | CGTACTAGCTTCCGTATTGA+AGG | - | chr2_3:389001-389020 | Msa0269480:intron | 45.0% |
AGCAGGGATAGCAAAATCCT+CGG | + | chr2_3:389077-389096 | None:intergenic | 45.0% | |
CACGTGTTATCAACAACCAC+CGG | + | chr2_3:389370-389389 | None:intergenic | 45.0% | |
!! | TGAGGAAGTTGGTAGAGAAG+AGG | - | chr2_3:389477-389496 | Msa0269480:CDS | 45.0% |
!!! | CTGGCAAAAGGGTGGTTTTT+TGG | - | chr2_3:389665-389684 | Msa0269480:CDS | 45.0% |
!!! | GGCAAAAGGGTGGTTTTTTG+GGG | - | chr2_3:389667-389686 | Msa0269480:CDS | 45.0% |
!!! | GCAAAAGGGTGGTTTTTTGG+GGG | - | chr2_3:389668-389687 | Msa0269480:CDS | 45.0% |
!!! | CAAAAGGGTGGTTTTTTGGG+GGG | - | chr2_3:389669-389688 | Msa0269480:CDS | 45.0% |
CAAAGTCAGAAACTTGGCAC+GGG | + | chr2_3:389916-389935 | None:intergenic | 45.0% | |
CCAAAGTCAGAAACTTGGCA+CGG | + | chr2_3:389917-389936 | None:intergenic | 45.0% | |
CGTGCCAAGTTTCTGACTTT+GGG | - | chr2_3:389915-389934 | Msa0269480:CDS | 45.0% | |
GTGCCAAGTTTCTGACTTTG+GGG | - | chr2_3:389916-389935 | Msa0269480:CDS | 45.0% | |
TGCCAAGTTTCTGACTTTGG+GGG | - | chr2_3:389917-389936 | Msa0269480:CDS | 45.0% | |
ATCCCCCAAAGTCAGAAACT+TGG | + | chr2_3:389922-389941 | None:intergenic | 45.0% | |
AGATGATCCAGCGTCGTAAT+CGG | + | chr2_3:388921-388940 | None:intergenic | 45.0% | |
! | CGTACTAGCTTCCGTATTGA+AGG | - | chr2_3:389001-389020 | Msa0269480:intron | 45.0% |
AGCAGGGATAGCAAAATCCT+CGG | + | chr2_3:389077-389096 | None:intergenic | 45.0% | |
CACGTGTTATCAACAACCAC+CGG | + | chr2_3:389370-389389 | None:intergenic | 45.0% | |
!! | TGAGGAAGTTGGTAGAGAAG+AGG | - | chr2_3:389477-389496 | Msa0269480:CDS | 45.0% |
!!! | CTGGCAAAAGGGTGGTTTTT+TGG | - | chr2_3:389665-389684 | Msa0269480:CDS | 45.0% |
!!! | GGCAAAAGGGTGGTTTTTTG+GGG | - | chr2_3:389667-389686 | Msa0269480:CDS | 45.0% |
!!! | GCAAAAGGGTGGTTTTTTGG+GGG | - | chr2_3:389668-389687 | Msa0269480:CDS | 45.0% |
!!! | CAAAAGGGTGGTTTTTTGGG+GGG | - | chr2_3:389669-389688 | Msa0269480:CDS | 45.0% |
CAAAGTCAGAAACTTGGCAC+GGG | + | chr2_3:389916-389935 | None:intergenic | 45.0% | |
CCAAAGTCAGAAACTTGGCA+CGG | + | chr2_3:389917-389936 | None:intergenic | 45.0% | |
CGTGCCAAGTTTCTGACTTT+GGG | - | chr2_3:389915-389934 | Msa0269480:CDS | 45.0% | |
GTGCCAAGTTTCTGACTTTG+GGG | - | chr2_3:389916-389935 | Msa0269480:CDS | 45.0% | |
TGCCAAGTTTCTGACTTTGG+GGG | - | chr2_3:389917-389936 | Msa0269480:CDS | 45.0% | |
ATCCCCCAAAGTCAGAAACT+TGG | + | chr2_3:389922-389941 | None:intergenic | 45.0% | |
! | AAGTACACCGATTACGACGC+TGG | - | chr2_3:388911-388930 | Msa0269480:intron | 50.0% |
! | TTTAGGACTTTCTGGACCCG+AGG | - | chr2_3:389057-389076 | Msa0269480:intron | 50.0% |
GCAGGGATAGCAAAATCCTC+GGG | + | chr2_3:389076-389095 | None:intergenic | 50.0% | |
! | TTGAAGGATTTGGCTCCGGT+TGG | - | chr2_3:389406-389425 | Msa0269480:intron | 50.0% |
! | TGAAGGATTTGGCTCCGGTT+GGG | - | chr2_3:389407-389426 | Msa0269480:intron | 50.0% |
!! | GGGAAGAAGAGGGTTTTGAC+CGG | - | chr2_3:389434-389453 | Msa0269480:CDS | 50.0% |
!! | GGAAGAAGAGGGTTTTGACC+GGG | - | chr2_3:389435-389454 | Msa0269480:CDS | 50.0% |
GAGAGTGAAGGTGAGGAAGT+TGG | - | chr2_3:389466-389485 | Msa0269480:CDS | 50.0% | |
!! | GGAAGTTGGTAGAGAAGAGG+AGG | - | chr2_3:389480-389499 | Msa0269480:CDS | 50.0% |
!! | AGTTGGTAGAGAAGAGGAGG+TGG | - | chr2_3:389483-389502 | Msa0269480:CDS | 50.0% |
!! | AGAGGAGGTGGTGGATAATG+AGG | - | chr2_3:389495-389514 | Msa0269480:CDS | 50.0% |
CGTTTATTACGCCTGGAAGC+TGG | - | chr2_3:389646-389665 | Msa0269480:CDS | 50.0% | |
!! | TTTTTGGGGGGTGGTTCGTT+TGG | - | chr2_3:389681-389700 | Msa0269480:CDS | 50.0% |
!! | AGCAGCAAAAGTGGCTTTGG+AGG | - | chr2_3:389860-389879 | Msa0269480:intron | 50.0% |
!! | GCAGCAAAAGTGGCTTTGGA+GGG | - | chr2_3:389861-389880 | Msa0269480:intron | 50.0% |
CCGTGCCAAGTTTCTGACTT+TGG | - | chr2_3:389914-389933 | Msa0269480:CDS | 50.0% | |
! | AAGTACACCGATTACGACGC+TGG | - | chr2_3:388911-388930 | Msa0269480:intron | 50.0% |
! | TTTAGGACTTTCTGGACCCG+AGG | - | chr2_3:389057-389076 | Msa0269480:intron | 50.0% |
GCAGGGATAGCAAAATCCTC+GGG | + | chr2_3:389076-389095 | None:intergenic | 50.0% | |
! | TTGAAGGATTTGGCTCCGGT+TGG | - | chr2_3:389406-389425 | Msa0269480:intron | 50.0% |
! | TGAAGGATTTGGCTCCGGTT+GGG | - | chr2_3:389407-389426 | Msa0269480:intron | 50.0% |
!! | GGGAAGAAGAGGGTTTTGAC+CGG | - | chr2_3:389434-389453 | Msa0269480:CDS | 50.0% |
!! | GGAAGAAGAGGGTTTTGACC+GGG | - | chr2_3:389435-389454 | Msa0269480:CDS | 50.0% |
GAGAGTGAAGGTGAGGAAGT+TGG | - | chr2_3:389466-389485 | Msa0269480:CDS | 50.0% | |
!! | GGAAGTTGGTAGAGAAGAGG+AGG | - | chr2_3:389480-389499 | Msa0269480:CDS | 50.0% |
!! | AGTTGGTAGAGAAGAGGAGG+TGG | - | chr2_3:389483-389502 | Msa0269480:CDS | 50.0% |
!! | AGAGGAGGTGGTGGATAATG+AGG | - | chr2_3:389495-389514 | Msa0269480:CDS | 50.0% |
CGTTTATTACGCCTGGAAGC+TGG | - | chr2_3:389646-389665 | Msa0269480:CDS | 50.0% | |
!! | TTTTTGGGGGGTGGTTCGTT+TGG | - | chr2_3:389681-389700 | Msa0269480:CDS | 50.0% |
!! | AGCAGCAAAAGTGGCTTTGG+AGG | - | chr2_3:389860-389879 | Msa0269480:intron | 50.0% |
!! | GCAGCAAAAGTGGCTTTGGA+GGG | - | chr2_3:389861-389880 | Msa0269480:intron | 50.0% |
CCGTGCCAAGTTTCTGACTT+TGG | - | chr2_3:389914-389933 | Msa0269480:CDS | 50.0% | |
GCATTGCGACGCTCGAGTTT+AGG | + | chr2_3:388887-388906 | None:intergenic | 55.0% | |
TTGCTATCCCTGCTGCTGCT+TGG | - | chr2_3:389083-389102 | Msa0269480:intron | 55.0% | |
! | TGCTATCCCTGCTGCTGCTT+GGG | - | chr2_3:389084-389103 | Msa0269480:intron | 55.0% |
TAGCTTCCCAAGCAGCAGCA+GGG | + | chr2_3:389093-389112 | None:intergenic | 55.0% | |
ATAGCTTCCCAAGCAGCAGC+AGG | + | chr2_3:389094-389113 | None:intergenic | 55.0% | |
! | CCAGGTGGCGGCTTAATCAT+CGG | + | chr2_3:389337-389356 | None:intergenic | 55.0% |
CGATGATTAAGCCGCCACCT+GGG | - | chr2_3:389335-389354 | Msa0269480:intron | 55.0% | |
! | GAAGGATTTGGCTCCGGTTG+GGG | - | chr2_3:389408-389427 | Msa0269480:intron | 55.0% |
! | ATTTGGCTCCGGTTGGGGAA+GGG | - | chr2_3:389413-389432 | Msa0269480:intron | 55.0% |
TCTTCTTCCCCTTCCCCAAC+CGG | + | chr2_3:389424-389443 | None:intergenic | 55.0% | |
GTTGGGGAAGGGGAAGAAGA+GGG | - | chr2_3:389424-389443 | Msa0269480:CDS | 55.0% | |
!! | AGAGGGTTTTGACCGGGAAG+TGG | - | chr2_3:389441-389460 | Msa0269480:CDS | 55.0% |
CTTCACTCTCCTCCACTTCC+CGG | + | chr2_3:389456-389475 | None:intergenic | 55.0% | |
AGTGGAGGAGAGTGAAGGTG+AGG | - | chr2_3:389459-389478 | Msa0269480:CDS | 55.0% | |
TGGTAGAGAAGAGGAGGTGG+TGG | - | chr2_3:389486-389505 | Msa0269480:CDS | 55.0% | |
!! | AGGTGGTGGATAATGAGGCG+AGG | - | chr2_3:389500-389519 | Msa0269480:CDS | 55.0% |
TACGCCTGGAAGCTGGCAAA+AGG | - | chr2_3:389653-389672 | Msa0269480:CDS | 55.0% | |
ACGCCTGGAAGCTGGCAAAA+GGG | - | chr2_3:389654-389673 | Msa0269480:CDS | 55.0% | |
!!! | AAGGGTGGTTTTTTGGGGGG+TGG | - | chr2_3:389672-389691 | Msa0269480:CDS | 55.0% |
!! | GCAAAAGTGGCTTTGGAGGG+TGG | - | chr2_3:389864-389883 | Msa0269480:intron | 55.0% |
GGCAGTGCCAATAGTTGGCA+CGG | + | chr2_3:389895-389914 | None:intergenic | 55.0% | |
GCATTGCGACGCTCGAGTTT+AGG | + | chr2_3:388887-388906 | None:intergenic | 55.0% | |
TTGCTATCCCTGCTGCTGCT+TGG | - | chr2_3:389083-389102 | Msa0269480:intron | 55.0% | |
! | TGCTATCCCTGCTGCTGCTT+GGG | - | chr2_3:389084-389103 | Msa0269480:intron | 55.0% |
TAGCTTCCCAAGCAGCAGCA+GGG | + | chr2_3:389093-389112 | None:intergenic | 55.0% | |
ATAGCTTCCCAAGCAGCAGC+AGG | + | chr2_3:389094-389113 | None:intergenic | 55.0% | |
! | CCAGGTGGCGGCTTAATCAT+CGG | + | chr2_3:389337-389356 | None:intergenic | 55.0% |
CGATGATTAAGCCGCCACCT+GGG | - | chr2_3:389335-389354 | Msa0269480:intron | 55.0% | |
! | GAAGGATTTGGCTCCGGTTG+GGG | - | chr2_3:389408-389427 | Msa0269480:intron | 55.0% |
! | ATTTGGCTCCGGTTGGGGAA+GGG | - | chr2_3:389413-389432 | Msa0269480:intron | 55.0% |
TCTTCTTCCCCTTCCCCAAC+CGG | + | chr2_3:389424-389443 | None:intergenic | 55.0% | |
GTTGGGGAAGGGGAAGAAGA+GGG | - | chr2_3:389424-389443 | Msa0269480:CDS | 55.0% | |
!! | AGAGGGTTTTGACCGGGAAG+TGG | - | chr2_3:389441-389460 | Msa0269480:CDS | 55.0% |
CTTCACTCTCCTCCACTTCC+CGG | + | chr2_3:389456-389475 | None:intergenic | 55.0% | |
AGTGGAGGAGAGTGAAGGTG+AGG | - | chr2_3:389459-389478 | Msa0269480:CDS | 55.0% | |
TGGTAGAGAAGAGGAGGTGG+TGG | - | chr2_3:389486-389505 | Msa0269480:CDS | 55.0% | |
!! | AGGTGGTGGATAATGAGGCG+AGG | - | chr2_3:389500-389519 | Msa0269480:CDS | 55.0% |
TACGCCTGGAAGCTGGCAAA+AGG | - | chr2_3:389653-389672 | Msa0269480:CDS | 55.0% | |
ACGCCTGGAAGCTGGCAAAA+GGG | - | chr2_3:389654-389673 | Msa0269480:CDS | 55.0% | |
!!! | AAGGGTGGTTTTTTGGGGGG+TGG | - | chr2_3:389672-389691 | Msa0269480:CDS | 55.0% |
!! | GCAAAAGTGGCTTTGGAGGG+TGG | - | chr2_3:389864-389883 | Msa0269480:intron | 55.0% |
GGCAGTGCCAATAGTTGGCA+CGG | + | chr2_3:389895-389914 | None:intergenic | 55.0% | |
! | GGTGGCGGCTTAATCATCGG+TGG | + | chr2_3:389334-389353 | None:intergenic | 60.0% |
CCGATGATTAAGCCGCCACC+TGG | - | chr2_3:389334-389353 | Msa0269480:intron | 60.0% | |
GGAACTCTCATCCCAGGTGG+CGG | + | chr2_3:389349-389368 | None:intergenic | 60.0% | |
GCCACCTGGGATGAGAGTTC+CGG | - | chr2_3:389348-389367 | Msa0269480:intron | 60.0% | |
ACCGGAACTCTCATCCCAGG+TGG | + | chr2_3:389352-389371 | None:intergenic | 60.0% | |
ACCTGGGATGAGAGTTCCGG+TGG | - | chr2_3:389351-389370 | Msa0269480:intron | 60.0% | |
ACCACCGGAACTCTCATCCC+AGG | + | chr2_3:389355-389374 | None:intergenic | 60.0% | |
! | GATTTGGCTCCGGTTGGGGA+AGG | - | chr2_3:389412-389431 | Msa0269480:intron | 60.0% |
! | TTTGGCTCCGGTTGGGGAAG+GGG | - | chr2_3:389414-389433 | Msa0269480:intron | 60.0% |
GGTTGGGGAAGGGGAAGAAG+AGG | - | chr2_3:389423-389442 | Msa0269480:CDS | 60.0% | |
!! | GGGTTTTGACCGGGAAGTGG+AGG | - | chr2_3:389444-389463 | Msa0269480:CDS | 60.0% |
CGGGAAGTGGAGGAGAGTGA+AGG | - | chr2_3:389454-389473 | Msa0269480:CDS | 60.0% | |
! | CCACCCTTTTGCCAGCTTCC+AGG | + | chr2_3:389660-389679 | None:intergenic | 60.0% |
CCTGGAAGCTGGCAAAAGGG+TGG | - | chr2_3:389657-389676 | Msa0269480:CDS | 60.0% | |
!! | AGTGGCTTTGGAGGGTGGCA+CGG | - | chr2_3:389869-389888 | Msa0269480:intron | 60.0% |
GCACGGGCAGTGCCAATAGT+TGG | + | chr2_3:389900-389919 | None:intergenic | 60.0% | |
! | GGTGGCGGCTTAATCATCGG+TGG | + | chr2_3:389334-389353 | None:intergenic | 60.0% |
CCGATGATTAAGCCGCCACC+TGG | - | chr2_3:389334-389353 | Msa0269480:intron | 60.0% | |
GGAACTCTCATCCCAGGTGG+CGG | + | chr2_3:389349-389368 | None:intergenic | 60.0% | |
GCCACCTGGGATGAGAGTTC+CGG | - | chr2_3:389348-389367 | Msa0269480:intron | 60.0% | |
ACCGGAACTCTCATCCCAGG+TGG | + | chr2_3:389352-389371 | None:intergenic | 60.0% | |
ACCTGGGATGAGAGTTCCGG+TGG | - | chr2_3:389351-389370 | Msa0269480:intron | 60.0% | |
ACCACCGGAACTCTCATCCC+AGG | + | chr2_3:389355-389374 | None:intergenic | 60.0% | |
! | GATTTGGCTCCGGTTGGGGA+AGG | - | chr2_3:389412-389431 | Msa0269480:intron | 60.0% |
! | TTTGGCTCCGGTTGGGGAAG+GGG | - | chr2_3:389414-389433 | Msa0269480:intron | 60.0% |
GGTTGGGGAAGGGGAAGAAG+AGG | - | chr2_3:389423-389442 | Msa0269480:CDS | 60.0% | |
!! | GGGTTTTGACCGGGAAGTGG+AGG | - | chr2_3:389444-389463 | Msa0269480:CDS | 60.0% |
CGGGAAGTGGAGGAGAGTGA+AGG | - | chr2_3:389454-389473 | Msa0269480:CDS | 60.0% | |
! | CCACCCTTTTGCCAGCTTCC+AGG | + | chr2_3:389660-389679 | None:intergenic | 60.0% |
CCTGGAAGCTGGCAAAAGGG+TGG | - | chr2_3:389657-389676 | Msa0269480:CDS | 60.0% | |
!! | AGTGGCTTTGGAGGGTGGCA+CGG | - | chr2_3:389869-389888 | Msa0269480:intron | 60.0% |
GCACGGGCAGTGCCAATAGT+TGG | + | chr2_3:389900-389919 | None:intergenic | 60.0% | |
GGCACGGCCGTGCCAACTAT+TGG | - | chr2_3:389885-389904 | Msa0269480:intron | 65.0% | |
GGCACGGCCGTGCCAACTAT+TGG | - | chr2_3:389885-389904 | Msa0269480:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 388815 | 390282 | 388815 | ID=Msa0269480;Name=Msa0269480 |
chr2_3 | mRNA | 388815 | 390282 | 388815 | ID=Msa0269480-mRNA-1;Parent=Msa0269480;Name=Msa0269480-mRNA-1;_AED=0.35;_eAED=0.37;_QI=0|0|0|0.8|0.25|0.4|5|0|274 |
chr2_3 | exon | 390066 | 390282 | 390066 | ID=Msa0269480-mRNA-1:exon:227;Parent=Msa0269480-mRNA-1 |
chr2_3 | exon | 389892 | 390035 | 389892 | ID=Msa0269480-mRNA-1:exon:226;Parent=Msa0269480-mRNA-1 |
chr2_3 | exon | 389628 | 389867 | 389628 | ID=Msa0269480-mRNA-1:exon:225;Parent=Msa0269480-mRNA-1 |
chr2_3 | exon | 389419 | 389621 | 389419 | ID=Msa0269480-mRNA-1:exon:224;Parent=Msa0269480-mRNA-1 |
chr2_3 | exon | 388815 | 388835 | 388815 | ID=Msa0269480-mRNA-1:exon:223;Parent=Msa0269480-mRNA-1 |
chr2_3 | CDS | 390066 | 390282 | 390066 | ID=Msa0269480-mRNA-1:cds;Parent=Msa0269480-mRNA-1 |
chr2_3 | CDS | 389892 | 390035 | 389892 | ID=Msa0269480-mRNA-1:cds;Parent=Msa0269480-mRNA-1 |
chr2_3 | CDS | 389628 | 389867 | 389628 | ID=Msa0269480-mRNA-1:cds;Parent=Msa0269480-mRNA-1 |
chr2_3 | CDS | 389419 | 389621 | 389419 | ID=Msa0269480-mRNA-1:cds;Parent=Msa0269480-mRNA-1 |
chr2_3 | CDS | 388815 | 388835 | 388815 | ID=Msa0269480-mRNA-1:cds;Parent=Msa0269480-mRNA-1 |
Gene Sequence |
Protein sequence |