AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0269480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269480 MtrunA17_Chr3g0115171 81.979 283 23 5 1 260 1 278 1.67e-129 378
Msa0269480 MtrunA17_Chr5g0424651 44.172 326 106 12 1 260 1 316 2.18e-48 169
Msa0269480 MtrunA17_Chr5g0424501 39.394 132 24 3 64 185 8 93 1.50e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269480 AT4G08480.1 44.554 101 36 4 25 111 123 217 8.78e-12 65.5

Find 78 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAGAGTTTAGGACTTTC+TGG 0.144459 2_3:-390026 Msa0269480:intron
GTGAATGATGTGAGAGAATT+AGG 0.270862 2_3:-389891 Msa0269480:intron
AGTAGTAGTAGTGGTATTAA+TGG 0.282493 2_3:-389774 Msa0269480:CDS
TTCACTTTACACTCGTTCTA+TGG 0.295418 2_3:-390108 Msa0269480:CDS
TGCTATCCCTGCTGCTGCTT+GGG 0.310218 2_3:-389991 Msa0269480:CDS
TCTTCTTTCGATGACTCTTC+TGG 0.312116 2_3:-390131 Msa0269480:CDS
TGAGATTGTTGCTGGTCTTA+TGG 0.314797 2_3:-389547 Msa0269480:CDS
TTTGGCTCCGGTTGGGGAAG+GGG 0.325778 2_3:-389661 Msa0269480:CDS
GCATTGCGACGCTCGAGTTT+AGG 0.330227 2_3:+390191 None:intergenic
ATAGGGATATGGTTAGGGTT+AGG 0.340790 2_3:-389845 Msa0269480:CDS
TAGGGATATGGTTAGGGTTA+GGG 0.351064 2_3:-389844 Msa0269480:CDS
GTGAAGATAGGGATATGGTT+AGG 0.370355 2_3:-389851 Msa0269480:intron
AAACGCTTAATTCTCCCGTT+TGG 0.374300 2_3:+389447 None:intergenic
TGAAGGATTTGGCTCCGGTT+GGG 0.376560 2_3:-389668 Msa0269480:CDS
CTTCACTCTCCTCCACTTCC+CGG 0.381690 2_3:+389622 None:intergenic
TTGCTATCCCTGCTGCTGCT+TGG 0.381923 2_3:-389992 Msa0269480:CDS
TCTTCTTCCCCTTCCCCAAC+CGG 0.385753 2_3:+389654 None:intergenic
GCTGGAGAAGAAGAACCTTT+AGG 0.391492 2_3:-388814 None:intergenic
AGTGGGAAGAACATCAGAAT+TGG 0.397757 2_3:+389950 None:intergenic
GCTTGATGAGCTTGATTTGA+AGG 0.400798 2_3:-389922 Msa0269480:CDS
TTCCGTATTGAAGGAGTTGA+TGG 0.419296 2_3:-390065 Msa0269480:intron
TGATGTTGGTTAGGTTGTTA+TGG 0.422294 2_3:+390243 None:intergenic
GAAATGTGAAGATAGGGATA+TGG 0.422904 2_3:-389856 Msa0269480:intron
GAGAGTGAAGGTGAGGAAGT+TGG 0.423875 2_3:-389609 Msa0269480:intron
GGAGATACATTATTCGATCT+AGG 0.427749 2_3:+389468 None:intergenic
AGATGATCCAGCGTCGTAAT+CGG 0.436574 2_3:+390157 None:intergenic
GCCACCTGGGATGAGAGTTC+CGG 0.439326 2_3:-389727 Msa0269480:CDS
AATCCATGATGATGTTGGTT+AGG 0.439676 2_3:+390234 None:intergenic
TGGTAGAGAAGAGGAGGTGG+TGG 0.445258 2_3:-389589 Msa0269480:CDS
TACGCCTGGAAGCTGGCAAA+AGG 0.447885 2_3:-389422 Msa0269480:CDS
CGTACTAGCTTCCGTATTGA+AGG 0.449990 2_3:-390074 Msa0269480:CDS
GAAGGATTTGGCTCCGGTTG+GGG 0.453965 2_3:-389667 Msa0269480:CDS
AGGATTGATGAGATTGTTGC+TGG 0.457925 2_3:-389555 Msa0269480:CDS
CTTCAATACGGAAGCTAGTA+CGG 0.460414 2_3:+390075 None:intergenic
CGTTTATTACGCCTGGAAGC+TGG 0.467322 2_3:-389429 Msa0269480:CDS
TTGAAGGATTTGGCTCCGGT+TGG 0.468399 2_3:-389669 Msa0269480:CDS
CGAATAATGTATCTCCAAAC+GGG 0.468780 2_3:-389461 Msa0269480:CDS
AGAGGAGGTGGTGGATAATG+AGG 0.471570 2_3:-389580 Msa0269480:CDS
GCTTGATTTGAAGGAGAAGA+AGG 0.473078 2_3:-389913 Msa0269480:CDS
CCGATGATTAAGCCGCCACC+TGG 0.473602 2_3:-389741 Msa0269480:CDS
GGTTGGGGAAGGGGAAGAAG+AGG 0.475658 2_3:-389652 Msa0269480:CDS
GATTTGGCTCCGGTTGGGGA+AGG 0.475659 2_3:-389663 Msa0269480:CDS
ATAGCTTCCCAAGCAGCAGC+AGG 0.476599 2_3:+389984 None:intergenic
AATTAAGCGTTTATTACGCC+TGG 0.480836 2_3:-389436 Msa0269480:CDS
ATTTGGCTCCGGTTGGGGAA+GGG 0.486760 2_3:-389662 Msa0269480:CDS
TGAAGATAGGGATATGGTTA+GGG 0.487113 2_3:-389850 Msa0269480:intron
TGGTAGAAAATATGATGCAT+TGG 0.488553 2_3:+390263 None:intergenic
TCGAATAATGTATCTCCAAA+CGG 0.490117 2_3:-389462 Msa0269480:CDS
TAGGGTTAGGGTTAAAGATG+AGG 0.512027 2_3:-389832 Msa0269480:CDS
TTGATAACACGTGTTCCACT+TGG 0.512717 2_3:-389698 Msa0269480:CDS
AGTTGGTAGAGAAGAGGAGG+TGG 0.513985 2_3:-389592 Msa0269480:CDS
CTTTGAATCCATGATGATGT+TGG 0.515510 2_3:+390229 None:intergenic
TGATTCTTCTAGTACTGCTA+TGG 0.523445 2_3:-389493 Msa0269480:CDS
TGAGGAAGTTGGTAGAGAAG+AGG 0.526588 2_3:-389598 Msa0269480:CDS
AGCAGGGATAGCAAAATCCT+CGG 0.529169 2_3:+390001 None:intergenic
CACCATCAACTCCTTCAATA+CGG 0.536830 2_3:+390063 None:intergenic
GGAAGTTGGTAGAGAAGAGG+AGG 0.537250 2_3:-389595 Msa0269480:CDS
CCAGGTGGCGGCTTAATCAT+CGG 0.545523 2_3:+389741 None:intergenic
CAACCTAACCAACATCATCA+TGG 0.546744 2_3:-390237 Msa0269480:CDS
AAGTACACCGATTACGACGC+TGG 0.549499 2_3:-390164 Msa0269480:CDS
GCAGGGATAGCAAAATCCTC+GGG 0.567278 2_3:+390002 None:intergenic
GGAACTCTCATCCCAGGTGG+CGG 0.582853 2_3:+389729 None:intergenic
CACGTGTTATCAACAACCAC+CGG 0.587179 2_3:+389708 None:intergenic
TGATAACACGTGTTCCACTT+GGG 0.588653 2_3:-389697 Msa0269480:CDS
ACGCCTGGAAGCTGGCAAAA+GGG 0.589657 2_3:-389421 Msa0269480:CDS
ATCCTTCAAAAGATCCCAAG+TGG 0.594119 2_3:+389683 None:intergenic
GTTGGGGAAGGGGAAGAAGA+GGG 0.594380 2_3:-389651 Msa0269480:CDS
AGCTCATCAAGCTTCAAAGT+GGG 0.598094 2_3:+389933 None:intergenic
CGATGATTAAGCCGCCACCT+GGG 0.604089 2_3:-389740 Msa0269480:CDS
ACCTGGGATGAGAGTTCCGG+TGG 0.605875 2_3:-389724 Msa0269480:CDS
ACCACCGGAACTCTCATCCC+AGG 0.610818 2_3:+389723 None:intergenic
AAGCTCATCAAGCTTCAAAG+TGG 0.612583 2_3:+389932 None:intergenic
TTTAGGACTTTCTGGACCCG+AGG 0.636314 2_3:-390018 Msa0269480:intron
AGGTGGTGGATAATGAGGCG+AGG 0.647698 2_3:-389575 Msa0269480:CDS
CCTGGAAGCTGGCAAAAGGG+TGG 0.655756 2_3:-389418 Msa0269480:intron
TAGCTTCCCAAGCAGCAGCA+GGG 0.656089 2_3:+389985 None:intergenic
GGTGGCGGCTTAATCATCGG+TGG 0.659281 2_3:+389744 None:intergenic
ACCGGAACTCTCATCCCAGG+TGG 0.716056 2_3:+389726 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACATATTATTATATTTC+AGG + chr2_3:390038-390057 None:intergenic 10.0%
!! ATTACATATTATTATATTTC+AGG + chr2_3:390038-390057 None:intergenic 10.0%
!! AGCTAAAATGACATATTTAA+GGG + chr2_3:390244-390263 None:intergenic 20.0%
!! AGCTAAAATGACATATTTAA+GGG + chr2_3:390244-390263 None:intergenic 20.0%
! ATATTTGATAGATTGAGTCT+TGG + chr2_3:390010-390029 None:intergenic 25.0%
! TGAAGTAAAATAGCTCAAAA+AGG - chr2_3:390058-390077 Msa0269480:intron 25.0%
! AAAAAGTGATCTTTGATCTA+TGG + chr2_3:390199-390218 None:intergenic 25.0%
! CAGCTAAAATGACATATTTA+AGG + chr2_3:390245-390264 None:intergenic 25.0%
!!! CTTAAATATGTCATTTTAGC+TGG - chr2_3:390243-390262 Msa0269480:CDS 25.0%
! ATATTTGATAGATTGAGTCT+TGG + chr2_3:390010-390029 None:intergenic 25.0%
! TGAAGTAAAATAGCTCAAAA+AGG - chr2_3:390058-390077 Msa0269480:intron 25.0%
! AAAAAGTGATCTTTGATCTA+TGG + chr2_3:390199-390218 None:intergenic 25.0%
! CAGCTAAAATGACATATTTA+AGG + chr2_3:390245-390264 None:intergenic 25.0%
!!! CTTAAATATGTCATTTTAGC+TGG - chr2_3:390243-390262 Msa0269480:CDS 25.0%
GATCGAATTTGTAAGAGTTT+AGG - chr2_3:389040-389059 Msa0269480:intron 30.0%
TGAATGAGAAATGTGAAGAT+AGG - chr2_3:389212-389231 Msa0269480:intron 30.0%
GAATGAGAAATGTGAAGATA+GGG - chr2_3:389213-389232 Msa0269480:intron 30.0%
AGTAGTAGTAGTGGTATTAA+TGG - chr2_3:389301-389320 Msa0269480:intron 30.0%
TCGAATAATGTATCTCCAAA+CGG - chr2_3:389613-389632 Msa0269480:intron 30.0%
TCTATGGTTTACTTGTGAAA+GGG + chr2_3:390183-390202 None:intergenic 30.0%
ATCTATGGTTTACTTGTGAA+AGG + chr2_3:390184-390203 None:intergenic 30.0%
GATCGAATTTGTAAGAGTTT+AGG - chr2_3:389040-389059 Msa0269480:intron 30.0%
TGAATGAGAAATGTGAAGAT+AGG - chr2_3:389212-389231 Msa0269480:intron 30.0%
GAATGAGAAATGTGAAGATA+GGG - chr2_3:389213-389232 Msa0269480:intron 30.0%
AGTAGTAGTAGTGGTATTAA+TGG - chr2_3:389301-389320 Msa0269480:intron 30.0%
TCGAATAATGTATCTCCAAA+CGG - chr2_3:389613-389632 Msa0269480:intron 30.0%
TCTATGGTTTACTTGTGAAA+GGG + chr2_3:390183-390202 None:intergenic 30.0%
ATCTATGGTTTACTTGTGAA+AGG + chr2_3:390184-390203 None:intergenic 30.0%
! TGATGTTGGTTAGGTTGTTA+TGG + chr2_3:388835-388854 None:intergenic 35.0%
! AATCCATGATGATGTTGGTT+AGG + chr2_3:388844-388863 None:intergenic 35.0%
! CTTTGAATCCATGATGATGT+TGG + chr2_3:388849-388868 None:intergenic 35.0%
TTCACTTTACACTCGTTCTA+TGG - chr2_3:388967-388986 Msa0269480:intron 35.0%
! TGTAAGAGTTTAGGACTTTC+TGG - chr2_3:389049-389068 Msa0269480:intron 35.0%
GTGAATGATGTGAGAGAATT+AGG - chr2_3:389184-389203 Msa0269480:intron 35.0%
GAAATGTGAAGATAGGGATA+TGG - chr2_3:389219-389238 Msa0269480:intron 35.0%
TGAAGATAGGGATATGGTTA+GGG - chr2_3:389225-389244 Msa0269480:intron 35.0%
GTTAGTAGTAGTAGTAGTAG+TGG - chr2_3:389292-389311 Msa0269480:intron 35.0%
!! TTGGGATCTTTTGAAGGATT+TGG - chr2_3:389396-389415 Msa0269480:intron 35.0%
TGATTCTTCTAGTACTGCTA+TGG - chr2_3:389582-389601 Msa0269480:CDS 35.0%
GGAGATACATTATTCGATCT+AGG + chr2_3:389610-389629 None:intergenic 35.0%
CGAATAATGTATCTCCAAAC+GGG - chr2_3:389614-389633 Msa0269480:intron 35.0%
AATTAAGCGTTTATTACGCC+TGG - chr2_3:389639-389658 Msa0269480:CDS 35.0%
AAGAGGATTAGGAGCTAATT+CGG + chr2_3:389978-389997 None:intergenic 35.0%
! GGGCAAGAATCATGAATTTT+TGG + chr2_3:390224-390243 None:intergenic 35.0%
! TGATGTTGGTTAGGTTGTTA+TGG + chr2_3:388835-388854 None:intergenic 35.0%
! AATCCATGATGATGTTGGTT+AGG + chr2_3:388844-388863 None:intergenic 35.0%
! CTTTGAATCCATGATGATGT+TGG + chr2_3:388849-388868 None:intergenic 35.0%
TTCACTTTACACTCGTTCTA+TGG - chr2_3:388967-388986 Msa0269480:intron 35.0%
! TGTAAGAGTTTAGGACTTTC+TGG - chr2_3:389049-389068 Msa0269480:intron 35.0%
GTGAATGATGTGAGAGAATT+AGG - chr2_3:389184-389203 Msa0269480:intron 35.0%
GAAATGTGAAGATAGGGATA+TGG - chr2_3:389219-389238 Msa0269480:intron 35.0%
TGAAGATAGGGATATGGTTA+GGG - chr2_3:389225-389244 Msa0269480:intron 35.0%
GTTAGTAGTAGTAGTAGTAG+TGG - chr2_3:389292-389311 Msa0269480:intron 35.0%
!! TTGGGATCTTTTGAAGGATT+TGG - chr2_3:389396-389415 Msa0269480:intron 35.0%
TGATTCTTCTAGTACTGCTA+TGG - chr2_3:389582-389601 Msa0269480:CDS 35.0%
GGAGATACATTATTCGATCT+AGG + chr2_3:389610-389629 None:intergenic 35.0%
CGAATAATGTATCTCCAAAC+GGG - chr2_3:389614-389633 Msa0269480:intron 35.0%
AATTAAGCGTTTATTACGCC+TGG - chr2_3:389639-389658 Msa0269480:CDS 35.0%
AAGAGGATTAGGAGCTAATT+CGG + chr2_3:389978-389997 None:intergenic 35.0%
! GGGCAAGAATCATGAATTTT+TGG + chr2_3:390224-390243 None:intergenic 35.0%
CAACCTAACCAACATCATCA+TGG - chr2_3:388838-388857 Msa0269480:intron 40.0%
TCTTCTTTCGATGACTCTTC+TGG - chr2_3:388944-388963 Msa0269480:intron 40.0%
CTTCAATACGGAAGCTAGTA+CGG + chr2_3:389003-389022 None:intergenic 40.0%
TTCCGTATTGAAGGAGTTGA+TGG - chr2_3:389010-389029 Msa0269480:intron 40.0%
CACCATCAACTCCTTCAATA+CGG + chr2_3:389015-389034 None:intergenic 40.0%
AGTGGGAAGAACATCAGAAT+TGG + chr2_3:389128-389147 None:intergenic 40.0%
AGCTCATCAAGCTTCAAAGT+GGG + chr2_3:389145-389164 None:intergenic 40.0%
AAGCTCATCAAGCTTCAAAG+TGG + chr2_3:389146-389165 None:intergenic 40.0%
! GCTTGATGAGCTTGATTTGA+AGG - chr2_3:389153-389172 Msa0269480:intron 40.0%
! GCTTGATTTGAAGGAGAAGA+AGG - chr2_3:389162-389181 Msa0269480:intron 40.0%
GTGAAGATAGGGATATGGTT+AGG - chr2_3:389224-389243 Msa0269480:intron 40.0%
ATAGGGATATGGTTAGGGTT+AGG - chr2_3:389230-389249 Msa0269480:intron 40.0%
TAGGGATATGGTTAGGGTTA+GGG - chr2_3:389231-389250 Msa0269480:intron 40.0%
TAGGGTTAGGGTTAAAGATG+AGG - chr2_3:389243-389262 Msa0269480:intron 40.0%
! TTGATAACACGTGTTCCACT+TGG - chr2_3:389377-389396 Msa0269480:intron 40.0%
TGATAACACGTGTTCCACTT+GGG - chr2_3:389378-389397 Msa0269480:intron 40.0%
! TTCCACTTGGGATCTTTTGA+AGG - chr2_3:389390-389409 Msa0269480:intron 40.0%
ATCCTTCAAAAGATCCCAAG+TGG + chr2_3:389395-389414 None:intergenic 40.0%
!! TCTTTTGAAGGATTTGGCTC+CGG - chr2_3:389402-389421 Msa0269480:intron 40.0%
AGGATTGATGAGATTGTTGC+TGG - chr2_3:389520-389539 Msa0269480:CDS 40.0%
!! TGAGATTGTTGCTGGTCTTA+TGG - chr2_3:389528-389547 Msa0269480:CDS 40.0%
AAACGCTTAATTCTCCCGTT+TGG + chr2_3:389631-389650 None:intergenic 40.0%
!!! TGGCAAAAGGGTGGTTTTTT+GGG - chr2_3:389666-389685 Msa0269480:CDS 40.0%
TCGTTTGGATCTGTCTATGA+AGG - chr2_3:389696-389715 Msa0269480:CDS 40.0%
TGAAGCAAAAGCAGCAAAAG+TGG - chr2_3:389851-389870 Msa0269480:intron 40.0%
AAAAGCAGCAAAAGTGGCTT+TGG - chr2_3:389857-389876 Msa0269480:intron 40.0%
AGAGGATTAGGAGCTAATTC+GGG + chr2_3:389977-389996 None:intergenic 40.0%
GGAGCAAAAGAAAGAGGATT+AGG + chr2_3:389989-390008 None:intergenic 40.0%
AGTCTTGGAGCAAAAGAAAG+AGG + chr2_3:389995-390014 None:intergenic 40.0%
CAACCTAACCAACATCATCA+TGG - chr2_3:388838-388857 Msa0269480:intron 40.0%
TCTTCTTTCGATGACTCTTC+TGG - chr2_3:388944-388963 Msa0269480:intron 40.0%
CTTCAATACGGAAGCTAGTA+CGG + chr2_3:389003-389022 None:intergenic 40.0%
TTCCGTATTGAAGGAGTTGA+TGG - chr2_3:389010-389029 Msa0269480:intron 40.0%
CACCATCAACTCCTTCAATA+CGG + chr2_3:389015-389034 None:intergenic 40.0%
AGTGGGAAGAACATCAGAAT+TGG + chr2_3:389128-389147 None:intergenic 40.0%
AGCTCATCAAGCTTCAAAGT+GGG + chr2_3:389145-389164 None:intergenic 40.0%
AAGCTCATCAAGCTTCAAAG+TGG + chr2_3:389146-389165 None:intergenic 40.0%
! GCTTGATGAGCTTGATTTGA+AGG - chr2_3:389153-389172 Msa0269480:intron 40.0%
! GCTTGATTTGAAGGAGAAGA+AGG - chr2_3:389162-389181 Msa0269480:intron 40.0%
GTGAAGATAGGGATATGGTT+AGG - chr2_3:389224-389243 Msa0269480:intron 40.0%
ATAGGGATATGGTTAGGGTT+AGG - chr2_3:389230-389249 Msa0269480:intron 40.0%
TAGGGATATGGTTAGGGTTA+GGG - chr2_3:389231-389250 Msa0269480:intron 40.0%
TAGGGTTAGGGTTAAAGATG+AGG - chr2_3:389243-389262 Msa0269480:intron 40.0%
! TTGATAACACGTGTTCCACT+TGG - chr2_3:389377-389396 Msa0269480:intron 40.0%
TGATAACACGTGTTCCACTT+GGG - chr2_3:389378-389397 Msa0269480:intron 40.0%
! TTCCACTTGGGATCTTTTGA+AGG - chr2_3:389390-389409 Msa0269480:intron 40.0%
ATCCTTCAAAAGATCCCAAG+TGG + chr2_3:389395-389414 None:intergenic 40.0%
!! TCTTTTGAAGGATTTGGCTC+CGG - chr2_3:389402-389421 Msa0269480:intron 40.0%
AGGATTGATGAGATTGTTGC+TGG - chr2_3:389520-389539 Msa0269480:CDS 40.0%
!! TGAGATTGTTGCTGGTCTTA+TGG - chr2_3:389528-389547 Msa0269480:CDS 40.0%
AAACGCTTAATTCTCCCGTT+TGG + chr2_3:389631-389650 None:intergenic 40.0%
!!! TGGCAAAAGGGTGGTTTTTT+GGG - chr2_3:389666-389685 Msa0269480:CDS 40.0%
TCGTTTGGATCTGTCTATGA+AGG - chr2_3:389696-389715 Msa0269480:CDS 40.0%
TGAAGCAAAAGCAGCAAAAG+TGG - chr2_3:389851-389870 Msa0269480:intron 40.0%
AAAAGCAGCAAAAGTGGCTT+TGG - chr2_3:389857-389876 Msa0269480:intron 40.0%
AGAGGATTAGGAGCTAATTC+GGG + chr2_3:389977-389996 None:intergenic 40.0%
GGAGCAAAAGAAAGAGGATT+AGG + chr2_3:389989-390008 None:intergenic 40.0%
AGTCTTGGAGCAAAAGAAAG+AGG + chr2_3:389995-390014 None:intergenic 40.0%
AGATGATCCAGCGTCGTAAT+CGG + chr2_3:388921-388940 None:intergenic 45.0%
! CGTACTAGCTTCCGTATTGA+AGG - chr2_3:389001-389020 Msa0269480:intron 45.0%
AGCAGGGATAGCAAAATCCT+CGG + chr2_3:389077-389096 None:intergenic 45.0%
CACGTGTTATCAACAACCAC+CGG + chr2_3:389370-389389 None:intergenic 45.0%
!! TGAGGAAGTTGGTAGAGAAG+AGG - chr2_3:389477-389496 Msa0269480:CDS 45.0%
!!! CTGGCAAAAGGGTGGTTTTT+TGG - chr2_3:389665-389684 Msa0269480:CDS 45.0%
!!! GGCAAAAGGGTGGTTTTTTG+GGG - chr2_3:389667-389686 Msa0269480:CDS 45.0%
!!! GCAAAAGGGTGGTTTTTTGG+GGG - chr2_3:389668-389687 Msa0269480:CDS 45.0%
!!! CAAAAGGGTGGTTTTTTGGG+GGG - chr2_3:389669-389688 Msa0269480:CDS 45.0%
CAAAGTCAGAAACTTGGCAC+GGG + chr2_3:389916-389935 None:intergenic 45.0%
CCAAAGTCAGAAACTTGGCA+CGG + chr2_3:389917-389936 None:intergenic 45.0%
CGTGCCAAGTTTCTGACTTT+GGG - chr2_3:389915-389934 Msa0269480:CDS 45.0%
GTGCCAAGTTTCTGACTTTG+GGG - chr2_3:389916-389935 Msa0269480:CDS 45.0%
TGCCAAGTTTCTGACTTTGG+GGG - chr2_3:389917-389936 Msa0269480:CDS 45.0%
ATCCCCCAAAGTCAGAAACT+TGG + chr2_3:389922-389941 None:intergenic 45.0%
AGATGATCCAGCGTCGTAAT+CGG + chr2_3:388921-388940 None:intergenic 45.0%
! CGTACTAGCTTCCGTATTGA+AGG - chr2_3:389001-389020 Msa0269480:intron 45.0%
AGCAGGGATAGCAAAATCCT+CGG + chr2_3:389077-389096 None:intergenic 45.0%
CACGTGTTATCAACAACCAC+CGG + chr2_3:389370-389389 None:intergenic 45.0%
!! TGAGGAAGTTGGTAGAGAAG+AGG - chr2_3:389477-389496 Msa0269480:CDS 45.0%
!!! CTGGCAAAAGGGTGGTTTTT+TGG - chr2_3:389665-389684 Msa0269480:CDS 45.0%
!!! GGCAAAAGGGTGGTTTTTTG+GGG - chr2_3:389667-389686 Msa0269480:CDS 45.0%
!!! GCAAAAGGGTGGTTTTTTGG+GGG - chr2_3:389668-389687 Msa0269480:CDS 45.0%
!!! CAAAAGGGTGGTTTTTTGGG+GGG - chr2_3:389669-389688 Msa0269480:CDS 45.0%
CAAAGTCAGAAACTTGGCAC+GGG + chr2_3:389916-389935 None:intergenic 45.0%
CCAAAGTCAGAAACTTGGCA+CGG + chr2_3:389917-389936 None:intergenic 45.0%
CGTGCCAAGTTTCTGACTTT+GGG - chr2_3:389915-389934 Msa0269480:CDS 45.0%
GTGCCAAGTTTCTGACTTTG+GGG - chr2_3:389916-389935 Msa0269480:CDS 45.0%
TGCCAAGTTTCTGACTTTGG+GGG - chr2_3:389917-389936 Msa0269480:CDS 45.0%
ATCCCCCAAAGTCAGAAACT+TGG + chr2_3:389922-389941 None:intergenic 45.0%
! AAGTACACCGATTACGACGC+TGG - chr2_3:388911-388930 Msa0269480:intron 50.0%
! TTTAGGACTTTCTGGACCCG+AGG - chr2_3:389057-389076 Msa0269480:intron 50.0%
GCAGGGATAGCAAAATCCTC+GGG + chr2_3:389076-389095 None:intergenic 50.0%
! TTGAAGGATTTGGCTCCGGT+TGG - chr2_3:389406-389425 Msa0269480:intron 50.0%
! TGAAGGATTTGGCTCCGGTT+GGG - chr2_3:389407-389426 Msa0269480:intron 50.0%
!! GGGAAGAAGAGGGTTTTGAC+CGG - chr2_3:389434-389453 Msa0269480:CDS 50.0%
!! GGAAGAAGAGGGTTTTGACC+GGG - chr2_3:389435-389454 Msa0269480:CDS 50.0%
GAGAGTGAAGGTGAGGAAGT+TGG - chr2_3:389466-389485 Msa0269480:CDS 50.0%
!! GGAAGTTGGTAGAGAAGAGG+AGG - chr2_3:389480-389499 Msa0269480:CDS 50.0%
!! AGTTGGTAGAGAAGAGGAGG+TGG - chr2_3:389483-389502 Msa0269480:CDS 50.0%
!! AGAGGAGGTGGTGGATAATG+AGG - chr2_3:389495-389514 Msa0269480:CDS 50.0%
CGTTTATTACGCCTGGAAGC+TGG - chr2_3:389646-389665 Msa0269480:CDS 50.0%
!! TTTTTGGGGGGTGGTTCGTT+TGG - chr2_3:389681-389700 Msa0269480:CDS 50.0%
!! AGCAGCAAAAGTGGCTTTGG+AGG - chr2_3:389860-389879 Msa0269480:intron 50.0%
!! GCAGCAAAAGTGGCTTTGGA+GGG - chr2_3:389861-389880 Msa0269480:intron 50.0%
CCGTGCCAAGTTTCTGACTT+TGG - chr2_3:389914-389933 Msa0269480:CDS 50.0%
! AAGTACACCGATTACGACGC+TGG - chr2_3:388911-388930 Msa0269480:intron 50.0%
! TTTAGGACTTTCTGGACCCG+AGG - chr2_3:389057-389076 Msa0269480:intron 50.0%
GCAGGGATAGCAAAATCCTC+GGG + chr2_3:389076-389095 None:intergenic 50.0%
! TTGAAGGATTTGGCTCCGGT+TGG - chr2_3:389406-389425 Msa0269480:intron 50.0%
! TGAAGGATTTGGCTCCGGTT+GGG - chr2_3:389407-389426 Msa0269480:intron 50.0%
!! GGGAAGAAGAGGGTTTTGAC+CGG - chr2_3:389434-389453 Msa0269480:CDS 50.0%
!! GGAAGAAGAGGGTTTTGACC+GGG - chr2_3:389435-389454 Msa0269480:CDS 50.0%
GAGAGTGAAGGTGAGGAAGT+TGG - chr2_3:389466-389485 Msa0269480:CDS 50.0%
!! GGAAGTTGGTAGAGAAGAGG+AGG - chr2_3:389480-389499 Msa0269480:CDS 50.0%
!! AGTTGGTAGAGAAGAGGAGG+TGG - chr2_3:389483-389502 Msa0269480:CDS 50.0%
!! AGAGGAGGTGGTGGATAATG+AGG - chr2_3:389495-389514 Msa0269480:CDS 50.0%
CGTTTATTACGCCTGGAAGC+TGG - chr2_3:389646-389665 Msa0269480:CDS 50.0%
!! TTTTTGGGGGGTGGTTCGTT+TGG - chr2_3:389681-389700 Msa0269480:CDS 50.0%
!! AGCAGCAAAAGTGGCTTTGG+AGG - chr2_3:389860-389879 Msa0269480:intron 50.0%
!! GCAGCAAAAGTGGCTTTGGA+GGG - chr2_3:389861-389880 Msa0269480:intron 50.0%
CCGTGCCAAGTTTCTGACTT+TGG - chr2_3:389914-389933 Msa0269480:CDS 50.0%
GCATTGCGACGCTCGAGTTT+AGG + chr2_3:388887-388906 None:intergenic 55.0%
TTGCTATCCCTGCTGCTGCT+TGG - chr2_3:389083-389102 Msa0269480:intron 55.0%
! TGCTATCCCTGCTGCTGCTT+GGG - chr2_3:389084-389103 Msa0269480:intron 55.0%
TAGCTTCCCAAGCAGCAGCA+GGG + chr2_3:389093-389112 None:intergenic 55.0%
ATAGCTTCCCAAGCAGCAGC+AGG + chr2_3:389094-389113 None:intergenic 55.0%
! CCAGGTGGCGGCTTAATCAT+CGG + chr2_3:389337-389356 None:intergenic 55.0%
CGATGATTAAGCCGCCACCT+GGG - chr2_3:389335-389354 Msa0269480:intron 55.0%
! GAAGGATTTGGCTCCGGTTG+GGG - chr2_3:389408-389427 Msa0269480:intron 55.0%
! ATTTGGCTCCGGTTGGGGAA+GGG - chr2_3:389413-389432 Msa0269480:intron 55.0%
TCTTCTTCCCCTTCCCCAAC+CGG + chr2_3:389424-389443 None:intergenic 55.0%
GTTGGGGAAGGGGAAGAAGA+GGG - chr2_3:389424-389443 Msa0269480:CDS 55.0%
!! AGAGGGTTTTGACCGGGAAG+TGG - chr2_3:389441-389460 Msa0269480:CDS 55.0%
CTTCACTCTCCTCCACTTCC+CGG + chr2_3:389456-389475 None:intergenic 55.0%
AGTGGAGGAGAGTGAAGGTG+AGG - chr2_3:389459-389478 Msa0269480:CDS 55.0%
TGGTAGAGAAGAGGAGGTGG+TGG - chr2_3:389486-389505 Msa0269480:CDS 55.0%
!! AGGTGGTGGATAATGAGGCG+AGG - chr2_3:389500-389519 Msa0269480:CDS 55.0%
TACGCCTGGAAGCTGGCAAA+AGG - chr2_3:389653-389672 Msa0269480:CDS 55.0%
ACGCCTGGAAGCTGGCAAAA+GGG - chr2_3:389654-389673 Msa0269480:CDS 55.0%
!!! AAGGGTGGTTTTTTGGGGGG+TGG - chr2_3:389672-389691 Msa0269480:CDS 55.0%
!! GCAAAAGTGGCTTTGGAGGG+TGG - chr2_3:389864-389883 Msa0269480:intron 55.0%
GGCAGTGCCAATAGTTGGCA+CGG + chr2_3:389895-389914 None:intergenic 55.0%
GCATTGCGACGCTCGAGTTT+AGG + chr2_3:388887-388906 None:intergenic 55.0%
TTGCTATCCCTGCTGCTGCT+TGG - chr2_3:389083-389102 Msa0269480:intron 55.0%
! TGCTATCCCTGCTGCTGCTT+GGG - chr2_3:389084-389103 Msa0269480:intron 55.0%
TAGCTTCCCAAGCAGCAGCA+GGG + chr2_3:389093-389112 None:intergenic 55.0%
ATAGCTTCCCAAGCAGCAGC+AGG + chr2_3:389094-389113 None:intergenic 55.0%
! CCAGGTGGCGGCTTAATCAT+CGG + chr2_3:389337-389356 None:intergenic 55.0%
CGATGATTAAGCCGCCACCT+GGG - chr2_3:389335-389354 Msa0269480:intron 55.0%
! GAAGGATTTGGCTCCGGTTG+GGG - chr2_3:389408-389427 Msa0269480:intron 55.0%
! ATTTGGCTCCGGTTGGGGAA+GGG - chr2_3:389413-389432 Msa0269480:intron 55.0%
TCTTCTTCCCCTTCCCCAAC+CGG + chr2_3:389424-389443 None:intergenic 55.0%
GTTGGGGAAGGGGAAGAAGA+GGG - chr2_3:389424-389443 Msa0269480:CDS 55.0%
!! AGAGGGTTTTGACCGGGAAG+TGG - chr2_3:389441-389460 Msa0269480:CDS 55.0%
CTTCACTCTCCTCCACTTCC+CGG + chr2_3:389456-389475 None:intergenic 55.0%
AGTGGAGGAGAGTGAAGGTG+AGG - chr2_3:389459-389478 Msa0269480:CDS 55.0%
TGGTAGAGAAGAGGAGGTGG+TGG - chr2_3:389486-389505 Msa0269480:CDS 55.0%
!! AGGTGGTGGATAATGAGGCG+AGG - chr2_3:389500-389519 Msa0269480:CDS 55.0%
TACGCCTGGAAGCTGGCAAA+AGG - chr2_3:389653-389672 Msa0269480:CDS 55.0%
ACGCCTGGAAGCTGGCAAAA+GGG - chr2_3:389654-389673 Msa0269480:CDS 55.0%
!!! AAGGGTGGTTTTTTGGGGGG+TGG - chr2_3:389672-389691 Msa0269480:CDS 55.0%
!! GCAAAAGTGGCTTTGGAGGG+TGG - chr2_3:389864-389883 Msa0269480:intron 55.0%
GGCAGTGCCAATAGTTGGCA+CGG + chr2_3:389895-389914 None:intergenic 55.0%
! GGTGGCGGCTTAATCATCGG+TGG + chr2_3:389334-389353 None:intergenic 60.0%
CCGATGATTAAGCCGCCACC+TGG - chr2_3:389334-389353 Msa0269480:intron 60.0%
GGAACTCTCATCCCAGGTGG+CGG + chr2_3:389349-389368 None:intergenic 60.0%
GCCACCTGGGATGAGAGTTC+CGG - chr2_3:389348-389367 Msa0269480:intron 60.0%
ACCGGAACTCTCATCCCAGG+TGG + chr2_3:389352-389371 None:intergenic 60.0%
ACCTGGGATGAGAGTTCCGG+TGG - chr2_3:389351-389370 Msa0269480:intron 60.0%
ACCACCGGAACTCTCATCCC+AGG + chr2_3:389355-389374 None:intergenic 60.0%
! GATTTGGCTCCGGTTGGGGA+AGG - chr2_3:389412-389431 Msa0269480:intron 60.0%
! TTTGGCTCCGGTTGGGGAAG+GGG - chr2_3:389414-389433 Msa0269480:intron 60.0%
GGTTGGGGAAGGGGAAGAAG+AGG - chr2_3:389423-389442 Msa0269480:CDS 60.0%
!! GGGTTTTGACCGGGAAGTGG+AGG - chr2_3:389444-389463 Msa0269480:CDS 60.0%
CGGGAAGTGGAGGAGAGTGA+AGG - chr2_3:389454-389473 Msa0269480:CDS 60.0%
! CCACCCTTTTGCCAGCTTCC+AGG + chr2_3:389660-389679 None:intergenic 60.0%
CCTGGAAGCTGGCAAAAGGG+TGG - chr2_3:389657-389676 Msa0269480:CDS 60.0%
!! AGTGGCTTTGGAGGGTGGCA+CGG - chr2_3:389869-389888 Msa0269480:intron 60.0%
GCACGGGCAGTGCCAATAGT+TGG + chr2_3:389900-389919 None:intergenic 60.0%
! GGTGGCGGCTTAATCATCGG+TGG + chr2_3:389334-389353 None:intergenic 60.0%
CCGATGATTAAGCCGCCACC+TGG - chr2_3:389334-389353 Msa0269480:intron 60.0%
GGAACTCTCATCCCAGGTGG+CGG + chr2_3:389349-389368 None:intergenic 60.0%
GCCACCTGGGATGAGAGTTC+CGG - chr2_3:389348-389367 Msa0269480:intron 60.0%
ACCGGAACTCTCATCCCAGG+TGG + chr2_3:389352-389371 None:intergenic 60.0%
ACCTGGGATGAGAGTTCCGG+TGG - chr2_3:389351-389370 Msa0269480:intron 60.0%
ACCACCGGAACTCTCATCCC+AGG + chr2_3:389355-389374 None:intergenic 60.0%
! GATTTGGCTCCGGTTGGGGA+AGG - chr2_3:389412-389431 Msa0269480:intron 60.0%
! TTTGGCTCCGGTTGGGGAAG+GGG - chr2_3:389414-389433 Msa0269480:intron 60.0%
GGTTGGGGAAGGGGAAGAAG+AGG - chr2_3:389423-389442 Msa0269480:CDS 60.0%
!! GGGTTTTGACCGGGAAGTGG+AGG - chr2_3:389444-389463 Msa0269480:CDS 60.0%
CGGGAAGTGGAGGAGAGTGA+AGG - chr2_3:389454-389473 Msa0269480:CDS 60.0%
! CCACCCTTTTGCCAGCTTCC+AGG + chr2_3:389660-389679 None:intergenic 60.0%
CCTGGAAGCTGGCAAAAGGG+TGG - chr2_3:389657-389676 Msa0269480:CDS 60.0%
!! AGTGGCTTTGGAGGGTGGCA+CGG - chr2_3:389869-389888 Msa0269480:intron 60.0%
GCACGGGCAGTGCCAATAGT+TGG + chr2_3:389900-389919 None:intergenic 60.0%
GGCACGGCCGTGCCAACTAT+TGG - chr2_3:389885-389904 Msa0269480:intron 65.0%
GGCACGGCCGTGCCAACTAT+TGG - chr2_3:389885-389904 Msa0269480:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 388815 390282 388815 ID=Msa0269480;Name=Msa0269480
chr2_3 mRNA 388815 390282 388815 ID=Msa0269480-mRNA-1;Parent=Msa0269480;Name=Msa0269480-mRNA-1;_AED=0.35;_eAED=0.37;_QI=0|0|0|0.8|0.25|0.4|5|0|274
chr2_3 exon 390066 390282 390066 ID=Msa0269480-mRNA-1:exon:227;Parent=Msa0269480-mRNA-1
chr2_3 exon 389892 390035 389892 ID=Msa0269480-mRNA-1:exon:226;Parent=Msa0269480-mRNA-1
chr2_3 exon 389628 389867 389628 ID=Msa0269480-mRNA-1:exon:225;Parent=Msa0269480-mRNA-1
chr2_3 exon 389419 389621 389419 ID=Msa0269480-mRNA-1:exon:224;Parent=Msa0269480-mRNA-1
chr2_3 exon 388815 388835 388815 ID=Msa0269480-mRNA-1:exon:223;Parent=Msa0269480-mRNA-1
chr2_3 CDS 390066 390282 390066 ID=Msa0269480-mRNA-1:cds;Parent=Msa0269480-mRNA-1
chr2_3 CDS 389892 390035 389892 ID=Msa0269480-mRNA-1:cds;Parent=Msa0269480-mRNA-1
chr2_3 CDS 389628 389867 389628 ID=Msa0269480-mRNA-1:cds;Parent=Msa0269480-mRNA-1
chr2_3 CDS 389419 389621 389419 ID=Msa0269480-mRNA-1:cds;Parent=Msa0269480-mRNA-1
chr2_3 CDS 388815 388835 388815 ID=Msa0269480-mRNA-1:cds;Parent=Msa0269480-mRNA-1
Gene Sequence

>Msa0269480

ATGCATCATATTTTCTACCATAACAACCTAACCAACATCATCATGGATTCAAAGAAGCTTCGAAGAAAACCTAAACTCGAGCGTCGCAATGCTCAAAAGTACACCGATTACGACGCTGGATCATCTTCATCTTCTTTCGATGACTCTTCTGGTTCACTTTACACTCGTTCTATGGAGTTATACGACCGTACTAGCTTCCGTATTGAAGGAGTTGATGGACTTTCTGGACCCGAGGATTTTGCTATCCCTGCTGCTGCTTGGGAAGCTATGAAGATTCGATCCAATTCTGATGTTCTTCCCACTTTGAAGCTTGATGAGCTTGATTTGAAGGAGAAGAAGGTGAATGATGTGAGAGAATTAGATAGGGATATGGTTAGGGTTAGGGTTAAAGATGAGGTTGATGACAGTGAGAGTGTTGTTGTTGTTAGTAGTAGTAGTAGTAGTGGTATTAATGGAACTCGTCCACCGATGATTAAGCCGCCACCTGGGATGAGAGTTCCGGTGGTTGTTGATAACACGTGTTCCACTTGGGATCTTTTGAAGGATTTGGCTCCGGTTGGGGAAGGGGAAGAAGAGGGTTTTGACCGGGAAGTGGAGGAGAGTGAGGAAGTTGGTAGAGAAGAGGAGGTGGTGGATAATGAGGCGAGGATTGATGAGATTGTTGCTGGTCTTATGGAATCGAGTTTGTTTAGTGATTCGAATGAAGATGATTCTTCTAGTACTGCTATGGAACCTAGATCGAATAATGTATCTCCAAACGGGAGAATTAAGCGTTTATTACGCCTGGAAGCTGGCAAAAGGGTGCTGGAGAAGAAGAACCTTTAG

Protein sequence

>Msa0269480

MHHIFYHNNLTNIIMDSKKLRRKPKLERRNAQKYTDYDAGSSSSSFDDSSGSLYTRSMELYDRTSFRIEGVDGLSGPEDFAIPAAAWEAMKIRSNSDVLPTLKLDELDLKEKKVNDVRELDRDMVRVRVKDEVDDSESVVVVSSSSSSGINGTRPPMIKPPPGMRVPVVVDNTCSTWDLLKDLAPVGEGEEEGFDREVEESEEVGREEEVVDNEARIDEIVAGLMESSLFSDSNEDDSSSTAMEPRSNNVSPNGRIKRLLRLEAGKRVLEKKNL*