Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270870 | KAG4377430.1 | 90.196 | 51 | 5 | 0 | 70 | 120 | 44 | 94 | 1.25e-22 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270870 | sp|P53681|CRK_DAUCA | 88.235 | 51 | 6 | 0 | 70 | 120 | 230 | 280 | 3.60e-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270870 | A0A6M2F8B2 | 69.014 | 71 | 19 | 1 | 70 | 140 | 2 | 69 | 4.43e-23 | 98.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0270870 | Msa0495750 | 0.826407 | 2.759451e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270870 | MtrunA17_Chr4g0045261 | 96.000 | 50 | 2 | 0 | 71 | 120 | 220 | 269 | 8.08e-26 | 103 |
| Msa0270870 | MtrunA17_Chr8g0374701 | 88.000 | 50 | 6 | 0 | 71 | 120 | 211 | 260 | 3.47e-23 | 96.3 |
| Msa0270870 | MtrunA17_Chr5g0402551 | 80.000 | 50 | 10 | 0 | 71 | 120 | 217 | 266 | 1.46e-21 | 91.7 |
| Msa0270870 | MtrunA17_Chr3g0127571 | 78.000 | 50 | 11 | 0 | 71 | 120 | 221 | 270 | 4.94e-21 | 90.1 |
| Msa0270870 | MtrunA17_Chr7g0276111 | 78.000 | 50 | 11 | 0 | 71 | 120 | 227 | 276 | 5.79e-21 | 90.1 |
| Msa0270870 | MtrunA17_Chr7g0256001 | 74.510 | 51 | 13 | 0 | 70 | 120 | 223 | 273 | 3.14e-20 | 87.8 |
| Msa0270870 | MtrunA17_Chr5g0444181 | 56.863 | 51 | 21 | 1 | 70 | 120 | 170 | 219 | 7.41e-12 | 62.4 |
| Msa0270870 | MtrunA17_Chr5g0405421 | 46.835 | 79 | 30 | 3 | 71 | 148 | 179 | 246 | 1.93e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270870 | AT3G50530.2 | 86.000 | 50 | 7 | 0 | 71 | 120 | 231 | 280 | 4.43e-23 | 96.7 |
| Msa0270870 | AT3G50530.1 | 86.000 | 50 | 7 | 0 | 71 | 120 | 231 | 280 | 4.45e-23 | 96.7 |
| Msa0270870 | AT3G19100.1 | 86.000 | 50 | 7 | 0 | 71 | 120 | 227 | 276 | 1.09e-22 | 95.5 |
| Msa0270870 | AT1G49580.1 | 82.000 | 50 | 9 | 0 | 71 | 120 | 233 | 282 | 4.05e-22 | 93.6 |
| Msa0270870 | AT2G41140.1 | 82.353 | 51 | 9 | 0 | 70 | 120 | 205 | 255 | 7.52e-22 | 92.8 |
| Msa0270870 | AT2G46700.2 | 80.000 | 50 | 10 | 0 | 71 | 120 | 45 | 94 | 3.68e-21 | 90.5 |
| Msa0270870 | AT2G46700.3 | 80.000 | 50 | 10 | 0 | 71 | 120 | 45 | 94 | 3.68e-21 | 90.5 |
| Msa0270870 | AT2G46700.1 | 80.000 | 50 | 10 | 0 | 71 | 120 | 226 | 275 | 4.99e-21 | 90.5 |
| Msa0270870 | AT3G56760.1 | 78.431 | 51 | 11 | 0 | 70 | 120 | 206 | 256 | 2.38e-20 | 88.6 |
| Msa0270870 | AT5G24430.1 | 72.000 | 50 | 14 | 0 | 71 | 120 | 226 | 275 | 3.18e-17 | 79.7 |
| Msa0270870 | AT3G49370.1 | 70.000 | 50 | 15 | 0 | 71 | 120 | 225 | 274 | 5.08e-17 | 79.0 |
| Msa0270870 | AT5G66210.6 | 60.784 | 51 | 19 | 1 | 71 | 120 | 142 | 192 | 1.16e-12 | 66.2 |
| Msa0270870 | AT5G66210.4 | 60.784 | 51 | 19 | 1 | 71 | 120 | 142 | 192 | 1.16e-12 | 66.2 |
| Msa0270870 | AT5G66210.5 | 60.784 | 51 | 19 | 1 | 71 | 120 | 142 | 192 | 1.37e-12 | 65.9 |
| Msa0270870 | AT5G66210.1 | 60.784 | 51 | 19 | 1 | 71 | 120 | 142 | 192 | 1.42e-12 | 65.9 |
| Msa0270870 | AT5G66210.2 | 60.784 | 51 | 19 | 1 | 71 | 120 | 142 | 192 | 1.42e-12 | 65.9 |
| Msa0270870 | AT5G66210.3 | 60.784 | 51 | 19 | 1 | 71 | 120 | 142 | 192 | 1.42e-12 | 65.9 |
| Msa0270870 | AT2G17890.1 | 49.367 | 79 | 28 | 3 | 71 | 148 | 188 | 255 | 1.79e-12 | 65.9 |
| Msa0270870 | AT5G12480.1 | 56.140 | 57 | 23 | 2 | 65 | 120 | 132 | 187 | 2.75e-11 | 62.4 |
| Msa0270870 | AT4G36070.1 | 54.902 | 51 | 22 | 1 | 71 | 120 | 151 | 201 | 6.82e-11 | 61.2 |
| Msa0270870 | AT4G36070.2 | 54.902 | 51 | 22 | 1 | 71 | 120 | 151 | 201 | 7.61e-11 | 60.8 |
Find 29 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAATATATTTATTTAAAT+TGG | 0.156410 | 2_3:-2206494 | Msa0270870:three_prime_UTR |
| AGTGATCTTAGTATCAAAAT+AGG | 0.352892 | 2_3:-2208405 | Msa0270870:CDS |
| GTAATATTCCTAAATATTGT+TGG | 0.362172 | 2_3:+2206686 | None:intergenic |
| ATGATTACCCACTAATGTAT+TGG | 0.388887 | 2_3:-2206633 | Msa0270870:CDS |
| CAGGATCCATGCACTTCTAT+TGG | 0.395232 | 2_3:+2206759 | None:intergenic |
| ATCAGTTATTACTGTGCCTA+AGG | 0.454750 | 2_3:-2208606 | None:intergenic |
| TCACTAGAGACATCAGATAT+CGG | 0.481120 | 2_3:+2208210 | None:intergenic |
| TCACTAGAGACATCAGATAT+CGG | 0.481120 | 2_3:+2208423 | None:intergenic |
| TATTCCTAAATATTGTTGGC+CGG | 0.498924 | 2_3:+2206690 | None:intergenic |
| AGTGATCTTAGCATCGAAAT+CGG | 0.501640 | 2_3:-2208192 | Msa0270870:CDS |
| ATACATCAGACTGCACAAAC+AGG | 0.513205 | 2_3:+2206740 | None:intergenic |
| TCAACAACAGAGTGAAACTT+TGG | 0.514255 | 2_3:+2206802 | None:intergenic |
| GACGTTTCAGGTTATGTGAA+GGG | 0.515873 | 2_3:-2207248 | Msa0270870:intron |
| AGATGATGACAAGGCTGTCA+TGG | 0.551342 | 2_3:-2207009 | Msa0270870:CDS |
| TTCGTGCTTTGCACTTCACA+AGG | 0.556850 | 2_3:-2208166 | Msa0270870:intron |
| TTCATGCTTTGCACTTCACA+AGG | 0.559618 | 2_3:-2208379 | Msa0270870:intron |
| CTGATGTATCTATTGTAATG+AGG | 0.567651 | 2_3:-2206726 | Msa0270870:CDS |
| CGACGTTTCAGGTTATGTGA+AGG | 0.570325 | 2_3:-2207249 | Msa0270870:intron |
| GCATATGCAATCATTCAGCT+AGG | 0.575476 | 2_3:-2208248 | Msa0270870:CDS |
| ACGTTTCAGGTTATGTGAAG+GGG | 0.578083 | 2_3:-2207247 | Msa0270870:intron |
| TGAAACTTTGGTGTAAGCAT+AGG | 0.579401 | 2_3:+2206814 | None:intergenic |
| AAAGTTTCACTCTGTTGTTG+AGG | 0.582670 | 2_3:-2206800 | Msa0270870:CDS |
| GCGGTACCAATAGAAGTGCA+TGG | 0.619785 | 2_3:-2206765 | Msa0270870:CDS |
| CGTTTCAGGTTATGTGAAGG+GGG | 0.632420 | 2_3:-2207246 | Msa0270870:intron |
| ATGATTGCATATGCTAGACA+TGG | 0.634319 | 2_3:+2208257 | None:intergenic |
| GTTGAGGATAGCAGCAGATG+CGG | 0.641502 | 2_3:-2206784 | Msa0270870:CDS |
| TATTAGACATGATACTGTCA+AGG | 0.648573 | 2_3:-2207218 | Msa0270870:intron |
| GCACAGAGATCTTAAGCCTG+AGG | 0.658568 | 2_3:-2206940 | Msa0270870:intron |
| ATACTCAGAAGATGATGACA+AGG | 0.658965 | 2_3:-2207018 | Msa0270870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATATTTATTTAAAT+TGG | - | chr2_3:2208594-2208613 | Msa0270870:intron | 0.0% |
| !! | AATAATATATTTATTTAAAT+TGG | - | chr2_3:2208594-2208613 | Msa0270870:intron | 0.0% |
| !!! | AACAATATTTTGATTTTTTT+GGG | - | chr2_3:2207316-2207335 | Msa0270870:intron | 10.0% |
| !! | TAATCATATTTAAATATCTT+AGG | - | chr2_3:2208228-2208247 | Msa0270870:CDS | 10.0% |
| !! | AATCATATTTAAATATCTTA+GGG | - | chr2_3:2208229-2208248 | Msa0270870:CDS | 10.0% |
| !!! | ATATTACTTAATCTAATTTT+TGG | - | chr2_3:2208418-2208437 | Msa0270870:CDS | 10.0% |
| !!! | AACAATATTTTGATTTTTTT+GGG | - | chr2_3:2207316-2207335 | Msa0270870:intron | 10.0% |
| !! | TAATCATATTTAAATATCTT+AGG | - | chr2_3:2208228-2208247 | Msa0270870:CDS | 10.0% |
| !! | AATCATATTTAAATATCTTA+GGG | - | chr2_3:2208229-2208248 | Msa0270870:CDS | 10.0% |
| !!! | ATATTACTTAATCTAATTTT+TGG | - | chr2_3:2208418-2208437 | Msa0270870:CDS | 10.0% |
| !! | AATTATTATTTGTGTATTAC+AGG | - | chr2_3:2206642-2206661 | Msa0270870:CDS | 15.0% |
| !!! | CAACAATATTTTGATTTTTT+TGG | - | chr2_3:2207315-2207334 | Msa0270870:intron | 15.0% |
| !!! | ACAATATTTTGATTTTTTTG+GGG | - | chr2_3:2207317-2207336 | Msa0270870:intron | 15.0% |
| !! | AATTATTATTTGTGTATTAC+AGG | - | chr2_3:2206642-2206661 | Msa0270870:CDS | 15.0% |
| !!! | CAACAATATTTTGATTTTTT+TGG | - | chr2_3:2207315-2207334 | Msa0270870:intron | 15.0% |
| !!! | ACAATATTTTGATTTTTTTG+GGG | - | chr2_3:2207317-2207336 | Msa0270870:intron | 15.0% |
| !! | TTAGTCTATTATTGTATACT+AGG | - | chr2_3:2206551-2206570 | Msa0270870:three_prime_UTR | 20.0% |
| !! | TGAATATGCAATAACATATA+AGG | + | chr2_3:2206750-2206769 | None:intergenic | 20.0% |
| !! | TATGCAATAACATATAAGAA+AGG | + | chr2_3:2206963-2206982 | None:intergenic | 20.0% |
| !!! | CTGACTTTTATTTAATCTTA+TGG | - | chr2_3:2207278-2207297 | Msa0270870:intron | 20.0% |
| !! | TAAATATAAACAAAATCCAC+AGG | + | chr2_3:2207501-2207520 | None:intergenic | 20.0% |
| !!! | ATTAGATAGTTTTTCACAAA+CGG | - | chr2_3:2207634-2207653 | Msa0270870:intron | 20.0% |
| !! | GTAATATTCCTAAATATTGT+TGG | + | chr2_3:2208405-2208424 | None:intergenic | 20.0% |
| !! | TTAGTCTATTATTGTATACT+AGG | - | chr2_3:2206551-2206570 | Msa0270870:three_prime_UTR | 20.0% |
| !! | TGAATATGCAATAACATATA+AGG | + | chr2_3:2206750-2206769 | None:intergenic | 20.0% |
| !! | TATGCAATAACATATAAGAA+AGG | + | chr2_3:2206963-2206982 | None:intergenic | 20.0% |
| !!! | CTGACTTTTATTTAATCTTA+TGG | - | chr2_3:2207278-2207297 | Msa0270870:intron | 20.0% |
| !! | TAAATATAAACAAAATCCAC+AGG | + | chr2_3:2207501-2207520 | None:intergenic | 20.0% |
| !!! | ATTAGATAGTTTTTCACAAA+CGG | - | chr2_3:2207634-2207653 | Msa0270870:intron | 20.0% |
| !! | GTAATATTCCTAAATATTGT+TGG | + | chr2_3:2208405-2208424 | None:intergenic | 20.0% |
| ! | TATTATATGTGCTTACTTGT+AGG | - | chr2_3:2206618-2206637 | Msa0270870:CDS | 25.0% |
| ! | AGTGATCTTAGTATCAAAAT+AGG | - | chr2_3:2206683-2206702 | Msa0270870:CDS | 25.0% |
| ! | AGATAGACGAAAATATAGTA+GGG | - | chr2_3:2207133-2207152 | Msa0270870:intron | 25.0% |
| ! | TACATGAACTATCAAAGAAA+TGG | - | chr2_3:2207237-2207256 | Msa0270870:CDS | 25.0% |
| ! | TATATGTGGTTAGATGAAAA+AGG | - | chr2_3:2207381-2207400 | Msa0270870:intron | 25.0% |
| ! | CTAAATTGTCCTAAAATGAA+TGG | + | chr2_3:2207438-2207457 | None:intergenic | 25.0% |
| ! | TTTCTTATAGATTCCAATTG+AGG | - | chr2_3:2207556-2207575 | Msa0270870:intron | 25.0% |
| !! | TAATGATTGTGTTCTTTTGT+TGG | + | chr2_3:2207618-2207637 | None:intergenic | 25.0% |
| !!! | GATTGATATACACTTTTTTC+AGG | - | chr2_3:2207672-2207691 | Msa0270870:intron | 25.0% |
| ! | TGAAAAACCAATACATTAGT+GGG | + | chr2_3:2208465-2208484 | None:intergenic | 25.0% |
| ! | TTGAAAAACCAATACATTAG+TGG | + | chr2_3:2208466-2208485 | None:intergenic | 25.0% |
| ! | TATTATATGTGCTTACTTGT+AGG | - | chr2_3:2206618-2206637 | Msa0270870:CDS | 25.0% |
| ! | AGTGATCTTAGTATCAAAAT+AGG | - | chr2_3:2206683-2206702 | Msa0270870:CDS | 25.0% |
| ! | AGATAGACGAAAATATAGTA+GGG | - | chr2_3:2207133-2207152 | Msa0270870:intron | 25.0% |
| ! | TACATGAACTATCAAAGAAA+TGG | - | chr2_3:2207237-2207256 | Msa0270870:CDS | 25.0% |
| ! | TATATGTGGTTAGATGAAAA+AGG | - | chr2_3:2207381-2207400 | Msa0270870:intron | 25.0% |
| ! | CTAAATTGTCCTAAAATGAA+TGG | + | chr2_3:2207438-2207457 | None:intergenic | 25.0% |
| ! | TTTCTTATAGATTCCAATTG+AGG | - | chr2_3:2207556-2207575 | Msa0270870:intron | 25.0% |
| !! | TAATGATTGTGTTCTTTTGT+TGG | + | chr2_3:2207618-2207637 | None:intergenic | 25.0% |
| !!! | GATTGATATACACTTTTTTC+AGG | - | chr2_3:2207672-2207691 | Msa0270870:intron | 25.0% |
| ! | TGAAAAACCAATACATTAGT+GGG | + | chr2_3:2208465-2208484 | None:intergenic | 25.0% |
| ! | TTGAAAAACCAATACATTAG+TGG | + | chr2_3:2208466-2208485 | None:intergenic | 25.0% |
| GTTATCAGTTATGTAGGTTA+AGG | - | chr2_3:2206504-2206523 | Msa0270870:three_prime_UTR | 30.0% | |
| TGTTATATGTTCTTGCTTGT+AGG | - | chr2_3:2207103-2207122 | Msa0270870:intron | 30.0% | |
| GAGATAGACGAAAATATAGT+AGG | - | chr2_3:2207132-2207151 | Msa0270870:intron | 30.0% | |
| GATAGACGAAAATATAGTAG+GGG | - | chr2_3:2207134-2207153 | Msa0270870:intron | 30.0% | |
| AGAATAATTGCAATGCTGTT+AGG | - | chr2_3:2207199-2207218 | Msa0270870:intron | 30.0% | |
| !!! | TTTTTTTGGGGAAAATTTGC+AGG | - | chr2_3:2207329-2207348 | Msa0270870:intron | 30.0% |
| !! | TTTCTGCTTTAATTTTCCTG+TGG | - | chr2_3:2207482-2207501 | Msa0270870:intron | 30.0% |
| GGAATCTATAAGAAACTAAC+TGG | + | chr2_3:2207551-2207570 | None:intergenic | 30.0% | |
| TTTGATATACGTTCCTCAAT+TGG | + | chr2_3:2207572-2207591 | None:intergenic | 30.0% | |
| TATTAGACATGATACTGTCA+AGG | - | chr2_3:2207870-2207889 | Msa0270870:intron | 30.0% | |
| TAAATCATGTGACTAGTAAG+TGG | + | chr2_3:2208029-2208048 | None:intergenic | 30.0% | |
| ATGATTTATTGCTTCTTCAG+AGG | - | chr2_3:2208041-2208060 | Msa0270870:intron | 30.0% | |
| TCTTTCATTTGTCTTTCAGA+TGG | - | chr2_3:2208180-2208199 | Msa0270870:CDS | 30.0% | |
| CTGATGTATCTATTGTAATG+AGG | - | chr2_3:2208362-2208381 | Msa0270870:intron | 30.0% | |
| TATTCCTAAATATTGTTGGC+CGG | + | chr2_3:2208401-2208420 | None:intergenic | 30.0% | |
| ATGATTACCCACTAATGTAT+TGG | - | chr2_3:2208455-2208474 | Msa0270870:intron | 30.0% | |
| GTTATCAGTTATGTAGGTTA+AGG | - | chr2_3:2206504-2206523 | Msa0270870:three_prime_UTR | 30.0% | |
| TGTTATATGTTCTTGCTTGT+AGG | - | chr2_3:2207103-2207122 | Msa0270870:intron | 30.0% | |
| GAGATAGACGAAAATATAGT+AGG | - | chr2_3:2207132-2207151 | Msa0270870:intron | 30.0% | |
| GATAGACGAAAATATAGTAG+GGG | - | chr2_3:2207134-2207153 | Msa0270870:intron | 30.0% | |
| AGAATAATTGCAATGCTGTT+AGG | - | chr2_3:2207199-2207218 | Msa0270870:intron | 30.0% | |
| !!! | TTTTTTTGGGGAAAATTTGC+AGG | - | chr2_3:2207329-2207348 | Msa0270870:intron | 30.0% |
| !! | TTTCTGCTTTAATTTTCCTG+TGG | - | chr2_3:2207482-2207501 | Msa0270870:intron | 30.0% |
| GGAATCTATAAGAAACTAAC+TGG | + | chr2_3:2207551-2207570 | None:intergenic | 30.0% | |
| TTTGATATACGTTCCTCAAT+TGG | + | chr2_3:2207572-2207591 | None:intergenic | 30.0% | |
| TATTAGACATGATACTGTCA+AGG | - | chr2_3:2207870-2207889 | Msa0270870:intron | 30.0% | |
| TAAATCATGTGACTAGTAAG+TGG | + | chr2_3:2208029-2208048 | None:intergenic | 30.0% | |
| ATGATTTATTGCTTCTTCAG+AGG | - | chr2_3:2208041-2208060 | Msa0270870:intron | 30.0% | |
| TCTTTCATTTGTCTTTCAGA+TGG | - | chr2_3:2208180-2208199 | Msa0270870:CDS | 30.0% | |
| CTGATGTATCTATTGTAATG+AGG | - | chr2_3:2208362-2208381 | Msa0270870:intron | 30.0% | |
| TATTCCTAAATATTGTTGGC+CGG | + | chr2_3:2208401-2208420 | None:intergenic | 30.0% | |
| ATGATTACCCACTAATGTAT+TGG | - | chr2_3:2208455-2208474 | Msa0270870:intron | 30.0% | |
| CCTACATAACTGATAACCTT+AGG | + | chr2_3:2206501-2206520 | None:intergenic | 35.0% | |
| CCTAAGGTTATCAGTTATGT+AGG | - | chr2_3:2206498-2206517 | Msa0270870:three_prime_UTR | 35.0% | |
| TCACTAGAGACATCAGATAT+CGG | + | chr2_3:2206668-2206687 | None:intergenic | 35.0% | |
| ATGATTGCATATGCTAGACA+TGG | + | chr2_3:2206834-2206853 | None:intergenic | 35.0% | |
| TCACTAGAGACATCAGATAT+CGG | + | chr2_3:2206668-2206687 | None:intergenic | 35.0% | |
| ! | AGTGATCTTAGCATCGAAAT+CGG | - | chr2_3:2206896-2206915 | Msa0270870:intron | 35.0% |
| ! | CTCCTTTGACCATTCATTTT+AGG | - | chr2_3:2207426-2207445 | Msa0270870:intron | 35.0% |
| GTCCTAAAATGAATGGTCAA+AGG | + | chr2_3:2207431-2207450 | None:intergenic | 35.0% | |
| GAGGAACGTATATCAAATGA+TGG | - | chr2_3:2207575-2207594 | Msa0270870:intron | 35.0% | |
| TATTGAAATAACGTCGCTAG+CGG | + | chr2_3:2207977-2207996 | None:intergenic | 35.0% | |
| ATTTATTGCTTCTTCAGAGG+AGG | - | chr2_3:2208044-2208063 | Msa0270870:intron | 35.0% | |
| TTTATTGCTTCTTCAGAGGA+GGG | - | chr2_3:2208045-2208064 | Msa0270870:intron | 35.0% | |
| ATACTCAGAAGATGATGACA+AGG | - | chr2_3:2208070-2208089 | Msa0270870:intron | 35.0% | |
| ! | ATTTTGTCATCTTCAGAGTG+TGG | - | chr2_3:2208124-2208143 | Msa0270870:intron | 35.0% |
| ! | TGAAACTTTGGTGTAAGCAT+AGG | + | chr2_3:2208277-2208296 | None:intergenic | 35.0% |
| TCAACAACAGAGTGAAACTT+TGG | + | chr2_3:2208289-2208308 | None:intergenic | 35.0% | |
| AAAGTTTCACTCTGTTGTTG+AGG | - | chr2_3:2208288-2208307 | Msa0270870:intron | 35.0% | |
| ! | TTTTCCGGCCAACAATATTT+AGG | - | chr2_3:2208394-2208413 | Msa0270870:CDS | 35.0% |
| CCTACATAACTGATAACCTT+AGG | + | chr2_3:2206501-2206520 | None:intergenic | 35.0% | |
| CCTAAGGTTATCAGTTATGT+AGG | - | chr2_3:2206498-2206517 | Msa0270870:three_prime_UTR | 35.0% | |
| TCACTAGAGACATCAGATAT+CGG | + | chr2_3:2206668-2206687 | None:intergenic | 35.0% | |
| ATGATTGCATATGCTAGACA+TGG | + | chr2_3:2206834-2206853 | None:intergenic | 35.0% | |
| TCACTAGAGACATCAGATAT+CGG | + | chr2_3:2206668-2206687 | None:intergenic | 35.0% | |
| ! | AGTGATCTTAGCATCGAAAT+CGG | - | chr2_3:2206896-2206915 | Msa0270870:intron | 35.0% |
| ! | CTCCTTTGACCATTCATTTT+AGG | - | chr2_3:2207426-2207445 | Msa0270870:intron | 35.0% |
| GTCCTAAAATGAATGGTCAA+AGG | + | chr2_3:2207431-2207450 | None:intergenic | 35.0% | |
| GAGGAACGTATATCAAATGA+TGG | - | chr2_3:2207575-2207594 | Msa0270870:intron | 35.0% | |
| TATTGAAATAACGTCGCTAG+CGG | + | chr2_3:2207977-2207996 | None:intergenic | 35.0% | |
| ATTTATTGCTTCTTCAGAGG+AGG | - | chr2_3:2208044-2208063 | Msa0270870:intron | 35.0% | |
| TTTATTGCTTCTTCAGAGGA+GGG | - | chr2_3:2208045-2208064 | Msa0270870:intron | 35.0% | |
| ATACTCAGAAGATGATGACA+AGG | - | chr2_3:2208070-2208089 | Msa0270870:intron | 35.0% | |
| ! | ATTTTGTCATCTTCAGAGTG+TGG | - | chr2_3:2208124-2208143 | Msa0270870:intron | 35.0% |
| ! | TGAAACTTTGGTGTAAGCAT+AGG | + | chr2_3:2208277-2208296 | None:intergenic | 35.0% |
| TCAACAACAGAGTGAAACTT+TGG | + | chr2_3:2208289-2208308 | None:intergenic | 35.0% | |
| AAAGTTTCACTCTGTTGTTG+AGG | - | chr2_3:2208288-2208307 | Msa0270870:intron | 35.0% | |
| ! | TTTTCCGGCCAACAATATTT+AGG | - | chr2_3:2208394-2208413 | Msa0270870:CDS | 35.0% |
| TTCATGCTTTGCACTTCACA+AGG | - | chr2_3:2206709-2206728 | Msa0270870:CDS | 40.0% | |
| GCATATGCAATCATTCAGCT+AGG | - | chr2_3:2206840-2206859 | Msa0270870:CDS | 40.0% | |
| GGAAAATTTGCAGGTGAAAG+TGG | - | chr2_3:2207338-2207357 | Msa0270870:intron | 40.0% | |
| TAGGAGCAATCTGCTATATG+TGG | - | chr2_3:2207367-2207386 | Msa0270870:intron | 40.0% | |
| CAAACGGTTCAGCTAAAGAA+AGG | - | chr2_3:2207650-2207669 | Msa0270870:intron | 40.0% | |
| CTGAATACTATCGACGTTTC+AGG | - | chr2_3:2207828-2207847 | Msa0270870:intron | 40.0% | |
| !! | GACGTTTCAGGTTATGTGAA+GGG | - | chr2_3:2207840-2207859 | Msa0270870:intron | 40.0% |
| !! | ACGTTTCAGGTTATGTGAAG+GGG | - | chr2_3:2207841-2207860 | Msa0270870:intron | 40.0% |
| GCATGAAATATAGCCGCTAT+CGG | - | chr2_3:2207913-2207932 | Msa0270870:intron | 40.0% | |
| ! | TGAAAGAATTTGCTCACCTC+AGG | + | chr2_3:2208167-2208186 | None:intergenic | 40.0% |
| ATACATCAGACTGCACAAAC+AGG | + | chr2_3:2208351-2208370 | None:intergenic | 40.0% | |
| ! | ATGAGGCTCTTCAACTTTTC+CGG | - | chr2_3:2208379-2208398 | Msa0270870:intron | 40.0% |
| TAACTGATAACCTTAGGCAC+AGG | + | chr2_3:2206495-2206514 | None:intergenic | 40.0% | |
| TTCATGCTTTGCACTTCACA+AGG | - | chr2_3:2206709-2206728 | Msa0270870:CDS | 40.0% | |
| GCATATGCAATCATTCAGCT+AGG | - | chr2_3:2206840-2206859 | Msa0270870:CDS | 40.0% | |
| GGAAAATTTGCAGGTGAAAG+TGG | - | chr2_3:2207338-2207357 | Msa0270870:intron | 40.0% | |
| TAGGAGCAATCTGCTATATG+TGG | - | chr2_3:2207367-2207386 | Msa0270870:intron | 40.0% | |
| CAAACGGTTCAGCTAAAGAA+AGG | - | chr2_3:2207650-2207669 | Msa0270870:intron | 40.0% | |
| CTGAATACTATCGACGTTTC+AGG | - | chr2_3:2207828-2207847 | Msa0270870:intron | 40.0% | |
| !! | GACGTTTCAGGTTATGTGAA+GGG | - | chr2_3:2207840-2207859 | Msa0270870:intron | 40.0% |
| !! | ACGTTTCAGGTTATGTGAAG+GGG | - | chr2_3:2207841-2207860 | Msa0270870:intron | 40.0% |
| GCATGAAATATAGCCGCTAT+CGG | - | chr2_3:2207913-2207932 | Msa0270870:intron | 40.0% | |
| ! | TGAAAGAATTTGCTCACCTC+AGG | + | chr2_3:2208167-2208186 | None:intergenic | 40.0% |
| ATACATCAGACTGCACAAAC+AGG | + | chr2_3:2208351-2208370 | None:intergenic | 40.0% | |
| ! | ATGAGGCTCTTCAACTTTTC+CGG | - | chr2_3:2208379-2208398 | Msa0270870:intron | 40.0% |
| TTCGTGCTTTGCACTTCACA+AGG | - | chr2_3:2206922-2206941 | Msa0270870:intron | 45.0% | |
| !! | CGACGTTTCAGGTTATGTGA+AGG | - | chr2_3:2207839-2207858 | Msa0270870:intron | 45.0% |
| !! | CGTTTCAGGTTATGTGAAGG+GGG | - | chr2_3:2207842-2207861 | Msa0270870:intron | 45.0% |
| TAGCGGCTCTATTTCATGTG+GGG | + | chr2_3:2207960-2207979 | None:intergenic | 45.0% | |
| CTAGCGGCTCTATTTCATGT+GGG | + | chr2_3:2207961-2207980 | None:intergenic | 45.0% | |
| CATGTGACTAGTAAGTGGCA+AGG | + | chr2_3:2208024-2208043 | None:intergenic | 45.0% | |
| AGATGATGACAAGGCTGTCA+TGG | - | chr2_3:2208079-2208098 | Msa0270870:intron | 45.0% | |
| CAGGATCCATGCACTTCTAT+TGG | + | chr2_3:2208332-2208351 | None:intergenic | 45.0% | |
| TTCGTGCTTTGCACTTCACA+AGG | - | chr2_3:2206922-2206941 | Msa0270870:intron | 45.0% | |
| !! | CGACGTTTCAGGTTATGTGA+AGG | - | chr2_3:2207839-2207858 | Msa0270870:intron | 45.0% |
| !! | CGTTTCAGGTTATGTGAAGG+GGG | - | chr2_3:2207842-2207861 | Msa0270870:intron | 45.0% |
| TAGCGGCTCTATTTCATGTG+GGG | + | chr2_3:2207960-2207979 | None:intergenic | 45.0% | |
| CTAGCGGCTCTATTTCATGT+GGG | + | chr2_3:2207961-2207980 | None:intergenic | 45.0% | |
| CATGTGACTAGTAAGTGGCA+AGG | + | chr2_3:2208024-2208043 | None:intergenic | 45.0% | |
| AGATGATGACAAGGCTGTCA+TGG | - | chr2_3:2208079-2208098 | Msa0270870:intron | 45.0% | |
| CAGGATCCATGCACTTCTAT+TGG | + | chr2_3:2208332-2208351 | None:intergenic | 45.0% | |
| CAGGTGAAAGTGGTGAGCTT+AGG | - | chr2_3:2207348-2207367 | Msa0270870:intron | 50.0% | |
| AGCGGCTCTATTTCATGTGG+GGG | + | chr2_3:2207959-2207978 | None:intergenic | 50.0% | |
| GCTAGCGGCTCTATTTCATG+TGG | + | chr2_3:2207962-2207981 | None:intergenic | 50.0% | |
| GCACAGAGATCTTAAGCCTG+AGG | - | chr2_3:2208148-2208167 | Msa0270870:intron | 50.0% | |
| GTTGAGGATAGCAGCAGATG+CGG | - | chr2_3:2208304-2208323 | Msa0270870:intron | 50.0% | |
| ! | GCGGTACCAATAGAAGTGCA+TGG | - | chr2_3:2208323-2208342 | Msa0270870:intron | 50.0% |
| CAGGTGAAAGTGGTGAGCTT+AGG | - | chr2_3:2207348-2207367 | Msa0270870:intron | 50.0% | |
| AGCGGCTCTATTTCATGTGG+GGG | + | chr2_3:2207959-2207978 | None:intergenic | 50.0% | |
| GCTAGCGGCTCTATTTCATG+TGG | + | chr2_3:2207962-2207981 | None:intergenic | 50.0% | |
| GCACAGAGATCTTAAGCCTG+AGG | - | chr2_3:2208148-2208167 | Msa0270870:intron | 50.0% | |
| GTTGAGGATAGCAGCAGATG+CGG | - | chr2_3:2208304-2208323 | Msa0270870:intron | 50.0% | |
| ! | GCGGTACCAATAGAAGTGCA+TGG | - | chr2_3:2208323-2208342 | Msa0270870:intron | 50.0% |
| GGCTCTATTTCATGTGGGGG+AGG | + | chr2_3:2207956-2207975 | None:intergenic | 55.0% | |
| GGCTCTATTTCATGTGGGGG+AGG | + | chr2_3:2207956-2207975 | None:intergenic | 55.0% | |
| CATGTGGGGGAGGTCACCCA+CGG | + | chr2_3:2207946-2207965 | None:intergenic | 65.0% | |
| CATGTGGGGGAGGTCACCCA+CGG | + | chr2_3:2207946-2207965 | None:intergenic | 65.0% | |
| ! | CCACGGCACTGCGCCGATAG+CGG | + | chr2_3:2207929-2207948 | None:intergenic | 70.0% |
| CGCTATCGGCGCAGTGCCGT+GGG | - | chr2_3:2207927-2207946 | Msa0270870:intron | 70.0% | |
| ! | CCACGGCACTGCGCCGATAG+CGG | + | chr2_3:2207929-2207948 | None:intergenic | 70.0% |
| CGCTATCGGCGCAGTGCCGT+GGG | - | chr2_3:2207927-2207946 | Msa0270870:intron | 70.0% | |
| CCGCTATCGGCGCAGTGCCG+TGG | - | chr2_3:2207926-2207945 | Msa0270870:intron | 75.0% | |
| CCGCTATCGGCGCAGTGCCG+TGG | - | chr2_3:2207926-2207945 | Msa0270870:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 2206493 | 2208617 | 2206493 | ID=Msa0270870;Name=Msa0270870 |
| chr2_3 | mRNA | 2206493 | 2208617 | 2206493 | ID=Msa0270870-mRNA-1;Parent=Msa0270870;Name=Msa0270870-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.6|0.66|0.83|0.4|0.66|6|125|200 |
| chr2_3 | exon | 2206493 | 2206860 | 2206493 | ID=Msa0270870-mRNA-1:exon:1127;Parent=Msa0270870-mRNA-1 |
| chr2_3 | exon | 2206941 | 2207049 | 2206941 | ID=Msa0270870-mRNA-1:exon:1126;Parent=Msa0270870-mRNA-1 |
| chr2_3 | exon | 2207219 | 2207260 | 2207219 | ID=Msa0270870-mRNA-1:exon:1125;Parent=Msa0270870-mRNA-1 |
| chr2_3 | exon | 2208167 | 2208297 | 2208167 | ID=Msa0270870-mRNA-1:exon:1124;Parent=Msa0270870-mRNA-1 |
| chr2_3 | exon | 2208380 | 2208446 | 2208380 | ID=Msa0270870-mRNA-1:exon:1123;Parent=Msa0270870-mRNA-1 |
| chr2_3 | exon | 2208607 | 2208617 | 2208607 | ID=Msa0270870-mRNA-1:exon:1122;Parent=Msa0270870-mRNA-1 |
| chr2_3 | CDS | 2208607 | 2208617 | 2208607 | ID=Msa0270870-mRNA-1:cds;Parent=Msa0270870-mRNA-1 |
| chr2_3 | CDS | 2208380 | 2208446 | 2208380 | ID=Msa0270870-mRNA-1:cds;Parent=Msa0270870-mRNA-1 |
| chr2_3 | CDS | 2208167 | 2208297 | 2208167 | ID=Msa0270870-mRNA-1:cds;Parent=Msa0270870-mRNA-1 |
| chr2_3 | CDS | 2207219 | 2207260 | 2207219 | ID=Msa0270870-mRNA-1:cds;Parent=Msa0270870-mRNA-1 |
| chr2_3 | CDS | 2206941 | 2207049 | 2206941 | ID=Msa0270870-mRNA-1:cds;Parent=Msa0270870-mRNA-1 |
| chr2_3 | CDS | 2206618 | 2206860 | 2206618 | ID=Msa0270870-mRNA-1:cds;Parent=Msa0270870-mRNA-1 |
| chr2_3 | three_prime_UTR | 2206493 | 2206617 | 2206493 | ID=Msa0270870-mRNA-1:three_prime_utr;Parent=Msa0270870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
