Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0270870 | Msa0495750 | 0.826407 | 2.759451e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495750 | MtrunA17_Chr4g0071491 | 80.645 | 31 | 6 | 0 | 1 | 31 | 11 | 41 | 2.80e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAATATATTTATTTAAAT+TGG | 0.156410 | 3_4:+25346805 | Msa0495750:three_prime_UTR |
| AATTATTATTTGTGTATTAC+AGG | 0.295146 | 3_4:+25344837 | None:intergenic |
| TTTGATATACGTTCCTCAAT+TGG | 0.340909 | 3_4:-25345780 | None:intergenic |
| AGTGATCTTAGTATCAAAAT+AGG | 0.352892 | 3_4:+25344878 | Msa0495750:CDS |
| GTAATATTCCTAAATATTGT+TGG | 0.362172 | 3_4:-25346613 | None:intergenic |
| GGAATCTATAAGAAACTAAC+TGG | 0.375871 | 3_4:-25345759 | None:intergenic |
| ATGATTACCCACTAATGTAT+TGG | 0.388887 | 3_4:+25346666 | Msa0495750:CDS |
| CAGGATCCATGCACTTCTAT+TGG | 0.395232 | 3_4:-25346540 | None:intergenic |
| TTTCTTATAGATTCCAATTG+AGG | 0.430266 | 3_4:+25345767 | Msa0495750:CDS |
| TCACTAGAGACATCAGATAT+CGG | 0.481120 | 3_4:-25344860 | None:intergenic |
| TCACTAGAGACATCAGATAT+CGG | 0.481120 | 3_4:-25345073 | None:intergenic |
| TATTCCTAAATATTGTTGGC+CGG | 0.498924 | 3_4:-25346609 | None:intergenic |
| AGTGATCTTAGCATCGAAAT+CGG | 0.501640 | 3_4:+25345091 | Msa0495750:CDS |
| ATACATCAGACTGCACAAAC+AGG | 0.513205 | 3_4:-25346559 | None:intergenic |
| TCAACAACAGAGTGAAACTT+TGG | 0.514255 | 3_4:-25346497 | None:intergenic |
| TTCGTGCTTTGCACTTCACA+AGG | 0.556850 | 3_4:+25345117 | Msa0495750:CDS |
| TTCATGCTTTGCACTTCACA+AGG | 0.559618 | 3_4:+25344904 | Msa0495750:CDS |
| CTGATGTATCTATTGTAATG+AGG | 0.567651 | 3_4:+25346573 | Msa0495750:CDS |
| GCATATGCAATCATTCAGCT+AGG | 0.575476 | 3_4:+25345035 | Msa0495750:CDS |
| TGAAACTTTGGTGTAAGCAT+AGG | 0.579401 | 3_4:-25346485 | None:intergenic |
| AAAGTTTCACTCTGTTGTTG+AGG | 0.582670 | 3_4:+25346499 | Msa0495750:CDS |
| GCGGTACCAATAGAAGTGCA+TGG | 0.619785 | 3_4:+25346534 | Msa0495750:CDS |
| ATGATTGCATATGCTAGACA+TGG | 0.634319 | 3_4:-25345026 | None:intergenic |
| GTTGAGGATAGCAGCAGATG+CGG | 0.641502 | 3_4:+25346515 | Msa0495750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATATTTATTTAAAT+TGG | + | chr3_4:25346805-25346824 | Msa0495750:three_prime_UTR | 0.0% |
| !! | AATAATATATTTATTTAAAT+TGG | + | chr3_4:25346805-25346824 | Msa0495750:three_prime_UTR | 0.0% |
| !!! | AACAATATTTTGATTTTTTT+GGG | + | chr3_4:25345527-25345546 | Msa0495750:intron | 10.0% |
| !! | TAATCATATTTAAATATCTT+AGG | + | chr3_4:25346439-25346458 | Msa0495750:intron | 10.0% |
| !! | AATCATATTTAAATATCTTA+GGG | + | chr3_4:25346440-25346459 | Msa0495750:intron | 10.0% |
| !!! | ATATTACTTAATCTAATTTT+TGG | + | chr3_4:25346629-25346648 | Msa0495750:CDS | 10.0% |
| !!! | AACAATATTTTGATTTTTTT+GGG | + | chr3_4:25345527-25345546 | Msa0495750:intron | 10.0% |
| !! | TAATCATATTTAAATATCTT+AGG | + | chr3_4:25346439-25346458 | Msa0495750:intron | 10.0% |
| !! | AATCATATTTAAATATCTTA+GGG | + | chr3_4:25346440-25346459 | Msa0495750:intron | 10.0% |
| !!! | ATATTACTTAATCTAATTTT+TGG | + | chr3_4:25346629-25346648 | Msa0495750:CDS | 10.0% |
| !!! | CAACAATATTTTGATTTTTT+TGG | + | chr3_4:25345526-25345545 | Msa0495750:intron | 15.0% |
| !!! | ACAATATTTTGATTTTTTTG+GGG | + | chr3_4:25345528-25345547 | Msa0495750:intron | 15.0% |
| !!! | CAACAATATTTTGATTTTTT+TGG | + | chr3_4:25345526-25345545 | Msa0495750:intron | 15.0% |
| !!! | ACAATATTTTGATTTTTTTG+GGG | + | chr3_4:25345528-25345547 | Msa0495750:intron | 15.0% |
| !! | TGAATATGCAATAACATATA+AGG | - | chr3_4:25344945-25344964 | None:intergenic | 20.0% |
| !! | TATGCAATAACATATAAGAA+AGG | - | chr3_4:25345158-25345177 | None:intergenic | 20.0% |
| !!! | CTGACTTTTATTTAATCTTA+TGG | + | chr3_4:25345489-25345508 | Msa0495750:intron | 20.0% |
| !! | TAAATATAAACAAAATCCAC+AGG | - | chr3_4:25345712-25345731 | None:intergenic | 20.0% |
| !!! | ATTAGATAGTTTTTCACAAA+CGG | + | chr3_4:25345845-25345864 | Msa0495750:intron | 20.0% |
| !! | GTAATATTCCTAAATATTGT+TGG | - | chr3_4:25346616-25346635 | None:intergenic | 20.0% |
| !! | TGAATATGCAATAACATATA+AGG | - | chr3_4:25344945-25344964 | None:intergenic | 20.0% |
| !! | TATGCAATAACATATAAGAA+AGG | - | chr3_4:25345158-25345177 | None:intergenic | 20.0% |
| !!! | CTGACTTTTATTTAATCTTA+TGG | + | chr3_4:25345489-25345508 | Msa0495750:intron | 20.0% |
| !! | TAAATATAAACAAAATCCAC+AGG | - | chr3_4:25345712-25345731 | None:intergenic | 20.0% |
| !!! | ATTAGATAGTTTTTCACAAA+CGG | + | chr3_4:25345845-25345864 | Msa0495750:intron | 20.0% |
| !! | GTAATATTCCTAAATATTGT+TGG | - | chr3_4:25346616-25346635 | None:intergenic | 20.0% |
| ! | AGTGATCTTAGTATCAAAAT+AGG | + | chr3_4:25344878-25344897 | Msa0495750:CDS | 25.0% |
| ! | AGATAGACGAAAATATAGTA+GGG | + | chr3_4:25345344-25345363 | Msa0495750:intron | 25.0% |
| ! | TACATGAACTATCAAAGAAA+TGG | + | chr3_4:25345448-25345467 | Msa0495750:intron | 25.0% |
| ! | TATATGTGGTTAGATGAAAA+AGG | + | chr3_4:25345592-25345611 | Msa0495750:intron | 25.0% |
| ! | CTAAATTGTCCTAAAATGAA+TGG | - | chr3_4:25345649-25345668 | None:intergenic | 25.0% |
| ! | TTTCTTATAGATTCCAATTG+AGG | + | chr3_4:25345767-25345786 | Msa0495750:CDS | 25.0% |
| !! | TAATGATTGTGTTCTTTTGT+TGG | - | chr3_4:25345829-25345848 | None:intergenic | 25.0% |
| !!! | GATTGATATACACTTTTTTC+AGG | + | chr3_4:25345883-25345902 | Msa0495750:intron | 25.0% |
| ! | TGAAAAACCAATACATTAGT+GGG | - | chr3_4:25346676-25346695 | None:intergenic | 25.0% |
| ! | TTGAAAAACCAATACATTAG+TGG | - | chr3_4:25346677-25346696 | None:intergenic | 25.0% |
| ! | AGTGATCTTAGTATCAAAAT+AGG | + | chr3_4:25344878-25344897 | Msa0495750:CDS | 25.0% |
| ! | AGATAGACGAAAATATAGTA+GGG | + | chr3_4:25345344-25345363 | Msa0495750:intron | 25.0% |
| ! | TACATGAACTATCAAAGAAA+TGG | + | chr3_4:25345448-25345467 | Msa0495750:intron | 25.0% |
| ! | TATATGTGGTTAGATGAAAA+AGG | + | chr3_4:25345592-25345611 | Msa0495750:intron | 25.0% |
| ! | CTAAATTGTCCTAAAATGAA+TGG | - | chr3_4:25345649-25345668 | None:intergenic | 25.0% |
| ! | TTTCTTATAGATTCCAATTG+AGG | + | chr3_4:25345767-25345786 | Msa0495750:CDS | 25.0% |
| !! | TAATGATTGTGTTCTTTTGT+TGG | - | chr3_4:25345829-25345848 | None:intergenic | 25.0% |
| !!! | GATTGATATACACTTTTTTC+AGG | + | chr3_4:25345883-25345902 | Msa0495750:intron | 25.0% |
| ! | TGAAAAACCAATACATTAGT+GGG | - | chr3_4:25346676-25346695 | None:intergenic | 25.0% |
| ! | TTGAAAAACCAATACATTAG+TGG | - | chr3_4:25346677-25346696 | None:intergenic | 25.0% |
| TGTTATATGTTCTTGCTTGT+AGG | + | chr3_4:25345314-25345333 | Msa0495750:intron | 30.0% | |
| GAGATAGACGAAAATATAGT+AGG | + | chr3_4:25345343-25345362 | Msa0495750:intron | 30.0% | |
| GATAGACGAAAATATAGTAG+GGG | + | chr3_4:25345345-25345364 | Msa0495750:intron | 30.0% | |
| AGAATAATTGCAATGCTGTT+AGG | + | chr3_4:25345410-25345429 | Msa0495750:intron | 30.0% | |
| !!! | TTTTTTTGGGGAAAATTTGC+AGG | + | chr3_4:25345540-25345559 | Msa0495750:intron | 30.0% |
| !! | TTTCTGCTTTAATTTTCCTG+TGG | + | chr3_4:25345693-25345712 | Msa0495750:intron | 30.0% |
| GGAATCTATAAGAAACTAAC+TGG | - | chr3_4:25345762-25345781 | None:intergenic | 30.0% | |
| TTTGATATACGTTCCTCAAT+TGG | - | chr3_4:25345783-25345802 | None:intergenic | 30.0% | |
| TATTAGACATGATACTGTCA+AGG | + | chr3_4:25346081-25346100 | Msa0495750:intron | 30.0% | |
| TAAATCATGTGACTAGTAAG+TGG | - | chr3_4:25346240-25346259 | None:intergenic | 30.0% | |
| ATGATTTATTGCTTCTTCAG+AGG | + | chr3_4:25346252-25346271 | Msa0495750:intron | 30.0% | |
| TCTTTCATTTGTCTTTCAGA+TGG | + | chr3_4:25346391-25346410 | Msa0495750:intron | 30.0% | |
| CTGATGTATCTATTGTAATG+AGG | + | chr3_4:25346573-25346592 | Msa0495750:CDS | 30.0% | |
| TATTCCTAAATATTGTTGGC+CGG | - | chr3_4:25346612-25346631 | None:intergenic | 30.0% | |
| ATGATTACCCACTAATGTAT+TGG | + | chr3_4:25346666-25346685 | Msa0495750:CDS | 30.0% | |
| TGTTATATGTTCTTGCTTGT+AGG | + | chr3_4:25345314-25345333 | Msa0495750:intron | 30.0% | |
| GAGATAGACGAAAATATAGT+AGG | + | chr3_4:25345343-25345362 | Msa0495750:intron | 30.0% | |
| GATAGACGAAAATATAGTAG+GGG | + | chr3_4:25345345-25345364 | Msa0495750:intron | 30.0% | |
| AGAATAATTGCAATGCTGTT+AGG | + | chr3_4:25345410-25345429 | Msa0495750:intron | 30.0% | |
| !!! | TTTTTTTGGGGAAAATTTGC+AGG | + | chr3_4:25345540-25345559 | Msa0495750:intron | 30.0% |
| !! | TTTCTGCTTTAATTTTCCTG+TGG | + | chr3_4:25345693-25345712 | Msa0495750:intron | 30.0% |
| GGAATCTATAAGAAACTAAC+TGG | - | chr3_4:25345762-25345781 | None:intergenic | 30.0% | |
| TTTGATATACGTTCCTCAAT+TGG | - | chr3_4:25345783-25345802 | None:intergenic | 30.0% | |
| TATTAGACATGATACTGTCA+AGG | + | chr3_4:25346081-25346100 | Msa0495750:intron | 30.0% | |
| TAAATCATGTGACTAGTAAG+TGG | - | chr3_4:25346240-25346259 | None:intergenic | 30.0% | |
| ATGATTTATTGCTTCTTCAG+AGG | + | chr3_4:25346252-25346271 | Msa0495750:intron | 30.0% | |
| TCTTTCATTTGTCTTTCAGA+TGG | + | chr3_4:25346391-25346410 | Msa0495750:intron | 30.0% | |
| CTGATGTATCTATTGTAATG+AGG | + | chr3_4:25346573-25346592 | Msa0495750:CDS | 30.0% | |
| TATTCCTAAATATTGTTGGC+CGG | - | chr3_4:25346612-25346631 | None:intergenic | 30.0% | |
| ATGATTACCCACTAATGTAT+TGG | + | chr3_4:25346666-25346685 | Msa0495750:CDS | 30.0% | |
| TCACTAGAGACATCAGATAT+CGG | - | chr3_4:25344863-25344882 | None:intergenic | 35.0% | |
| ATGATTGCATATGCTAGACA+TGG | - | chr3_4:25345029-25345048 | None:intergenic | 35.0% | |
| TCACTAGAGACATCAGATAT+CGG | - | chr3_4:25344863-25344882 | None:intergenic | 35.0% | |
| ! | AGTGATCTTAGCATCGAAAT+CGG | + | chr3_4:25345091-25345110 | Msa0495750:CDS | 35.0% |
| ! | CTCCTTTGACCATTCATTTT+AGG | + | chr3_4:25345637-25345656 | Msa0495750:intron | 35.0% |
| GTCCTAAAATGAATGGTCAA+AGG | - | chr3_4:25345642-25345661 | None:intergenic | 35.0% | |
| GAGGAACGTATATCAAATGA+TGG | + | chr3_4:25345786-25345805 | Msa0495750:intron | 35.0% | |
| TATTGAAATAACGTCGCTAG+CGG | - | chr3_4:25346188-25346207 | None:intergenic | 35.0% | |
| ATTTATTGCTTCTTCAGAGG+AGG | + | chr3_4:25346255-25346274 | Msa0495750:intron | 35.0% | |
| TTTATTGCTTCTTCAGAGGA+GGG | + | chr3_4:25346256-25346275 | Msa0495750:intron | 35.0% | |
| ATACTCAGAAGATGATGACA+AGG | + | chr3_4:25346281-25346300 | Msa0495750:intron | 35.0% | |
| ! | ATTTTGTCATCTTCAGAGTG+TGG | + | chr3_4:25346335-25346354 | Msa0495750:intron | 35.0% |
| ! | TGAAACTTTGGTGTAAGCAT+AGG | - | chr3_4:25346488-25346507 | None:intergenic | 35.0% |
| TCAACAACAGAGTGAAACTT+TGG | - | chr3_4:25346500-25346519 | None:intergenic | 35.0% | |
| AAAGTTTCACTCTGTTGTTG+AGG | + | chr3_4:25346499-25346518 | Msa0495750:CDS | 35.0% | |
| ! | TTTTCCGGCCAACAATATTT+AGG | + | chr3_4:25346605-25346624 | Msa0495750:CDS | 35.0% |
| TCACTAGAGACATCAGATAT+CGG | - | chr3_4:25344863-25344882 | None:intergenic | 35.0% | |
| ATGATTGCATATGCTAGACA+TGG | - | chr3_4:25345029-25345048 | None:intergenic | 35.0% | |
| TCACTAGAGACATCAGATAT+CGG | - | chr3_4:25344863-25344882 | None:intergenic | 35.0% | |
| ! | AGTGATCTTAGCATCGAAAT+CGG | + | chr3_4:25345091-25345110 | Msa0495750:CDS | 35.0% |
| ! | CTCCTTTGACCATTCATTTT+AGG | + | chr3_4:25345637-25345656 | Msa0495750:intron | 35.0% |
| GTCCTAAAATGAATGGTCAA+AGG | - | chr3_4:25345642-25345661 | None:intergenic | 35.0% | |
| GAGGAACGTATATCAAATGA+TGG | + | chr3_4:25345786-25345805 | Msa0495750:intron | 35.0% | |
| TATTGAAATAACGTCGCTAG+CGG | - | chr3_4:25346188-25346207 | None:intergenic | 35.0% | |
| ATTTATTGCTTCTTCAGAGG+AGG | + | chr3_4:25346255-25346274 | Msa0495750:intron | 35.0% | |
| TTTATTGCTTCTTCAGAGGA+GGG | + | chr3_4:25346256-25346275 | Msa0495750:intron | 35.0% | |
| ATACTCAGAAGATGATGACA+AGG | + | chr3_4:25346281-25346300 | Msa0495750:intron | 35.0% | |
| ! | ATTTTGTCATCTTCAGAGTG+TGG | + | chr3_4:25346335-25346354 | Msa0495750:intron | 35.0% |
| ! | TGAAACTTTGGTGTAAGCAT+AGG | - | chr3_4:25346488-25346507 | None:intergenic | 35.0% |
| TCAACAACAGAGTGAAACTT+TGG | - | chr3_4:25346500-25346519 | None:intergenic | 35.0% | |
| AAAGTTTCACTCTGTTGTTG+AGG | + | chr3_4:25346499-25346518 | Msa0495750:CDS | 35.0% | |
| ! | TTTTCCGGCCAACAATATTT+AGG | + | chr3_4:25346605-25346624 | Msa0495750:CDS | 35.0% |
| TTCATGCTTTGCACTTCACA+AGG | + | chr3_4:25344904-25344923 | Msa0495750:CDS | 40.0% | |
| GCATATGCAATCATTCAGCT+AGG | + | chr3_4:25345035-25345054 | Msa0495750:CDS | 40.0% | |
| GGAAAATTTGCAGGTGAAAG+TGG | + | chr3_4:25345549-25345568 | Msa0495750:intron | 40.0% | |
| TAGGAGCAATCTGCTATATG+TGG | + | chr3_4:25345578-25345597 | Msa0495750:intron | 40.0% | |
| CAAACGGTTCAGCTAAAGAA+AGG | + | chr3_4:25345861-25345880 | Msa0495750:intron | 40.0% | |
| CTGAATACTATCGACGTTTC+AGG | + | chr3_4:25346039-25346058 | Msa0495750:intron | 40.0% | |
| !! | GACGTTTCAGGTTATGTGAA+GGG | + | chr3_4:25346051-25346070 | Msa0495750:intron | 40.0% |
| !! | ACGTTTCAGGTTATGTGAAG+GGG | + | chr3_4:25346052-25346071 | Msa0495750:intron | 40.0% |
| GCATGAAATATAGCCGCTAT+CGG | + | chr3_4:25346124-25346143 | Msa0495750:intron | 40.0% | |
| ! | TGAAAGAATTTGCTCACCTC+AGG | - | chr3_4:25346378-25346397 | None:intergenic | 40.0% |
| ATACATCAGACTGCACAAAC+AGG | - | chr3_4:25346562-25346581 | None:intergenic | 40.0% | |
| ! | ATGAGGCTCTTCAACTTTTC+CGG | + | chr3_4:25346590-25346609 | Msa0495750:CDS | 40.0% |
| TTCATGCTTTGCACTTCACA+AGG | + | chr3_4:25344904-25344923 | Msa0495750:CDS | 40.0% | |
| GCATATGCAATCATTCAGCT+AGG | + | chr3_4:25345035-25345054 | Msa0495750:CDS | 40.0% | |
| GGAAAATTTGCAGGTGAAAG+TGG | + | chr3_4:25345549-25345568 | Msa0495750:intron | 40.0% | |
| TAGGAGCAATCTGCTATATG+TGG | + | chr3_4:25345578-25345597 | Msa0495750:intron | 40.0% | |
| CAAACGGTTCAGCTAAAGAA+AGG | + | chr3_4:25345861-25345880 | Msa0495750:intron | 40.0% | |
| CTGAATACTATCGACGTTTC+AGG | + | chr3_4:25346039-25346058 | Msa0495750:intron | 40.0% | |
| !! | GACGTTTCAGGTTATGTGAA+GGG | + | chr3_4:25346051-25346070 | Msa0495750:intron | 40.0% |
| !! | ACGTTTCAGGTTATGTGAAG+GGG | + | chr3_4:25346052-25346071 | Msa0495750:intron | 40.0% |
| GCATGAAATATAGCCGCTAT+CGG | + | chr3_4:25346124-25346143 | Msa0495750:intron | 40.0% | |
| ! | TGAAAGAATTTGCTCACCTC+AGG | - | chr3_4:25346378-25346397 | None:intergenic | 40.0% |
| ATACATCAGACTGCACAAAC+AGG | - | chr3_4:25346562-25346581 | None:intergenic | 40.0% | |
| ! | ATGAGGCTCTTCAACTTTTC+CGG | + | chr3_4:25346590-25346609 | Msa0495750:CDS | 40.0% |
| TTCGTGCTTTGCACTTCACA+AGG | + | chr3_4:25345117-25345136 | Msa0495750:CDS | 45.0% | |
| !! | CGACGTTTCAGGTTATGTGA+AGG | + | chr3_4:25346050-25346069 | Msa0495750:intron | 45.0% |
| !! | CGTTTCAGGTTATGTGAAGG+GGG | + | chr3_4:25346053-25346072 | Msa0495750:intron | 45.0% |
| TAGCGGCTCTATTTCATGTG+GGG | - | chr3_4:25346171-25346190 | None:intergenic | 45.0% | |
| CTAGCGGCTCTATTTCATGT+GGG | - | chr3_4:25346172-25346191 | None:intergenic | 45.0% | |
| CATGTGACTAGTAAGTGGCA+AGG | - | chr3_4:25346235-25346254 | None:intergenic | 45.0% | |
| AGATGATGACAAGGCTGTCA+TGG | + | chr3_4:25346290-25346309 | Msa0495750:intron | 45.0% | |
| CAGGATCCATGCACTTCTAT+TGG | - | chr3_4:25346543-25346562 | None:intergenic | 45.0% | |
| TTCGTGCTTTGCACTTCACA+AGG | + | chr3_4:25345117-25345136 | Msa0495750:CDS | 45.0% | |
| !! | CGACGTTTCAGGTTATGTGA+AGG | + | chr3_4:25346050-25346069 | Msa0495750:intron | 45.0% |
| !! | CGTTTCAGGTTATGTGAAGG+GGG | + | chr3_4:25346053-25346072 | Msa0495750:intron | 45.0% |
| TAGCGGCTCTATTTCATGTG+GGG | - | chr3_4:25346171-25346190 | None:intergenic | 45.0% | |
| CTAGCGGCTCTATTTCATGT+GGG | - | chr3_4:25346172-25346191 | None:intergenic | 45.0% | |
| CATGTGACTAGTAAGTGGCA+AGG | - | chr3_4:25346235-25346254 | None:intergenic | 45.0% | |
| AGATGATGACAAGGCTGTCA+TGG | + | chr3_4:25346290-25346309 | Msa0495750:intron | 45.0% | |
| CAGGATCCATGCACTTCTAT+TGG | - | chr3_4:25346543-25346562 | None:intergenic | 45.0% | |
| CAGGTGAAAGTGGTGAGCTT+AGG | + | chr3_4:25345559-25345578 | Msa0495750:intron | 50.0% | |
| AGCGGCTCTATTTCATGTGG+GGG | - | chr3_4:25346170-25346189 | None:intergenic | 50.0% | |
| GCTAGCGGCTCTATTTCATG+TGG | - | chr3_4:25346173-25346192 | None:intergenic | 50.0% | |
| GCACAGAGATCTTAAGCCTG+AGG | + | chr3_4:25346359-25346378 | Msa0495750:intron | 50.0% | |
| GTTGAGGATAGCAGCAGATG+CGG | + | chr3_4:25346515-25346534 | Msa0495750:CDS | 50.0% | |
| ! | GCGGTACCAATAGAAGTGCA+TGG | + | chr3_4:25346534-25346553 | Msa0495750:CDS | 50.0% |
| CAGGTGAAAGTGGTGAGCTT+AGG | + | chr3_4:25345559-25345578 | Msa0495750:intron | 50.0% | |
| AGCGGCTCTATTTCATGTGG+GGG | - | chr3_4:25346170-25346189 | None:intergenic | 50.0% | |
| GCTAGCGGCTCTATTTCATG+TGG | - | chr3_4:25346173-25346192 | None:intergenic | 50.0% | |
| GCACAGAGATCTTAAGCCTG+AGG | + | chr3_4:25346359-25346378 | Msa0495750:intron | 50.0% | |
| GTTGAGGATAGCAGCAGATG+CGG | + | chr3_4:25346515-25346534 | Msa0495750:CDS | 50.0% | |
| ! | GCGGTACCAATAGAAGTGCA+TGG | + | chr3_4:25346534-25346553 | Msa0495750:CDS | 50.0% |
| GGCTCTATTTCATGTGGGGG+AGG | - | chr3_4:25346167-25346186 | None:intergenic | 55.0% | |
| GGCTCTATTTCATGTGGGGG+AGG | - | chr3_4:25346167-25346186 | None:intergenic | 55.0% | |
| CATGTGGGGGAGGTCACCCA+CGG | - | chr3_4:25346157-25346176 | None:intergenic | 65.0% | |
| CATGTGGGGGAGGTCACCCA+CGG | - | chr3_4:25346157-25346176 | None:intergenic | 65.0% | |
| ! | CCACGGCACTGCGCCGATAG+CGG | - | chr3_4:25346140-25346159 | None:intergenic | 70.0% |
| CGCTATCGGCGCAGTGCCGT+GGG | + | chr3_4:25346138-25346157 | Msa0495750:intron | 70.0% | |
| ! | CCACGGCACTGCGCCGATAG+CGG | - | chr3_4:25346140-25346159 | None:intergenic | 70.0% |
| CGCTATCGGCGCAGTGCCGT+GGG | + | chr3_4:25346138-25346157 | Msa0495750:intron | 70.0% | |
| CCGCTATCGGCGCAGTGCCG+TGG | + | chr3_4:25346137-25346156 | Msa0495750:intron | 75.0% | |
| CCGCTATCGGCGCAGTGCCG+TGG | + | chr3_4:25346137-25346156 | Msa0495750:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 25344845 | 25346828 | 25344845 | ID=Msa0495750;Name=Msa0495750 |
| chr3_4 | mRNA | 25344845 | 25346828 | 25344845 | ID=Msa0495750-mRNA-1;Parent=Msa0495750;Name=Msa0495750-mRNA-1;_AED=0.21;_eAED=0.27;_QI=0|0.33|0.75|1|0.33|0.75|4|125|165 |
| chr3_4 | exon | 25344845 | 25344925 | 25344845 | ID=Msa0495750-mRNA-1:exon:6119;Parent=Msa0495750-mRNA-1 |
| chr3_4 | exon | 25345008 | 25345138 | 25345008 | ID=Msa0495750-mRNA-1:exon:6120;Parent=Msa0495750-mRNA-1 |
| chr3_4 | exon | 25345750 | 25345792 | 25345750 | ID=Msa0495750-mRNA-1:exon:6121;Parent=Msa0495750-mRNA-1 |
| chr3_4 | exon | 25346461 | 25346828 | 25346461 | ID=Msa0495750-mRNA-1:exon:6122;Parent=Msa0495750-mRNA-1 |
| chr3_4 | CDS | 25344845 | 25344925 | 25344845 | ID=Msa0495750-mRNA-1:cds;Parent=Msa0495750-mRNA-1 |
| chr3_4 | CDS | 25345008 | 25345138 | 25345008 | ID=Msa0495750-mRNA-1:cds;Parent=Msa0495750-mRNA-1 |
| chr3_4 | CDS | 25345750 | 25345792 | 25345750 | ID=Msa0495750-mRNA-1:cds;Parent=Msa0495750-mRNA-1 |
| chr3_4 | CDS | 25346461 | 25346703 | 25346461 | ID=Msa0495750-mRNA-1:cds;Parent=Msa0495750-mRNA-1 |
| chr3_4 | three_prime_UTR | 25346704 | 25346828 | 25346704 | ID=Msa0495750-mRNA-1:three_prime_utr;Parent=Msa0495750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
